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text: Temperate deciduous forest

text: Area designated for waste storage

text: Biolocial waste material

text: United Kingdom

text: metagenome

text: microbial mat/biofilm

text: compost metagenome

text: Bioplastic Study

text: compost metagenome

text: SMRT-PacBio

text: Biofilm on Plastics


text: QUEEN'S UNIVERSITY BELFAST

text: public

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text: QUEEN'S UNIVERSITY BELFAST

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text: Biofilm on bioplastic (PHB) at week 2 of composting process.

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text: Area designated for waste storage

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text: Biolocial waste material

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text: Temperate deciduous forest

text: Area designated for waste storage

text: Biolocial waste material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

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text: compost metagenome

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text: Bioplastic Study

text: compost metagenome

text: SMRT-PacBio

text: Biofilm on Plastics

characteristic: title


text: QUEEN'S UNIVERSITY BELFAST

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characteristic: INSDC last update

text: public

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text: Biofilm on bioplastic (PHB) at week 4 of composting process.

text: Temperate deciduous forest

text: Area designated for waste storage

text: Biolocial waste material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

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text: microbial mat/biofilm

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text: Biofilm on Plastics


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text: QUEEN'S UNIVERSITY BELFAST

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text: Biofilm on plastic (HDPE) at week 4 of composting process.

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text: Area designated for waste storage

characteristic: environment (feature)

text: Biolocial waste material

text: United Kingdom

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text: compost metagenome

text: Bioplastic Study

text: compost metagenome

text: SMRT-PacBio

text: Biofilm on Plastics


text: QUEEN'S UNIVERSITY BELFAST

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text: public

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text: Biofilm on bioplastic (PHB) at week 8 of composting process.

text: Temperate deciduous forest

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text: Biolocial waste material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

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text: metagenome

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text: Bioplastic Study

text: compost metagenome

text: SMRT-PacBio

text: Biofilm on Plastics

characteristic: title


characteristic: ENA-CHECKLIST

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text: QUEEN'S UNIVERSITY BELFAST

text: public

text: Biofilm on plastic (HDPE) at week 8 of composting process.

text: Temperate deciduous forest

text: Area designated for waste storage

text: Biolocial waste material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

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text: Biofilm on Plastics


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text: Negative control

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text: Area designated for waste storage

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text: Biolocial waste material

text: United Kingdom

text: metagenome

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text: compost metagenome

text: SMRT-PacBio

text: Biofilm on Plastics


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: QUEEN'S UNIVERSITY BELFAST

text: public

text: Positive control - Zymo D6300

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text: Area designated for waste storage

text: Biolocial waste material

characteristic: environment (material)

text: United Kingdom

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text: metagenome

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

tag: Namespace:INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

text: Lobaria pulmonaria

characteristic: common name

text: Lobaria pulmonaria

text: Lobaria pulmonaria


text: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Lobaria pulmonaria

characteristic: description

text: Lobaria pulmonaria

text: Lobaria pulmonaria


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text: public

text: Lobaria pulmonaria

text: Control

text: Lobaria pulmonaria

text: Lobaria pulmonaria


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characteristic: External Id

text: Durham University

text: public

tag: Namespace:Durham University

text: Anona Galbraith & Soufiane Taleb

characteristic: collected by

text: River Wear, Durham City, UK

characteristic: geographic location (region and locality)

text: Escherichia phage vB_Eco_SPSP

text: Escherichia phage vB_Eco_SPSP

text: SPSP Genome


text: UNIVERSITY OF PERUGIA

text: public

tag: Namespace:UNIVERSITY OF PERUGIA

characteristic: collection date

text: Arctic-alpine desert

characteristic: environment (biome)

text: biocrust

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: soil crust metagenome

text: Bacterial communities in biocrust of Svalbard archipelago

characteristic: project name

text: soil crust metagenome

text: metabarcoding

characteristic: sequencing method

text: soil

characteristic: soil environmental package


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text: UNIVERSITY OF PERUGIA

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text: public

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characteristic: Submitter Id

text: Arctic-alpine desert, biocrust, soil

text: biocrust

text: soil

text: Svalbard

text: eukaryote

text: Metazoa environmental sample

characteristic: organism

text: Metazoan communities in biocrust of Svalbard archipelago

text: Metazoa environmental sample

text: metabarcoding

text: soil

characteristic: title


characteristic: External Id

text: UNIVERSITY OF PERUGIA

text: public

characteristic: collection date

text: Arctic-alpine desert

characteristic: environment (biome)

text: biocrust

characteristic: environment (feature)

text: soil

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text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: fungus metagenome

text: Fungal communities in biocrust of Svalbard archipelago

text: fungus metagenome

text: metabarcoding

text: soil


characteristic: ENA-CHECKLIST

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text: UDS

characteristic: INSDC center name

text: public

text: Kluyveromyces lactis, CLIB 419 isolate

characteristic: description

text: Kluyveromyces lactis

text: Kluyveromyces lactis

text: Kluyveromyces lactis, CLIB 419 isolate


text: UDS

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text: Kluyveromyces lactis, UCD 70-4 isolate

text: Kluyveromyces lactis

text: Kluyveromyces lactis

text: Kluyveromyces lactis, UCD 70-4 isolate


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text: UDS

text: public

text: Kluyveromyces lactis, UCD 71-75 isolate

text: Kluyveromyces lactis

characteristic: organism

text: Kluyveromyces lactis

text: Kluyveromyces lactis, UCD 71-75 isolate

characteristic: title


text: UDS

text: public

text: Kluyveromyces lactis, CLIB 1759 isolate

text: Kluyveromyces lactis

text: Kluyveromyces lactis

text: Kluyveromyces lactis, CLIB 1759 isolate


text: UDS

text: public

text: Kluyveromyces lactis, CLIB 1751 isolate

text: Kluyveromyces lactis

text: Kluyveromyces lactis

text: Kluyveromyces lactis, CLIB 1751 isolate


text: UDS

text: public

text: Kluyveromyces lactis, CLIB 640 isolate

text: Kluyveromyces lactis

text: Kluyveromyces lactis

text: Kluyveromyces lactis, CLIB 640 isolate


text: public

tag: Namespace:Ulsan National Institute of Science and Technology

text: Samples from the four spots nearby Gamak pond. Samples of genomic DNA from A spot were prepared using bead beating lysis or enzymatic lysis. Samples of genomic DNA from B and c spots were prepared by TA or students.

characteristic: isolation source

text: metagenome

text: metagenome

text: Genomic DNA of each spot in Gamak Pond for NextSeq


text: Ulsan National Institute of Science and Technology

text: public

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text: metagenome


text: public

text: Samples from the four spots nearby Gamak pond. Samples of genomic DNA from A spot were prepared using bead beating lysis or enzymatic lysis.

text: metagenome

text: metagenome

text: Genomic DNA of each spot in Gamak Pond for NovaSeq


text: University of Lubeck

text: public

tag: Namespace:University of Lubeck

text: house mouse

characteristic: common name

text: HFD

characteristic: diet

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characteristic: gender

text: Mus musculus

text: Mus musculus

text: MiSeq

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text: University of Lubeck

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text: University of Lubeck

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text: Mus musculus

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text: Mus musculus

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E-MTAB-11121:Retinal Organoids Day 171

text: UNIVERSITY OF CALIFORNIA, IRVINE

text: public

text: E-MTAB-11121:Retinal Organoids Day 171

tag: Namespace:UNIVERSITY OF CALIFORNIA, IRVINE

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: induced retinal cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: A total of 14 RtOgs on Day 57 (D57) and 12 RtOgs on D171 were dissociated using papain-based enzymatic digestion (Worthington papain dissociation NJ, USA). Cell viability was tested with 0.4% trypan blue in a hemocytometer (>90%). The concentration was adjusted to ~870 live cells/μl for day 171 samples and ~822 cells/μl for day 57 ones. The samples were prepared for scRNA-seq library within 5 minutes. The resulting gel-in-emulsions (GEMs) were transferred to PCR tubes and incubated in a Bio-Rad C1000 Thermocycler (Bio-Rad Laboratories, Hercules, CA) for the reverse transcription protocol. The GEMs were cleaned up using Dynabeads MyOne SILANE (Life Technologies, Carlsbad CA) and then amplified using 11 cycles according the 10X workflow. The cDNA was cleaned using 0.6X SPRIselect (Beckman Coulter, Indianapolis, IN) size selection and then quality control assays using Qubit DNA HS assay (Life Technologies, Carlsbad CA) and Agilent 2100 Bioanalyzer DNA HS (Agilent, Santa Clara, CA) were performed. The endogenous cDNA fraction was then processed according to the 10X workflow for library construction. The cDNA was fragmented, end repaired and then A-tailed. After a SPRIselect cleanup the adapters were ligated on the cDNA. Sample indexes were added by PCR and a double-sided size selection using SPRIselect was performed.

text: organoid culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: Retinal Organoids Day 171


E-MTAB-11121:Retinal Organoids Day 57

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CALIFORNIA, IRVINE

text: public

text: E-MTAB-11121:Retinal Organoids Day 57

text: ArrayExpress

text: induced retinal cell

text: human

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Retinal Organoids Day 57


text: Microbiota Center Amsterdam

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Microbiota Center Amsterdam

text: mouse gut metagenome

text: mouse gut metagenome

characteristic: subject id


characteristic: External Id

text: public

characteristic: INSDC status

text: Notho1_MZM_2018 ERC000011

characteristic: Project_name checklist_accession

characteristic: SRA accession

tag: Namespace:Masaryk University, Central European Institute of Technology (CEITEC)

text: turquoise killifish

text: individual no. 57, age 15 weeks, control tissue

characteristic: description

text: adult

characteristic: dev stage

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: M

characteristic: sex

text: MZM 04-10

characteristic: strain

text: muscle

characteristic: tissue type


text: Masaryk University, Central European Institute of Technology (CEITEC)

text: public

text: Notho1_MZM_2018 ERC000011

characteristic: Submitter Id

text: turquoise killifish

characteristic: common name

text: individual no. 57, age 15 weeks, extreme kidney enlargement (gr. 3-4)

text: adult

text: Nothobranchius furzeri

characteristic: organism

text: Nothobranchius furzeri

text: M

text: MZM 04-10

text: kidney

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text: Notho1_MZM_2018 ERC000011

text: turquoise killifish

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text: adult

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: M

text: MZM 04-10

text: muscle


characteristic: External Id

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text: public

text: Notho1_MZM_2018 ERC000011

text: turquoise killifish

text: individual no. 58, age 15 weeks, extreme kidney enlargement (gr. 4)

text: adult

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: M

text: MZM 04-10

text: kidney


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text: Notho1_MZM_2018 ERC000011

characteristic: Project_name checklist_accession

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text: turquoise killifish

text: individual no. 59, age 15 weeks, control tissue

text: adult

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: M

text: MZM 04-10

text: muscle


text: public

text: Notho1_MZM_2018 ERC000011

text: turquoise killifish

text: individual no. 59, age 15 weeks, extreme kidney enlargement (gr. 4)

characteristic: description

text: adult

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text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: M

characteristic: sex

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text: public

text: Notho1_MZM_2018 ERC000011

characteristic: Submitter Id

text: turquoise killifish

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text: adult

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: F

text: MZM 04-10

characteristic: strain

text: muscle

characteristic: tissue type


text: public

text: Notho1_MZM_2018 ERC000011

text: turquoise killifish

characteristic: common name

text: individual no. 60, age 15 weeks, extreme kidney enlargement (gr. 4)

text: adult

text: Nothobranchius furzeri

characteristic: organism

text: Nothobranchius furzeri

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text: MZM 04-10

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