characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-43306689/2022

characteristic: organism


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital Basel

text: SIB

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43306692/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43306693/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43306701/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43306735/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43306767/2022

characteristic: organism


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Groeflin Urs Beat, Binningen, Switzerland

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43306780/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-43306804/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43306851/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43306910/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-43306937/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-UHB-43307225/2022

characteristic: organism


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Felix-Platter Spital, Basel, Switzerland

characteristic: collector name

text: Switzerland

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-75025975/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

text: not collected

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

text: human

text: not collected

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: title


text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

characteristic: collection date

text: not collected

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: not collected

text: homo sapien

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


text: New Mexico State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:New Mexico State University

text: water

characteristic: description

text: uncultured bacterium

text: uncultured bacterium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: New Mexico State University

text: public

text: Shalygin S.S.

text: Pacbio

text: Yes

text: USA

text: Shore of Caballo Lake, cyanobacterial bloom

characteristic: geographic location (region and locality)

text: uncultured bacterium

text: uncultured bacterium


text: New Mexico State University

text: public

text: Shalygin S.S.

text: Pacbio

text: Yes

text: USA

text: Vicinity of Loco Mountain, Snow Lake, bloom close to the shore

text: uncultured bacterium

text: uncultured bacterium

characteristic: title


text: New Mexico State University

characteristic: INSDC center name

text: public

text: Shalygin S.S.

text: Pacbio

text: Yes

text: USA

text: Shore of Abiquiu Lake (desert environment), floating bloom on the surface of the water

text: uncultured bacterium

text: uncultured bacterium


characteristic: Batch nr

characteristic: INSDC first public

text: public

tag: Namespace:Cetner for Evolutionary Hologenomics-GLOBE institute

text: illumina

characteristic: adapters

text: zebrafish

characteristic: common name

text: Bacterial profiling of zebrafish related microbiota

text: No

text: Danio rerio

characteristic: host scientific name

text: Danio rerio

characteristic: project name

text: Zymo SHIELD ERC000011

characteristic: sample storage buffer checklist_accession

characteristic: sample storage temperature

text: 400 ul

characteristic: sample volume or weight for DNA extraction

text: Danio rerio

text: Miseq

characteristic: sequencing method

text: blank


characteristic: ENA-CHECKLIST

text: Cetner for Evolutionary Hologenomics-GLOBE institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: illumina

text: zebrafish

characteristic: description

text: No

text: Danio rerio

text: Danio rerio

characteristic: organism

text: Zymo SHIELD ERC000011

text: 400 ul

text: Danio rerio

text: Miseq

text: blank


extraction shield blank

characteristic: Batch nr

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: extraction shield blank

text: illumina

text: zebrafish

text: No

text: Danio rerio

text: Danio rerio

text: Zymo SHIELD ERC000011

text: 400 ul

text: Danio rerio

text: Miseq

text: blank

text: extraction shield blank

characteristic: title


A(a)

characteristic: INSDC first public

text: public

text: A(a)

text: illumina

characteristic: adapters

text: zebrafish

characteristic: common name

text: Yes

text: Danio rerio

characteristic: host scientific name

text: Danio rerio

characteristic: project name

text: Zymo SHIELD ERC000011

characteristic: sample storage buffer checklist_accession

text: 400 ul

text: Danio rerio

text: Miseq

text: A(a)


B(a)

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: B(a)

text: illumina

text: zebrafish

text: Yes

text: Danio rerio

text: Danio rerio

text: Zymo SHIELD ERC000011

characteristic: sample storage temperature

text: 400 ul

characteristic: sample volume or weight for DNA extraction

text: Danio rerio

text: Miseq

characteristic: sequencing method

text: B(a)


C(a)

characteristic: Batch nr

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: C(a)

characteristic: Submitter Id

text: illumina

text: zebrafish

characteristic: description

text: Yes

text: Danio rerio

text: Danio rerio

characteristic: organism

text: Zymo SHIELD ERC000011

text: 400 ul

text: Danio rerio

text: Miseq

text: C(a)


AIVN 5 (TZ:GTA1-:2018)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AIVN 5 (TZ:GTA1-:2018)

tag: Namespace:Mikocheni Agricultural Research Institute

text: Tanzania Agricultural Research institute(TARI-Mikocheni)

text: Hilda Bachwenkizi

characteristic: collector name

characteristic: definition for seropositive sample

text: Diseased sweet potato leaf samples

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Lake zone

characteristic: geographic location (region and locality)

text: 3 months

characteristic: host age

text: dicotyledonous perennial plant that produces edible tubers

characteristic: host behaviour

text: Sweet potato

characteristic: host common name

text: Leaf curl

characteristic: host disease outcome

text: Land

characteristic: host habitat

characteristic: host health state

text: Ipomoea�batatas�(L.) Lam

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Sweet potato

characteristic: isolation source host-associated

text: Ipomoea setosa ERC000033

characteristic: isolation source non-host-associated checklist_accession

text: Sweet potato leaf curl Sao Paulo virus

characteristic: receipt date

text: Diseased

characteristic: sample capture status

text: Sweet potato leaf curl Sao Paulo virus

characteristic: serotype (required for a seropositive sample)

text: Sweet potato leaf samples

characteristic: title

text: Hilda Bachwenkizi

characteristic: virus identifier


name: TZ:SHZPT:2019 (AIVN 12)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mikocheni Agricultural Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: TZ:SHZPT:2019 (AIVN 12)

characteristic: Submitter Id

characteristic: Tanzania Agricultural Research institute(TARI-Mikocheni)

text: Hilda Bachwenkizi

characteristic: collector name

characteristic: definition for seropositive sample

text: Diseased sweet potato leaf samples

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Highland zone

characteristic: geographic location (region and locality)

text: 3 months

text: Sweet potato

text: Leaf curl

text: Land

text: Ipomoea�batatas�(L.) Lam

characteristic: host scientific name

text: Sweet potato

text: Ipomoea setosa ERC000033

text: Sweet potato leaf curl Sao Paulo virus

characteristic: organism

text: Diseased

text: Sweet potato leaf curl Sao Paulo virus

text: Sweet potato leaf samples

text: Hilda Bachwenkizi


name: TZ:MVRPU:2019(AIVN 10)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: TZ:MVRPU:2019(AIVN 10)

text: Hilda Bachwenkizi

text: Diseased sweet potato leaf samples

text: Tanzania

text: Eastern zone

text: 3 months

characteristic: host age

characteristic: host behaviour

text: Sweet potato

characteristic: host common name

text: Leaf curl

characteristic: host disease outcome

text: Land

characteristic: host habitat

characteristic: host health state

text: Ipomoea�batatas�(L.) Lam

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Sweet potato

characteristic: isolation source host-associated

text: Ipomoea setosa ERC000033

characteristic: isolation source non-host-associated checklist_accession

text: Sweet potato leaf curl Uganda virus-[Uganda:Kampala:2008]

characteristic: receipt date

text: Diseased

characteristic: sample capture status

characteristic: serotype (required for a seropositive sample)

text: Sweet potato leaf samples

characteristic: title

text: Hilda Bachwenkizi

characteristic: virus identifier


AIVN 13(TZ:MVRU7-5:2019 )

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AIVN 13(TZ:MVRU7-5:2019 )

characteristic: Submitter Id

characteristic: Tanzania Agricultural Research institute(TARI-Mikocheni)

text: Hilda Bachwenkizi

characteristic: collector name

characteristic: definition for seropositive sample

text: Diseased sweet potato leaf samples

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Eastern zone

characteristic: geographic location (region and locality)

text: 3 months

text: Sweet potato

text: Leaf curl

text: Land

text: Ipomoea�batatas�(L.) Lam

characteristic: host scientific name

text: Sweet potato

text: Ipomoea setosa ERC000033

characteristic: organism

text: Diseased

text: Sweet potato leaf samples

text: Hilda Bachwenkizi


AIVN 8(TZ:CHALS2-4:2018)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: AIVN 8(TZ:CHALS2-4:2018)

text: Hilda Bachwenkizi

text: Diseased sweet potato leaf samples

text: Tanzania

text: Eastern zone

text: 3 months

characteristic: host age

characteristic: host behaviour

text: Sweet potato

characteristic: host common name

text: Leaf curl

characteristic: host disease outcome

text: Land

characteristic: host habitat

characteristic: host health state

text: Ipomoea�batatas�(L.) Lam

characteristic: host sex

characteristic: isolate

text: Sweet potato

characteristic: isolation source host-associated

text: Ipomoea setosa ERC000033

characteristic: isolation source non-host-associated checklist_accession

text: Sweet potato leaf curl virus

characteristic: receipt date

text: Diseased

characteristic: sample capture status

text: Sweet potato leaf curl virus

characteristic: serotype (required for a seropositive sample)

text: Sweet potato leaf samples

characteristic: title

text: Hilda Bachwenkizi

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: human

text: not collected

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host subject id

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: External Id

text: University clinic Duesseldorf

text: public

text: not collected

text: Germany

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

text: not collected

characteristic: host sex

characteristic: isolate

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: institute of tropical medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:institute of tropical medicine

text: Democratic Republic of the Congo

text: human

text: Trypanosoma brucei

text: Trypanosoma brucei

text: T.b. gambiense

characteristic: sub species


text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

characteristic: Submitter Id

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: host subject id

characteristic: host subject id

characteristic: isolation source non-host-associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

text: host subject id

characteristic: isolate

characteristic: organism

characteristic: title


text: University of Tartu, Estonia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: male

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female

text: host subject id

characteristic: host subject id

characteristic: isolation source non-host-associated

characteristic: sample capture status


text: University of Tartu, Estonia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: human

text: healthy

text: Homo sapiens

text: male

characteristic: host sex

text: host subject id

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:918-91952

tag: Namespace:NATIONAL VETERINARY INSTITUTE (SVA)

text: Sweden

text: healthy

text: sus crofta

characteristic: host scientific name

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91953

characteristic: Submitter Id

text: Sweden

text: healthy

characteristic: host health state

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91954

text: Sweden

characteristic: geographic location (country and/or sea)

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91955

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91956

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91957

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91958

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:919-91959

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:920-91960

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:45:16:920-91961

text: Sweden

text: healthy

text: sus crofta

text: piglet

text: Clostridioides difficile

text: Clostridioides difficile


text: Marine Biological Association

text: public

characteristic: Plate coord

text: A

characteristic: Site letter

tag: Namespace:Marine Biological Association

unit: #units

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Laminaria hyperborea

text: Bacterial communities associated with kelp hosts

characteristic: project name

text: W Scotland

characteristic: region

characteristic: sample number

text: Laminaria hyperborea

text: Illumina

characteristic: sequencing method

text: West Kerrera

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: A

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Saccharina latissima

characteristic: organism

text: W Scotland

text: Saccharina latissima

text: Illumina

text: West Kerrera

characteristic: title


text: Marine Biological Association

text: public

characteristic: Plate coord

text: B

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Laminaria hyperborea

characteristic: project name

text: W Scotland

characteristic: region

text: Laminaria hyperborea

text: Illumina

text: Pladda Island


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

text: metagenome

text: Saccharina latissima

text: W Scotland

characteristic: sample number

text: Saccharina latissima

text: Illumina

characteristic: sequencing method

text: Pladda Island

characteristic: site name


text: Marine Biological Association

text: public

characteristic: Plate coord

text: A

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Laminaria hyperborea

characteristic: organism

text: N Scotland

text: Laminaria hyperborea

text: Illumina

text: North Graensat

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: N Scotland

characteristic: Region

characteristic: SRA accession

characteristic: Sample number

text: A

text: North Graensat

characteristic: Site name

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

text: metagenome

characteristic: investigation type

text: Laminaria hyperborea

characteristic: project name

text: Laminaria hyperborea

text: Illumina


text: Marine Biological Association

text: public

characteristic: Plate coord

text: A

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Saccharina latissima

characteristic: organism

text: N Scotland

characteristic: region

characteristic: sample number

text: Saccharina latissima

text: Illumina

characteristic: sequencing method

text: North Graensat

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

text: metagenome

characteristic: investigation type

text: Laminaria hyperborea

characteristic: project name

text: N Scotland

text: Laminaria hyperborea

text: Illumina

text: South Graemsay

characteristic: title


text: Marine Biological Association

text: public

characteristic: Plate coord

text: B

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Saccharina latissima

characteristic: organism

text: N Scotland

characteristic: region

text: Saccharina latissima

text: Illumina

text: South Graemsay


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: A

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

text: metagenome

text: Laminaria hyperborea

text: S England

characteristic: sample number

text: Laminaria hyperborea

text: Illumina

characteristic: sequencing method

text: Mewstone

characteristic: site name


text: Marine Biological Association

text: public

characteristic: Plate coord

text: A

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: Saccharina latissima

characteristic: project name

text: S England

text: Saccharina latissima

text: Illumina

text: Mewstone

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Laminaria hyperborea

characteristic: organism

text: S England

characteristic: region

text: Laminaria hyperborea

text: Illumina

text: Stoke


text: Marine Biological Association

text: public

characteristic: Plate coord

text: B

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Saccharina latissima

text: S England

characteristic: sample number

text: Saccharina latissima

text: Illumina

characteristic: sequencing method

text: Stoke

characteristic: site name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: A

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

text: metagenome

characteristic: investigation type

text: Laminaria hyperborea

characteristic: project name

text: Wales

text: Laminaria hyperborea

text: Illumina

text: Stack Rock

characteristic: title


text: Marine Biological Association

text: public

characteristic: Plate coord

text: A

characteristic: Site letter

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Saccharina latissima

characteristic: organism

text: Wales

characteristic: region

text: Saccharina latissima

text: Illumina

text: Stack Rock


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

text: metagenome

text: Laminaria hyperborea

text: Wales

characteristic: sample number

text: Laminaria hyperborea

text: Illumina

characteristic: sequencing method

text: St Brides

characteristic: site name


text: Marine Biological Association

text: public

characteristic: Plate coord

text: Wales

characteristic: Region

characteristic: Sample number

text: B

characteristic: Site letter

text: St Brides

characteristic: Site name

characteristic: collection date

text: Host associated epiphytoic bacteria

characteristic: description

text: kelp forest

characteristic: environment (biome)

text: reef

characteristic: environment (feature)

text: surface biofilm

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: Laminaria hyperborea

characteristic: project name

text: Laminaria hyperborea

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B

characteristic: Submitter Id

text: Host associated epiphytoic bacteria

text: kelp forest

text: reef

text: surface biofilm

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Saccharina latissima

characteristic: organism

text: Wales

characteristic: region

characteristic: sample number

text: Saccharina latissima

text: Illumina

characteristic: sequencing method

text: St Brides

characteristic: site name


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:54:38:011-93426

text: reference strain

text: UK

text: Clostridioides difficile

text: Clostridioides difficile

text: CCUG 20309

characteristic: title


characteristic: ENA-CHECKLIST

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: ena-SAMPLE-TAB-06-02-2022-12:54:38:012-93427

text: reference strain

text: ATCC 9689

text: Clostridioides difficile

text: Clostridioides difficile

text: CCUG 4938


characteristic: ENA-FIRST-PUBLIC

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

text: human

text: diseased

text: Homo sapiens

text: female

text: host subject id

characteristic: organism

text: active surveillance in response to outbreak

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance

characteristic: title


text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

text: not provided

text: Homo sapiens

text: male

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

characteristic: host common name

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id


text: University clinic Duesseldorf

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Swiss Tropical and Public Health Institute

text: Mtb

characteristic: description

text: Georgia

text: sputum

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Mtb

characteristic: title


text: Swiss Tropical and Public Health Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mtb

text: Georgia

text: sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mtb


text: University clinic Duesseldorf

text: public

characteristic: Submitter Id

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Szeged

text: public

tag: Namespace:University of Szeged

text: human

characteristic: common name

text: Gepid mitogenom

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Regional Authority of Public Health Banska Bystrica

text: Science Park of Comenius University of Bratislava

characteristic: broker name

text: Regional Authority of Public Health Banska Bystrica, Cesta k nemocnici 1, Banska Bystrica 975 56, Slovakia

text: not provided

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: female

characteristic: host subject id

text: RNA

characteristic: isolate

text: nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism

characteristic: sample capture status


text: Regional Authority of Public Health Banska Bystrica

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: RNA

text: nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: broker name

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: RNA

text: nasopharyngeal swab


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Regional Public Health Authority with the seat in Trenčín

characteristic: Submitter Id

text: Regional Public Health Authority with the seat in Trenčín, Nemocničná 4, 911 01, Trenčín, Slovakia

text: not provided

text: Slovakia

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: female

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Public Health Authority with the seat in Trenčín

text: public

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA SP IS 03

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: Kristinn Haukur Skarphedinsson

characteristic: collected by

text: The Icelandic Institute of Natural History

text: white-tailed eagle

text: Iceland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Reykjavik

characteristic: geographic location (region and locality)

text: coastal

characteristic: habitat

text: Kristinn H Skarphedinsson

characteristic: identified by

text: adult

characteristic: lifestage

text: Haliaeetus albicilla

characteristic: organism

text: BLOOD

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Haliaeetus albicilla

text: FEMALE

characteristic: sex

text: ERGA SP IS 03

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


E-MTAB-11230:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11230:Sample 1

tag: Namespace:MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: We performed RNA sequencing of SCLC PDXs. Patient samples 46 samples from the 33 patients reported in this study were collected with informed consent from patients under protocols approved by the MSKCC (MSK IMPACT Protocol 12-245; PDX Protocol 14-091; Biospecimen Protocol 06-107). Metadata for each patient can be found in Supplementary Table 1. Patient-derived xenografts All animal experiments were approved by the Memorial Sloan Kettering Cancer Center (MSKCC) Animal Care and Use Committee and mice were housed in accredited facilities under pathogen-free conditions. PDX and CDX models were generated from primary tumors and whole blood samples as described previously (Daniel, V. C. et al. Cancer Res 69, 3364-3373, doi:10.1158/0008-5472.CAN-08-4210 (2009). RNA extraction and sequencing was done in collaboration with Genewiz. Total RNA was extracted from fresh frozen cell pellet samples using Qiagen RNeasy Plus Universal mini kit following manufacturer’s instructions (Qiagen, Hilden, Germany). Extracted RNA samples were quantified using Qubit 2.0 Fluorometer (Life Technologies, Carlsbad, CA, USA) and RNA integrity was checked using Agilent TapeStation 4200 (Agilent Technologies, Palo Alto, CA, USA). RNA sequencing libraries were prepared using the NEBNext Ultra RNA Library Prep Kit for Illumina following manufacturer’s instructions (NEB, Ipswich, MA, USA). Briefly, mRNAs were first enriched with Oligo(dT) beads. Enriched mRNAs were fragmented for 15 minutes at 94C. First strand and second strand cDNAs were subsequently synthesized. cDNA fragments were end repaired and adenylated at 3’ends, and universal adapters were ligated to cDNA fragments, followed by index addition and library enrichment by limited-cycle PCR. The sequencing libraries were validated on the Agilent TapeStation (Agilent Technologies, Palo Alto, CA, USA), and quantified by using Qubit 2.0 Fluorometer (Invitrogen, Carlsbad, CA) as well as by quantitative PCR (KAPA Biosystems, Wilmington, MA, USA). Sample preparation for RNA sequencing and subsequent analysis was performed as in 26. Briefly, Illumina HiSeq instrument (4000 or equivalent; a 2x150bp Paired End (PE)) according to manufacturer’s instructions was used for RNA sequencing in collaboration with Genewiz.

characteristic: description

text: small cell lung carcinoma

characteristic: disease

text: patient derived xenograft grown in NGS mouse

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 1


E-MTAB-11230:Sample 2

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 2

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 2

characteristic: title


E-MTAB-11230:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 3

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-11230:Sample 4

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 4

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-11230:Sample 5

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 5


E-MTAB-11230:Sample 6

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 6

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-11230:Sample 7

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 7

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 7

characteristic: title


E-MTAB-11230:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 8

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-11230:Sample 9

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 9

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-11230:Sample 10

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-11230:Sample 11

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 11

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-11230:Sample 12

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 12

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 12

characteristic: title


E-MTAB-11230:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 13

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 13


E-MTAB-11230:Sample 14

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 14

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 14


E-MTAB-11230:Sample 15

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 15

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 15


E-MTAB-11230:Sample 16

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 16

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 16


E-MTAB-11230:Sample 17

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 17

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 17

characteristic: title


E-MTAB-11230:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 18

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 18


E-MTAB-11230:Sample 19

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 19

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 19


E-MTAB-11230:Sample 20

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 20

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 20


E-MTAB-11230:Sample 21

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 21

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 21


E-MTAB-11230:Sample 22

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 22

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 22

characteristic: title


E-MTAB-11230:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 23

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 23


E-MTAB-11230:Sample 24

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 24

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 24


E-MTAB-11230:Sample 25

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 25

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 25


E-MTAB-11230:Sample 26

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 26

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 26


E-MTAB-11230:Sample 27

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 27

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 27

characteristic: title


E-MTAB-11230:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 28

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 28


E-MTAB-11230:Sample 29

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 29

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 29


E-MTAB-11230:Sample 30

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 30

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 30


E-MTAB-11230:Sample 31

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 31

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 31


E-MTAB-11230:Sample 32

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 32

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 32

characteristic: title


E-MTAB-11230:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 33

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 33


E-MTAB-11230:Sample 34

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 34

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 34


E-MTAB-11230:Sample 35

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 35

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 35


E-MTAB-11230:Sample 36

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 36

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 36


E-MTAB-11230:Sample 37

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 37

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 37

characteristic: title


E-MTAB-11230:Sample 38

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 38

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 38


E-MTAB-11230:Sample 39

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11230:Sample 39

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 39


E-MTAB-11230:Sample 40

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

characteristic: SRA accession

text: E-MTAB-11230:Sample 40

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 40


E-MTAB-11230:Sample 41

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 41

text: ArrayExpress

text: human

characteristic: description

text: small cell lung carcinoma

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 41


E-MTAB-11230:Sample 42

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 42

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 42

characteristic: title


E-MTAB-11230:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

text: E-MTAB-11230:Sample 43

text: ArrayExpress

text: human

text: small cell lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

text: Sample 43


text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIPH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

characteristic: common name

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

text: Homo Sapiens

text: Blood

characteristic: isolation source

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220131_os_44/2022

characteristic: sample capture status


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute for Infectious Diseases, Bern, Switzerland

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-220131_os_45/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220131_os_46/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220131_os_47/2022

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: broker name

text: Switzerland

text: BE

text: Human

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