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text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Westmeath

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/WH-NVRL-G22IRL01961/2021

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/WH-NVRL-G22IRL01956/2022

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Westmeath

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/WH-NVRL-G22IRL01958/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/WH-NVRL-G22IRL01962/2021

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Westmeath

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/WH-NVRL-G22IRL01960/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/WH-NVRL-G22IRL01963/2022

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

tag: Namespace:Shenzhen Key Laboratory of Gene Regulation and Systems Biology Department of Biology School of Life Sciences Southern University of Science and Technology

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Cells were cultured according to standard procedures in RPMI 1640 for K562 and GM12878 cells or DMEM for HEK293T and NIH3T3 cells, supplemented with 10% FBS (Gibco), 100 U/ml penicillin, and 100 μg/ml streptomycin sulfate. HEK293T and NIH3T3 cells were digested with 0.25% Trypsin for preparing single-cell suspension. hESC H1 cells were cultured according to standard procedures in mTeSR1 (STEMCELL) on Corning Matrigel hESC-Qualified Matrix (Corning). hESCs at 80% confluence were harvested using StemPro Accutase cell dissociation reagent (Thermo Fisher). Nuclei acid was extracted using 0.8× VAHTS DNA cleaning beads and elute in 20 μl Nuclease-free Water. For final ATAC+RNA library amplification in the plate-based workflow, 15 μl of purified pre-library was mixed with 2.5 μl RNA_plate_S5xx primer, 2.5 μl ATAC_plate_S5xx primer, 5 μl illumina P7 primer, and 25 μl Q5 High-Fidelity 2× Master Mix. PCR was performed as follows: 98 °C 1 min; 10 cycles of: 98 °C 20 s, 63 °C 20 s, 72 °C 1 min; 1 cycle of 72 °C 5 min; then hold at 10 °C. Final library was purified using 1.2× VAHTS DNA cleaning beads and elute in 20 μl Nuclease-free Water. For final ATAC library amplification in the 10x droplet workflow, 40 μl of purified 10x ATAC pre-library was mixed with 50 μl Q5 High-Fidelity 2× Master Mix, 5 µl Illumina P5 primer (10 µM), and 5 µl ATAC_droplet_N7xx primer (10 µM). PCR was performed as follows: 98 °C 1 min; 7 cycles of: 98 °C 20 s, 63 °C 20 s, 72 °C 20 s; 1 cycle of 72 °C 1 min; then hold at 10 °C. Final ATAC library was purified using 1.0× VAHTS DNA cleaning beads and elute in 20 μl Nuclease-free Water. For final RNA library amplification in the 10x droplet workflow, 40 μl of purified 10x RNA pre-libraries was mixed with 50 μl Q5 High-Fidelity 2X Master Mix, 5 µl Illumina P5 primer (10 µM), and 5 µl RNA_droplet_N7xx primer (10 µM). PCR was performed as follows: 98 °C 1 min; 7 cycles of: 98 °C 20 s, 63 °C 20 s, 72 °C 20 s; 1 cycle of 72 °C 1 min; then hold at 10 °C. Final RNA library was purified using 0.8× VAHTS DNA cleaning beads and elute in 20 μl Nuclease-free Water. These basically a combination of ATAC-seq and SHERRY protocols. FACS library: In this case both RNA and ATAC have four files: R1 (variable length), R2 (variable length), I1 (8 bp) and I2 (8 bp). The combination of I1 and I2 are the cell barcodes (8 + 8 = 16 bp).For RNA, the first 10 bp of R1 are UMIs, and the rest are discarded. R2 is the cDNA read. For ATAC, both R1 and R2 are gDNA reads. Droplet strategy: both RNA and ATAC have three files: R1 (151 bp), R2 (151 bp) and I2 (16 bp). The cell barcodes are basically I2 (16 bp). For RNA, the first 10 bp of R2 are UMIs, and the rest are discarded. R1 is the cDNA read. For ATAC, both R1 and R2 are gDNA reads. For Chromatin tagmentation (ATAC-seq), nuclei were resuspended in 50 μl of Tn5-S5/S7 tagmentation mix containing 33 mM Tris-acetate, pH 7.8, 66 mM potassium acetate, 10 mM magnesium acetate, 16% dimethylformamide (DMF, sigma), 0.01% digitonin, 1.2 U/μl RiboLock Rnase inhibitor, 0.4 U/μl SUPERaseIn (Thermo Fisher), 0.8 U/μl RnaseOUT (Thermo Fisher), and 5 μl Tn5-S5/S7 transposome complex. The tagmentation reaction was done on a thermomixer at 800 rpm, 30 °C, 30 min. The reaction was then stopped by adding equal volume (50 μl) of tagmentation stop buffer (10 mM Tris-HCl pH 7.8, 20 mM EDTA, pH 8.0, 2% BSA). Then proceed to the SHERRY section. The SHERRY (Sequencing HEteRo RNA-DNA-hYbrid, doi: 10.1073/pnas.1919800117) method was used for the RNA portion of the library. Briefly, Aater chromatin tagmentation, nuclei were spun down at 1000g, 4°C, 3 min, and washed twice with 200 μl of ice-cold 0.5× DPBS-0.5% BSA containing 0.2 U/μl RiboLock Rnase inhibitor. Nuclei were resuspended in 100 μl of reverse transcription mix containing 0.5 mM dNTP, 10 U/μl Maxima H minus reverse transcriptase, 0.8 U/μl RiboLock Rnase inhibitor, 0.2 U/μl SUPERaseIn, 0.4 U/μl RnaseOUT, 12% PEG8000, 50 mM Tris-HCl, pH 8.0, 75 mM sodium chloride, 3 mM magnesium chloride, 10 mM dithiothreitol, and 2 μM TruseqR1_oligo_dT for the plate-based workflow or 2 μM TruseqR2_oligo_dT for the 10x droplet workflow. The in-situ reverse transcription reaction was performed as follows: 50°C 10 min; then 3 cycles of: 8°C 12s, 15°C 45s, 20°C 45s, 30°C 30s, 42°C 2 min, 50°C 3 min; followed by a final step at 50°C for 5 min. After reverse transcription, nuclei were spun down at 800g, 4°C, 5 min, and washed twice with 200 μl of ice-cold 0.5× DPBS-0.5% BSA, then resuspended in 50 μl of tagmentation mix containing 33 mM Tris-acetate, pH 7.8, 66 mM potassium acetate, 10 mM magnesium acetate, 16% dimethylformamide (DMF, sigma), 0.01% digitonin, and 1.5 μl of Tn5-S7/S7 transposome for the plate-based workflow or 1.5 μl of Tn5-S5/S5 for the 10x droplet workflow. The tagmentation reaction was done on a thermomixer at 800 rpm, 37 °C, 30 min. The reaction was then stopped by adding equal volume (50 μl) of tagmentation stop buffer (10 mM Tris-HCl pH 7.8, 20 mM EDTA, pH 8.0, 2% BSA). After RNA/DNA hybrid tagmentation, nuclei were spun down at 800g, 4°C, 5 min, and washed twice with 200 μl of ice-cold 0.5× DPBS-0.5%BSA. Then resuspended in 50 μl of reaction mix containing 0.5 mM dNTP, 8 U/μl Maxima H minus reverse transcriptase, 2 U/μl Thermolabile Exonuclease I (NEB), 50 mM Tris-HCl, pH 8.0, 75 mM sodium chloride, 3 mM magnesium chloride, and 10 mM dithiothreitol. EXO I digestion and gap fill-in reaction was done on a thermomixer at 800 rpm, 37 °C, 15 min.

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: embryoid body

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: ATAC

characteristic: protocol

text: Mus musculus

text: FACS

characteristic: single cell isolation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Shenzhen Key Laboratory of Gene Regulation and Systems Biology Department of Biology School of Life Sciences Southern University of Science and Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11264:E14_Protector_30C_FACS_ATAC

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: normal

text: wild type genotype

text: adherent culture

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inner cell mass

text: ATAC

text: Mus musculus

text: FACS

unit: Celsius

characteristic: temperature

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-11264:E14_Protector_37C_FACS_ATAC

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: adherent culture

text: Mus musculus

text: Mus musculus

text: inner cell mass

text: ATAC

text: Mus musculus

text: FACS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: adherent culture

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: ATAC

characteristic: protocol

text: Mus musculus

text: FACS

characteristic: single cell isolation


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: B cell

text: human

text: adult

text: normal

text: wild type genotype

text: adherent culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: ATAC

text: Homo sapiens

text: Droplet

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: embryoid body

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: ATAC

text: Homo sapiens

text: FACS


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: B cell

text: human

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: adherent culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: ATAC

characteristic: protocol

text: Homo sapiens

text: Droplet

characteristic: single cell isolation


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: B cell

text: human

text: adult

text: chronic myelogenous leukemia

text: wild type genotype

text: adherent culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: ATAC

text: Homo sapiens

text: FACS

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neural cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: in vivo

text: Mus musculus

text: Mus musculus

text: cerebral cortex

text: ATAC

text: Mus musculus

text: Droplet


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: neural cell

text: house mouse

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: in vivo

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: cerebral cortex

characteristic: organism part

text: ATAC

characteristic: protocol

text: Mus musculus

text: FACS


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11264:Mix_HEK293T_NIH3T3_FACS_ATAC

text: ArrayExpress

characteristic: cell line

text: renal cell

text: human

text: embryo

text: normal

text: wild type genotype

text: coculture with NIH3T3

text: Homo sapiens

text: Homo sapiens

text: kidney

text: ATAC

text: Homo sapiens

text: FACS

characteristic: single cell isolation


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryo

text: normal

text: wild type genotype

text: embryoid body

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inner cell mass

text: RNA

text: Mus musculus

text: FACS

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: adherent culture

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: RNA

characteristic: protocol

text: Mus musculus

text: FACS

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: cell line

text: B cell

text: human

text: adult

text: normal

text: wild type genotype

text: adherent culture

text: Homo sapiens

text: Homo sapiens

text: blood

text: RNA

text: Homo sapiens

text: Droplet

characteristic: single cell isolation


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: embryoid body

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: inner cell mass

text: RNA

text: Homo sapiens

text: FACS

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: B cell

text: human

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: adherent culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: RNA

characteristic: protocol

text: Homo sapiens

text: Droplet


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: cell line

text: B cell

text: human

text: adult

text: chronic myelogenous leukemia

text: wild type genotype

text: adherent culture

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: RNA

text: Homo sapiens

text: FACS

characteristic: single cell isolation


text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neural cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: in vivo

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebral cortex

text: RNA

text: Mus musculus

text: Droplet

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: neural cell

text: house mouse

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: in vivo

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: cerebral cortex

characteristic: organism part

text: RNA

characteristic: protocol

text: Mus musculus

text: FACS


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11264:Mix_HEK293T_NIH3T3_FACS_RNA

text: ArrayExpress

characteristic: cell line

text: renal cell

text: human

text: embryo

text: normal

text: wild type genotype

text: coculture with NIH3T3

text: Homo sapiens

text: Homo sapiens

text: kidney

text: RNA

text: Homo sapiens

text: FACS

characteristic: single cell isolation


text: public

characteristic: INSDC status

tag: Namespace:Department of Pathology,the First Affiliated Hospital of Soochow University

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: oxaliplatin and capecitabine combined chemotherapy

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Human CRC tissues were harvested by surgery. Tissues containing 1 x 106 cells were stored in 1 mL TRIZOL (Thermo Fisher Scientific) and ground in liquid nitrogen. Next, 100 μL chloroform was added, and the cells were fully mixed and centrifuged at the highest speed at 4 °C for 10 min. The supernatant was transferred into a new tube, isopropanol was added to the same volume, and cells were centrifuged at the highest speed at 4 °C for 10 min. The precipitate was washed with 75% cold ethanol and dissolved in DEPC water. The concentration and quality of RNA were measured using a Nanodrop 2000 (Thermo Fisher Scientific) and an Agilent Bioanalyzer 2100 (Agilent, USA). A total of 2 μg of RNA from each group was used for library preparation using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, USA) following the manufacturer’s instructions

characteristic: description

text: adult

text: colorectal cancer

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: chemo-sensitive

characteristic: response to treatment

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Pathology,the First Affiliated Hospital of Soochow University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: colorectal cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: chemo-sensitive

text: Homo sapiens

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

text: adult

text: colorectal cancer

text: Homo sapiens

text: Homo sapiens

text: colon

text: chemo-resistant

text: Homo sapiens

text: male


text: public

tag: Namespace:Public Health Authority of the Slovak Republic

text: Science Park of Comenius University of Bratislava

text: Public Health Authority of the Slovak Republic, Trnavská cesta 52, 826 45 Bratislava, Slovakia

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Authority of the Slovak Republic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2


text: public

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: RNA

text: Nasopharyngeal swab

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 012

text: Tree of Life Programme

characteristic: INSDC center name

text: public

tag: Namespace:Tree of Life Programme

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

text: Greece

unit: m

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: TESTIS

characteristic: organism part

characteristic: project name

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 012

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: WHOLE ORGANISM

text: ToL

text: Silurus aristotelis

text: FEMALE

text: ERGA IB GR 01

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 011

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 01

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: BRAIN

characteristic: sample derived from

text: Silurus aristotelis

text: FEMALE

text: ERGA IB GR 01

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 01

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: HEART

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: FEMALE

characteristic: sex

text: ERGA IB GR 01

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 01

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: KIDNEY

characteristic: sample derived from

text: Silurus aristotelis

text: FEMALE

text: ERGA IB GR 01

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 01

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: MUSCLE

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: FEMALE

characteristic: sex

text: ERGA IB GR 01

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 01

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: LIVER

characteristic: sample derived from

text: Silurus aristotelis

text: FEMALE

text: ERGA IB GR 01

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 01

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: GILL ANIMAL

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: FEMALE

characteristic: sex

text: ERGA IB GR 01

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 01

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: OVARY ANIMAL

characteristic: sample derived from

text: Silurus aristotelis

text: FEMALE

text: ERGA IB GR 01

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 011

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: BRAIN

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 011

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 011

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: HEART

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

text: ERGA IB GR 011

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 011

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: KIDNEY

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 011

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 011

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: MUSCLE

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

text: ERGA IB GR 011

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 011

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: LIVER

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 011

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 011

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: GILL ANIMAL

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

text: ERGA IB GR 011

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 011

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: TESTIS

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 011

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 012

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: BRAIN

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

text: ERGA IB GR 012

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 012

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: HEART

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 012

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 012

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: KIDNEY

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

text: ERGA IB GR 012

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 012

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: MUSCLE

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 012

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: ERGA IB GR 012

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ioannis Leonardos

characteristic: collected by

text: University of Ioannina

characteristic: collecting institution

characteristic: collection date

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 480 m

characteristic: geographic location (elevation)

text: not collected

text: not collected

text: Ioannina Lake

text: bottom

text: Ioannins Leonardos

text: University of Ioannina

text: adult

text: Silurus aristotelis

text: LIVER

characteristic: sample derived from

text: Silurus aristotelis

text: MALE

text: ERGA IB GR 012

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sanger Institute

text: ERGA IB GR 012

text: Tree of Life Programme

text: public

text: Ioannis Leonardos

text: University of Ioannina

text: Greece

text: 480 m

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Ioannina Lake

characteristic: geographic location (region and locality)

text: bottom

characteristic: habitat

text: Ioannins Leonardos

characteristic: identified by

text: University of Ioannina

text: adult

characteristic: lifestage

text: Silurus aristotelis

characteristic: organism

text: GILL ANIMAL

characteristic: organism part

characteristic: project name

text: Silurus aristotelis

text: MALE

characteristic: sex

text: ERGA IB GR 012

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

characteristic: Submitter Id

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: organism

characteristic: title


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

text: diseased

text: Homo sapiens

text: male

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male

text: host subject id

characteristic: organism

text: PCR tiled amplicon WGS of SARS-Cov-2, monitoring random samples from active surveillance / active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

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