characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thomas

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Jessica Thomas

text: Wellcome Sanger Institute

text: adult

text: Athelges paguri

text: WHOLE ORGANISM

text: parasitic on SANMP2136

text: Athelges paguri

text: FEMALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: Jessica Thomas

text: Wellcome Sanger Institute

characteristic: collection date

text: common hermit crab

characteristic: common name

text: United Kingdom

unit: DD

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Jessica Thomas

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Pagurus bernhardus

characteristic: organism

text: THORAX

characteristic: organism part

characteristic: project name

text: host to SANMP2134 and SANMP2135

characteristic: relationship

characteristic: sample derived from

text: Pagurus bernhardus

text: FEMALE

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Max Brown

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Max Brown

text: Wellcome Sanger Institute

text: adult

text: Alentia gelatinosa

text: HEAD

text: Alentia gelatinosa

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Max Brown

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Max Brown

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Alentia gelatinosa

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Alentia gelatinosa

text: NOT COLLECTED

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Mark Blaxter

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Scotland | Great Cumbrae | Farland Point (East Bay)

text: Intertidal

text: Mark Blaxter

text: Wellcome Sanger Institute

text: adult

text: Anemonia viridis

text: TENTACLE

characteristic: sample derived from

text: Anemonia viridis

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Mark Blaxter

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Mark Blaxter

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Anemonia viridis

characteristic: organism

text: BODYWALL

characteristic: organism part

characteristic: project name

text: Anemonia viridis

text: NOT COLLECTED

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Max Brown

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Intertidal; Laminaria holdfast

text: Max Brown

text: Wellcome Sanger Institute

text: adult

text: Pseudoparatanais batei

text: WHOLE ORGANISM

characteristic: sample same as

text: Pseudoparatanais batei

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Max Brown

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Max Brown

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Palaemon elegans

characteristic: organism

text: TERMINAL BODY

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Palaemon elegans

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thomas

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Jessica Thomas

text: Wellcome Sanger Institute

text: adult

text: Athelges paguri

text: WHOLE ORGANISM

text: parasitic on SANMP2126

characteristic: relationship

characteristic: sample same as

text: Athelges paguri

text: MALE

text: NOT COLLECTED

text: N

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Jessica Thomas

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Jessica Thomas

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Athelges paguri

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: parasitic on SANMP2126

text: Athelges paguri

text: FEMALE

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thomas

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: common hermit crab

characteristic: common name

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Jessica Thomas

text: Wellcome Sanger Institute

text: adult

text: Pagurus bernhardus

text: THORAX

text: host to SANMP2124 and SANMP2125

characteristic: relationship

characteristic: sample derived from

text: Pagurus bernhardus

text: FEMALE

text: NOT COLLECTED

text: N

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Jessica Thomas

text: Wellcome Sanger Institute

characteristic: collection date

text: United Kingdom

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Jessica Thomas

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Athelges paguri

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: parasitic on SANMP21329

characteristic: sample same as

text: Athelges paguri

text: MALE

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thomas

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Jessica Thomas

text: Wellcome Sanger Institute

text: adult

text: Athelges paguri

text: WHOLE ORGANISM

text: parasitic on SANMP2129

characteristic: relationship

text: Athelges paguri

text: FEMALE

text: NOT COLLECTED

text: N

characteristic: tolid


characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: Tree of Life Programme

text: public

text: Jessica Thomas

text: Wellcome Sanger Institute

characteristic: collection date

text: common hermit crab

characteristic: common name

text: United Kingdom

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Jessica Thomas

characteristic: identified by

text: Wellcome Sanger Institute

text: adult

characteristic: lifestage

text: Pagurus bernhardus

characteristic: organism

text: THORAX

characteristic: organism part

characteristic: project name

text: host to SANMP2127 and SANMP2128

characteristic: sample derived from

text: Pagurus bernhardus

text: FEMALE

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre for research and Technology Hellas - Institute of Applied Biosciences

characteristic: Submitter Id

text: General Directorate of Rural Economy and Veterinary

characteristic: collecting institution

text: supervisor of Kozani veterinary department

characteristic: collector name

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Kozani

text: Mink

characteristic: host common name

text: diseased

characteristic: host health state

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: Mink

characteristic: host subject id

text: RNA

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: farm sample

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for research and Technology Hellas - Institute of Applied Biosciences

characteristic: INSDC center name

text: public

characteristic: collection date

text: Greece

text: Kozani

characteristic: geographic location (region and locality)

text: Mink

text: diseased

text: Neovison vison

text: not provided

text: Mink

text: RNA

characteristic: organism

text: farm sample

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Grevena

text: Mink

text: diseased

text: Neovison vison

text: not provided

text: Mink

text: RNA

text: farm sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: supervisor of Grevena veterinary department

text: Greece

text: Grevena

text: Mink

characteristic: host common name

text: diseased

characteristic: host health state

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: Mink

characteristic: host subject id

text: RNA

characteristic: isolate

text: farm sample

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: supervisor of Kastoria veterinary department

text: Greece

text: Kastoria

characteristic: geographic location (region and locality)

text: Mink

text: diseased

text: Neovison vison

text: not provided

text: Mink

text: RNA

characteristic: organism

text: farm sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-KO_Flag-UBF1-Rep1

tag: Namespace:Professor, Department of Molecular Biology, Medical Biochemistry and Pathology, Faculty of Medicine, Universite Laval.  Senior Investigator, Cancer Research Centre, Universite Laval.  Senior Investigator, St-Patrick Research Group in Basic Oncology, Oncology Division, Quebec University Hospital Research Centre

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: MEF cell line

characteristic: cell line

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Formaldehyde was quenched by addition of 125 mM Glycine and cells harvested and washed in PBS. Nuclei were isolated using an ultrasound-based nuclei extraction method (NEXSON: Nuclei Extraction by SONication) (ref: doi: 10.1093/nar/gkv1495. PubMed PMID: 26704968) with some modifications. Briefly, for all cell types, 33 million cells were resuspended in 1.5 ml of Farnham lab buffer (5 mM PIPES pH 8.0, 85 mM KCl, 0.5% IGEPAL, protease inhibitors). Cell suspensions were sonicated in 15 ml polystyrene tubes (BD #352095) using 3 to 4 cycles of 15 sec on : 30 sec off at low intensity in a Bioruptor (Diagenode). After recovery of the NEXSON-isolated nuclei by centrifugation (1000g, 5 min), nuclei were resuspended in 1.5 ml of shearing buffer (10 mM Tris-HCl pH 8.0, 1 mM NaEDTA, 0.1% SDS, protease inhibitors) and sonicated for 25 min, 30 sec on : 30 sec off , at high intensity. Each immunoprecipitation (IP) was carried out using the equivalent of 16 x 106 cells as previously describe (ref: doi: 10.1371/journal.pgen.1006899. PubMed PMID: 28715449). To map Ubtf1 and Ubtf2 variants cDNAs encompassing the complete coding regions (Genbank: M61726 / M61725) were subcloned into pCDNA3-3xFLAG-C1 (N. Bisson) and verified by Sanger sequencing. The resulting pC3xFLAG-UBF1 and -UBF2 (lab. stocks #2072, #2073) constructs were used to transfect NIH3T3 or conditional ubtf (ubtffl/fl/ER-Cre+/+/p53-/-) MEFs (Herdman et al., 2017) and cultures selected with G418. In the case of NIH3T3, pools of positive clones expressing Ubtf1 or Ubtf2 at sub-endogenous levels were then subjected to parallel ChIP for FLAG-Ubtf1/2 (anti-FLAG) and total Ubtf. Essentially the same procedure was used for the MEFs except that cells were transfected with pCDNA3Hygro-3xFLAG-UBF1 and -UBF2 (lab. stocks #2273, #2274), expressing clones selected with Hygromycin and these used in ChIP experiments 5 days after ubtf inactivation by 4-HT addition or after mock inactivation to eliminate endogenous Ubtf. DNase-Seq analysis of MEFs was carried out following the published protocol (ref: doi: 10.1038/nmeth.2762. PubMed PMID: 24317252), the only modifications being adjustment of digestion levels to obtain the required fragmentation. DNA samples were quality controlled by qPCR before size selection following the published protocol. Immunoprecipitated chromatin was treated with RNaseA. The DNA was isolated using 2% NaSDS and 2mg.ml-1 Proteinase-K, phenol:chloroform extraction using glycogen as carrier and finally ethanol precipitation. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end or paired-end sequencing on an Illumina HiSeq 2500 or 4000, or NovaSeq 6000 (McGill University and Genome Quebec Innovation Centre).

characteristic: description

text: embryo stage

characteristic: developmental stage

text: UBTFfl/fl/ER-Cre+/+/p53-/-/3xFLAG-ubtf1+

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Professor, Department of Molecular Biology, Medical Biochemistry and Pathology, Faculty of Medicine, Universite Laval. Senior Investigator, Cancer Research Centre, Universite Laval. Senior Investigator, St-Patrick Research Group in Basic Oncology, Oncology Division, Quebec University Hospital Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-KO_Flag-UBF1-Rep2

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-KO_Flag-UBF2-Rep1

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-KO_Flag-UBF2-Rep2

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-KO_0u

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: MEF cell line

characteristic: cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-KO_100u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-KO_150u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-KO_50u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-FL_Flag-UBF1-Rep1

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-FL_Flag-UBF1-Rep2

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


text: public

characteristic: SRA accession

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-FL_Flag-UBF2-Rep1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

text: E-MTAB-11385:ChIP-Seq_Flag_MEF_UBF-FL_Flag-UBF2-Rep2

text: ArrayExpress

text: MEF cell line

characteristic: cell line

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-FL_0u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-FL_100u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-FL_150u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo stage

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-11385:Dnase-Seq_Taf1b_MEF_Taf1b-FL_50u

text: ArrayExpress

text: MEF cell line

text: mouse embryonic fibroblast cell

text: house mouse

text: Protocols: Cells were fixed with 1% formaldehyde for 8 min at room temperature. Formaldehyde was quenched by addition of 125 mM Glycine and cells harvested and washed in PBS. Nuclei were isolated using an ultrasound-based nuclei extraction method (NEXSON: Nuclei Extraction by SONication) (ref: doi: 10.1093/nar/gkv1495. PubMed PMID: 26704968) with some modifications. Briefly, for all cell types, 33 million cells were resuspended in 1.5 ml of Farnham lab buffer (5 mM PIPES pH 8.0, 85 mM KCl, 0.5% IGEPAL, protease inhibitors). Cell suspensions were sonicated in 15 ml polystyrene tubes (BD #352095) using 3 to 4 cycles of 15 sec on : 30 sec off at low intensity in a Bioruptor (Diagenode). After recovery of the NEXSON-isolated nuclei by centrifugation (1000g, 5 min), nuclei were resuspended in 1.5 ml of shearing buffer (10 mM Tris-HCl pH 8.0, 1 mM NaEDTA, 0.1% SDS, protease inhibitors) and sonicated for 25 min, 30 sec on : 30 sec off , at high intensity. Each immunoprecipitation (IP) was carried out using the equivalent of 16 x 106 cells as previously describe (ref: doi: 10.1371/journal.pgen.1006899. PubMed PMID: 28715449). To map Ubtf1 and Ubtf2 variants cDNAs encompassing the complete coding regions (Genbank: M61726 / M61725) were subcloned into pCDNA3-3xFLAG-C1 (N. Bisson) and verified by Sanger sequencing. The resulting pC3xFLAG-UBF1 and -UBF2 (lab. stocks #2072, #2073) constructs were used to transfect NIH3T3 or conditional ubtf (ubtffl/fl/ER-Cre+/+/p53-/-) MEFs (Herdman et al., 2017) and cultures selected with G418. In the case of NIH3T3, pools of positive clones expressing Ubtf1 or Ubtf2 at sub-endogenous levels were then subjected to parallel ChIP for FLAG-Ubtf1/2 (anti-FLAG) and total Ubtf. Essentially the same procedure was used for the MEFs except that cells were transfected with pCDNA3Hygro-3xFLAG-UBF1 and -UBF2 (lab. stocks #2273, #2274), expressing clones selected with Hygromycin and these used in ChIP experiments 5 days after ubtf inactivation by 4-HT addition or after mock inactivation to eliminate endogenous Ubtf. DNase-Seq analysis of MEFs was carried out following the published protocol (ref: doi: 10.1038/nmeth.2762. PubMed PMID: 24317252), the only modifications being adjustment of digestion levels to obtain the required fragmentation. DNA samples were quality controlled by qPCR before size selection following the published protocol. Immunoprecipitated chromatin was treated with RNaseA. The DNA was isolated using 2% NaSDS and 2mg.ml-1 Proteinase-K, phenol:chloroform extraction using glycogen as carrier and finally ethanol precipitation. ChIP DNA samples were quality controlled by qPCR before being sent for library preparation and 50 base single-end or paired-end sequencing on an Illumina HiSeq 2500 or 4000, or NovaSeq 6000 (McGill University and Genome Quebec Innovation Centre).

text: embryo stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF OSLO

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF OSLO

characteristic: Submitter Id

characteristic: collection date

text: Atlantic puffin

text: Greenland

characteristic: geographic location (country and/or sea)

text: Thule

characteristic: isolation source

text: Fratercula arctica

text: Fratercula arctica

text: Female

characteristic: sex

text: Blood

characteristic: tissue type

text: Raw sequence metadata of Atlantic puffin whole genome resequencing

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

characteristic: common name

text: Greenland

text: Thule

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Blood


E-MTAB-11284:Sample 1

characteristic: ENA-CHECKLIST

text: IRB Barcelona / BIST

characteristic: INSDC center name

text: public

text: E-MTAB-11284:Sample 1

tag: Namespace:IRB Barcelona / BIST

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: AKTP organoids were derived from genetically-modified mice bearing conditional alleles in homologues of four key human CRC mutations: Apcfl/fl, KrasLSL-G12D, Tgfbr2fl/fl and Trp53fl/fl (designated A, K, T and P, respectively) and targeted gene recombination to intestinal stem cells by means of the Lgr5eGFP-creERT2 driver. Intra-caecum injections of mouse tumor organoids carrying Apc, K-ras, p53 and TGFBR2 driver alterations were used for the generation of primary tumors at 7 to 9 weeks of age. Mice were anesthetized with isoflurane and placed in dorsal recumbency. The abdomen was shaved and sterilized with providone-iodine surgical solution. A small midline incision - slightly to the left- was performed to open the skin and peritoneum and expose the abdominal area. We placed a sterile surgical drape on top of the abdomen with a circular hole above the incision and sprawled the caecum over the drape using cotton swabs and saline to keep it hydrated. After confirming the presence of a primary tumour, Kelly forceps were used to first knot the surgical suture into the caecum wall, in between the ileocecal junction and the primary tumour. This provided a grip for subsequent caecum ligation. After ligation, the apical caecum containing the primary tumour was excised and any remaining cecal tissue was trimmed. Primary tumours were chopped with razor blades. Subsequent enzymatic digestion was performed with 200 U/ml collagenase IV (Sigma Aldrich) in HBSS (Lenovo) for 30 min at 37 °C, in a shaking water bath or a gentleMACS Dissociator (Miltenyi Biotec). Digested tissue fragments were then filtered through 100- and 40-μm meshes, washed and treated for 5 minutes with ammonium chloride. Single-cell preparations were first blocked with anti-CD16/32 (clone 93; eBioscience) and then stained with APC anti-Epcam (118214; Biolegend) and BV605 anti-CD45 (103155, Biolegend) antibodies. Finally, cells were resuspended in HBSS with 0.5% FBS and DAPI (Sigma Aldrich). RNA from 2000 cells was extracted and retrotranscribed to cDNA as described previously From FACS analysis, single cells were sorted into 1.5 mL tubes (Eppendorf). Cell concentration was adjusted to approximately 1,000 cells/μl and approximately 8,300 sorted cells were used for 3’ single-cell gene expression profiling. Cell partition into GEMs was carried out on the Chromium platform (10x Genomics), according to the manufacturer instructions for. Briefly, 5,000 cells were targeted for partitioning into GEMS and the reverse-transcribed cDNA was amplified using 12 cycles. The resulting cDNA was quality controlled using a high sensitivity DNA assay on the Bioanalyzer 2100 (Agilent) system. The purified libraries were quality controlled, quantified and used to prepare a 20 nM equimolar sequencing pool.

characteristic: description

text: adult

characteristic: developmental stage

text: Lgr5eGFP-creERT2; Apcfl/fl; KrasLSL-G12D; Tgfbr2fl/fl; Trp53fl/fl

characteristic: genotype

text: injection of mouse tumor organoids grown until neoplasm formation

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: distal caecum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

characteristic: strain

text: Sample 1


E-MTAB-11284:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: IRB Barcelona / BIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11284:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: distal caecum

text: neoplasm

text: Mus musculus

text: Sample 2


E-MTAB-11284:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRB Barcelona / BIST

text: public

text: E-MTAB-11284:Sample 3

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: Mus musculus

text: Mus musculus

text: distal caecum

text: neoplasm

text: Mus musculus

text: Sample 3

characteristic: title


E-MTAB-11284:Sample 4

text: IRB Barcelona / BIST

characteristic: INSDC center name

text: public

text: E-MTAB-11284:Sample 4

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: distal caecum

text: neoplasm

text: Mus musculus

text: Sample 4


characteristic: ENA-FIRST-PUBLIC

text: West German Genome Centre

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

text: KENNETH DUMACK

characteristic: collected by

text: UNIVERSITY OF COLOGNE

characteristic: collecting institution

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North Rhine Westphalia | Cologne | Campus of the University | Zuelpicher Strasse 47b

characteristic: geographic location (region and locality)

text: meadow, phyllosphere

characteristic: habitat

text: KENNETH DUMACK

characteristic: identified by

text: UNIVERSITY OF COLOGNE

text: vegetative cell

characteristic: lifestage

text: Rhogostoma pseudocylindrica

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: KENNETH DUMACK

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: UNIVERSITY OF COLOGNE

characteristic: sample coordinator affiliation

text: Rhogostoma pseudocylindrica

text: ERGA KD 0483 01

characteristic: specimen id

text: Oberoesterreichischeslandesmuseum:Rhogostoma pseudocylindrica 2019 78

characteristic: specimen voucher

text: 00a026e2-8828-415e-834c-e7776f0f539c-ERGA-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West German Genome Centre

characteristic: GAL

text: ERGA KD 0483 01

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: KENNETH DUMACK

characteristic: collected by

text: UNIVERSITY OF COLOGNE

characteristic: collecting institution

text: Germany

text: meadow, phyllosphere

text: KENNETH DUMACK

text: UNIVERSITY OF COLOGNE

text: vegetative cell

text: Rhogostoma pseudocylindrica

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: KENNETH DUMACK

text: UNIVERSITY OF COLOGNE

characteristic: sample same as

text: Rhogostoma pseudocylindrica

text: ERGA KD 0483 01

text: 2013655f-1060-46a1-9842-596f998c682d-erga

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Florence

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

text: CZESŁAW NARKIEWICZ

text: MUZEUM PRZYRODNICZE W JELENIEJ GÓRZE

characteristic: collection date

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: woj. dolnoslaskie | pow. boleslawiecki | Tomislaw | Zagajnik

characteristic: geographic location (region and locality)

text: forest soil (ENVO:00002261)

characteristic: habitat

text: BŁAŻEJ GIERCZYK

characteristic: identified by

text: THE ADAM MICKIEWICZ UNIVERSITY

text: spore-bearing structure

characteristic: lifestage

text: Astraeus hygrometricus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: JULIA PAWLOWSKA

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: UNIVERSITY OF WARSAW | POLISH MYCOLOGICAL SOCIETY

characteristic: sample coordinator affiliation

text: Astraeus hygrometricus

text: SEXUAL MORPH

characteristic: sex

text: ERGA JP PL 01

characteristic: specimen id

characteristic: specimen voucher

text: 164055a9-090c-4fa9-aef0-c7f7fb776443-ERGA-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Florence

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: CZESŁAW NARKIEWICZ

characteristic: collected by

text: MUZEUM PRZYRODNICZE W JELENIEJ GÓRZE

characteristic: collecting institution

characteristic: collection date

text: Poland

text: woj. dolnoslaskie | pow. walbrzyski | gm. Stare Bogaczowice | Cieszow | Gora Kruczyce

text: forest soil (ENVO:00002261)

text: BŁAŻEJ GIERCZYK

text: THE ADAM MICKIEWICZ UNIVERSITY

text: spore-bearing structure

text: Astraeus hygrometricus

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: JULIA PAWLOWSKA

text: Astraeus hygrometricus

text: SEXUAL MORPH

text: ERGA JP PL 02

text: 2b614b7a-6d80-4348-af83-cb563b99fd94-ERGA-specimen

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Florence

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

text: MACIEJ ZALAS | BŁAŻEJ GIERCZYK

text: THE ADAM MICKIEWICZ UNIVERSITY

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: woj. dolnoslaskie | pow. zgorzelecki | gm. Węgliniec | Węgliniec

characteristic: geographic location (region and locality)

text: village (ENVO:01000773)

characteristic: habitat

text: BŁAŻEJ GIERCZYK

characteristic: identified by

text: THE ADAM MICKIEWICZ UNIVERSITY

text: spore-bearing structure

characteristic: lifestage

text: Astraeus hygrometricus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: JULIA PAWLOWSKA

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Astraeus hygrometricus

text: SEXUAL MORPH

characteristic: sex

text: ERGA JP PL 03

characteristic: specimen id

characteristic: specimen voucher

text: 6828a0f9-71ae-4027-8bbc-95bed068d952-ERGA-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Florence

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: CZESŁAW NARKIEWICZ

characteristic: collected by

text: MUZEUM PRZYRODNICZE W JELENIEJ GÓRZE

characteristic: collecting institution

characteristic: collection date

text: Poland

text: forest soil (ENVO:00002261)

text: BŁAŻEJ GIERCZYK

text: THE ADAM MICKIEWICZ UNIVERSITY

text: spore-bearing structure

text: Astraeus hygrometricus

characteristic: organism

text: SPORE BEARING STRUCTURE

text: ERGA

text: JULIA PAWLOWSKA

characteristic: sample derived from

text: Astraeus hygrometricus

text: SEXUAL MORPH

text: ERGA JP PL 01

text: 5b2e0a09-215e-4d4b-86a6-c86a51c5fab1-erga

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Florence

text: EarlhamInstitute

text: public

text: COPO

text: CZESŁAW NARKIEWICZ

text: MUZEUM PRZYRODNICZE W JELENIEJ GÓRZE

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: forest soil (ENVO:00002261)

characteristic: habitat

text: BŁAŻEJ GIERCZYK

characteristic: identified by

text: THE ADAM MICKIEWICZ UNIVERSITY

text: spore-bearing structure

characteristic: lifestage

text: Astraeus hygrometricus

text: SPORE BEARING STRUCTURE

characteristic: organism part

text: ERGA

characteristic: project name

text: JULIA PAWLOWSKA

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Astraeus hygrometricus

text: SEXUAL MORPH

characteristic: sex

text: ERGA JP PL 02

characteristic: specimen id

characteristic: specimen voucher

text: 1f8deea6-3a10-4086-973a-6e5e0fba8226-erga

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Florence

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: MACIEJ ZALAS | BŁAŻEJ GIERCZYK

characteristic: collected by

text: THE ADAM MICKIEWICZ UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: Poland

text: village (ENVO:01000773)

text: BŁAŻEJ GIERCZYK

text: THE ADAM MICKIEWICZ UNIVERSITY

text: spore-bearing structure

text: Astraeus hygrometricus

characteristic: organism

text: SPORE BEARING STRUCTURE

text: ERGA

text: JULIA PAWLOWSKA

characteristic: sample derived from

text: Astraeus hygrometricus

text: SEXUAL MORPH

text: ERGA JP PL 03

text: 4647c04a-d307-4126-85da-e6d0141a83d1-erga

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universidad San Francisco de Quito

text: public

tag: Namespace:Universidad San Francisco de Quito

text: fecal

characteristic: description

text: human gut

characteristic: environment (biome)

text: fecal environment

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Ecuador

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: gut metagenome

text: Gut resistome in small children

characteristic: project name

text: gut metagenome

text: Illumina NovSeq 6000 SP

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011437791101/2021

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011437791301/2021

characteristic: organism

characteristic: title


text: Medisupport

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439113801/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439113901/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439114001/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439114101/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439114301/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439114401/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439114501/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439114601/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439114701/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439115201/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439115301/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439115501/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439115601/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439115701/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439115801/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439115901/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439116001/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439116101/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439117101/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439117201/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439117301/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439117401/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439117501/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439117601/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439117701/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439117801/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439117901/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439118001/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439118301/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439118401/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439118501/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439118601/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439118701/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439118801/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439118901/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439119001/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439119101/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439119201/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439119401/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439119501/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439119601/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439119701/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439119801/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439119901/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439120101/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011439120201/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011439120301/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Polyanalytic SA, Avenue de Sévelin 18, CH-1004 Lausanne

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493533501/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493592001/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493601301/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493822801/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493839401/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493852101/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493854601/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493858801/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493876601/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493888901/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493907701/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493910701/2022

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493912201/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Polyanalytic SA, Avenue de Sévelin 18, CH-1004 Lausanne

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493922301/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493922901/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493926301/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493926901/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493927401/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493929601/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493954701/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493955701/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493958501/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493968201/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493980001/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493996801/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493997101/2022

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

text: Polyanalytic SA, Avenue de Sévelin 18, CH-1004 Lausanne

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493997501/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493997801/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021493999601/2022


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-DIA-021493999801/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Dianalabs-Valais SA, Avenue de la Gare 31-33, CH-1905 Sion

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-DIA-031342405501/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: BBV SA, Avenue Léopold Robert 16-18, CH-2300 La Chaux-de-Fonds

characteristic: collecting institution

characteristic: collection date

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

characteristic: collector name

text: Switzerland

text: NE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/NE-DIA-121351036301/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: SIB

text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: Martinetti Lucchini Gladys, Valeria Spina

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26605446/2022

characteristic: isolate

characteristic: sample capture status


E-MTAB-11289:Sample 1

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11289:Sample 1

tag: Namespace:ETH ZURICH

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Cell lines were harvested following transfection into safe harbor loci. Single-cell from human PBMCs were isolated following transfection and processed using 10x genomics. Jurkat and HEK293T cells were edited to integrate CMV-mRuby expressing cassette into Rogi2 genomic safe harbor site using Cas9 RNP RNA for bulk RNA-seq was extracted using Trizol. Single-cell RNA sequencing was performed in accordance to 10x genomics involving microfluidic capture (cat number 1000075). Briefly, single cells were co- encapsulated with gel beads (10X Genomics, Single cell 10X libraries were constructed from the isolated single cells following the Chromium Single Cell 3ʹ GEM, Library & Gel Bead Kit v3 (10X Genomics, PN-1000075). Briefly, single cells were co- encapsulated with gel beads (10X Genomics, 2000059) in droplets using Chromium Single Cell B Chip (10X Genomics, 1000074)

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-11289:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH

text: public

text: E-MTAB-11289:Sample 2

text: ArrayExpress

characteristic: broker name

text: human

text: embryo

text: normal

text: CMV-mRuby into Rogi2 locus

characteristic: genetic modification

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 2


E-MTAB-11289:Sample 5

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11289:Sample 5

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 5


E-MTAB-11289:Sample 6

text: ETH ZURICH

text: public

characteristic: SRA accession

text: E-MTAB-11289:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: embryo

text: normal

text: CMV-mRuby into Rogi2 locus

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 6


E-MTAB-11289:Sample 3

text: ETH ZURICH

text: public

text: E-MTAB-11289:Sample 3

text: ArrayExpress

text: Jurkat

text: T cell

characteristic: cell type

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: acute T cell leukemia

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 3


E-MTAB-11289:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH

text: public

text: E-MTAB-11289:Sample 4

text: ArrayExpress

text: Jurkat

text: T cell

text: human

text: adult

text: acute T cell leukemia

text: CMV-mRuby into Rogi2 locus

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 4

characteristic: title