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text: Gallus gallus domesticus from Andhra

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from West Bengal

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Nicobar

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Uttarakhand

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Gujarat

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Vellore

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Punjab

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Assam

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Bihar

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Bali

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from South Celebes, Indonesia

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Sumatra

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Indonesia

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Borneo

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Java

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Sari

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Esfahan

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Zabol

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Zahedan

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Shiraz

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Mashhad

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Yazd

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Mahhad

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Marand

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Isfahan

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Khazak

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Jiangsu

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Jiangxi

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Liaoning

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Northwest Parkistan

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Pakistan

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus bankiva from Java

text: Gallus gallus bankiva

text: Gallus gallus bankiva


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus gallus from Sumatra

text: Gallus gallus gallus

text: Gallus gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus jabouillei from Guangxi

text: Gallus gallus jabouillei

text: Gallus gallus jabouillei


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus jabouillei from Yunnan

text: Gallus gallus jabouillei

text: Gallus gallus jabouillei


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Orissa

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Uttar

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Andhra

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from West Bengal

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Tripura

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Jharkhand

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Bihar

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from New Delhi

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Chattisgarh

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Haryana

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Himachal

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Mizorum

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Uttarakhand

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Kashmir

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus murghi from Meghalaya

text: Gallus gallus murghi

text: Gallus gallus murghi


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus spadiceus from Manipur

text: Gallus gallus spadiceus

text: Gallus gallus spadiceus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus spadiceus from ChaingMai

text: Gallus gallus spadiceus

text: Gallus gallus spadiceus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: Gallus gallus spadiceus from Yunnan

text: Gallus gallus spadiceus

text: Gallus gallus spadiceus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Shandong

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Shanxi

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Tabbowa

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Dematagama

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Thammarat

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Phuket

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Tibet

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Vietnan

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Xinjiang

text: Gallus gallus

text: Gallus gallus


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: chicken

text: Gallus gallus domesticus from Yunnan

text: Gallus gallus

text: Gallus gallus


yptwj

text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: yptwj

text: chicken

text: Gallus gallus domesticus from Yunnan

text: Gallus gallus

text: Gallus gallus


text: public

tag: Namespace:UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

characteristic: collection date

text: 16s amplicon

text: upper airway

characteristic: environment (biome)

text: nasopharynx

characteristic: environment (feature)

text: mucous secretions

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: MUPPITS

text: nasal blow

characteristic: sample collection device or method

text: metagenome

text: NextSeq 500

text: Nasal Blow Samples from Children with Asthma at Baseline and During Respiratory Illness


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 16s amplicon

text: upper airway

text: nasopharynx

text: mucous secretions

text: USA

text: human-associated

text: mimarks-survey

text: metagenome

text: MUPPITS

characteristic: project name

text: nasal blow

text: metagenome

text: NextSeq 500

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

text: ROBERT KOCH INSTITUT

characteristic: INSDC last update

text: public

text: metagenome

characteristic: organism

text: metagenome

text: Formalin-fixed lung tissue from the Charite medical Museum pathology collection

characteristic: title


Mouse forebrain mock treated, CE(-)

text: KYOTO UNIVERSITY

text: public

text: Mouse forebrain mock treated, CE(-)

tag: Namespace:KYOTO UNIVERSITY

text: house mouse

characteristic: common name

text: Current methods to identify RNA modifications with short-read sequencing are laborious and direct RNA sequencing gets proclaimed as the viable alternative. Herein, we harness the selective reactivity of the acrylonitrile towards the Inosine (I) and pseudouridine (Ψ) modifications and developed a chemical probe-based direct RNA sequencing method. We first demonstrated that the chemical probe-induced differential signature profile using nanopore sequencing could facilitate the selective assessment of I and Ψ in the in vitro synthesized RNA. Furthermore, we verified the I and Ψ modification with single-nucleotide resolution using RNA derived from mouse brain without the need for a null dataset using knockouts. Our chemical probe-based nanopore sequencing strategy can be extended to profile multiple RNA modifications on a single RNA and may facilitate the diagnosis of disease-associated epitranscriptome markers by generating a comparative dataset in clinical scenarios.

characteristic: description

text: 3 month old

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

text: ICR

characteristic: strain

text: forebrain

characteristic: tissue type

text: Chemical probe-based Nanopore Sequencing to Selectively Assess the RNA modifications


Mouse forebrain ribominus RNA CE(-)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KYOTO UNIVERSITY

characteristic: INSDC center name

text: public

text: Mouse forebrain ribominus RNA CE(-)

text: house mouse

text: adult (3 months)

text: Mus musculus

text: Mus musculus

text: male

text: ICR

text: forebrain


characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: phenotype

text: Mus musculus

text: LP-J

characteristic: subject id

text: LP-J


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: NZO-HlLtJ

text: NZO-HlLtJ

characteristic: title


text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: University clinic Bonn

text: public

tag: Namespace:University clinic Bonn

text: No

characteristic: host associated

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: External Id

text: University clinic Bonn

characteristic: INSDC center name

text: public

characteristic: collection date

text: Germany

characteristic: country

characteristic: genotype

text: No

text: wastewater

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: University clinic Bonn

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Germany

text: No

text: wastewater

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: University clinic Bonn

text: public

characteristic: Submitter Id

text: Germany

text: No

text: wastewater

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


characteristic: ENA-FIRST-PUBLIC

text: University clinic Bonn

text: public

text: Germany

text: No

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: University clinic Bonn

characteristic: INSDC last update

text: public

text: Germany

text: No

text: wastewater

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: serovar


text: University clinic Bonn

text: public

text: Germany

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa


text: University clinic Bonn

text: public

text: Germany

text: No

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

text: University clinic Bonn

text: public

text: Germany

text: No

text: wastewater

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

text: IPK-Gatersleben

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: India

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12321

characteristic: description

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Puchal

characteristic: geographic location (region and locality)

characteristic: number

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: TRI 12321 ISO


characteristic: External Id

text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: bread wheat

text: Afghanistan

characteristic: country

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 10459

text: Zaman Kut.

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 10459 ISO


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Nepal

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 10883

text: Lakua

text: Triticum aestivum

characteristic: organism

text: leaf

text: Triticum aestivum

text: TRI 10883 ISO

characteristic: title


characteristic: ENA-LAST-UPDATE

text: IPK-Gatersleben

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: Italy

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 13557

characteristic: description

text: Meletto zwischen Bronte und Randazzo

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 13557 ISO


characteristic: External Id

text: IPK-Gatersleben

text: public

text: bread wheat

text: Greece

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 10802

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: number

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: TRI 10802 ISO


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: bread wheat

text: Italy

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 13468

text: sw von Nusco

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 13468 ISO


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Slovakia

characteristic: country

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12012

text: Jalová, Niedere Beskiden

text: Triticum aestivum

characteristic: organism

text: leaf

text: Triticum aestivum

text: TRI 12012 ISO


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: Slovakia

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 13325

characteristic: description

text: Hvozdnica, südwestl. Bytca, Javorniky, Felder an den Hängen des Seitentales westlich des Ortes

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 13325 ISO

characteristic: title


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: bread wheat

text: Italy

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 16585

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Region Apulia, Ceglie

characteristic: number

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: TRI 16585 ISO


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: bread wheat

text: Italy

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 17768

text: Region Emilia-Romagna, Porretta Terme (Bo.)

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 17768 ISO


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Italy

characteristic: country

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 3739

text: Caprioli (Marina), Provinz Salerno, Süditalien

text: Triticum aestivum

characteristic: organism

text: leaf

text: Triticum aestivum

text: TRI 3739 ISO


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: Czechia

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 11234

characteristic: description

text: Hutisko Solanec, Vsetínské Vrchy NW Vel. Karlovice

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 11234 ISO

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

text: bread wheat

text: Greece

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 10758

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: number

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: TRI 10758 ISO


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: bread wheat

text: Austria

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 13628

text: St. Peter am Hartwald, Innviertel, Oberösterreich

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 13628 ISO


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Georgia

characteristic: country

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 15132

text: Triticum aestivum

characteristic: organism

text: leaf

text: Triticum aestivum

text: TRI 15132 ISO


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: Slovakia

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 11228

characteristic: description

text: Matiaska, ONO von Presov

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 11228 ISO

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

text: bread wheat

text: Afghanistan

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 10460

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Zaman Kut.

characteristic: number

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: TRI 10460 ISO


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: bread wheat

text: India

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12407

text: Nactan, E. of Barsheni

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 12407 ISO


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Slovakia

characteristic: country

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12044

text: Starina, Niedere Beskiden

text: Triticum aestivum

characteristic: organism

text: leaf

text: Triticum aestivum

text: TRI 12044 ISO


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: Slovakia

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12037

characteristic: description

text: Starina, Niedere Beskiden

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 12037 ISO

characteristic: title


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: bread wheat

text: India

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12392

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Katrain

characteristic: number

text: Triticum aestivum

text: leaf

characteristic: plant structure

text: Triticum aestivum

text: TRI 12392 ISO


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: bread wheat

text: Slovakia

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 12023

text: Snina, Niedere Beskiden

characteristic: geographic location (region and locality)

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 12023 ISO


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Afghanistan

characteristic: country

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 10493

text: Faizabad bazaar (Aftal)

text: Triticum aestivum

characteristic: organism

text: leaf

text: Triticum aestivum

text: TRI 10493 ISO


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: bio material

text: bread wheat

characteristic: common name

text: Slovakia

text: SSD derived material from a single seed of a single plant belonging to accession GAT:TRI 11288

characteristic: description

text: Ostry Grún, Vtácník-Gebirge

text: Triticum aestivum

text: leaf

text: Triticum aestivum

text: TRI 11288 ISO

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University clinic Bonn

text: public

text: Germany

characteristic: genotype

text: No

characteristic: host associated

text: wastewater

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: University clinic Bonn

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Germany

text: No

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


CdEDTA

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universita degli studi di Milano

characteristic: INSDC last update

text: public

text: CdEDTA

tag: Namespace:Universita degli studi di Milano

text: control 16S profiling

text: bacterium

text: bacterium

text: control 16S profiling


text: Universita degli studi di Milano

text: public

characteristic: Submitter Id

text: control 16S profiling

text: bacterium

characteristic: organism

text: bacterium

text: control 16S profiling


CvEDTA

text: Universita degli studi di Milano

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CvEDTA

text: control 16S profiling

text: bacterium

text: bacterium

text: control 16S profiling


text: Universita degli studi di Milano

text: public

text: Blood 16S profiling

text: bacterium

text: bacterium

text: Blood 16S profiling


OSxC

text: Universita degli studi di Milano

text: public

text: OSxC

text: Blood 16S profiling

text: bacterium

text: bacterium

text: Blood 16S profiling


E-MTAB-10068:Zebrafish mab21l1_1

text: public

text: E-MTAB-10068:Zebrafish mab21l1_1

tag: Namespace:Department of Pediatrics and Cell Biology, Neurobiology and Anatomy, The Medical College of Wisconsin, Milwaukee, WI USA

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: Protocols: Whole eyes were dissected from 5 day post fertilization wild-type or homozygous mab21l1-c.107delA embryos into 1X Ringer's solution. Three biological samples were collected per genotype, and each sample contained 50 eyes. To isolate RNA, whole-eye samples were lysed and homogenized in TRI Reagent. Then, the Direct-zol RNA MiniPrep Kit from ZymoResearch was followed to extract and purify RNA. RNA Samples were submitted to Macrogen for RNA-Seq performance. Macrogen conducted library prep using a TruSeq Stranded mRNA LT Sample Prep Kit following the TruSeq Stranded mRNA Sample Preparation Guide, Part # 15031047 Rev. E.

text: late embryonic stage

characteristic: developmental stage

text: homozygous mab21l1-c.107delA

text: Danio rerio

text: Danio rerio

text: eye

characteristic: organism part

text: Danio rerio

text: Zebrafish mab21l1_1


E-MTAB-10068:Zebrafish mab21l1_2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Pediatrics and Cell Biology, Neurobiology and Anatomy, The Medical College of Wisconsin, Milwaukee, WI USA

text: public

text: E-MTAB-10068:Zebrafish mab21l1_2

text: ArrayExpress

text: zebrafish

characteristic: description

text: late embryonic stage

text: homozygous mab21l1-c.107delA

characteristic: genotype

text: Danio rerio

text: Danio rerio

text: eye

text: Danio rerio

text: Zebrafish mab21l1_2

characteristic: title


E-MTAB-10068:Zebrafish mab21l1_3

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10068:Zebrafish mab21l1_3

text: ArrayExpress

text: zebrafish

text: late embryonic stage

text: homozygous mab21l1-c.107delA

text: Danio rerio

text: Danio rerio

text: eye

text: Danio rerio

text: Zebrafish mab21l1_3


E-MTAB-10068:Zebrafish WT_1

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-10068:Zebrafish WT_1

characteristic: Submitter Id

text: ArrayExpress

text: zebrafish

text: late embryonic stage

text: wild type genotype

text: Danio rerio

text: Danio rerio

text: eye

text: Danio rerio

text: Zebrafish WT_1


E-MTAB-10068:Zebrafish WT_2

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10068:Zebrafish WT_2

text: ArrayExpress

text: zebrafish

text: late embryonic stage

text: wild type genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: eye

text: Danio rerio

text: Zebrafish WT_2


E-MTAB-10068:Zebrafish WT_3

text: public

text: E-MTAB-10068:Zebrafish WT_3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: late embryonic stage

text: wild type genotype

text: Danio rerio

text: Danio rerio

text: eye

text: Danio rerio

text: Zebrafish WT_3


text: mixed

characteristic: ArrayExpress-SEX

text: Caenorhabditis Drosophilae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Caenorhabditis Drosophilae

text: Mixed

characteristic: gender

text: Caenorhabditis drosophilae

text: Caenorhabditis drosophilae

characteristic: subject id


text: mixed

text: Caenorhabditis Uteleia

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Caenorhabditis Uteleia

text: Mixed

text: Caenorhabditis uteleia

text: Caenorhabditis uteleia

characteristic: title


text: mixed

text: Caenorhabditis Zanzibari

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Caenorhabditis Zanzibari

text: Mixed

text: Caenorhabditis zanzibari

text: Caenorhabditis zanzibari


text: mixed

text: Caenorhabditis Afra

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Caenorhabditis Afra

text: Mixed

text: Caenorhabditis afra

text: Caenorhabditis afra


text: WAGENINGEN UR

characteristic: INSDC first public

text: public

tag: Namespace:WAGENINGEN UR

characteristic: description

text: continuous lactate fermentation reactor

characteristic: isolation source

text: metagenome

characteristic: organism

text: metagenome


Inoculum

text: WAGENINGEN UR

text: public

text: Inoculum

text: Inoculum R1&R2

text: continuous lactate fermentation reactor

text: metagenome

text: metagenome

text: Inoculum


R2_period_III_biofilm a

text: WAGENINGEN UR

text: public

text: R2_period_III_biofilm a

text: R2_period_III_biofilm a

text: continuous lactate fermentation reactor

text: metagenome

text: metagenome

text: R2_period_III_biofilm a


R2_period_III_biofilm b

text: WAGENINGEN UR

text: public

text: R2_period_III_biofilm b

text: R2_period_III_biofilm b

text: continuous lactate fermentation reactor

text: metagenome

text: metagenome

text: R2_period_III_biofilm b


R1_period_IIb_biofilm b

text: WAGENINGEN UR

text: public

text: R1_period_IIb_biofilm b

text: R1_period_IIb_biofilm b

text: continuous lactate fermentation reactor

text: metagenome

text: metagenome

text: R1_period_IIb_biofilm b


R1_period_III_biofilm b

text: WAGENINGEN UR

text: public

text: R1_period_III_biofilm b

text: R1_period_III_biofilm b

text: continuous lactate fermentation reactor

text: metagenome

text: metagenome

text: R1_period_III_biofilm b


text: public

tag: Namespace:Centre for Cardiovascular Science, The University of Edinburgh

unit: year

characteristic: age

unit: meter

characteristic: body height

unit: kilogram per square meter

characteristic: body mass index

unit: kilogram

characteristic: body weight

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Human adipose tissue was obtained from the central compartment of the neck, superior to the clavicle and deep to the lateral thyroid lobe either adjacent to the longus colli muscle or to the oesophagus (brown adipose tissue; BAT) and more superficially from the subcutaneous neck tissue (white adipose tissue; WAT). The stromal vascular fraction was isolated and cultured as described (Ramage, Akyol et al. 2016 doi: 10.1016/j.cmet.2016.06.011). Following differentiation, cells were cultured in serum-stripped medium for 48 hours prior to RNA extraction and subsequent bulk RNA-seq. Sample 91 - age (years): 41; sex: female; height (m): 1.52; weight (Kg): 63.5; BMI (kg/m2): 27.48 Sample 92 - age (years): 59; sex: female; height (m): 1.57; weight (Kg): 60.4; BMI (kg/m2): 24.50 Sample 93 - age (years): 52; sex: female; height (m): 1.70; weight (Kg): 114; BMI (kg/m2): 39.45 Sample 95 - age (years): 50; sex: female; height (m): 1.72; weight (Kg): 66; BMI (kg/m2): 22.31 Total RNA samples were assessed on the Agilent Bioanalyser (Agilent Technologies, #G2939AA) with the RNA 6000 Nano Kit (#5067-1511) for quality and integrity of total RNA. Samples were DNase-treated using the TURBO DNA-free™ kit (Thermo Fisher, #AM1907) and then quantified using the Qubit 2.0 Fluorometer (Thermo Fisher Scientific Inc, #Q32866) and the Qubit RNA BR assay kit (#Q10210), and assessed for residual DNA contamination using the Qubit dsDNA HS assay Kit (catalogue # Q32851). Libraries were prepared from each TURBO™ DNase treated total-RNA sample using the TruSeq Stranded Total RNA with Ribo-Zero kit (#RS-122-2201) according to the provided protocol. 100ng of total-RNA was processed to deplete rRNA before being purified, fragmented and primed with random hexamers. Primed RNA fragments were reverse transcribed into first strand cDNA using reverse transcriptase and random primers. RNA templates were removed and a replacement strand synthesised incorporating dUTP in place of dTTP to generate ds cDNA. AMPure XP beads (Beckman Coulter, #A63881) were then used to separate the ds cDNA from the second strand reaction mix, providing blunt-ended cDNA. A single 'A' nucleotide was added to the 3' ends of the blunt fragments to prevent them from ligating to another during the subsequent adapter ligation reaction, and a corresponding single 'T' nucleotide on the 3' end of the adapter provided a complementary overhang for ligating the adapter to the fragment. Multiple indexing adapters were then ligated to the ends of the ds cDNA to prepare them for hybridisation onto a flow cell, before 15 cycles of PCR were used to selectively enrich those DNA fragments that had adapter molecules on both ends and amplify the amount of DNA in the library suitable for sequencing. Libraries were quantified using the Qubit dsDNA HS kit and by PCR using the Kapa Universal Illumina Library Quantification kit complete kit (#KK4824) and assessed for quality using the Agilent Bioanalyser with the DNA HS Kit.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Sample 91

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: brown adipose tissue

characteristic: organism part

text: stromal vascular fraction

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Cardiovascular Science, The University of Edinburgh

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: normal

text: Sample 91

text: Homo sapiens

text: Homo sapiens

text: white adipose tissue

text: stromal vascular fraction

text: Homo sapiens

text: female

characteristic: title


characteristic: INSDC first public

text: public

characteristic: age

characteristic: body height

characteristic: body mass index

characteristic: body weight

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: Sample 92

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brown adipose tissue

text: stromal vascular fraction

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Sample 92

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: white adipose tissue

characteristic: organism part

text: stromal vascular fraction

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: adult

text: normal

text: Sample 93

text: Homo sapiens

text: Homo sapiens

text: brown adipose tissue

text: stromal vascular fraction

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: body height

characteristic: body mass index

characteristic: body weight

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: Sample 93

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: white adipose tissue

text: stromal vascular fraction

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Sample 95

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: brown adipose tissue

characteristic: organism part

text: stromal vascular fraction

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: adult

text: normal

text: Sample 95

text: Homo sapiens

text: Homo sapiens

text: white adipose tissue

text: stromal vascular fraction

text: Homo sapiens

text: female

characteristic: title


E-MTAB-10160:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Miami

text: public

text: E-MTAB-10160:Sample 1

tag: Namespace:University of Miami

text: ArrayExpress

characteristic: broker name

text: Protocols: We enrolled 12 Indian Rhesus Macaques (RM), consisting of 8 old animals (age > 18 years) and 4 young animals (age 3-6 years). Animals were housed and blood/tissue/stool samples were collected at the New Iberia Research Center (NIRC) at the University of Louisiana at Lafayette. Fresh fecal samples were collected from anesthetized animals by insertion of a fecal loop into the rectum and swiping several times and stored at -80°C. No treatments were done. The only variable is age. DNA from the macaque fecal samples was isolated using the Power Soil DNA Isolation Kit (Qiagen) according to manufacturer’s instructions. All samples were quantified using the Qubit® Quant-iT dsDNA High-Sensitivity Kit (Invitrogen, Life Technologies, Grand Island, NY) to ensure that they met minimum concentration and mass of DNA, and were submitted to University of Minnesota Genomics Center for further analysis by Whole Genome Shotgun sequencing (WGS). Shotgun metagenomic library was constructed with the Nextera DNA sample preparation kit (Illumina, San Diego, CA), as per manufacturer’s specification. Barcoding indices were inserted using Nextera indexing kit (illumina). Products were purified using Agencourt AMpure XP kit (Beckman Coulter, Brea, CA) and pooled for sequencing. Samples were sequenced using MiSeq reagent kit V2 (Illumina).Raw sequences were sorted using assigned barcodes and cleaned up before analysis (barcodes removed and sequences above a quality score, Q>30 taken forward for analyses).

characteristic: description

text: Macaca mulatta

characteristic: host species

text: Old 1

text: gut metagenome

characteristic: organism

text: gut metagenome

text: feces

characteristic: organism substance

text: gut metagenome

text: Sample 1


E-MTAB-10160:Sample 10

text: University of Miami

characteristic: INSDC center name

text: public

text: E-MTAB-10160:Sample 10

text: ArrayExpress

text: Macaca mulatta

text: Young 2

characteristic: individual

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 10


E-MTAB-10160:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Miami

text: public

text: E-MTAB-10160:Sample 11

text: ArrayExpress

text: Macaca mulatta

text: Young 3

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 11


E-MTAB-10160:Sample 12

text: University of Miami

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10160:Sample 12

text: ArrayExpress

text: Macaca mulatta

text: Young 4

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 12


E-MTAB-10160:Sample 2

text: University of Miami

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10160:Sample 2

text: ArrayExpress

text: Macaca mulatta

text: Old 2

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 2


E-MTAB-10160:Sample 3

text: University of Miami

text: public

text: E-MTAB-10160:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: Macaca mulatta

text: Old 3

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 3


E-MTAB-10160:Sample 4

characteristic: ENA-LAST-UPDATE

text: University of Miami

text: public

text: E-MTAB-10160:Sample 4

text: ArrayExpress

text: Macaca mulatta

text: Old 4

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 4

characteristic: title


E-MTAB-10160:Sample 5

characteristic: External Id

text: University of Miami

text: public

text: E-MTAB-10160:Sample 5

text: ArrayExpress

characteristic: broker name

text: Macaca mulatta

text: Old 5

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 5


E-MTAB-10160:Sample 6

text: University of Miami

text: public

text: E-MTAB-10160:Sample 6

text: ArrayExpress

characteristic: description

text: Macaca mulatta

characteristic: host species

text: Old 6

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 6


E-MTAB-10160:Sample 7

text: University of Miami

text: public

text: E-MTAB-10160:Sample 7

text: ArrayExpress

text: Macaca mulatta

text: Old 7

text: gut metagenome

characteristic: organism

text: gut metagenome

text: feces

characteristic: organism substance

text: gut metagenome

text: Sample 7


E-MTAB-10160:Sample 8

text: University of Miami

characteristic: INSDC center name

text: public

text: E-MTAB-10160:Sample 8

text: ArrayExpress

text: Macaca mulatta

text: Old 8

characteristic: individual

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 8


E-MTAB-10160:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Miami

text: public

text: E-MTAB-10160:Sample 9

text: ArrayExpress

text: Macaca mulatta

text: Young 1

text: gut metagenome

text: gut metagenome

text: feces

text: gut metagenome

text: Sample 9


characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: collection date

text: I

text: organ

characteristic: environment (biome)

text: organ subunit

characteristic: environment (feature)

text: not available

characteristic: environment (material)

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: cervical cancer

characteristic: gynecological disorder

text: human-vaginal

characteristic: human vaginal environmental package

characteristic: investigation type

text: human metagenome

characteristic: project name

text: human metagenome

text: 16S rRNA sequencing

characteristic: sequencing method

text: pre-treatment

characteristic: treatment status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I

characteristic: description

text: organ

text: organ subunit

text: not available

text: Poland

text: cervical cancer

text: human-vaginal

text: human metagenome

characteristic: organism

text: human metagenome

text: 16S rRNA sequencing

characteristic: title

text: pre-treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: II

text: organ

characteristic: environment (biome)

text: organ subunit

characteristic: environment (feature)

text: not available

characteristic: environment (material)

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: cervical cancer

text: human-vaginal

text: human metagenome

text: human metagenome

text: 16S rRNA sequencing

text: post-treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: III

text: organ

text: organ subunit

text: not available

text: Poland

text: cervical cancer

characteristic: gynecological disorder

text: human-vaginal

characteristic: human vaginal environmental package

characteristic: investigation type

text: human metagenome

characteristic: project name

text: human metagenome

text: 16S rRNA sequencing

characteristic: sequencing method

text: post-treatment 3 months

characteristic: treatment status


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: K

characteristic: description

text: organ

text: organ subunit

text: not available

text: Poland

text: control

text: human-vaginal

text: human metagenome

characteristic: organism

text: human metagenome

text: 16S rRNA sequencing

characteristic: title

text: control


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN VETERINARY INSTITUTE

characteristic: INSDC center name

text: public

text: APEC

text: Norway

characteristic: geographic location

text: Broiler

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


text: Noble Research Institute, LLC

text: public

tag: Namespace:Noble Research Institute, LLC

text: barrel medic

characteristic: common name

text: 360 Mb

characteristic: estimated size

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

text: 34.5531° N

characteristic: geographic location (latitude)

text: 18.0480° E

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Medicago truncatula

text: Medicago truncatula

characteristic: organism common name

characteristic: plant developmental stage

text: half strength of Murashige & Skoog (1/2 110 MS) basal salt solid medium

characteristic: plant growth medium

text: roots

characteristic: plant structure

characteristic: ploidy

text: sexual

characteristic: propagation

text: square Petri dish (120 x 120 mm)

characteristic: rooting conditions

characteristic: rooting medium pH

text: healthy

characteristic: sample health state

text: Medicago truncatula

text: Jemalong A17

characteristic: subspecific genetic lineage rank

text: Wild type-1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Noble Research Institute, LLC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: barrel medic

characteristic: common name

text: 360 Mb

text: Mediterranean Sea

text: 34.5531° N

text: 18.0480° E

text: growth chamber

text: Medicago truncatula

characteristic: organism

text: Medicago truncatula

text: roots

text: sexual

text: square Petri dish (120 x 120 mm)

text: healthy

text: Medicago truncatula

text: Jemalong A17

text: Wild type-2

characteristic: title


text: Noble Research Institute, LLC

text: public

text: barrel medic

text: 360 Mb

characteristic: estimated size

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

text: 34.5531° N

characteristic: geographic location (latitude)

text: 18.0480° E

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: Medicago truncatula

text: Medicago truncatula

characteristic: organism common name

characteristic: plant developmental stage

characteristic: plant growth medium

text: roots

characteristic: plant structure

characteristic: ploidy

text: sexual

characteristic: propagation

text: square Petri dish (120 x 120 mm)

characteristic: rooting conditions

characteristic: rooting medium pH

text: healthy

text: Medicago truncatula

text: Jemalong A17

text: Wild type-3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Noble Research Institute, LLC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: barrel medic

characteristic: common name

text: 360 Mb

text: Mediterranean Sea

text: 34.5531° N

text: 18.0480° E

text: growth chamber

text: Medicago truncatula

text: Medicago truncatula

text: roots

text: sexual

text: square Petri dish (120 x 120 mm)

text: healthy

characteristic: sample health state

text: Medicago truncatula

text: Jemalong A17

characteristic: subspecific genetic lineage rank


text: Tromsoe University Museum

text: public

tag: Namespace:Tromsoe University Museum

text: Klauman

characteristic: collected by

text: terrestrial biome

characteristic: environment (biome)

text: natural environment

characteristic: environment (feature)

text: plant matter

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: genome skimming

characteristic: investigation type

text: herbarium sample

characteristic: isolation and growth condition

text: Cynoglossum officinale

characteristic: organism

text: herbarium sample

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf (PO_0025034)

characteristic: plant structure

text: Cynoglossum officinale

text: Tromsoe herbarium specimen TROM_V_173327

characteristic: source material identifiers

text: TROM_V_173327 herbarium sample of Cynoglossum officinale

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Tromsoe University Museum

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loken, Astri

characteristic: collection date

text: terrestrial biome

text: natural environment

text: plant matter

text: Norway

text: genome skimming

text: herbarium sample

text: Braya linearis

text: herbarium sample

text: soil

text: leaf (PO_0025034)

text: Braya linearis

text: Tromsoe herbarium specimen TROM_V_81132

text: TROM_V_81132 herbarium sample of Braya linearis


text: Tromsoe University Museum

text: public

text: Alm, Torbjorn; Gamst, Unni Bjerke

characteristic: collected by

text: terrestrial biome

characteristic: environment (biome)

text: natural environment

characteristic: environment (feature)

text: plant matter

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: genome skimming

characteristic: investigation type

text: herbarium sample

characteristic: isolation and growth condition

text: Acorus calamus

characteristic: organism

text: herbarium sample

text: soil

text: leaf (PO_0025034)

text: Acorus calamus

text: Tromsoe herbarium specimen TROM_V_962500

text: TROM_V_962500 herbarium sample of Acorus calamus


E-MTAB-10191:Control 701

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:Control 701

tag: Namespace:Department of Pharmacology and Pharmacotherapy, Semmelweis University

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: Protocols: At week 25 of the diet, animals were anesthetized with pentobarbital (60 mg/kg, i.p.), then hearts were excised, shortly perfused with oxygenated Krebs-Henseleit buffer in Langendorff mode and stored at -80°C in RNAlater. 7‐week‐old, male, Long Evans rats were randomly divided into two groups: control (CON) and high fat, high-sucrose diet group (HFD). The CON group was fed a control rat chow, whereas the HFD group was fed a chow supplemented with 20% lard and 15% sucrose as an HFD diet. From week 16, groups of animals were further randomized in two sub-groups and injected s.c. with 0.25 mg·kg-1 selegiline (CON + S and HFD + S) or vehicle (CON, HFD) once daily. Total RNA from left ventricular tissue samples were extracted with a precipitation method. Briefly, RNAzol® RT (Sigma, USA) was added to each sample and homogenized with TissueLyser (Qiagen, Germany). Homogenates were centrifuged, and DNA and protein were precipitated with nuclease‐free water. Furthermore, 4‐bromoanisole (Sigma), phase separation step was incorporated to maximize the DNA elimination. Total RNA was precipitated with isopropanol (vWR, USA), and pellet was washed twice with ethanol (vWR, USA). Finally, total RNA was resuspended in nuclease‐free water. RNA concentrations were measured with NanoDrop (Thermo Scientific, Waltham, USA). For small RNA library construction, the NEBNext Multiplex Small RNA Library Prep Set for Illumina (New England Biolabs, Ipswich, MA, USA) was applied according to the manufacturer’s protocol. The quality and quantity of the library QC was performed by using the High Sensitivity DNA1000 ScreenTape system with 2200 Tapestation (Agilent Technologies, Santa Clara, CA, USA) and dsDNA HS Assay Kit with Qubit 3.0 Fluorometer (Thermo Fisher Scientific, Waltham, MA, USA), respectively.

characteristic: description

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Long-Evans

characteristic: strain

text: Control 701

characteristic: title


E-MTAB-10191:Control 704

tag: attribute

characteristic: ENA-CHECKLIST

text: Department of Pharmacology and Pharmacotherapy, Semmelweis University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10191:Control 704

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: standard diet

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: Control 704


E-MTAB-10191:Control 709

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:Control 709

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: adult

text: standard diet

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: Control 709


E-MTAB-10191:Control 711

text: public

text: E-MTAB-10191:Control 711

text: ArrayExpress

text: Norway rat

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Long-Evans

text: Control 711


E-MTAB-10191:Control 717

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10191:Control 717

text: ArrayExpress

text: Norway rat

text: adult

text: standard diet

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

characteristic: strain

text: Control 717

characteristic: title


E-MTAB-10191:Control+Selegiline 719

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:Control+Selegiline 719

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: adult

text: standard diet

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: Control+Selegiline 719


E-MTAB-10191:Control+Selegiline 725

text: public

text: E-MTAB-10191:Control+Selegiline 725

text: ArrayExpress

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: Control+Selegiline 725


E-MTAB-10191:Control+Selegiline 727

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10191:Control+Selegiline 727

text: ArrayExpress

text: Norway rat

text: adult

text: standard diet

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Long-Evans

text: Control+Selegiline 727


E-MTAB-10191:Control+Selegiline 733

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:Control+Selegiline 733

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: standard diet

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

characteristic: strain

text: Control+Selegiline 733

characteristic: title


E-MTAB-10191:Control+Selegiline 735

text: public

text: E-MTAB-10191:Control+Selegiline 735

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: Control+Selegiline 735


E-MTAB-10191:HFD 708

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10191:HFD 708

text: ArrayExpress

text: Norway rat

text: adult

text: high fat, high sucrose diet

text: obesity

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: HFD 708


E-MTAB-10191:HFD 724

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:HFD 724

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: high fat, high sucrose diet

text: obesity

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Long-Evans

text: HFD 724


E-MTAB-10191:HFD 738

text: public

text: E-MTAB-10191:HFD 738

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: high fat, high sucrose diet

characteristic: diet

text: obesity

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

characteristic: strain

text: HFD 738

characteristic: title


E-MTAB-10191:HFD 740

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10191:HFD 740

text: ArrayExpress

text: Norway rat

text: adult

text: high fat, high sucrose diet

text: obesity

characteristic: disease

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: HFD 740


E-MTAB-10191:HFD+Selegiline 714

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:HFD+Selegiline 714

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: high fat, high sucrose diet

text: obesity

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: HFD+Selegiline 714


E-MTAB-10191:HFD+Selegiline 716

text: public

text: E-MTAB-10191:HFD+Selegiline 716

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: high fat, high sucrose diet

characteristic: diet

text: obesity

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Long-Evans

text: HFD+Selegiline 716


E-MTAB-10191:HFD+Selegiline 722

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10191:HFD+Selegiline 722

text: ArrayExpress

text: Norway rat

text: adult

text: high fat, high sucrose diet

text: obesity

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

characteristic: strain

text: HFD+Selegiline 722

characteristic: title


E-MTAB-10191:HFD+Selegiline 730

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10191:HFD+Selegiline 730

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: high fat, high sucrose diet

text: obesity

characteristic: disease

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: HFD+Selegiline 730


E-MTAB-10191:HFD+Selegiline 731

text: public

text: E-MTAB-10191:HFD+Selegiline 731

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: high fat, high sucrose diet

characteristic: diet

text: obesity

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: left ventricle myocardium

text: Rattus norvegicus

text: male

text: Long-Evans

text: HFD+Selegiline 731


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Bioinformatics Core Facility The University of Manchester

unit: week

characteristic: age

text: ArrayExpress

text: lymphocyte

characteristic: cell type

text: house mouse

text: Protocols: A total of 13 Kaede B6 females (aged between 7-9 week old at tumour injection, and 9-11 week old when tumours were photo converted) were subcutaeneously injected 2.5x 10^5 MC38 cells in the flank and photo converted on D11. 24 and 72 hrs after photo conversion 4 tumours were collected for each time point. FACS sorted lymphocytes were isolated from tumors of transgenic mice. Used 10X sample collection protocol, detailed in CG000183_ChromiumSingleCell3__v3_UG_Rev-A Used 10X sample collection protocol, detailed in CG000183_ChromiumSingleCell3__v3_UG_Rev-A

text: adult

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: flank

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 Kaede

text: infection of 2.5x 10^5 MC38 into flank

characteristic: treatment