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characteristic: organism

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characteristic: GISAID Accession ID

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text: Severe acute respiratory syndrome coronavirus 2

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text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

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characteristic: GISAID Accession ID

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text: public

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text: Martinetti Lucchini Gladys, Valeria Spina

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text: hCoV-19/Switzerland/TI-EOC-26570250/2022

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text: hCoV-19/Switzerland/TI-EOC-26570473/2022


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text: hCoV-19/Switzerland/TI-EOC-26573315/2022

characteristic: isolate

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characteristic: GISAID Accession ID

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text: public

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text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26574397/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: public

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text: SIB

characteristic: broker name

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text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26580014/2022


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text: public

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text: Switzerland

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text: Human

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text: Homo sapiens

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text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26580458/2022

characteristic: isolate

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characteristic: External Id

text: public

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text: SIB

characteristic: collector name

text: Switzerland

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text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26582511/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: GISAID Accession ID

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text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

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characteristic: collecting institution

characteristic: collection date

text: Switzerland

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text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26572643/2022


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: Switzerland

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text: Homo sapiens

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26585159/2022

characteristic: isolate

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characteristic: GISAID Accession ID

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text: public

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text: SIB

text: EOC Ospedale Regionale di Mendrisio Beata Vergine OBV, Mendrisio,Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26445501/2021

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: SIB

characteristic: broker name

text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26473621/2021


E-MTAB-11353:Sample 1

text: the Fourth Military Medical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11353:Sample 1

tag: Namespace:the Fourth Military Medical University

text: ArrayExpress

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: To generate the murine bone marrow-derived macrophages (mBMDM), the femur and tibia were removed from the sacriﬁced adult mice. The bones were ﬁrst rinsed with sterile phosphate-buffered saline (PBS) containing 0.1% (v/v) penicillin-streptomycin (P/S) solution. Subsequently, the bone marrow was ﬂushed with Roswell Park Memorial Institute 1640 (RPMI 1640, Hyclone) containing 10% FBS and 0.1% P/S and filtered with the cell strainer (70 mm). Cells were resuspended with RPMI 1640 after centrifugation, and then primed with CSF (20 ng/ml, PeproTech) with medium exchange every other day for four days to generate mBMDM. The mBMDM were infected with Hantann viruses(HTNV) at an MOI of 1 or mock infected with Co60-inactivated HTNV, and were collected for RNA-seq at 0, 12, 24 and 36 hpi (three repeats for each group). Total RNA was extracted from WT mBMDM at 0, 12, 24 or 36 hpi using the TRIzol (Invitrogen). The ribosomal RNA was removed using the Ribo-Zero™ kit (Epicentre Biotechnologies). To remove trailing sequences below a phred quality score of 20 and achieve uniform sequence lengths for downstream clustering processes, raw fastq sequences were treated with Trimmomatic tools (v 0.36) using the following options: TRAIL-ING: 20, MINLEN: 235 and CROP: 235. Sequencing read quality was inspected using the FastQC software. Adapter removal and read trimming were performed using Trimmomatic. Sequencing reads were trimmed from the end (base quality less than Q20) and filtered by length (less than 25). Fragmented RNA (the average length was approximately 200 bp) were subjected to the first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB). The purified library products were evaluated using the Agilent 2200 TapeStation and Qubit®2.0 (Life Technologies). The libraries were paired-end sequenced (PE150, Sequencing reads were 150 bp) at Guangzhou Ribo Biotechnology (Guangzhou, China) using Illumina HiSeq 3000 platform.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Co60-inactivated Orthohantavirus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: Sample 1


E-MTAB-11353:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: the Fourth Military Medical University

text: public

characteristic: INSDC status

text: E-MTAB-11353:Sample 2

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: adult

text: normal

text: Co60-inactivated Orthohantavirus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 2

characteristic: title


E-MTAB-11353:Sample 3

text: the Fourth Military Medical University

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-11353:Sample 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: bone marrow macrophage

text: house mouse

text: adult

text: normal

text: Co60-inactivated Orthohantavirus

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 3


E-MTAB-11353:Sample 4

text: the Fourth Military Medical University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11353:Sample 4

text: ArrayExpress

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 4


E-MTAB-11353:Sample 5

text: the Fourth Military Medical University

text: public

text: E-MTAB-11353:Sample 5

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: Hantavirus infectious disease

characteristic: disease

text: Orthohantavirus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 5


E-MTAB-11353:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: the Fourth Military Medical University

text: public

text: E-MTAB-11353:Sample 6

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: Sample 6


E-MTAB-11353:Sample 7

characteristic: External Id

text: the Fourth Military Medical University

text: public

characteristic: INSDC status

text: E-MTAB-11353:Sample 7

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 7

characteristic: title


E-MTAB-11353:Sample 8

text: the Fourth Military Medical University

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-11353:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: bone marrow macrophage

text: house mouse

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 8


E-MTAB-11353:Sample 9

text: the Fourth Military Medical University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11353:Sample 9

text: ArrayExpress

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 9


E-MTAB-11353:Sample 10

text: the Fourth Military Medical University

text: public

text: E-MTAB-11353:Sample 10

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: Hantavirus infectious disease

characteristic: disease

text: Orthohantavirus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 10


E-MTAB-11353:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: the Fourth Military Medical University

text: public

text: E-MTAB-11353:Sample 11

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: Sample 11


E-MTAB-11353:Sample 12

characteristic: External Id

text: the Fourth Military Medical University

text: public

characteristic: INSDC status

text: E-MTAB-11353:Sample 12

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: adult

text: Hantavirus infectious disease

text: Orthohantavirus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 12

characteristic: title


text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

characteristic: Submitter Id

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, monitoring random samples from active surveillance / active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: description

text: Estonia

text: human

text: not provided

text: Homo sapiens

text: male

text: host subject id

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: title


text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

text: diseased

text: Homo sapiens

text: male

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: diseased

text: Homo sapiens

text: female

text: host subject id

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: healthy

text: Homo sapiens

text: male

text: host subject id

characteristic: organism

characteristic: title


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human

characteristic: host common name

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

text: diseased

text: Homo sapiens

text: male

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center of Biological Engineering

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Center of Biological Engineering

text: This are scaffolds, obtained from an anaerobic sludge, collected from a brewery wastewater treatment plant, which was the inoculum to develop long-chain fatty acids (specifically stearic acids) degrading cultures. The FastQ files were submitted to preprocessing and assembling with MOSCA (by using the tools FastQC, Trimmomatic and MetaSPAdes).

text: Yes

characteristic: environmental sample

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Anaerobic sludge degrading stearic acid


text: public

characteristic: SRA accession

tag: Namespace:Public Health Authority of the Slovak Republic

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

characteristic: broker name

text: Public Health Authority of the Slovak Republic, Trnavská cesta 52, 826 45 Bratislava, Slovakia

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Authority of the Slovak Republic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

text: not collected

text: Homo sapiens

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing

characteristic: title


text: THE ROSLIN INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:THE ROSLIN INSTITUTE

characteristic: Submitter Id

characteristic: collection date

characteristic: culture collection

text: Yes

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: not provided

text: free-living amoeba

text: Environmental

characteristic: isolation source

text: not provided

characteristic: lat lon

characteristic: organism

text: pneumophila

characteristic: sub species

text: Legionella pneumophila subsp. pneumophila from the Scottish Microbiology Reference Lab collection 1984-2020


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

text: public

text: No

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Clinical

text: not provided

text: Legionella pneumophila subsp. pneumophila

text: pneumophila


text: THE ROSLIN INSTITUTE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: No

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

text: homo sapiens

text: Clinical

text: not provided

text: pneumophila

characteristic: title


text: THE ROSLIN INSTITUTE

text: public

characteristic: collection date

characteristic: culture collection

text: Yes

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: not provided

text: free-living amoeba

text: Environmental

characteristic: isolation source

text: not provided

characteristic: lat lon

characteristic: organism

text: pneumophila


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

text: public

text: Yes

text: United Kingdom

text: Scotland

text: not provided

characteristic: host health state

text: free-living amoeba

text: Environmental

text: not provided

text: Trimmomatic

characteristic: read quality filter

text: pneumophila

characteristic: sub species


characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6135-4538/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6136-4539/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6137-4542/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6138-4546/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6139-4547/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6140-4548/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6111-4474/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6112-4480/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6113-4482/2022

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6114-4488/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6115-4489/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6116-4490/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6117-4491/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6118-4493/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6119-4494/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6120-4495/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6121-4497/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6122-4503/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6123-4506/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6124-4509/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6125-4510/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6126-4511/2022

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6127-4513/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6128-4519/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6129-4521/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

characteristic: collection date

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6130-4522/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6132-4534/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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RM3585������������

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