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characteristic: INSDC center name

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text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-36116514/2022

characteristic: organism

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

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characteristic: External Id

text: ETH ZURICH D-BSSE

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tag: Namespace:ETH ZURICH D-BSSE

text: SIB

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

characteristic: collecting institution

characteristic: collection date

text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

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text: Homo sapiens

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text: restricted access

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text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-ETHZ-36090152/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

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characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

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characteristic: organism

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text: SIB

characteristic: collecting institution

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text: restricted access

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characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

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text: hCoV-19/Switzerland/BL-ETHZ-36112837/2022

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text: SC

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characteristic: INSDC status

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text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

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text: SC

characteristic: INSDC center name

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text: public

text: SC

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

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text: not provided

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text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

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text: not provided

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text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

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text: Switzerland

text: BL

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-36119113/2022

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text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

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text: Human

text: not provided

text: not provided

text: not provided


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

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text: Switzerland

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text: restricted access

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text: hCoV-19/Switzerland/BL-ETHZ-36115140/2022

characteristic: organism

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text: ETH ZURICH D-BSSE

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text: restricted access

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text: hCoV-19/Switzerland/BL-ETHZ-36113002/2022


characteristic: ENA-CHECKLIST

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characteristic: organism

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text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

text: Switzerland

characteristic: geographic location (country and/or sea)

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text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/BL-ETHZ-36112731/2022


text: SC

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: Submitter Id

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text: Health Services Laboratories

text: not provided

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

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text: not provided

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text: not provided

characteristic: isolate

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characteristic: ENA-CHECKLIST

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characteristic: External Id

characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

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characteristic: broker name

characteristic: collecting institution

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text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

characteristic: collector name

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-36112778/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

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text: SC

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

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text: Human

text: not provided

text: not provided

text: not provided

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

characteristic: broker name

text: Integrated Covid Hub North East

text: not provided

text: Samples prepared at Integrated Covid Hub North East by Integrated Covid Hub North East and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

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text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

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text: Switzerland

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-36111092/2022

characteristic: organism

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text: ETH ZURICH D-BSSE

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characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

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text: Homo sapiens

text: restricted access

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text: hCoV-19/Switzerland/BS-ETHZ-36117827/2022


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

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text: SIB

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text: restricted access

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characteristic: isolate

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characteristic: SRA accession

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text: Switzerland

text: FR

text: Human

text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/FR-ETHZ-36028941/2022

characteristic: organism

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characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

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text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (region and locality)

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characteristic: host common name

text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/GE-ETHZ-36103894/2022


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characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Alderley Park

text: not provided

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

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text: not provided

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text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

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characteristic: SRA accession

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text: SIB

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characteristic: collection date

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text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-ETHZ-36102166/2022

characteristic: organism

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characteristic: ENA-CHECKLIST

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characteristic: External Id

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characteristic: INSDC status

text: SIB

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text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/GE-ETHZ-36105666/2022


characteristic: GISAID Accession ID

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text: SIB

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text: LU

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text: restricted access

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characteristic: host scientific name

text: restricted access

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text: hCoV-19/Switzerland/LU-ETHZ-36118477/2022

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text: restricted access

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characteristic: organism

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text: ETH ZURICH D-BSSE

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text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

text: Switzerland

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text: restricted access

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text: restricted access

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text: restricted access

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characteristic: organism

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text: Switzerland

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text: restricted access

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text: hCoV-19/Switzerland/SH-ETHZ-36087548/2022

characteristic: organism

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text: restricted access

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characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

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text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

characteristic: collector name

text: Switzerland

text: VS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ETHZ-36022494/2022

characteristic: organism

characteristic: title


text: John Innes Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:John Innes Centre

text: bread wheat

characteristic: common name

text: Tilling mutant Cadenza1290 was backcrossed to Cadenza. Lines with wild-type inflorescences phenotype were bulked.

characteristic: description

text: Triticum aestivum

text: Triticum aestivum


text: John Innes Centre

text: public

characteristic: SRA accession

text: bread wheat

text: Tilling mutant Cadenza1290 was backcrossed to Cadenza. Lines with mutant homozygous inflorescences phenotype, i.e. paired spikelets and curled leaves, were bulked

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-CHECKLIST

text: John Innes Centre

text: public

text: bread wheat

text: Tilling mutant Cadenza1290 was backcrossed to Cadenza. Lines with mutant heterozygous inflorescences phenotype,i.e. paired spikelets and normal leaves , were bulked

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

text: John Innes Centre

text: public

text: bread wheat

text: Tilling mutant Cadenza1761 was backcrossed to Cadenza. Lines with wild-type inflorescences phenotype were bulked.

text: Triticum aestivum

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

text: John Innes Centre

text: public

text: bread wheat

text: Tilling mutant Cadenza1761 was backcrossed to Cadenza. Lines with mutant inflorescences phenotype, i.e. paired spikelets, were bulked.

text: Triticum aestivum

text: Triticum aestivum


characteristic: External Id

text: John Innes Centre

text: public

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is wild type phenotype, replicate 1.

text: glume primordium

characteristic: dev stage

text: Triticum aestivum

characteristic: replicate

text: Triticum aestivum

text: inflorescence

characteristic: tissue type


text: John Innes Centre

text: public

characteristic: Submitter Id

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is wild type phenotype, replicate 2.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence


text: John Innes Centre

text: public

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is wild type phenotype, replicate 3.

text: glume primordium

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: inflorescence


text: John Innes Centre

text: public

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is heterozygous phenotype, replicate 1.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence

text: Cadenza1290_heterozygous_rnaseq_replicate1

characteristic: title


text: John Innes Centre

characteristic: INSDC center name

text: public

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is heterozygous phenotype, replicate 2.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence

text: Cadenza1290_heterozygous_rnaseq_replicate2


text: John Innes Centre

characteristic: INSDC first public

text: public

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is heterozygous phenotype, replicate 3.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence

text: Cadenza1290_heterozygous_rnaseq_replicate3


text: John Innes Centre

characteristic: INSDC last update

text: public

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is sick phenotype, replicate 1.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence


text: John Innes Centre

text: public

characteristic: INSDC status

text: bread wheat

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is sick phenotype, replicate 2.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence


text: John Innes Centre

text: public

text: bread wheat

characteristic: common name

text: The species is Triticum aestivum. The accession is Cadenza1290, and the different genotype samples were collected from BC2F3 lines derived from backcrossing Cadenza1290 to Cadenza. Each biological replicate contains RNA from developing inflorescences at the glume primordium stage, that were harvested from the main stem of plants grown under long day photoperiods. Each replicate is a pool of 6 inflorescences. This is sick phenotype, replicate 3.

text: glume primordium

text: Triticum aestivum

text: Triticum aestivum

text: inflorescence


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

text: SIB

characteristic: broker name

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

characteristic: collecting institution

characteristic: collection date

text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

characteristic: collector name

text: Switzerland

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text: Human

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text: Homo sapiens

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text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VS-ETHZ-36028489/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

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text: ETH ZURICH D-BSSE

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text: SIB

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text: Human

text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ETHZ-36023474/2022

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text: ETH ZURICH D-BSSE

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text: Switzerland

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text: hCoV-19/Switzerland/VS-ETHZ-36084575/2022

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text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

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