characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Redbreast tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 5 Pond 3

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF EXETER

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Banded tilapia

text: omnivorous

text: healthy

unit: cm

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

text: 98 �C for 30 seconds; 30 cycles of 98 �C for 10 seconds, 60 �C for 30 seconds, 72 �C for 30 seconds; and a final extension of 72 �C for 2 minutes

characteristic: pcr conditions

text: 1391F (5'-GTACACACCGCCCGTC-3') and EukBr (5'-TGATCCTTCTGCAGGTTCACCTAC-3')

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 1 Pond 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Redbreast tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 6 Pond 3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Banded tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 2 Pond 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Banded tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 3 Pond 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Redbreast tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 4 Pond 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Redbreast tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 5 Pond 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Redbreast tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 1 Pond 5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Redbreast tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 7 Pond 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Redbreast tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 2 Pond 5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Redbreast tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 8 Pond 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Redbreast tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 3 Pond 5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Blantyre

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Redbreast tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 4 Pond 5

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Blantyre

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Redbreast tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 5 Pond 5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Maldeco, Mangochi

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 1 Pond 6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Maldeco, Mangochi

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 2 Pond 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Maldeco, Mangochi

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 4 Pond 6

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Maldeco, Mangochi

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 5 Pond 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Maldeco, Mangochi

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 2 Pond 7

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tilapia fish skin swab

text: freshwater biome (ENVO:00000873)

text: pond (ENVO:00000033)

characteristic: environment (feature)

text: skin environment (ENVO:2100003)

characteristic: environment (material)

text: Malawi

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Maldeco, Mangochi

characteristic: geographic location (region and locality)

text: skin mucous

text: fish skin

text: Tilapia

text: omnivorous

text: healthy

text: host-associated

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: fish metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: Tilapia skin microbiomes Malawi

characteristic: project name

text: swab

characteristic: sample collection device or method

text: stored in RNAlater

characteristic: sample material processing

text: fish metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Tilapia 3 Pond 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tilapia fish skin swab

characteristic: description

text: freshwater biome (ENVO:00000873)

characteristic: environment (biome)

text: pond (ENVO:00000033)

text: skin environment (ENVO:2100003)

text: Malawi

text: not collected

text: not collected

text: Maldeco, Mangochi

text: skin mucous

characteristic: host body product

text: fish skin

characteristic: host body site

text: Tilapia

characteristic: host common name

text: omnivorous

characteristic: host diet

text: healthy

characteristic: host disease status

characteristic: host length

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: fish metagenome

characteristic: organism

text: Tilapia skin microbiomes Malawi

text: swab

text: stored in RNAlater

text: fish metagenome

text: Illumina MiSeq

text: 18S rRNA

characteristic: target subfragment

text: Tilapia 4 Pond 7

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Random sampling

characteristic: Sampling Strategy

text: IMS-10061-CVDP-D8CD8F6B-FA74-4E89-9C76-486424C9313F

tag: Namespace:Robert Koch Institute

text: RKI-OSEDA

characteristic: broker name

text: amedes MVZ Jena, Felsbachstraße 5; 07745 Jena

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Molecular surveillance of SARS-CoV-2 in Germany


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Norway rat

characteristic: common name

text: Male 15month sample 1 left Substantia nigra

characteristic: description

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

characteristic: title


text: UNIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Norway rat

text: Male 15month sample 1 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 15month sample 2 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 15month sample 2 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 15month sample 3 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 15month sample 3 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 15month sample 4 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 15month sample 4 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 1 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 1 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 2 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 2 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 3 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 3 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 4 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Male 6month sample 4 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 5 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 5 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 6 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 6 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 7 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 7 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 8 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 8 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 9 left Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: Norway rat

text: Female 6month sample 9 right Substantia nigra

text: Rattus norvegicus

text: Rattus norvegicus


text: UNIST

text: public

text: human

text: SH-SY5Y Non-treated media 4 passage challenge sample 1

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y Non-treated media 4 passage challenge sample 2

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y Non-treated media 4 passage challenge sample 3

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y 1mM Ferrous chloride treated media 4 passage challenge sample 1

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y 1mM Ferrous chloride treated media 4 passage challenge sample 2

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y 1mM Ferrous chloride treated media 4 passage challenge sample 3

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y 2mM Ferrous chloride treated media 4 passage challenge sample 1

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y 2mM Ferrous chloride treated media 4 passage challenge sample 2

text: Homo sapiens

text: Homo sapiens


text: UNIST

text: public

text: human

text: SH-SY5Y 2mM Ferrous chloride treated media 4 passage challenge sample 3

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Max Planck Institute for Evolutionary Biology

text: Seeding population

text: Escherichia coli str. K-12 substr. DH10B

characteristic: strain

characteristic: sub strain

text: Amplicon sequencing of random sequence library in E. coli


text: Max Planck Institute for Evolutionary Biology

text: public

text: Timepoint 1, Replicate 1


text: public

text: Timepoint 1, Replicate 2


text: public

text: Timepoint 1, Replicate 3


text: public

text: Timepoint 1, Replicate 4


text: public

text: Timepoint 1, Replicate 5


text: public

text: Timepoint 2, Replicate 1


text: public

text: Timepoint 2, Replicate 2


text: public

text: Timepoint 2, Replicate 3


text: public

text: Timepoint 2, Replicate 4


text: public

text: Timepoint 2, Replicate 5


text: public

text: Timepoint 3, Replicate 1


text: public

text: Timepoint 3, Replicate 2


text: public

text: Timepoint 3, Replicate 3


text: public

text: Timepoint 3, Replicate 4


text: public

text: Timepoint 3, Replicate 5


text: public

text: Timepoint 4, Replicate 1


text: public

text: Timepoint 4, Replicate 2


text: public

text: Timepoint 4, Replicate 3


text: public

text: Timepoint 4, Replicate 4


text: public

text: Timepoint 4, Replicate 5


E-MTAB-10201:36 kb deletion 1

text: UNIVERSITY OF CHICAGO

text: public

text: E-MTAB-10201:36 kb deletion 1

tag: Namespace:UNIVERSITY OF CHICAGO

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

characteristic: cell line

text: hippocampal neuron

characteristic: cell type

text: human

text: Protocols: Human induced pluripotent stem cells (iPSCs) (Findiv 24382, Hutterites) from a lymphoblastoid cell line were differentiated into hypothalamic arcuate-like neurons, as previously described by doi:10.1172/JCI79220 Not applicable See doi:10.1172/JCI79220 See doi:10.1172/JCI79220 We used the Chromium Single Cell 5′ Library & Gel Bead Kit v2 (10X Genomics) We used the Chromium Single Cell 5′ Library & Gel Bead Kit v2 (10X Genomics)

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: European

characteristic: ethnic group

text: deletion of hg19:chr16:53,796,691-53,832,771

characteristic: genetic modification

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex

text: 36 kb deletion 1


E-MTAB-10201:36 kb deletion 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CHICAGO

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-10201:36 kb deletion 2

characteristic: Submitter Id

text: ArrayExpress

text: lymphoblastoid cell line

text: hippocampal neuron

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: European

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: induced pluripotent stem cell

text: Homo sapiens

text: female

text: 36 kb deletion 2

characteristic: title


E-MTAB-10201:36 kb deletion 3

text: UNIVERSITY OF CHICAGO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10201:36 kb deletion 3

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

characteristic: cell line

text: hippocampal neuron

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: European

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: induced pluripotent stem cell

text: Homo sapiens

text: female

text: 36 kb deletion 3


E-MTAB-10201:36 kb deletion 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CHICAGO

text: public

text: E-MTAB-10201:36 kb deletion 4

text: ArrayExpress

text: lymphoblastoid cell line

text: hippocampal neuron

text: human

text: adult

text: normal

text: European

characteristic: genetic modification

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex

text: 36 kb deletion 4


E-MTAB-10201:wild-type 1

text: UNIVERSITY OF CHICAGO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10201:wild-type 1

characteristic: Submitter Id

text: ArrayExpress

text: lymphoblastoid cell line

text: hippocampal neuron

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: European

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: induced pluripotent stem cell

text: Homo sapiens

text: female

text: wild-type 1

characteristic: title


E-MTAB-10201:wild-type 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CHICAGO

text: public

characteristic: INSDC status

text: E-MTAB-10201:wild-type 2

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

characteristic: cell line

text: hippocampal neuron

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: European

characteristic: ethnic group

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: induced pluripotent stem cell

text: Homo sapiens

text: female

text: wild-type 2


E-MTAB-10201:wild-type 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CHICAGO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10201:wild-type 3

text: ArrayExpress

text: lymphoblastoid cell line

text: hippocampal neuron

text: human

text: adult

text: normal

text: European

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex

text: wild-type 3


E-MTAB-10201:wild-type 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CHICAGO

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10201:wild-type 4

characteristic: Submitter Id

text: ArrayExpress

text: lymphoblastoid cell line

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characteristic: common name

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text: adult

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characteristic: organism

text: Homo sapiens

text: blood

text: induced pluripotent stem cell

text: Homo sapiens

text: female

text: wild-type 4

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

tag: Namespace:Latvian Biomedical Research and Study Centre

text: post-eradication

text: human gut metagenome

text: human gut metagenome


text: Latvian Biomedical Research and Study Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: post-eradication

text: human gut metagenome

text: human gut metagenome


text: public

text: pre-eradication

text: human gut metagenome

text: human gut metagenome


text: public

tag: Namespace:University of Zurich Institute of Anatomy

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Briefly, acute disease was induced in 10 week old mice by the treatment of mice with 2.5% DSS in their drinking water for 4 days. Middle colonic tissues in lenght of 1cm were excised. General procedure: The tissue samples were homogenized in RLT buffer (Quiagen). Total RNA was isolated with Qiagen RNA extraction kits (Qiagen, 74104) following the manufacturer’s instructions. RNAseq from total RNA was performed by Novogene Europe. A total amount of 1 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. Briefly, mRNA was purified from total RNA using poly-T oligo- attached magnetic beads. Fragmentation was carried out using divalent cations under elevated temperature in NEBNext First Strand Synthesis Reaction Buffer (5X). First strand cDNA was synthesized using random hexamer primer and M-MuLV Reverse Transcriptase (RNase H-). Second strand cDNA synthesis was subsequently performed using DNA Polymerase I and RNase H. Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3’ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 150~200 bp in length, the library fragments were purified with AMPure XP system (Beckman Coulter, Beverly, USA). Then 3 µl USER Enzyme (NEB, USA) was used with size-selected, adaptor ligated cDNA at 37 °C for 15 min followed by 5 min at 95 °C before PCR. Then PCR was performed with Phusion High-Fidelity DNA polymerase, Universal PCR primers and Index (X) Primer. At last, PCR products were purified (AMPure XP system) and library quality was assessed on the Agilent Bioanalyzer 2100 system.

text: adult

characteristic: developmental stage

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

characteristic: genotype

text: SK1599 LL

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: NCR1 driven Hif1a knockout

characteristic: phenotype

text: Mus musculus

text: female

text: dextran sulfate sodium, 2.5 percent

characteristic: stimulus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Zurich Institute of Anatomy

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

text: SK1600 RR

text: Mus musculus

text: Mus musculus

text: colon

text: NCR1 driven Hif1a knockout

text: Mus musculus

text: female

characteristic: sex

text: dextran sulfate sodium, 2.5 percent


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

text: SK1603 L/R

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: NCR1 driven Hif1a knockout

text: Mus musculus

text: female

text: dextran sulfate sodium, 2.5 percent

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

characteristic: genotype

text: SK1597 R

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female

text: dextran sulfate sodium, 2.5 percent

characteristic: stimulus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: SK1598 L/R

text: Mus musculus

text: Mus musculus

text: colon

text: wild type phenotype

text: Mus musculus

text: female

characteristic: sex

text: dextran sulfate sodium, 2.5 percent


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: SK1602 R

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: wild type phenotype

text: Mus musculus

text: female

text: dextran sulfate sodium, 2.5 percent

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Middle colonic tissues in length of 1cm were excised. General procedure: The tissue samples were homogenized in RLT buffer (Quiagen). Total RNA was isolated with Qiagen RNA extraction kits (Qiagen, 74104) following the manufacturer’s instructions. A total amount of 1 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. Briefly, mRNA was purified from total RNA using poly-T oligo- attached magnetic beads. Fragmentation was carried out using divalent cations under elevated temperature in NEBNext First Strand Synthesis Reaction Buffer (5X). First strand cDNA was synthesized using random hexamer primer and M-MuLV Reverse Transcriptase (RNase H-). Second strand cDNA synthesis was subsequently performed using DNA Polymerase I and RNase H. Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3’ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 150~200 bp in length, the library fragments were purified with AMPure XP system (Beckman Coulter, Beverly, USA). Then 3 µl USER Enzyme (NEB, USA) was used with size-selected, adaptor ligated cDNA at 37 °C for 15 min followed by 5 min at 95 °C before PCR. Then PCR was performed with Phusion High-Fidelity DNA polymerase, Universal PCR primers and Index (X) Primer. At last, PCR products were purified (AMPure XP system) and library quality was assessed on the Agilent Bioanalyzer 2100 system.

text: adult

characteristic: developmental stage

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

characteristic: genotype

text: SK1136 R

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: NCR1 driven knockout of Hif1a

characteristic: phenotype

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

text: SK1138 LL

text: Mus musculus

text: Mus musculus

text: colon

text: NCR1 driven knockout of Hif1a

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

text: SO8063 L

text: Mus musculus

text: Mus musculus

text: colon

text: NCR1 driven knockout of Hif1a

text: Mus musculus

text: female

characteristic: sex


text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

characteristic: genotype

text: SK1135 L

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

characteristic: organism part

text: wild type phenotype

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: SK1137 L/R

text: Mus musculus

text: Mus musculus

text: colon

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: SO8064 R

text: Mus musculus

text: Mus musculus

text: colon

text: wild type phenotype

text: Mus musculus

text: female


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Jejenum tissues in lenght of 1cm were excised. General procedure: The tissue samples were homogenized in RLT buffer (Quiagen). Total RNA was isolated with Qiagen RNA extraction kits (Qiagen, 74104) following the manufacturer’s instructions. RNAseq from total RNA was performed by Novogene Europe. A total amount of 1 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. Briefly, mRNA was purified from total RNA using poly-T oligo- attached magnetic beads. Fragmentation was carried out using divalent cations under elevated temperature in NEBNext First Strand Synthesis Reaction Buffer (5X). First strand cDNA was synthesized using random hexamer primer and M-MuLV Reverse Transcriptase (RNase H-). Second strand cDNA synthesis was subsequently performed using DNA Polymerase I and RNase H. Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3’ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 150~200 bp in length, the library fragments were purified with AMPure XP system (Beckman Coulter, Beverly, USA). Then 3 µl USER Enzyme (NEB, USA) was used with size-selected, adaptor ligated cDNA at 37 °C for 15 min followed by 5 min at 95 °C before PCR. Then PCR was performed with Phusion High-Fidelity DNA polymerase, Universal PCR primers and Index (X) Primer. At last, PCR products were purified (AMPure XP system) and library quality was assessed on the Agilent Bioanalyzer 2100 system.

text: adult

characteristic: developmental stage

text: (NCR1-Cre) x C57BL/6-VHL(loxP)

characteristic: genotype

text: SK0930 R

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: jejunum

text: NCR1 driven knockout of VHL

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: (NCR1-Cre) x C57BL/6-VHL(loxP)

text: SK0932 LL

text: Mus musculus

text: Mus musculus

text: jejunum

characteristic: organism part

text: NCR1 driven knockout of VHL

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: (NCR1-Cre) x C57BL/6-VHL(loxP)

text: SK0461 L/R

text: Mus musculus

text: Mus musculus

text: jejunum

text: NCR1 driven knockout of VHL

characteristic: phenotype

text: Mus musculus

text: female

characteristic: strain


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: SK0929 L

characteristic: individual

text: Mus musculus

text: Mus musculus

text: jejunum

text: wild type phenotype

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: SK0931 L/R

text: Mus musculus

characteristic: organism

text: Mus musculus

text: jejunum

text: wild type phenotype

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: SK0461 L/R

text: Mus musculus

text: Mus musculus

text: jejunum

characteristic: organism part

text: wild type phenotype

text: Mus musculus

text: female

characteristic: title


text: Klebsiella michiganensis

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: collection date

text: Klebsiella michiganensis

characteristic: common name

text: United Kingdom

characteristic: country

text: disease

characteristic: host status

text: Wound swab

characteristic: isolation source

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: human

characteristic: specific host

characteristic: strain

characteristic: subject id


text: Klebsiella michiganensis

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella michiganensis

text: United Kingdom

text: carriage

text: Screen swab

text: Klebsiella michiganensis

characteristic: organism

text: Klebsiella michiganensis

text: human


text: Klebsiella michiganensis

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Klebsiella michiganensis

text: United Kingdom

text: disease

text: Urine

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: human


text: Klebsiella oxytoca

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: collection date

text: Klebsiella oxytoca

characteristic: common name

text: United Kingdom

characteristic: country

text: disease

text: Sputum

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: human

characteristic: title


text: Klebsiella oxytoca

text: SC

text: public

text: Klebsiella oxytoca

text: United Kingdom

text: disease

characteristic: host status

text: Urine

characteristic: isolation source

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: human

characteristic: specific host

characteristic: strain

characteristic: subject id


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella pneumoniae

text: United Kingdom

text: disease

text: Wound swab

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human


text: Klebsiella pneumoniae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae

text: United Kingdom

text: disease

text: Urine

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: human


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: INSDC status

characteristic: collection date

text: Klebsiella pneumoniae

characteristic: common name

text: United Kingdom

characteristic: country

text: disease

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: United Kingdom

text: disease

characteristic: host status

text: Blood

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human

characteristic: specific host

characteristic: strain

characteristic: title


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae

text: United Kingdom

text: disease

text: Wound swab (abdomen)

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human

characteristic: subject id


text: Klebsiella pneumoniae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Klebsiella pneumoniae

text: United Kingdom

text: carriage

text: Screen swab

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: INSDC status

characteristic: collection date

text: Klebsiella pneumoniae

characteristic: common name

text: United Kingdom

text: disease

text: Sputum

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: human


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: United Kingdom

characteristic: country

text: disease

characteristic: host status

text: Wound swab (groin L)

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human

characteristic: specific host

characteristic: strain


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae

text: United Kingdom

text: disease

text: Pus

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human

characteristic: title


text: Klebsiella pneumoniae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae

text: United Kingdom

text: carriage

text: Rectal swab

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human

characteristic: subject id


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Klebsiella pneumoniae

characteristic: common name

text: United Kingdom

text: disease

text: Wound drain fluid

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: United Kingdom

characteristic: country

text: disease

characteristic: host status

text: Urine (midstream specimen of urine)

characteristic: isolation source

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: human

characteristic: specific host


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae

text: United Kingdom

text: disease

text: Wound

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human

characteristic: strain


text: Klebsiella variicola

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella variicola

text: United Kingdom

text: Screen swab

text: Klebsiella variicola

text: Klebsiella variicola

text: environmental

characteristic: title


text: Ravi Kant

text: public

characteristic: INSDC status

tag: Namespace:Ravi Kant

characteristic: Submitter Id

text: HUSLAB

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Finland

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

characteristic: genotype

text: SK1136 R

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: jejunum

characteristic: organism part

text: NCR1 driven knockout of Hif1a

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

text: SK1138 LL

text: Mus musculus

text: Mus musculus

text: jejunum

text: NCR1 driven knockout of Hif1a

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: (NCR1-Cre) x C57BL/6-Hif1a(loxP)

text: SO8063 L

text: Mus musculus

text: Mus musculus

text: jejunum

text: NCR1 driven knockout of Hif1a

text: Mus musculus

text: female


text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: SK1135 L

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: jejunum

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: SK1137 L/R

text: Mus musculus

text: Mus musculus

text: jejunum

text: wild type phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kelly Doran laboratory

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Kelly Doran laboratory

characteristic: Submitter Id

text: 1 ERC000028

characteristic: collection date

text: control

text: USA

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: CSF

characteristic: isolate

text: human

characteristic: isolation source

text: Streptococcus agalactiae COH1

text: Streptococcus agalactiae COH1

text: III

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Kelly Doran laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2 ERC000028

text: control

characteristic: description

text: USA

text: diseased

text: Homo sapiens

text: CSF

text: human

text: Streptococcus agalactiae COH1

characteristic: organism

text: Streptococcus agalactiae COH1

text: III


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kelly Doran laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 3 ERC000028

text: control

text: USA

text: diseased

text: Homo sapiens

text: CSF

text: human

text: Streptococcus agalactiae COH1

text: Streptococcus agalactiae COH1

text: III

characteristic: strain


text: Kelly Doran laboratory

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 1 ERC000028

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: CSF

text: human

text: Streptococcus agalactiae COH1

text: Streptococcus agalactiae COH1

text: III


text: Kelly Doran laboratory

text: public

text: 2 ERC000028

text: USA

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: CSF

characteristic: isolate

text: human

characteristic: isolation source

text: Streptococcus agalactiae COH1

text: Streptococcus agalactiae COH1

text: III

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Kelly Doran laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 3 ERC000028

characteristic: description

text: USA

text: diseased

text: Homo sapiens

text: CSF

text: human

text: Streptococcus agalactiae COH1

text: Streptococcus agalactiae COH1

text: III


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: SIB

characteristic: broker name

text: Laboratorio di Diagnostica Molecolare SA Lugano, c/o Cardiocentro Ticino

characteristic: collecting institution

text: Martinetti Lucchini Gladys, Valeria Spina

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26386635/2021

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26394067/2021

characteristic: isolate

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26396364/2021


E-MTAB-11225:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-11225:Sample 2

tag: Namespace:Wellcome Sanger Institute

characteristic: Submitter Id

text: ArrayExpress

text: peripheral blood mononuclear cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: PBMCs from two donors were acquired from a LeukoLab (Clinical division of AllCells). Frozen PBMC samples were thawed quickly at 37 °C in a water bath. Two pools made for technical duplicates with ~500,000 cells for each donor per pool (50/50). Nuclei isolation, transposition, ATAC-seq and Gene Expression (GEX) sequencing libraries construction performed according to the manufacturer’s Demonstrated protocol (CG000365 Rev A; 10X Genomics) and Next GEM Single Cell Multiome ATAC and Gene Expression user guide (CG000338 Rev A; 10X Genomics). Frozen PBMC samples were thawed quickly at 37 °C in a water bath. Two pools made for technical duplicates with ~500,000 cells for each donor per pool (50/50). Nuclei isolation, transposition, ATAC-seq and Gene Expression (GEX) sequencing libraries construction performed according to the manufacturer’s Demonstrated protocol (CG000365 Rev A; 10X Genomics) and Next GEM Single Cell Multiome ATAC and Gene Expression user guide (CG000338 Rev A; 10X Genomics).

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Adelaide

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Adelaide

text: horse

text: Horse fossil from Natural Trap Cave, WY

text: Equus caballus

text: Equus caballus

characteristic: title


IMNH 50001/17237

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Adelaide

text: public

text: IMNH 50001/17237

text: horse

text: Horse fossil from American Falls Reservoir, ID

text: Equus caballus

text: Equus caballus


text: University of Adelaide

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Horse fossil from Natural Trap Cave, WY

text: Haringtonhippus francisci

text: Haringtonhippus francisci


text: University of Adelaide

text: public

characteristic: Submitter Id

text: Camel fossil from Natural Trap Cave, WY

text: Camelops hesternus

text: Camelops hesternus


IMNH 2027/14846

text: University of Adelaide

text: public

text: IMNH 2027/14846

text: Camel fossil from Spider Cave, ID

text: Camelops hesternus

text: Camelops hesternus


text: University of Adelaide

text: public

text: Camel fossil from Mineral Hill Cave, NV

text: Camelops hesternus

text: Camelops hesternus


text: Waterford Institute of Technology

text: public

tag: Namespace:Waterford Institute of Technology

text: not provided

text: faeces extracted with 10 mins bead beating

text: piggery

characteristic: environment (biome)

text: pig manure

characteristic: environment (feature)

text: fecal material ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: investigation type

text: miscellaneous natural or artifical environment

characteristic: miscellaneous environmental package

text: pig gut metagenome

text: Optimisation of a bead beating procedure for simultaneous extraction of bacterial and fungal DNA from pig faeces and liquid feed for 16S and ITS2 rDNA amplicon sequencing

characteristic: project name

text: pig gut metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: 16S rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: liquid feed extracted with 10 mins bead beating

characteristic: description

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome

text: Illumi MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: negative extraction control

text: not applicable

characteristic: environment (biome)

text: not applicable

characteristic: environment (feature)

text: negative extraction control ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: pig gut metagenome

text: pig gut metagenome

text: Illumi MiSeq

text: 16S rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: faeces extracted with no bead beating

text: piggery

text: pig manure

text: fecal material ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: 16S rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: liquid feed extracted with no bead beating

characteristic: description

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome

text: Illumi MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: mock community extracted with no bead beating

text: not applicable

characteristic: environment (biome)

text: not applicable

characteristic: environment (feature)

text: mock community culture ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: synthetic metagenome

text: synthetic metagenome

text: Illumi MiSeq

text: 16S rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: faeces extracted with 3 mins bead beating

text: piggery

text: pig manure

text: fecal material ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: 16S rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: liquid feed extracted with 3 mins bead beating

characteristic: description

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome

text: Illumi MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: mock community extracted with 3 mins bead beating

text: not applicable

characteristic: environment (biome)

text: not applicable

characteristic: environment (feature)

text: mock community culture ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: synthetic metagenome

text: synthetic metagenome

text: Illumi MiSeq

text: 16S rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: faeces extracted with 15 mins bead beating

text: piggery

text: pig manure

text: fecal material ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: 16S rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: liquid feed extracted with 15 mins bead beating

characteristic: description

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

text: not collected

text: food metagenome

characteristic: organism

text: food metagenome

text: Illumi MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: mock community extracted with 15 mins bead beating

text: not applicable

characteristic: environment (biome)

text: not applicable

characteristic: environment (feature)

text: mock community culture ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: synthetic metagenome

text: synthetic metagenome

text: Illumi MiSeq

text: 16S rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: mock community extracted with 10 mins bead beating

text: not applicable

text: not applicable

text: mock community culture ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: synthetic metagenome

characteristic: project name

text: synthetic metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: 16S rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: faeces extracted with 20 mins bead beating

characteristic: description

text: piggery

text: pig manure

text: fecal material ERC000025

text: Ireland

text: not collected

text: not collected

text: pig gut metagenome

characteristic: organism

text: pig gut metagenome

text: Illumi MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: liquid feed extracted with 20 mins bead beating

text: piggery

characteristic: environment (biome)

text: animal feed

characteristic: environment (feature)

text: liquid feed ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: food metagenome

text: food metagenome

text: Illumi MiSeq

text: 16S rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: mock community extracted with 20 mins bead beating

text: not applicable

text: not applicable

text: mock community culture ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: synthetic metagenome

characteristic: project name

text: synthetic metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: 16S rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: negative library preparation control

characteristic: description

text: not applicable

text: not applicable

text: negative library preparation control ERC000025

text: Ireland

text: not collected

text: not collected

text: pig gut metagenome

characteristic: organism

text: pig gut metagenome

text: Illumi MiSeq

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: faeces extracted with 10 mins bead beating

text: piggery

characteristic: environment (biome)

text: pig manure

characteristic: environment (feature)

text: fecal material ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: eukaryote

text: pig gut metagenome

text: pig gut metagenome

text: Illumi MiSeq

text: ITS rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: miscellaneous natural or artifical environment

characteristic: miscellaneous environmental package

text: food metagenome

characteristic: project name

text: food metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: ITS rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: negative extraction control

characteristic: description

text: not applicable

text: not applicable

text: negative extraction control ERC000025

text: Ireland

text: not collected

text: not collected

text: eukaryote

text: pig gut metagenome

characteristic: organism

text: Optimisation of a bead beating procedure for simultaneous extraction of bacterial and fungal DNA from pig faeces and liquid feed for 16S and ITS2 rDNA amplicon sequencing

text: pig gut metagenome

text: Illumi MiSeq

text: ITS rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: faeces extracted with no bead beating

text: piggery

characteristic: environment (biome)

text: pig manure

characteristic: environment (feature)

text: fecal material ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: eukaryote

text: pig gut metagenome

text: pig gut metagenome

text: Illumi MiSeq

text: ITS rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

characteristic: project name

text: food metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: ITS rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

characteristic: description

text: not applicable

text: not applicable

text: mock community culture ERC000025

text: Ireland

text: not collected

text: not collected

text: eukaryote

text: synthetic metagenome

characteristic: organism

text: synthetic metagenome

text: Illumi MiSeq

text: ITS rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: piggery

characteristic: environment (biome)

text: pig manure

characteristic: environment (feature)

text: fecal material ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: eukaryote

text: pig gut metagenome

text: pig gut metagenome

text: Illumi MiSeq

text: ITS rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

characteristic: project name

text: food metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: ITS rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

characteristic: description

text: not applicable

text: not applicable

text: mock community culture ERC000025

text: Ireland

text: not collected

text: not collected

text: eukaryote

text: synthetic metagenome

characteristic: organism

text: synthetic metagenome

text: Illumi MiSeq

text: ITS rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: piggery

characteristic: environment (biome)

text: pig manure

characteristic: environment (feature)

text: fecal material ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: eukaryote

text: pig gut metagenome

text: pig gut metagenome

text: Illumi MiSeq

text: ITS rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

characteristic: project name

text: food metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: ITS rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

characteristic: description

text: not applicable

text: not applicable

text: mock community culture ERC000025

text: Ireland

text: not collected

text: not collected

text: eukaryote

text: synthetic metagenome

characteristic: organism

text: synthetic metagenome

text: Illumi MiSeq

text: ITS rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not applicable

characteristic: environment (biome)

text: not applicable

characteristic: environment (feature)

text: mock community culture ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: eukaryote

text: synthetic metagenome

text: synthetic metagenome

text: Illumi MiSeq

text: ITS rRNA


text: Waterford Institute of Technology

text: public

text: not provided

text: piggery

text: pig manure

text: fecal material ERC000025

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

characteristic: miscellaneous environmental package

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: ITS rRNA

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Waterford Institute of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

characteristic: description

text: piggery

text: animal feed

text: liquid feed ERC000025

text: Ireland

text: not collected

text: not collected

text: eukaryote

text: food metagenome

characteristic: organism

text: food metagenome

text: Illumi MiSeq

text: ITS rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Waterford Institute of Technology

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not applicable

characteristic: environment (biome)

text: not applicable

characteristic: environment (feature)

text: mock community culture ERC000025

text: Ireland

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: eukaryote

text: synthetic metagenome

text: synthetic metagenome

text: Illumi MiSeq

text: ITS rRNA


ET-NLPC-ITS

text: Waterford Institute of Technology

text: public

text: ET-NLPC-ITS

text: not provided

text: negative library preparation control

text: not applicable

text: not applicable

text: Ireland

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

characteristic: miscellaneous environmental package

text: pig gut metagenome

characteristic: project name

text: pig gut metagenome

text: Illumi MiSeq

characteristic: sequencing method

characteristic: target fragment

text: ITS rRNA

characteristic: target gene

text: ET-NLPC-ITS


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

characteristic: broker name

text: Seelandheim Worben; Worben, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-4636-5369/2021

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Veterinary College

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:Royal Veterinary College

characteristic: Submitter Id

text: chicken

characteristic: common name

text: Uninfected 1

characteristic: description

text: Gallus gallus

text: Gallus gallus