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text: fecal microbiota

text: fecal microbiota

text: Denmark

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text: metagenome

text: human gut metagenome

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text: human gut metagenome

text: Illumina Miseq

text: control 13-42


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

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text: AARHUS UNIVERSITY, DENMARK

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text: fecal microbiota

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: Impact of Skyr consumption on fecal microbiota composition and fermentation activity

characteristic: project name

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characteristic: title


text: AARHUS UNIVERSITY, DENMARK

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characteristic: collection date

text: human fecal

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text: fecal microbiota

characteristic: environment (biome)

text: fecal microbiota

text: fecal microbiota

text: Denmark

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characteristic: organism

text: human gut metagenome

text: Illumina Miseq

text: skyr 8-112


characteristic: ENA-CHECKLIST

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text: AARHUS UNIVERSITY, DENMARK

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text: fecal microbiota

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characteristic: environment (feature)

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text: Denmark

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text: human gut metagenome

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text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: AARHUS UNIVERSITY, DENMARK

characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human fecal

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text: fecal microbiota

characteristic: environment (biome)

text: fecal microbiota

text: fecal microbiota

text: Denmark

text: human gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina Miseq

text: control 14-112


characteristic: ENA-CHECKLIST

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text: AARHUS UNIVERSITY, DENMARK

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text: fecal microbiota

text: fecal microbiota

characteristic: environment (feature)

text: fecal microbiota

characteristic: environment (material)

text: Denmark

text: human gut

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text: human gut metagenome

text: human gut metagenome

text: Illumina Miseq

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text: AARHUS UNIVERSITY, DENMARK

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text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human gut

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text: AARHUS UNIVERSITY, DENMARK

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: human fecal

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text: fecal microbiota

characteristic: environment (biome)

text: fecal microbiota

text: fecal microbiota

text: Denmark

text: human gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina Miseq

text: skyr 9-112


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: AARHUS UNIVERSITY, DENMARK

characteristic: INSDC center name

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text: human fecal

text: fecal microbiota

text: fecal microbiota

characteristic: environment (feature)

text: fecal microbiota

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text: Denmark

text: human gut

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text: human gut metagenome

text: human gut metagenome

text: Illumina Miseq

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text: AARHUS UNIVERSITY, DENMARK

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text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

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text: human gut

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text: AARHUS UNIVERSITY, DENMARK

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characteristic: INSDC status

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text: human fecal

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text: fecal microbiota

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text: fecal microbiota

text: fecal microbiota

text: Denmark

text: human gut

text: metagenome

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characteristic: organism

text: human gut metagenome

text: Illumina Miseq

text: control 15-0


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: AARHUS UNIVERSITY, DENMARK

characteristic: INSDC center name

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text: fecal microbiota

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characteristic: environment (feature)

text: fecal microbiota

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text: Denmark

text: human gut

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text: human gut metagenome

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text: Illumina Miseq

text: control 15-112


text: AARHUS UNIVERSITY, DENMARK

text: public

text: human fecal

text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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text: human gut

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text: metagenome

characteristic: investigation type

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text: AARHUS UNIVERSITY, DENMARK

characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: human fecal

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text: fecal microbiota

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text: fecal microbiota

text: fecal microbiota

text: Denmark

text: human gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina Miseq

text: control 16-1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: AARHUS UNIVERSITY, DENMARK

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text: human fecal

text: fecal microbiota

text: fecal microbiota

characteristic: environment (feature)

text: fecal microbiota

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text: Denmark

text: human gut

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text: human gut metagenome

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text: AARHUS UNIVERSITY, DENMARK

text: public

text: human fecal

text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

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text: human gut

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text: AARHUS UNIVERSITY, DENMARK

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text: human fecal

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text: fecal microbiota

text: fecal microbiota

text: Denmark

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text: human gut metagenome

text: Illumina Miseq

text: control 17-3


characteristic: ENA-CHECKLIST

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text: AARHUS UNIVERSITY, DENMARK

characteristic: INSDC center name

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text: human fecal

text: fecal microbiota

text: fecal microbiota

characteristic: environment (feature)

text: fecal microbiota

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text: Denmark

text: human gut

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text: human gut metagenome

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text: Illumina Miseq

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text: AARHUS UNIVERSITY, DENMARK

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text: human fecal

text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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text: human gut

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text: human gut metagenome

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text: AARHUS UNIVERSITY, DENMARK

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text: human fecal

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text: fecal microbiota

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text: fecal microbiota

text: fecal microbiota

text: Denmark

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text: human gut metagenome

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text: human gut metagenome

text: Illumina Miseq

text: control 18-1


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: AARHUS UNIVERSITY, DENMARK

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text: public

text: human fecal

text: fecal microbiota

text: fecal microbiota

characteristic: environment (feature)

text: fecal microbiota

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text: Denmark

text: human gut

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text: human gut metagenome

text: human gut metagenome

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text: AARHUS UNIVERSITY, DENMARK

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text: template control

text: fecal microbiota

text: fecal microbiota

text: fecal microbiota

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: blank sample

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text: blank sample

text: Illumina Miseq

characteristic: sequencing method

text: negative control

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

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characteristic: SRA accession

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Laboratorio di Diagnostica Molecolare SA Lugano, c/o Cardiocentro Ticino

characteristic: collecting institution

characteristic: collection date

text: Martinetti Lucchini Gladys, Valeria Spina

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26348294/2021

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26348297/2021

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26355269/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26355275/2021

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26355282/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BUGS

text: public

text: GBR

characteristic: collection date

text: Mycobacterium

characteristic: genus

text: United Kingdom

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Human

text: culture

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

type: AMR curated data - CABBAGE

value: pretomanid

value: broth dilution

value: mg/L

value: Mycobacterium tuberculosis


text: UNIVERSITY HEALTH NETWORK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY HEALTH NETWORK

text: human

characteristic: common name

text: Myeloma cell line dilution

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: UNIVERSITY HEALTH NETWORK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Myeloma cell line

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY HEALTH NETWORK

text: public

text: human

text: Myeloma cell line

text: Homo sapiens

text: Homo sapiens

text: ARP

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY HEALTH NETWORK

text: public

text: human

text: Myeloma cell line

text: Homo sapiens

text: Homo sapiens

text: ARPI


text: UNIVERSITY HEALTH NETWORK

text: public

text: human

text: Myeloma cell line

text: Homo sapiens

text: Homo sapiens

text: CAG


text: UNIVERSITY HEALTH NETWORK

text: public

text: human

text: Myeloma cell line

text: Homo sapiens

text: Homo sapiens

text: EJM


text: UNIVERSITY HEALTH NETWORK

text: public

text: human

text: Myeloma cell line

text: Homo sapiens

text: Homo sapiens

text: JIMI


text: iBB-IST

text: public

characteristic: collection date

text: PacBio Sequel Genome Sequence of Aquimarina sp. strain Aq135

text: Marine

characteristic: environment (biome)

text: Atlantic Ocean

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: 139x coverage

characteristic: finishing strategy

text: Portugal

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Algarve, Gale Alta

characteristic: geographic location (region and locality)

text: marine sponge

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Aquimarina sp. Aq135

text: PacBio Sequel Genome Sequencing of the marine sponge-derived Aquimarina sp. strain Aq135

characteristic: project name

characteristic: reference for biomaterial

text: Aquimarina sp. Aq135

text: PacBio Sequel (Pacific Biosciences)

characteristic: sequencing method


E-MTAB-11162:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11162:Sample 1

tag: Namespace:Center for Biotechnology,  Bielefeld University

characteristic: Submitter Id

text: 8 to 10

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

characteristic: common name

text: Protocols: Male and female golden hamsters (8-10 weeks old) were purchased from Janvier. All animals were kept under standard housing conditions (21 ± 2 °C, 40-50% humidity, food and water ad libitum) with a 12:12 light-dark cycle at the Leibniz Institute for Experimental Virology in Hamburg, Germany. For SARS-CoV-2 infection, hamsters were anaesthetized with 150 mg/kg ketamine and 10 mg kg-1 xylazine by intraperitoneal injection. Male and female golden hamsters (8-10 weeks old) were purchased from Janvier. All animals were kept under standard housing conditions (21 ± 2 °C, 40-50% humidity, food and water ad libitum) with a 12:12 light-dark cycle at the Leibniz Institute for Experimental Virology in Hamburg, Germany. For SARS-CoV-2 infection, hamsters were anaesthetized with 150 mg/kg ketamine and 10 mg kg-1 xylazine by intraperitoneal injection. For letrozole treatment, male and female hamsters received a final dose of 0.36 mg kg-1 d-1 or 0.18 mg kg-1 d-1 letrozole (dissolved in DMSO, Sigma-Aldrich, L6545) diluted in sterile saline (Braun), respectively, by oral gavage (stainless-steel gavaging needles) at 3 h and day 1 to 3 post infection (p.i.). From day 4 to 8 p.i., hamsters received letrozole via the drinking water as water gel packages (Necta) supplemented with 1% glucose and a final concentration of 0.0018 mg ml-1 or 0.0036 mg ml-1 letrozole for female and male hamsters, respectively. As control, hamsters were treated with DMSO as vehicle. Viral RNA was isolated from homogenized organs using the QIAamp Viral RNA Mini Kit (QIAGEN) according to the manufacturer’s instructions. Preparation of stranded cDNA libraries was performed with Illumina Stranded mRNA Prep, Ligation kit, starting with 1000 ng total RNA according to the manufacturer’s instructions.

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: female

characteristic: sex

text: Syrian hamster

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-11162:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Biotechnology, Bielefeld University

characteristic: INSDC center name

text: public

text: E-MTAB-11162:Sample 2

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: normal

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 2


E-MTAB-11162:Sample 3

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11162:Sample 3

characteristic: Submitter Id

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: normal

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 3


E-MTAB-11162:Sample 4

text: public

text: E-MTAB-11162:Sample 4

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 4


E-MTAB-11162:Sample 5

text: public

text: E-MTAB-11162:Sample 5

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: normal

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: female

characteristic: sex

text: Syrian hamster

characteristic: strain

text: Sample 5


E-MTAB-11162:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 6

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 6

characteristic: title


E-MTAB-11162:Sample 7

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11162:Sample 7

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 7


E-MTAB-11162:Sample 8

text: public

text: E-MTAB-11162:Sample 8

characteristic: Submitter Id

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

characteristic: common name

characteristic: description

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 8


E-MTAB-11162:Sample 9

text: public

text: E-MTAB-11162:Sample 9

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: female

characteristic: sex

text: Syrian hamster

text: Sample 9


E-MTAB-11162:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 10

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

characteristic: strain

text: Sample 10


E-MTAB-11162:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11162:Sample 11

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 11

characteristic: title


E-MTAB-11162:Sample 12

text: public

characteristic: SRA accession

text: E-MTAB-11162:Sample 12

characteristic: Submitter Id

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

characteristic: common name

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 12


E-MTAB-11162:Sample 13

text: public

text: E-MTAB-11162:Sample 13

text: 8 to 10

text: ArrayExpress

text: golden hamster

characteristic: description

text: coronavirus infectious disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: female

text: Syrian hamster

text: Sample 13


E-MTAB-11162:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 14

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

characteristic: sex

text: Syrian hamster

text: Sample 14


E-MTAB-11162:Sample 15

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11162:Sample 15

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: female

text: Syrian hamster

characteristic: strain

text: Sample 15


E-MTAB-11162:Sample 16

text: public

characteristic: SRA accession

text: E-MTAB-11162:Sample 16

characteristic: Submitter Id

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

text: normal

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 16

characteristic: title


E-MTAB-11162:Sample 17

text: public

text: E-MTAB-11162:Sample 17

text: 8 to 10

text: ArrayExpress

text: golden hamster

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 17


E-MTAB-11162:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 18

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: normal

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 18


E-MTAB-11162:Sample 19

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11162:Sample 19

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: normal

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

characteristic: sex

text: Syrian hamster

text: Sample 19


E-MTAB-11162:Sample 20

text: public

characteristic: SRA accession

text: E-MTAB-11162:Sample 20

characteristic: Submitter Id

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

text: normal

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

characteristic: strain

text: Sample 20


E-MTAB-11162:Sample 21

text: public

text: E-MTAB-11162:Sample 21

text: 8 to 10

text: ArrayExpress

text: golden hamster

characteristic: common name

characteristic: description

text: coronavirus infectious disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 21

characteristic: title


E-MTAB-11162:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 22

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 22


E-MTAB-11162:Sample 23

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11162:Sample 23

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 23


E-MTAB-11162:Sample 24

text: public

characteristic: SRA accession

text: E-MTAB-11162:Sample 24

characteristic: Submitter Id

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

characteristic: sex

text: Syrian hamster

text: Sample 24


E-MTAB-11162:Sample 25

text: public

text: E-MTAB-11162:Sample 25

text: 8 to 10

text: ArrayExpress

text: golden hamster

characteristic: common name

characteristic: description

text: coronavirus infectious disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

characteristic: strain

text: Sample 25


E-MTAB-11162:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 26

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 26

characteristic: title


E-MTAB-11162:Sample 27

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11162:Sample 27

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

characteristic: organism

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 27


E-MTAB-11162:Sample 28

text: public

characteristic: SRA accession

text: E-MTAB-11162:Sample 28

characteristic: Submitter Id

text: 8 to 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

characteristic: organism part

text: Mesocricetus auratus

text: male

text: Syrian hamster

text: Sample 28


E-MTAB-11162:Sample 29

text: public

text: E-MTAB-11162:Sample 29

text: 8 to 10

text: ArrayExpress

text: golden hamster

characteristic: common name

characteristic: description

text: coronavirus infectious disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

characteristic: sex

text: Syrian hamster

text: Sample 29


E-MTAB-11162:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11162:Sample 30

text: 8 to 10

text: ArrayExpress

text: golden hamster

text: coronavirus infectious disease

text: wild type genotype

text: Mesocricetus auratus

text: Mesocricetus auratus

text: lung

text: Mesocricetus auratus

text: male

text: Syrian hamster

characteristic: strain

text: Sample 30


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: not provided

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

text: not provided

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

text: not provided

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

tag: Namespace:MEDICAL UNIVERSITY GRAZ

text: analysis of the appendix archaeome (archaea-specific PCR) in a child/adolescent that suffered from acute appendicitis

text: digestive tract environment ENVO:01001187

characteristic: environment (biome)

text: intestine environment ENVO:2100002

characteristic: environment (feature)

text: endodermal part of digestive tract UBERON:0004185

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: Appendix

characteristic: host body product

text: gangrenous

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

characteristic: investigation type

text: MiSeq

characteristic: library construction method

text: PCR

characteristic: nucleic acid amplification

text: DNeasy PowerSoil Kit (Qiagen-Hilden,Germany)

characteristic: nucleic acid extraction

text: human gut metagenome

text: CAGCMGCCGCGGTAA & GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: Microbiome in acute appendicitis

characteristic: project name

text: human gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: V4 on 16S rRNA gene

characteristic: target gene

text: Human appendix tissue sample 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: analysis of the appendix mycobiome (funig-specific PCR) in a child/adolescent that suffered from acute appendicitis

characteristic: description

characteristic: environment (biome)

text: intestine environment ENVO:2100002

characteristic: environment (feature)

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Appendix

text: gangrenous

text: male

text: human-gut

text: eukaryote

text: MiSeq

text: PCR

text: human gut metagenome

characteristic: organism

text: GTGAATCATCGAATCTTTGAA & TCCTCCGCTTATTGATATGC

text: Microbiome in acute appendicitis

text: human gut metagenome

text: Illumina MiSeq

text: ITS2 on 23S rRNA gene

text: Human appendix tissue sample 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: analysis of the appendix microbiome (shotgun metagenome sequencing) in a child/adolescent that suffered from acute appendicitis; quality filtered, trimmed, host removed data

text: intestine environment ENVO:2100002

text: Austria

characteristic: geographic location (longitude)

characteristic: host age

text: Appendix

characteristic: host body product

text: gangrenous

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: TruSeq DNA PCR-Free

characteristic: library construction method

characteristic: nucleic acid extraction

text: human gut metagenome

text: Microbiome in acute appendicitis

characteristic: project name

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: unspecific

characteristic: target gene

text: Human appendix tissue sample 1

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: intestine environment ENVO:2100002

characteristic: environment (feature)

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Appendix

text: perforated

text: female

text: human-gut

text: MiSeq

text: PCR

characteristic: nucleic acid amplification

text: human gut metagenome

characteristic: organism

text: CAGCMGCCGCGGTAA & GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: Microbiome in acute appendicitis

text: human gut metagenome

text: Illumina MiSeq

text: V4 on 16S rRNA gene

text: Human appendix tissue sample 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: intestine environment ENVO:2100002

text: Austria

characteristic: geographic location (longitude)

characteristic: host age

text: Appendix

characteristic: host body product

text: perforated

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: eukaryote

characteristic: investigation type

text: MiSeq

characteristic: library construction method

text: PCR

characteristic: nucleic acid extraction

text: human gut metagenome

text: Microbiome in acute appendicitis

characteristic: project name

text: human gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: ITS2 on 23S rRNA gene

characteristic: target gene

text: Human appendix tissue sample 10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: analysis of the appendix microbiome (universal PCR) in a child/adolescent that suffered from acute appendicitis

characteristic: description

characteristic: environment (biome)

text: intestine environment ENVO:2100002

characteristic: environment (feature)

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Appendix

text: perforated

text: female

text: human-gut

text: MiSeq

text: PCR

characteristic: nucleic acid amplification

text: human gut metagenome

characteristic: organism

text: GTGYCAGCMGCCGCGGTAA & GGACTACNVGGGTWTCTAAT

characteristic: pcr primers

text: Microbiome in acute appendicitis

text: human gut metagenome

text: Illumina MiSeq

text: V4 on 16S rRNA gene

text: Human appendix tissue sample 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: intestine environment ENVO:2100002

text: Austria

characteristic: geographic location (longitude)

characteristic: host age

text: Appendix

characteristic: host body product

text: perforated

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: TruSeq DNA PCR-Free

characteristic: library construction method

characteristic: nucleic acid extraction

text: human gut metagenome

text: Microbiome in acute appendicitis

characteristic: project name

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: unspecific

characteristic: target gene

text: Human appendix tissue sample 10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: intestine environment ENVO:2100002

characteristic: environment (feature)

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Appendix

text: phlegmonous

text: male

text: human-gut

text: MiSeq

text: PCR

characteristic: nucleic acid amplification

text: human gut metagenome

characteristic: organism

text: CAGCMGCCGCGGTAA & GGACTACVSGGGTATCTAAT

characteristic: pcr primers

text: Microbiome in acute appendicitis

text: human gut metagenome

text: Illumina MiSeq

text: V4 on 16S rRNA gene

text: Human appendix tissue sample 11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: intestine environment ENVO:2100002

text: Austria

characteristic: geographic location (longitude)

characteristic: host age

text: Appendix

characteristic: host body product

text: phlegmonous

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: eukaryote

characteristic: investigation type

text: MiSeq

characteristic: library construction method

text: PCR

characteristic: nucleic acid extraction

text: human gut metagenome

text: Microbiome in acute appendicitis

characteristic: project name

text: human gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: ITS2 on 23S rRNA gene

characteristic: target gene

text: Human appendix tissue sample 11

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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