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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: whole host

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bacterial environment

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characteristic: experiment type

text: cembio

text: 48 h

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: Caenorhabditis elegans

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text: metagenome

text: Illumina MiSeq

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text: cembio frequency screen

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characteristic: INSDC center name

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text: microbial feature

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characteristic: geographic location (longitude)

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text: microbial feature

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text: bacterial environment

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characteristic: experiment type

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text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: roundworm

text: Caenorhabditis elegans

text: host-associated

text: metagenome

text: PCR

text: gel purification

text: TCGACGAG

text: GGAGACTA

text: metagenome

characteristic: organism

text: 314 F

text: 806 R

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: cembio frequency screen

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: project name

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text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cembio frequency screen


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZOOLOGICAL INSTITUTE KIEL

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

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characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bacterial environment

characteristic: environment (material)

text: lawns

characteristic: experiment type

text: cembio

text: 96 h

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: roundworm

text: Caenorhabditis elegans

text: host-associated

text: metagenome

text: PCR

text: gel purification

text: TCGACGAG

text: GTCGTAGT

text: metagenome

characteristic: organism

text: 314 F

text: 806 R

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: cembio frequency screen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZOOLOGICAL INSTITUTE KIEL

characteristic: INSDC center name

text: public

text: whole host

text: microbial feature

text: bacterial environment

text: lawns

text: cembio

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characteristic: host common name

text: Caenorhabditis elegans

characteristic: host scientific name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: library construction method

text: gel purification

characteristic: library screening strategy

text: TCGACGAG

characteristic: multiplex identifiers-fwd

text: TAGCAGAC

characteristic: multiplex identifiers-rev

characteristic: nucleic acid amplification

text: metagenome

text: 314 F

characteristic: pcr primers fwd

text: 806 R

characteristic: pcr primers rev

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cembio frequency screen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZOOLOGICAL INSTITUTE KIEL

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: whole host

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bacterial environment

characteristic: environment (material)

text: lawns

characteristic: experiment type

text: cembio

text: 0 h

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: roundworm

text: Caenorhabditis elegans

text: host-associated

text: metagenome

text: PCR

text: gel purification

text: TCGACGAG

text: TCATAGAC

text: metagenome

characteristic: organism

text: 314 F

text: 806 R

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: cembio frequency screen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZOOLOGICAL INSTITUTE KIEL

characteristic: INSDC center name

text: public

text: whole host

text: microbial feature

text: bacterial environment

text: ctrl

text: 0 h

text: Germany

text: roundworm

characteristic: host common name

text: Caenorhabditis elegans

characteristic: host scientific name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: library construction method

text: gel purification

characteristic: library screening strategy

text: TCGACGAG

characteristic: multiplex identifiers-fwd

text: TCGCTATA

characteristic: multiplex identifiers-rev

characteristic: nucleic acid amplification

text: metagenome

text: 314 F

characteristic: pcr primers fwd

text: 806 R

characteristic: pcr primers rev

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: cembio frequency screen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZOOLOGICAL INSTITUTE KIEL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mock community

characteristic: description

text: whole host

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bacterial environment

characteristic: environment (material)

text: mock

characteristic: experiment type

text: mock

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: roundworm

text: Caenorhabditis elegans

text: host-associated

text: metagenome

text: PCR

text: gel purification

text: GATCGTGT

text: AACTCTCG

text: metagenome

characteristic: organism

text: 314 F

text: 806 R

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: cembio frequency screen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC center name

text: public

tag: Namespace:HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: house mouse

characteristic: common name

text: Uninfected

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: tissue type

text: Bulk RNAseq uninfected-1-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Uninfected

characteristic: description

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq uninfected-1-R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq uninfected-2-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq uninfected-2-R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq uninfected-3-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq uninfected-3-R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: S. aureus infected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq infected-1-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: S. aureus infected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq infected-1-R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: S. aureus infected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq infected-2-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: S. aureus infected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq infected-2-R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: S. aureus infected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq infected-3-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: S. aureus infected

text: Mus musculus

text: Mus musculus

text: Spleen

text: Bulk RNAseq infected-3-R2


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected CD11b+ cells

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

text: Single cell-RNAseq uninfected-2-S2-R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected CD11b+ cells

text: Mus musculus

text: Mus musculus

text: Spleen

text: Single cell-RNAseq uninfected-2-S2-R2

characteristic: title


characteristic: ENA-CHECKLIST

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected CD11b+ cells

text: Mus musculus

text: Mus musculus

text: Spleen

text: Single cell-RNAseq uninfected-3-S3-R1


characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Uninfected CD11b+ cells

text: Mus musculus

text: Mus musculus

text: Spleen

text: Single cell-RNAseq uninfected-3-S3-R2


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Medical University of Vienna, Department of Medicine I

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: myeloblast

characteristic: cell type

text: human

text: Protocols: Kasumi-1 cells were grown in RPMI1640 supplemented with 20% fetal calf serum until RNA extraction Total RNA was prepared using Trizol NEBNext rRNA Depletion Kit and NEBNEXT Ultra II Direction RNA Library Prep Kit for Illumina

text: acute myeloblastic leukemia with maturation

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: RUNX1-ETO knockdown by AML-ETO shRNA

characteristic: rna interference

text: Homo sapiens


characteristic: External Id

text: Medical University of Vienna, Department of Medicine I

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: myeloblast

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: blood

text: RUNX1-ETO knockdown by AML-ETO shRNA

text: Homo sapiens


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: myeloblast

text: human

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: control shRNA

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: myeloblast

text: human

text: Protocols: 25 million Kasumi-1 cells were collected 48h after lentiviral transduction for RUNX1-ETO knockdown. 25 million Kasumi-1 cells were collected 48h after lentiviral transduction for RUNX1-ETO knockdown and resuspended in cold swelling buffer followed by Dounce homogenization. Cells were centrifuged and washed with lysis buffer. Nuclei were centrifuged and washed again with lysis buffer followed by freezing buffer and stored at -80°C. Nuclear run-on (NRO) assays were performed with 2 biotin-11-NTPs (biotin-11-CTP and biotin-11-UTP, Jena Bioscience) as described in D. B. Mahat and colleagues (Nat Protoc, 2016). Briefly, nuclei were thawed on ice while the NRO mix was pre-equilibrated at 30°C. NRO was performed at 30°C, terminated with the addition of Trizol-LS (Ambion) and followed by RNA nuclear extraction. Nuclear RNA was fragmented by base hydrolysis and enriched for biotin-labelled RNA with Streptavidin beads (Dynabeads M280 Streptavidin, InVitrogen). Nascent biotinylated RNA was ligated with 3’-VRA RNA adaptor (5’Phos-GAUCGUCGGACUGUAGAACUCUGAAC-3’invdT). Ligated RNA was purified by a second round of Streptavidin beads enrichment and ligated with 5’-VRA RNA adaptor (5’-CCUUGGCACCCGAGAAUUCCA-3’). Ligated RNA was purified by a third round of Streptavidin beads enrichment followed by a reverse transcription step using SuperScript III First-strand synthesis (Invitrogen). TruSeq small RNA kit

text: Homo sapiens

text: Homo sapiens

text: blood

text: RUNX1-ETO knockdown by AML-ETO shRNA

text: Homo sapiens

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: myeloblast

characteristic: cell type

text: human

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: control shRNA

text: Homo sapiens


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: myeloblast

text: human

text: Protocols: 105 cells were washed once in 50μl PBS and resuspended in a transposase reaction mix containing 12.5 μl 2 × TD buffer, 2 μl transposase (Illumina), 10.5 μl nuclease-free water and 0.01% NP-40. Tagmentation was performed for 30 min at 37 °C. The optimum number of amplification cycles was estimated by qPCR reaction. Fragments larger than 1,200 bp were excluded by SPRI size selection. DNA concentration was measured using a Qubit fluorometer (Life Technologies). Libraries were amplified using custom Nextera primers. Nextera DNA Library Prep Kit

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: RUNX1-ETO knockdown by AML-ETO shRNA

characteristic: rna interference

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: myeloblast

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: blood

text: control shRNA

text: Homo sapiens


NCCIT-R-DE

text: public

characteristic: SRA accession

text: NCCIT-R-DE

tag: Namespace:Erasmus University Medical Center, Cancer Institute, Josephine Nefkens Building, Rotterdam

characteristic: Submitter Id

text: human

text: Germ Cell Cancer Cell Line

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: NCCIT-R(Ger)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Erasmus University Medical Center, Cancer Institute, Josephine Nefkens Building, Rotterdam

text: public

text: human

text: Germ Cell Cancer Cell Line

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: GISAID Accession ID

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

tag: Namespace:ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specific multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Nieuwendijk

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Netherlands/Nieuwendijk_1363582/2020

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: ReCoDID COVID-19 pilot study

characteristic: project name

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: sample derived from

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: ZuidHolland

text: Human

text: Homo sapiens

text: not provided

text: restricted access

characteristic: organism

text: ReCoDID COVID-19 pilot study


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Sphingobacterium multivorum

text: Sphingobacterium multivorum

text: BIGb0170 Illumina MiSeq reads

characteristic: title


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Sphingobacterium multivorum

text: Sphingobacterium multivorum

text: BIGb0170 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Comamonas piscis

text: Comamonas piscis

text: BIGb0172 Illumina MiSeq reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Comamonas piscis

text: Comamonas piscis

text: BIGb0172 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Pantoea sp. BIGb0393

text: Pantoea sp. BIGb0393

text: BIGb0393 Illumina MiSeq reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Pantoea sp. BIGb0393

text: Pantoea sp. BIGb0393

text: BIGb0393 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Enterobacter cloacae

text: Enterobacter cloacae

text: CEent1 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Sphingomonas molluscorum

text: Sphingomonas molluscorum

text: JUb134 Illumina MiSeq reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Sphingomonas molluscorum

text: Sphingomonas molluscorum

text: JUb134 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Stenotrophomonas indicatrix

text: Stenotrophomonas indicatrix

text: JUb19 Illumina MiSeq reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Stenotrophomonas indicatrix

text: Stenotrophomonas indicatrix

text: JUb19 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Chryseobacterium scophthalmum

text: Chryseobacterium scophthalmum

text: JUb44 Illumina MiSeq reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Chryseobacterium scophthalmum

text: Chryseobacterium scophthalmum

text: JUb44 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Lelliottia amnigena

text: Lelliottia amnigena

text: JUb66 Illumina MiSeq reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Lelliottia amnigena

text: Lelliottia amnigena

text: JUb66 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Pseudomonas mendocina

text: Pseudomonas mendocina

text: MSPm1 Pacbio SMRT reads


text: ZOOLOGICAL INSTITUTE KIEL

text: public

text: CeMbio bacteria whole genome sequencing

text: Acinetobacter guillouiae

text: Acinetobacter guillouiae

text: MYb10 Pacbio SMRT reads


characteristic: GISAID Accession ID

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: ReCoDID COVID-19 pilot study

characteristic: project name

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

text: ZuidHolland

characteristic: geographic location (region and locality)

text: Human

text: Homo sapiens

text: not provided

text: restricted access

text: ReCoDID COVID-19 pilot study

characteristic: sample capture status

characteristic: sample derived from


text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: public

tag: Namespace:NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: Atlantic salmon

characteristic: common name

text: AquaGenome project sample

characteristic: description

text: Salmo salar

characteristic: organism

text: Salmo salar

characteristic: title


E-MTAB-9281:Sample 13

characteristic: ENA-CHECKLIST

text: ACTREC

text: public

text: E-MTAB-9281:Sample 13

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: The normal tissues and tumor tissues were collected from ACTREC-TMC Total RNA was extracted from tumor tissue and available normal tissue sample using TRIzol reagent Library preparation was performed using SENSE Total RNA-Seq Library Prep Kit from Lexogen (Lexogen Inc). The ribosomal RNA (rRNA) was depleted from Total RNA using RiboCop rRNA Depletion Kit V1.2 (Lexogen Inc). RNA samples are then subjected to reverse transcription and ligation in a single tube employing starter-stopper heterodimer primers. Then the cDNA was enriched for sequencing.

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: Sample 13


E-MTAB-9281:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: normal tissue adjacent to neoplasm

text: Homo sapiens

text: female

text: Sample 1


E-MTAB-9281:Sample 22

characteristic: ENA-CHECKLIST

text: ACTREC

text: public

text: E-MTAB-9281:Sample 22

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 22

characteristic: title


E-MTAB-9281:Sample 8

text: ACTREC

text: public

text: E-MTAB-9281:Sample 8

text: ArrayExpress

characteristic: broker name

text: human

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-9281:Sample 27

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9281:Sample 27

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex

text: Sample 27


E-MTAB-9281:Sample 2

characteristic: ENA-CHECKLIST

text: ACTREC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: normal tissue adjacent to neoplasm

text: Homo sapiens

text: female

text: Sample 2


E-MTAB-9281:Sample 25

text: ACTREC

text: public

text: E-MTAB-9281:Sample 25

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 25

characteristic: title


E-MTAB-9281:Sample 29

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

text: public

text: E-MTAB-9281:Sample 29

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 29


E-MTAB-9281:Sample 7

characteristic: ENA-CHECKLIST

characteristic: External Id

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9281:Sample 7

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex

text: Sample 7


E-MTAB-9281:Sample 12

text: ACTREC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 12

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 12


E-MTAB-9281:Sample 28

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

text: public

text: E-MTAB-9281:Sample 28

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 28

characteristic: title


E-MTAB-9281:Sample 3

characteristic: ENA-CHECKLIST

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9281:Sample 3

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: normal tissue adjacent to neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-9281:Sample 17

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 17

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex

text: Sample 17


E-MTAB-9281:Sample 18

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

text: public

text: E-MTAB-9281:Sample 18

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 18


E-MTAB-9281:Sample 9

characteristic: ENA-CHECKLIST

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9281:Sample 9

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 9

characteristic: title


E-MTAB-9281:Sample 21

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9281:Sample 21

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 21


E-MTAB-9281:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 5

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: normal tissue adjacent to neoplasm

text: Homo sapiens

text: female

characteristic: sex

text: Sample 5


E-MTAB-9281:Sample 14

characteristic: ENA-CHECKLIST

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9281:Sample 14

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 14


E-MTAB-9281:Sample 24

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9281:Sample 24

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 24

characteristic: title


E-MTAB-9281:Sample 26

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

text: public

text: E-MTAB-9281:Sample 26

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 26


E-MTAB-9281:Sample 23

characteristic: ENA-CHECKLIST

characteristic: External Id

text: ACTREC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 23

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex

text: Sample 23


E-MTAB-9281:Sample 10

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9281:Sample 10

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-9281:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

text: public

text: E-MTAB-9281:Sample 4

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: normal tissue adjacent to neoplasm

text: Homo sapiens

text: female

text: Sample 4

characteristic: title


E-MTAB-9281:Sample 6

characteristic: ENA-CHECKLIST

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9281:Sample 6

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-9281:Sample 11

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9281:Sample 11

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex

text: Sample 11


E-MTAB-9281:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ACTREC

text: public

text: E-MTAB-9281:Sample 15

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: neoplasm

text: Homo sapiens

text: female

text: Sample 15