status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF NEW SOUTH WALES

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Fecal

characteristic: title


text: UNIVERSITY OF NEW SOUTH WALES

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Negative control


text: public

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: yes

text: yes

text: yes

text: UVC

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

characteristic: description

text: female

characteristic: gender

text: human feces metagenome

text: human feces metagenome

characteristic: sequencing method

characteristic: subject id


characteristic: ENA-CHECKLIST

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: yes

text: yes

text: yes

text: UVC

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: yes

text: yes

text: UVC

text: yes

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: External Id

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC center name

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: vaginal

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC first public

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC last update

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: INSDC status

text: yes

text: yes

text: UVC

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: SRA accession

text: yes

text: yes

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: Submitter Id

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

characteristic: common name

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: yes

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

characteristic: organism

text: human feces metagenome


text: public

text: yes

text: yes

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome

characteristic: title


text: public

text: yes

text: UVC

text: no

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

characteristic: description

text: male

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: human feces metagenome

text: feces

text: male

characteristic: gender

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: yes

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome

characteristic: sequencing method


text: public

text: yes

text: yes

text: UVC

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome

characteristic: subject id


characteristic: ENA-CHECKLIST

text: public

text: yes

text: yes

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


characteristic: External Id

text: public

text: yes

text: yes

text: yes

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC center name

text: public

text: yes

text: yes

text: yes

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC first public

text: public

text: yes

text: yes

text: yes

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC last update

text: public

text: yes

text: yes

text: yes

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: INSDC status

text: yes

text: yes

text: UVC

text: no

text: no

text: no

text: yes

text: vaginal

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: SRA accession

text: yes

text: yes

text: UVC

text: no

text: no

text: no

text: yes

text: vaginal

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: Submitter Id

text: yes

text: yes

text: UVC

text: yes

text: UVC

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

characteristic: common name

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

characteristic: organism

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: vaginal

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome

characteristic: title


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: vaginal

text: human feces metagenome

text: feces

characteristic: description

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: male

characteristic: gender

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: vaginal

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome

characteristic: sequencing method


text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: vaginal

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome

characteristic: subject id


characteristic: ENA-CHECKLIST

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


characteristic: External Id

text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC center name

text: public

text: yes

text: yes

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC first public

text: public

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome


characteristic: INSDC last update

text: public

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: INSDC status

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: SRA accession

text: yes

text: yes

text: UVC

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


text: public

characteristic: Submitter Id

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

characteristic: common name

text: feces

text: male

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: male

text: vaginal

text: human feces metagenome

characteristic: organism

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: human feces metagenome

text: human feces metagenome

characteristic: title


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

characteristic: description

text: male

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: yes

text: yes

text: no

text: human feces metagenome

text: feces

text: female

characteristic: gender

text: vaginal

text: human feces metagenome

text: human feces metagenome


text: public

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: human feces metagenome

text: feces

text: female

text: vaginal

text: human feces metagenome

text: human feces metagenome

characteristic: sequencing method


text: public

text: human feces metagenome

text: feces

text: human feces metagenome

text: human feces metagenome


text: UNIVERSITY OF BOLOGNA

text: public

tag: Namespace:UNIVERSITY OF BOLOGNA

characteristic: collection date

text: Mediterranean Sea biome

characteristic: environment (biome)

text: cnidarian associated environment

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mucus

characteristic: host body site

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pH 8.07

characteristic: miscellaneous parameter

text: coral metagenome

characteristic: project name

text: coral metagenome

text: Illumina

text: Balanophyllia europaea associated microbiome, shotgun sequencing, CO2 emission vent, Panarea


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Mediterranean Sea biome

text: cnidarian associated environment

text: organic material

text: Mediterranean Sea

text: skeleton

text: host-associated

text: metagenome

text: pH 8.07

text: coral metagenome

characteristic: organism

text: coral metagenome

text: Illumina

characteristic: title


text: UNIVERSITY OF BOLOGNA

text: public

characteristic: collection date

text: Mediterranean Sea biome

characteristic: environment (biome)

text: cnidarian associated environment

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: tissue

characteristic: host body site

text: host-associated

text: metagenome

text: pH 8.07

text: coral metagenome

text: coral metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Mediterranean Sea biome

text: cnidarian associated environment

text: organic material

text: Mediterranean Sea

text: mucus

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pH 7.87

characteristic: miscellaneous parameter

text: coral metagenome

characteristic: project name

text: coral metagenome

text: Illumina


text: UNIVERSITY OF BOLOGNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mediterranean Sea biome

characteristic: environment (biome)

text: cnidarian associated environment

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Mediterranean Sea

text: skeleton

text: host-associated

text: metagenome

text: pH 7.87

text: coral metagenome

characteristic: organism

text: coral metagenome

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BOLOGNA

text: public

text: Mediterranean Sea biome

text: cnidarian associated environment

text: organic material

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: tissue

characteristic: host body site

text: host-associated

text: metagenome

text: pH 7.87

text: coral metagenome

text: coral metagenome

text: Illumina

characteristic: sequencing method


text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Mediterranean Sea biome

text: cnidarian associated environment

text: organic material

text: Mediterranean Sea

text: mucus

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pH 7.74

characteristic: miscellaneous parameter

text: coral metagenome

characteristic: project name

text: coral metagenome

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BOLOGNA

text: public

characteristic: collection date

text: Mediterranean Sea biome

characteristic: environment (biome)

text: cnidarian associated environment

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Mediterranean Sea

text: skeleton

text: host-associated

text: metagenome

text: pH 7.74

text: coral metagenome

characteristic: organism

text: coral metagenome

text: Illumina

characteristic: title


text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Mediterranean Sea biome

text: cnidarian associated environment

text: organic material

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: tissue

characteristic: host body site

text: host-associated

text: metagenome

text: pH 7.74

text: coral metagenome

text: coral metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH INSTITUT

text: public

characteristic: SRA accession

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: Submitter Id

text: isolate obtained from a human listeriosis case in Germany

characteristic: description

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IVb

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH INSTITUT

text: public

characteristic: SRA accession

text: Germany

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIc

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

text: public

characteristic: Submitter Id

characteristic: description

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIb

text: clinical isolate of L. monocytogenes

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Germany

text: diseased

text: Homo sapiens

text: 18-00517, LD21/17

text: human listeriosis

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


text: UPPSALA UNIVERISTY

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UPPSALA UNIVERISTY

characteristic: collection date

text: 10 samples were collected from 8 wastewater treatment plants and pooled. The 18S was amplified with Endolimax-specific primers, which also ended up amplifying other eukaryotic organisms present.

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Municipal

characteristic: sewage type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDIBELL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Spain

text: diseased

characteristic: host health state

text: human

text: blood

text: Campylobacter coli

text: Campylobacter coli

characteristic: title


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:INSTITUT PASTEUR

text: Vibrio cholerae

text: Vibrio cholerae

text: Seventh pandemic Vibrio cholerae O1 El Tor, Algeria, 2018


text: public

characteristic: INSDC status

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 1


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 2


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 3


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 4


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 5


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 6


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 7


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 1


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 2


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 3


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 4


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 5


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 6


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 7


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 8


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 9


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 10


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 11


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 12


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 13


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 14


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 15


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 8


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 9


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 10


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 11


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 12


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 13


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 14


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 16


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 17


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 18


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 19


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 20


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 21


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male whole body sample 22


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 15


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 16


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 17


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 18


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 19


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 20


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male whole body sample 21


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 1


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 2


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 3


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 4


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 5


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 6


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 7


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 8


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 1


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 2


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 3


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 4


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 5


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 6


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 7


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 8


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 9


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 10


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 11


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 12


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 9


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 10


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 11


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 12


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 13


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 14


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 13


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 14


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 15


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 16


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 17


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 18


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 28 male whole body sample 19


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 15


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 16


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 17


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 18


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 9 male whole body sample 19


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male microbiome whole body sample 1


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male microbiome whole body sample 2


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim ancestral 27 male microbiome whole body sample 3


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male microbiome whole body sample 1


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male microbiome whole body sample 2


text: public

text: Drosophila simulans

text: Drosophila simulans

text: Florida D.sim hot evolved 4 male microbiome whole body sample 3


text: INSTITUT PASTEUR

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: Seventh pandemic Vibrio cholerae O1 El Tor, Algeria, 2018


text: IPK-Gatersleben

text: public

text: bread wheat

characteristic: common name

text: Plant sample from wheat elite line Monty

characteristic: description

text: Monty

characteristic: genotype

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: Monty


text: INSERM Gustave Roussy institute

text: public

tag: Namespace:INSERM Gustave Roussy institute

text: ArrayExpress

characteristic: broker name

text: T cell

characteristic: cell type

text: human

text: Protocols: To recapitulate the t(2;5)(p23;q35) chromosomal translocation, activated T lymphocytes from healthy donors PBMC were transfected with the RNP complex composed of the protein Cas9 with gRNA NPM1 (targeting NPM1 gene) and gRNA ALK (targeting ALK gene). Control cells were wild-type CD4+ activated lymphocytes. Cells were grown for 10-15 days in vitro prior RNA extraction or engraftment in vivo. Mice engrafted with NPM1-ALK+ T-cells developed T-cell lymphoma after 2-5 months. Human lymphoma cells were purified based on human CD45+CD3- or CD45+CD3+ expression by flow cytometry prior to RNA extraction RNA was extracted using RNeasy mini Kit (Qiagen) SureSelect Strand-Specific RNA Library Prep System Poly-A Selection and Strand-Specific mRNA Library Preparation for the Illumina Platform

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: in vitro cultured

characteristic: growth condition

text: CD4 positive

characteristic: immunophenotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: wild type

characteristic: phenotype

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM Gustave Roussy institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: human

text: adult

text: normal

text: wild type genotype

text: in vitro cultured

text: CD4 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: wild type

text: Homo sapiens

text: male

characteristic: title


text: INSERM Gustave Roussy institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: CRISPR Cas9 induced fusion of NPM1 and ALK

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: in vitro cultured

text: CD4 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: anaplastic large cell lymphoma

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSERM Gustave Roussy institute

text: public

text: E-MTAB-10924:8_67_3_transloque_CD3_pos_neg_S8

text: ArrayExpress

text: T cell

text: human

text: adult

text: normal

characteristic: disease

text: wild type genotype

text: in vitro cultured

characteristic: growth condition

text: CD4 positive

characteristic: immunophenotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: anaplastic large cell lymphoma

characteristic: phenotype

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM Gustave Roussy institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10924:10_67_3_transloque_CD3neg_S10

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: human

text: adult

text: normal

text: wild type genotype

text: in vitro cultured

text: CD4 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: anaplastic large cell lymphoma

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSERM Gustave Roussy institute

text: public

text: ArrayExpress

characteristic: broker name

text: T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: cells grafted on NOD.Cg-Prkdc(scid) Il2rg(tm1Wjl)/SzJ mice

text: CD4 positive; CD45 positive; CD3 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: anaplastic large cell lymphoma

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM Gustave Roussy institute

text: public

text: ArrayExpress

text: T cell

text: human

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: growth condition

text: CD4 positive; CD45 positive; CD3 negative

characteristic: immunophenotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: anaplastic large cell lymphoma

characteristic: phenotype

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Genomic Regulation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre for Genomic Regulation

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: The clonal strains C5, C20 and C26 used in this study are derived from M129 wild type strain (ATCC 29342) and were cultivated in SP-4 medium with antibiotics and inducers when appropriate, at 37ºC and 5% CO2. The strain C5 has a single minitransposon with the KS1 kill-switch inserted into the gene mpn462 gene. The strain C20, derived from strain C5, has a second minitransposon with the KS13g kill-switch inserted in the intergenic region between genes mpn648 and mpn649. And, the strain C26, also derived from strain C5, has a second minitransposon with the TKS2 kill-switch inserted into the mpn062 gene. All strains C5, C20 and C26 were serially passaged every 48h for 15th passages in SP-4 medium supplemented with puromycin (3.3 µg/mL), puromycin and chloramphenicol (20 µg/mL), or puromycin, chloramphenicol and theophylline (0.5 mM), respectively. Genomic DNA was isolated from samples of strain the strains C5 and C20 grown in the permissive condition (in the absence of IPTG) at the 2nd, 3rd and 15th passage. Genomic DNA was also isolated from samples of the strain C26 at passages 2nd and 15th grown in permissive conditions with 0.5 mM theophylline. In the case of the strain C5, genomic DNA was also isolated from a sample of the strain at the 3rd passage grown in the presence of 1 mM IPTG that triggers the kill-switch present in the strain. PX in the name of the samples correspond to the number of passages applied IPTG kill-switch induction in samples C5_P3IPTG Genomic DNA samples were prepared from late-exponential phase cultures of M. pneumoniae strains C5, C20 and C26 grown in SP-4 medium (and relevant antibiotics and inducers). Cells grown in 75 cm2 flasks were washed three times with PBS and followed by genomic extraction using the GenElute™ Bacterial Genomic DNA Kit (Cat. No. NA2110, Sigma). The London Biofoundry (Imperial College London) performed sequencing: 500 ng of the Extracted DNA genomes were prepared for sequencing with the Illumina Nextera DNA Flex kit (20018704) according to manufacturer recommendations via an automated implementation on an Opentrons OT-2 liquid handler.

text: KS1 & KS13g kill-switches

text: Mycoplasma pneumoniae M129

text: Mycoplasma pneumoniae M129

text: whole organism

characteristic: passage

characteristic: replicate

text: Mycoplasma pneumoniae M129

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Regulation

text: public

text: ArrayExpress

characteristic: broker name

characteristic: description

text: TKS2 kill-switch

characteristic: genotype

text: Mycoplasma pneumoniae M129

text: Mycoplasma pneumoniae M129

text: whole organism

text: Mycoplasma pneumoniae M129


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: KS1 kill-switch

text: Mycoplasma pneumoniae M129

characteristic: organism

text: Mycoplasma pneumoniae M129

text: whole organism

characteristic: organism part

text: Mycoplasma pneumoniae M129


E-MTAB-11025:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11025:Sample 1

tag: Namespace:PhD student, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich

text: ArrayExpress

characteristic: cell line

text: house mouse

characteristic: common name

text: Protocols: B16F10-luc2 melanoma cells were cultured in DMEM with pyruvate and 10% FBS. Extracellular vesicles were isolated from cell culture supernatant by size exclusion chromatography using iZON qEV columns according to the manufacturer's recommendation. For a complete protocol, please refer to Leary N, Walser S, Dieterich L.C., Methods Mol Biol (in press). Whole RNA from cells and EVs was extracted using the Macherey Nagel Nucleospin kit according to the manufacturer's instructions. Libraries were prepared using a miniaturised version of the Smart-seq2 protocol (Picelli et al., 2014).

text: melanoma

characteristic: disease

text: cells

characteristic: fraction

text: Mus musculus

text: Mus musculus

text: skin

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-11025:Sample 2

text: PhD student, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11025:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: melanoma

text: cells

text: Mus musculus

text: Mus musculus

text: skin

text: Mus musculus

text: female

text: Sample 2


E-MTAB-11025:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11025:Sample 3

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: melanoma

text: cells

text: Mus musculus

text: Mus musculus

text: skin

text: Mus musculus

text: female

text: Sample 3

characteristic: title


E-MTAB-11025:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11025:Sample 4

text: ArrayExpress

characteristic: cell line

text: house mouse

text: melanoma

text: extracellular vesicles

text: Mus musculus

characteristic: organism

text: Mus musculus

text: skin

characteristic: organism part

text: Mus musculus

text: female

text: Sample 4


E-MTAB-11025:Sample 5

text: public

text: E-MTAB-11025:Sample 5

text: ArrayExpress

text: house mouse

characteristic: common name

text: melanoma

characteristic: disease

text: extracellular vesicles

characteristic: fraction

text: Mus musculus

text: Mus musculus

text: skin

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 5


E-MTAB-11025:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11025:Sample 6

text: ArrayExpress

text: house mouse

text: melanoma

text: extracellular vesicles

text: Mus musculus

text: Mus musculus

text: skin

text: Mus musculus

text: female

text: Sample 6


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

characteristic: Submitter Id

text: clinical isolate

characteristic: description

text: Legionella pneumophila

text: Legionella pneumophila


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

tag: Namespace:Cornell University

text: Dfb, Humid Continental warm summer

characteristic: climate zone

characteristic: collection date

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: O horizon

characteristic: horizon

text: mimarks-survey

characteristic: investigation type

text: Bradyrhizobium sp. OTU1

text: Forest Soil Bradyrhizobium

characteristic: project name

text: British Columbia

characteristic: region

unit: g

characteristic: sample weight for DNA extraction

text: Bradyrhizobium sp. OTU1

text: Illumina

characteristic: sequencing method

text: Brunisolic Gray Luvisol

characteristic: soil classification

text: soil

characteristic: soil environmental package

characteristic: title

text: Douglas fir, Subalpine fir, Lodgepole pine

characteristic: tree cover


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Dfb, Humid Continental warm summer

characteristic: climate zone

characteristic: collection date

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

text: Canada

text: A horizon

text: mimarks-survey

text: Bradyrhizobium sp. OTU1

characteristic: organism

text: Forest Soil Bradyrhizobium

text: British Columbia

text: Bradyrhizobium sp. OTU1

text: Illumina

text: Brunisolic Gray Luvisol

text: soil


text: Cornell University

text: public

text: Dfc, Boreal cool summer

text: forest

text: forest

text: soil

text: soil

characteristic: environmental package

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: O horizon

characteristic: horizon

text: mimarks-survey

characteristic: investigation type

text: Bradyrhizobium sp. OTU1

text: Forest Soil Bradyrhizobium

characteristic: project name

text: British Columbia

characteristic: region

characteristic: sample weight for DNA extraction

text: Bradyrhizobium sp. OTU1

text: Illumina

characteristic: sequencing method

text: Orthic Humo-Ferric Podzol, Gleyed Eluviated Dystric Brunisol

characteristic: soil classification

text: soil

characteristic: soil environmental package

characteristic: title

text: Subalpine fir, Douglas fir, Interior Spruce

characteristic: tree cover


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Dfb, Humid Continental warm summer

characteristic: climate zone

characteristic: collection date

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

text: Canada

text: O horizon

text: mimarks-survey

text: Bradyrhizobium sp. OTU1

characteristic: organism

text: Forest Soil Bradyrhizobium

text: Ontario

text: Bradyrhizobium sp. OTU1

text: Illumina

text: Orthic Dystric Brunisol

text: soil

text: Black Spruce


text: Cornell University

text: public

text: Cfa, Humid subtropical

text: forest

text: forest

text: soil

text: soil

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: O horizon

characteristic: horizon

text: mimarks-survey

characteristic: investigation type

text: Bradyrhizobium sp. OTU1

text: Forest Soil Bradyrhizobium

characteristic: project name

text: Texas

characteristic: region

characteristic: sample weight for DNA extraction

text: Bradyrhizobium sp. OTU1

text: Illumina

characteristic: sequencing method

text: Aquic Glossudalfs

characteristic: soil classification

text: soil

characteristic: soil environmental package

characteristic: title

text: Loblolly Pine, Beautyberry, Yaupon, Sweetgum, Oaks, Wax Myrtle

characteristic: tree cover


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cfa, Humid subtropical

characteristic: climate zone

characteristic: collection date

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

text: USA

text: A horizon

text: mimarks-survey

text: Bradyrhizobium sp. OTU1

characteristic: organism

text: Forest Soil Bradyrhizobium

text: Texas

text: Bradyrhizobium sp. OTU1

text: Illumina

text: Aquic Glossudalfs

text: soil


text: Cornell University

text: public

text: Dfb, Humid Continental warm summer

text: forest

text: forest

text: soil

text: soil

characteristic: environmental package

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: A horizon

characteristic: horizon

text: mimarks-survey

characteristic: investigation type

text: Bradyrhizobium sp. OTU1

text: Forest Soil Bradyrhizobium

characteristic: project name

text: Ontario

characteristic: region

characteristic: sample weight for DNA extraction

text: Bradyrhizobium sp. OTU1

text: Illumina

characteristic: sequencing method

text: Orthic Dystric Brunisol

characteristic: soil classification

text: soil

characteristic: soil environmental package

characteristic: title

text: Black Spruce

characteristic: tree cover


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Csa, Mediterranean hot summer

characteristic: climate zone

characteristic: collection date

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

text: USA

text: O horizon

text: mimarks-survey

text: Bradyrhizobium sp. OTU1

characteristic: organism

text: Forest Soil Bradyrhizobium

text: California

text: Bradyrhizobium sp. OTU1

text: Illumina

text: Mesic Ultic Haploxeralfs

text: soil

text: Ponderosa pine, sugar pine, white fir, giant sequoia


text: Cornell University

text: public

text: Csa, Mediterranean hot summer

text: forest

text: forest

text: soil

text: soil

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: A horizon

characteristic: horizon

text: mimarks-survey

characteristic: investigation type

text: Bradyrhizobium sp. OTU1

text: Forest Soil Bradyrhizobium

characteristic: project name

text: California

characteristic: region

characteristic: sample weight for DNA extraction

text: Bradyrhizobium sp. OTU1

text: Illumina

characteristic: sequencing method

text: Mesic Ultic Haploxeralfs

characteristic: soil classification

text: soil

characteristic: soil environmental package

characteristic: title

characteristic: tree cover


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Dfb, Humid Continental cool summer

characteristic: climate zone

characteristic: collection date

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

text: Canada

text: O horizon

text: mimarks-survey

text: Bradyrhizobium sp. OTU1

characteristic: organism

text: Forest Soil Bradyrhizobium

text: Ontario

text: Bradyrhizobium sp. OTU1

text: Illumina

text: Orthic Humo-Ferric Podzol

text: soil

text: Jack Pine, Black Spruce, Red Pine


text: Cornell University

text: public

text: Dfb, Humid Continental cool summer

text: forest

text: forest

text: soil

text: soil

characteristic: environmental package

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: A horizon

characteristic: horizon

text: mimarks-survey

characteristic: investigation type

text: Bradyrhizobium sp. OTU1

text: Forest Soil Bradyrhizobium

characteristic: project name

text: Ontario

characteristic: region

characteristic: sample weight for DNA extraction

text: Bradyrhizobium sp. OTU1

text: Illumina

characteristic: sequencing method

text: Orthic Humo-Ferric Podzol

characteristic: soil classification

text: soil

characteristic: soil environmental package

characteristic: title

text: Jack Pine, Black Spruce, Red Pine

characteristic: tree cover


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MMRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Whole genome sequencing applied to miPSC line

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus


text: ROTHAMSTED RESEARCH

text: public

tag: Namespace:ROTHAMSTED RESEARCH

characteristic: collection date

text: Annotated genome assembly of Microctonus brassicae. HiFiasm used to assemble HiFi reads and haplotigs purged. Manual curation and Hi-C to bring to chromosome level. Single primary sequence assembly, not haplotype assembled. Single individual from an infected Psylliodes chrysocephala individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Single infected adult beetle from field sample collected at Rothamsted farm on 28 July 2017. GPS 51.8093, -0.3548

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Microctonus brassicae

text: Microctonus brassicae

text: Microctonus brassicae annotated genome from the Pest Genomics Initiative.


text: public

tag: Namespace:Cambridge Institute of Therapeutic Immunology & Infectious Disease

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: Protocols: Zebrafish embryos were exposed to a drug from 1 dpf to 5 dpf and at the end of the exposure period, larvae were collected as 6 pools of 7 embryos per condition for RNA extraction. Samples were lysed in 110 μl RLT buffer (Qiagen) containing 1.1 μl of 14.3M β-mercaptoethanol (Sigma). The lysate was allowed to bind to 450 μl of Agencourt AMPure XP beads (Beckman Coulter) for 15 minutes. The tubes were left on a magnet (Invitrogen) until the solutions cleared and the supernatant was removed without disturbing the beads. Whilst still on the magnet, beads were washed three times with 70% ethanol and allowed to dry for 20 minutes. Total nucleic acid was eluted from the beads following the manufacturer’s instructions and treated with DNase I (NEB, Catalogue number M0303L). Illumina TruSeq Stranded mRNA Sample Prep Kit.

text: larval day 5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: pool of 7 embryos

characteristic: individual

text: Danio rerio

text: Danio rerio

text: whole organism

characteristic: organism part

characteristic: replicate

text: Danio rerio

text: not available

characteristic: sex

text: Tüpfel long fin (TLF)

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cambridge Institute of Therapeutic Immunology & Infectious Disease

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: zebrafish

text: larval day 5

text: wild type genotype

text: pool of 7 embryos

text: Danio rerio

text: Danio rerio

text: whole organism

text: Danio rerio

text: not available

text: Tüpfel long fin (TLF)


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id


text: Plasmid

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:RADBOUD UNIVERSITY, Department Microbiology

text: Complete genome of Nitrotoga arctica 6680. The species was described in: https://doi.org/10.1038/ismej.2007.34 The genome was obtained using a hybrid assembly approached using Illumin MiSeq and Oxford Nanopore sequencing.

characteristic: description

text: permafrost soil

characteristic: isolation source

text: Candidatus Nitrotoga arctica

text: Candidatus Nitrotoga arctica

characteristic: strain

text: Candidatus Nitrotoga arctica 6680

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RADBOUD UNIVERSITY, Department Microbiology

text: public

text: Draft genome of Nitrotoga sp. HW29 obtained by MiSeq Illumina sequencing. The enrichment is described in: doi: 10.1128/AEM.03163-15

text: biofilm sample of a freshwater recirculation aquaculture system

text: Candidatus Nitrotoga sp. HW29

text: Candidatus Nitrotoga sp. HW29

text: Candidatus Nitrotoga sp. HW29


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-01-11-2021-15:09:13:256-30989

text: leaf

characteristic: cell type

text: IPK Gatersleben

characteristic: collected by

text: bread wheat

text: Attraktion

characteristic: cultivar

text: seedling

characteristic: dev stage

text: 51.816, 11.283

characteristic: lat lon

text: Triticum aestivum

text: Triticum aestivum

text: Assembly of wheat cultivar Attraktion


text: MMRI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mouse induced pluripotent stem cells (miPSCs) were reprogrammed from mouse embryonic fibroblasts (MEFs).

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Long-read nanopore sequencing of miPSCs


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MMRI

text: public

text: house mouse

text: Mouse induced pluripotent stem cells (miPSCs) reprogrammed from mouse embryonic fibroblasts (MEFs), without lamivudine (CTRL).

text: Mus musculus

text: Mus musculus

text: Long-read nanopore sequencing of miPSCs

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MMRI

characteristic: INSDC center name

text: public

text: house mouse

text: Mouse induced pluripotent stem cells (miPSCs) reprogrammed from mouse embryonic fibroblasts (MEFs), without lamivudine (CTRL)

text: Mus musculus

text: Mus musculus

text: Long-read nanopore sequencing of miPSCs


text: MMRI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mouse induced pluripotent stem cells (miPSCs) reprogrammed from mouse embryonic fibroblasts (MEFs), in the presence of lamivudine (LAM).

text: Mus musculus

text: Mus musculus

text: Long-read nanopore sequencing of miPSCs


T. brucei Lister427 BSF1

text: public

text: T. brucei Lister427 BSF1

tag: Namespace:INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

text: T. brucei Lister427 bloodstream form, isolate 1, total RNA / S. pombe

text: Trypanosoma brucei

text: Trypanosoma brucei

text: T. brucei Lister427 BSF, isolate 1


T. brucei Lister427 BSF2

text: INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

text: public

text: T. brucei Lister427 BSF2

text: T. brucei Lister427 bloodstream form, isolate 2, total RNA / S. cerevisiae total RNA / M. tuberculosis

text: Trypanosoma brucei

text: Trypanosoma brucei

text: T. brucei Lister427 BSF, isolate 2


T. brucei Lister427 PCF1

text: public

text: T. brucei Lister427 PCF1

text: T. brucei Lister427 procyclic form, isolate 1, total RNA / S. pombe

text: Trypanosoma brucei

text: Trypanosoma brucei

text: T. brucei Lister427 PCF, isolate 1


T. brucei Lister427 PCF2

text: public

text: T. brucei Lister427 PCF2

text: T. brucei Lister427 procyclic form, isolate 2, total RNA / S. cerevisiae total RNA/ M. tuberculosis

text: Trypanosoma brucei

text: Trypanosoma brucei

text: T. brucei Lister427 PCF, isolate 2


Voltaire

text: INRAE Grignon

text: public

text: Voltaire

tag: Namespace:INRAE Grignon

text: Podophage infecting Glutamicibacter arilaitensis

text: Glutamicibacter arilaitensis

characteristic: host scientific name

text: French washed-rind cheese surface

characteristic: isolation source

text: Glutamicibacter phage Voltaire

text: Glutamicibacter phage Voltaire

text: Glutamicibacter phage Voltaire


Montesquieu

tag: attribute

text: INRAE Grignon

text: public

text: Montesquieu

text: Siphophage infecting Glutamicibacter arilaitensis

text: Glutamicibacter arilaitensis

text: French washed-rind cheese surface

text: Glutamicibacter phage Montesquieu

text: Glutamicibacter phage Montesquieu

text: Glutamicibacter phage Montesquieu


Rousseau

text: INRAE Grignon

text: public

text: Rousseau

text: Siphophage infecting Brevibacterium aurantiacum

text: Brevibacterium aurantiacum

text: French washed-rind cheese surface

text: Brevibacterium phage Rousseau

text: Brevibacterium phage Rousseau

text: Brevibacterium phage Rousseau


Diderot

text: INRAE Grignon

text: public

text: Diderot

text: Siphophage infecting Leuconostoc falkenbergense

text: Leuconostoc falkenbergense

text: French washed-rind cheese surface

text: Leuconostoc phage Diderot

text: Leuconostoc phage Diderot

text: Leuconostoc phage Diderot


D'Alembert

text: INRAE Grignon

text: public

text: D'Alembert

text: Myophage infecting Psychrobacter aquimaris

text: Psychrobacter aquimaris

text: French washed-rind cheese surface

text: Psychrobacter phage D'Alembert

text: Psychrobacter phage D'Alembert

text: Psychrobacter phage D'Alembert


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: Condylostoma magnum

text: Condylostoma magnum

text: Condylostoma magnum macronuclear genome


text: University of Murcia-IMIB-Arrixaca

text: public

text: house mouse

text: Glioblastoma-Conditioned pericytes

text: Mus musculus

text: Mus musculus


text: University of Murcia-IMIB-Arrixaca

text: public

text: house mouse

text: Glioblastoma-Conditioned pericytes without CMA

text: Mus musculus

text: Mus musculus


text: EMBL

text: public

text: Replication results, Mutant I990A, treated with RppH

text: synthetic construct

text: synthetic construct


text: EMBL

text: public

text: Replication results, WT, treated with RppH

text: synthetic construct

text: synthetic construct


text: EMBL

text: public

text: Replication results, Mutant S991A, treated with RppH

text: synthetic construct

text: synthetic construct


text: EMBL

text: public

text: Transcription results, Mutant I990A, treated with RppH

text: synthetic construct

text: synthetic construct


text: EMBL

text: public

text: Transcription results, Mutant I990A, untreated with RppH

text: synthetic construct

text: synthetic construct


text: EMBL

text: public

text: Transcription results, WT, treated with RppH

text: synthetic construct

text: synthetic construct


text: EMBL

text: public

text: Transcription results, WT, untreated with RppH

text: synthetic construct

text: synthetic construct


text: UMR 261

text: public

tag: Namespace:UMR 261

text: Makerere University

characteristic: collecting institution

characteristic: collection date

text: CARAMAL

characteristic: collector name

text: malaria parasite P. falciparum

text: Plasmodium falciparum parasite harboring the artemisinin resistance K13 C469Y mutation

text: rapid diagnostic test, microscopy

characteristic: diagnostic method

text: Uganda

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: P. falciparum

characteristic: isolate

text: dried blood spot

characteristic: isolation source host associated

text: Plasmodium falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum K13 C469Y


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 261

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Makerere University

text: CARAMAL

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum parasite, K13 WT

characteristic: description

text: rapid diagnostic test, microscopy

text: Uganda

text: human

text: diseased

text: Homo sapiens

text: P. falciparum

text: dried blood spot

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: Plasmodium falciparum K13 WT

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF VETERINARY MEDICINE VIENNA

text: cheese rind sample

text: Austria

characteristic: geographic location (country and/or sea)

text: Vorarlberger Bergk�se (VB) - artisanal Austrian washed-rind hard cheese

characteristic: isolation source

text: food fermentation metagenome

text: food fermentation metagenome

text: S2-DNA_30 days of ripening


text: UNIVERSITY OF VETERINARY MEDICINE VIENNA

text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S4-DNA_90 days of ripening


text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S1-RNA_30 days of ripening


text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S2-RNA_30 days of ripening


text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S3-RNA_30 days of ripening


text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S4-RNA_90 days of ripening


text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S5-RNA_90 days of ripening


text: public

text: cheese rind sample

text: Austria

text: food fermentation metagenome

text: food fermentation metagenome

text: S6-RNA_90 days of ripening


text: RADBOUD UNIVERSITY, Department Microbiology

text: public

text: Draft genome of Candidatus Nitrotoga sp. 1052 obtained by MiSeq Illumina sequencing.

text: permafrost soil

text: Candidatus Nitrotoga sp. 1052

text: Candidatus Nitrotoga sp. 1052

characteristic: strain

text: Candidatus Nitrotoga sp. 1052


sRNA-seq

characteristic: ENA-CHECKLIST

text: Philipps University Marburg

text: public

text: sRNA-seq

tag: Namespace:Philipps University Marburg

text: Small RNA from WT extracted using miRvana kit (mid log)

text: Pseudomonas oleovorans

text: Pseudomonas oleovorans

text: sRNA-seq


WT-EarlyLog-A

characteristic: ENA-FIRST-PUBLIC

text: Philipps University Marburg

text: public

text: WT-EarlyLog-A

text: Total RNA from WT extracted with miRvana (early log)

text: Pseudomonas oleovorans

text: Pseudomonas oleovorans

text: WT-EarlyLog-A


WT-EarlyLog-B

characteristic: ENA-LAST-UPDATE

text: Philipps University Marburg

text: public

text: WT-EarlyLog-B

text: Pseudomonas oleovorans

text: Pseudomonas oleovorans

text: WT-EarlyLog-B


KO-EarlyLog-A

characteristic: External Id

text: Philipps University Marburg

text: public

text: KO-EarlyLog-A

text: Total RNA extractedCRISPR Array ko with miRvana (early log)

text: Pseudomonas oleovorans

text: Pseudomonas oleovorans

text: KO-EarlyLog-A


KO-EarlyLog-B

text: Philipps University Marburg

characteristic: INSDC center name

text: public

text: KO-EarlyLog-B

text: Total RNA from CRISPR Array ko extracted with miRvana (early log)

text: Pseudomonas oleovorans

text: Pseudomonas oleovorans

text: KO-EarlyLog-B


text: Division of Infection & Immunity, UCL

text: public

characteristic: SRA accession

tag: Namespace:Division of Infection & Immunity, UCL

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: immortal cell line cell

characteristic: cell type

text: human

text: Protocols: For the monoculture cell transcriptome experiments, the cells were cultivated in 6 well plates and stimulated for 4 hours on day 6. The supernatants were then removed, and the stimulated cells lysed with 600μl of buffer RLT (Qiagen). This was stored at -80°C until extraction.For the cocultured cells, the surface of basal chambers of 6 well transwell plates (Corning) were coated with 400ul of 15μg/ml poly-l-lysine overnight, then washed with PBS. HBVP were seeded onto the surface of the basal chambers at 5000/cm2 and allowed to adhere for 24 hours. 6.5mm diameter polycarbonate membrane transwells with 3μm pores were coated with 100μl of 75μg/ml rat collagen-I solution for 2 hours, then washed with PBS. The HBVP seeding solution was then replaced with 400ul of complete EBM-2 in each basal chamber and hCMEC/D3 cells were seeded at 50 000/cm2 onto the apical surface of the transwell membrane. The coculture transwells were stimulated for 4 hours on day 6. The transwells were then moved into a new 6 well plates and supernatants were removed from both transwells and basal chambers. The cells were then lysed separately, each with 600μl of buffer RLT (Qiagen). This was stored at -80°C until extraction. RNA samples in buffer RLT were thawed and extracted using RNeasy Mini Spin Columns according to the manufacturer’s instructions. RNA was eluted in 30μl of molecular grade water (Sigma) and quantified using a Nanodrop 2000 spectrometer.Contaminating DNA was removed through treatment with Turbo DNA-Free (Thermo), as per the manufacturer’s instructions RNA samples were provided to the PGU facility at UCL for library preparation and RNA sequencing using the Kappa Hyperprep kit (Roche) with polyA selection of mRNA and fragment size of 300-350 base pairs. During this process a unique index adapter sequence is added to each sample to enable multiplexing and then identification and sorting of libraries during computational analysis.

text: coculture

characteristic: growth condition

text: Streptococcus pneumoniae

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

characteristic: organism part

text: Homo sapiens

text: monocyte-derived macrophage conditioned media

characteristic: stimulus


text: Division of Infection & Immunity, UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: immortal cell line cell

text: human

characteristic: common name

characteristic: description

text: coculture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Infection & Immunity, UCL

characteristic: INSDC center name

text: public

text: ArrayExpress

text: immortal cell line cell

text: human

text: coculture

text: Streptococcus pneumoniae

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: Division of Infection & Immunity, UCL

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: immortal cell line cell

characteristic: cell type

text: human

text: monoculture

characteristic: growth condition

text: Streptococcus pneumoniae

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: Division of Infection & Immunity, UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: immortal cell line cell

text: human

text: coculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

characteristic: organism part

text: Homo sapiens

text: tumor necrosis factor; 10 nanogram per milliliter

characteristic: stimulus


text: Division of Infection & Immunity, UCL

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: immortal cell line cell

text: human

characteristic: common name

characteristic: description

text: monoculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Division of Infection & Immunity, UCL

text: public

text: ArrayExpress

text: immortal cell line cell

text: human

text: coculture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Infection & Immunity, UCL

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: immortal cell line cell

text: human

text: monoculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: Division of Infection & Immunity, UCL

text: public

text: ArrayExpress

characteristic: broker name

text: pericyte

characteristic: cell type

text: human

text: coculture

characteristic: growth condition

text: Streptococcus pneumoniae

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: Division of Infection & Immunity, UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: pericyte

text: human

text: coculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

characteristic: organism part

text: Homo sapiens

characteristic: stimulus


text: Division of Infection & Immunity, UCL

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: pericyte

text: human

characteristic: common name

characteristic: description

text: coculture

text: Streptococcus pneumoniae

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Division of Infection & Immunity, UCL

text: public

text: ArrayExpress

text: pericyte

text: human

text: monoculture

text: Streptococcus pneumoniae

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Infection & Immunity, UCL

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: pericyte

text: human

text: coculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: Division of Infection & Immunity, UCL

text: public

text: ArrayExpress

characteristic: broker name

text: pericyte

characteristic: cell type

text: human

text: monoculture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: Division of Infection & Immunity, UCL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: pericyte

text: human

text: coculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

characteristic: organism part

text: Homo sapiens


text: Division of Infection & Immunity, UCL

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: pericyte

text: human

text: monoculture

text: Homo sapiens

text: Homo sapiens

text: vasculature of brain

text: Homo sapiens


text: UCSDMI

text: public

characteristic: anonymized name

text: LF

characteristic: combined

characteristic: day post infection

text: LF

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: LF

characteristic: combined

characteristic: day post infection

text: LF

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

characteristic: title

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Chow

text: chow

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Chow

characteristic: combined

characteristic: day post infection

text: chow

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

characteristic: title

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: WD

text: WD

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: WD

characteristic: combined

characteristic: day post infection

text: WD

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

text: Cdiff WD

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: HFD

text: WD

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: HFD

characteristic: combined

characteristic: day post infection

text: WD

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

characteristic: title

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_12849:12849.AM.S6.chow.3.1.0326

text: Chow

text: chow

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_12849:12849.AM.S6.chow.3.1.0402

characteristic: Submitter Id

characteristic: anonymized name

text: Chow

characteristic: combined

characteristic: day post infection

text: chow

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

text: Cdiff WD

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_12849:12849.AM.S6.chow.3.1.0407

text: Chow

text: chow

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_12849:12849.AM.S6.chow.3.1.0408

characteristic: Submitter Id

characteristic: anonymized name

text: Chow

characteristic: combined

characteristic: day post infection

text: chow

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

text: Cdiff WD

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_12849:12849.AM.S6.chow.3.1.0409

text: Chow

text: chow

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_12849:12849.AM.S6.chow.3.1.0410

characteristic: Submitter Id

characteristic: anonymized name

text: Chow

characteristic: combined

characteristic: day post infection

text: chow

characteristic: diet

text: TRUE

characteristic: elevation

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Aurora

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: CUANSCHUTZ

text: FALSE

text: feces

text: mouse gut metagenome

text: female

characteristic: title

text: Cdiff WD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_12849:12849.AM.S6.chow.3.2.0326

text: Chow

text: chow

text: TRUE

text: host-associated

text: animal-associated habitat

text: feces

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: CUANSCHUTZ

text: FALSE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: subject

text: Cdiff WD