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text: Irish Consortium for Sequencing Covid

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characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Monaghan

characteristic: geographic location (region and locality)

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text: National Virus Reference Laboratory

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

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text: Europe / Ireland / Monaghan

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text: Severe acute respiratory syndrome coronavirus 2

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characteristic: ENA-FIRST-PUBLIC

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text: NVRL

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characteristic: common name

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text: Homo sapiens

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text: hCoV-19/Ireland/MN-NVRL-S22IRL00017957/2022


characteristic: ENA-FIRST-PUBLIC

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text: NVRL

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characteristic: ENA-FIRST-PUBLIC

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text: hCoV-19/Ireland/MN-NVRL-S22IRL00019120/2022


characteristic: ENA-FIRST-PUBLIC

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text: hCoV-19/Ireland/TA-NVRL-S22IRL00020372/2022


characteristic: ENA-FIRST-PUBLIC

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text: Europe / Ireland / Tipperary

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

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text: hCoV-19/Ireland/TA-NVRL-S22IRL00018503/2022


characteristic: ENA-FIRST-PUBLIC

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characteristic: ENA-FIRST-PUBLIC

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text: NVRL

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text: hCoV-19/Ireland/TA-NVRL-S22IRL00018499/2022


characteristic: ENA-FIRST-PUBLIC

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text: NVRL

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characteristic: ENA-FIRST-PUBLIC

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text: NVRL

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text: hCoV-19/Ireland/TA-NVRL-S22IRL00018471/2022


characteristic: ENA-FIRST-PUBLIC

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text: NVRL

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characteristic: geographic location (country and/or sea)

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text: hCoV-19/Ireland/TA-NVRL-S22IRL00018478/2022


characteristic: ENA-FIRST-PUBLIC

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characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018464/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018531/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018480/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018483/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018527/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018465/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018473/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018519/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018513/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018528/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018484/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018466/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Tipperary

text: human

text: not provided

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/TA-NVRL-S22IRL00018525/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: not provided

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Integrated Covid Hub North East

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Samples prepared at Integrated Covid Hub North East by Integrated Covid Hub North East and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: Health Services Laboratories

text: not provided

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Milton Keynes

text: not provided

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

text: not provided

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Health Services Laboratories

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Latvian Biomedical Research and Study Centre

characteristic: Submitter Id

text: Institute of Food Safety, Animal Health and Environment BIOR

characteristic: collecting institution

text: not provided

characteristic: collection date

characteristic: collector name

text: Nasopharyngeal and Oropharyngeal Swabs

text: Latvia

text: Human

text: diseased

text: Homo sapiens

text: not provided


characteristic: ENA-CHECKLIST

text: Latvian Biomedical Research and Study Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Nasopharyngeal and Oropharyngeal Swabs

characteristic: description

text: Latvia

text: Human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: Central Laboratory, Ltd

text: not provided

text: Central Laboratory, Ltd

text: Nasopharyngeal and Oropharyngeal Swabs

text: Latvia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: E. Gulbis Laboratory, Ltd

characteristic: collecting institution

text: not provided

characteristic: collection date

text: E. Gulbis Laboratory, Ltd

text: Nasopharyngeal and Oropharyngeal Swabs

text: Latvia

text: Human

text: diseased

text: Homo sapiens

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collector name

text: Nasopharyngeal and Oropharyngeal Swabs

characteristic: description

text: Latvia

text: Human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collector name

text: Nasopharyngeal and Oropharyngeal Swabs

characteristic: description

text: Latvia

characteristic: geographic location (country and/or sea)

text: Mink

text: diseased

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Integrated Covid Hub North East

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Health Services Laboratories

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: Plasmodium falciparum


name: E-MTAB-11401:CellPlex PBMCs (pre-sort labelling)

characteristic: ENA-CHECKLIST

text: VIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Commercial frozen PBMCs from 3 different healthy donors (SER-PBMC-F, tebu-bio) were used according to 10x Genomics sample preparation protocol “Fresh Frozen Human Peripheral Blood Mononuclear Cells for Single Cell RNA Sequencing” CG00039 Rev C. cells were collected and processed according to 10x Genomics CG000390 Rev B protocol. DNA libraries were generated according to 10x Genomics CG000390 Rev B protocol.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: CellPlex cell hashing

characteristic: hashing method

text: pool of cells from 3 different donors

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: CellPlex PBMCs (pre-sort labelling)

characteristic: title


name: E-MTAB-11401:LMO (custom) pre-sort labelling 4 tissues

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIB

characteristic: INSDC last update

text: public

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: For the mice (8 weeks old BALB/cJ) brain cell isolation, the Miltenyi Biotech Neural Tissue Dissociation kit (130-092-628) was used without perfusion according to manufacturer’s guideline. 8 weeks old mice (C57BL6/J and C57BL6/N were used for lung and spleen isolation. Single cell suspensions were prepared by digestion in 100µg/mL Liberase TL (Cat 05401020001, Roche, Germany) and 100µg/mL DNase I (11284932001, Roche, Germany) for 30 minutes at 37°C before passing through a 100µm cell strainer. Spleens were rinsed with ice-cold PBS and mashed into small pieces using a plunger of a 10 mL syringe on top of a sterile 100 µm cell strainer mesh in a petri dish containing 2 ml ice-cold RPMI. Red blood cells in the lung and spleen single cell suspensions were lysed using ammonium chloride lysis buffer (10 mM KHCO3, 155 mM NH4Cl, 0,1 mM EDTA in MilliQ water). Single cell suspensions were washed with 1x dPBS before incubation with antibodies. 10x Genomics CG000390 Rev B protocol 10x Genomics CG000390 Rev B protocol

characteristic: description

text: adult

text: normal

text: custom lipid hashing

text: pool of cells from 4 different mice strains

text: Mus musculus

text: Mus musculus

text: brain, spleen, lung, skin

text: Mus musculus


name: E-MTAB-11401:LMO (custom) pre-sort labelling brain

characteristic: ENA-FIRST-PUBLIC

text: VIB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: 8 weeks old mice (BALB/cJ, C57BL/6N and DBA/2J) were deeply anaesthetized and perfused transcardially with 20 ml of ice-cold phosphate buffered saline (PBS). Mice were decapitated, brains were divided in two hemispheres and collected in 1 mL ice-cold Roswell Park Memorial Institute (RPMI) 1640 medium (Gibco). Brains were cut into small pieces (1-2 mm) after which enzyme mix was added (30 U ml−1 DNAse I (Roche), 10 U ml−1 collagenase type I (Worthington) and 400 U ml−1 collagenase type IV (Worthington) diluted in 1X Hanks’ buffered salt solution (Gibco)). The brains were incubated for 20 min at 37 °C, and resuspended with a 1 mL pipet every 10 minutes. The solutions of three hemispheres per condition were pooled and filtered twice over a 100 μm nylon filter and centrifuged. The pellet was resuspended in 5 ml 70% standard isotonic percoll (SIP, GE Healthcare) diluted in 1X Hanks’ buffered salt solution and carefully overlaid with 5 ml of 37% SIP, followed by a 5 ml layer of 30% SIP, forming a three-layered density gradient (centrifuged at 800g, 4 °C, 30 min without acceleration/braking). The 70/37% interphase containing immune cells was collected, centrifuged, pooled per condition, and resuspended in fluorescent activated cell sorter (FACS) buffer (2 mM EDTA (Duchefa), 2% heat-inactivated fetal calf serum (Gibco) dissolved in 1X Hanks’ buffered salt solution). The duration of the entire dissociation process was 4 h. 10x Genomics CG000390 Rev B protocol 10x Genomics CG000390 Rev B protocol

text: adult

text: normal

text: custom lipid hashing

text: pool of cells from 3 different mice strains

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: LMO (custom) pre-sort labelling brain


name: E-MTAB-11401:LMO (MULTISeq) pre-sort labelling 4 tissues

characteristic: ENA-CHECKLIST

text: VIB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: normal

text: MULTISeq hashing

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain, spleen, lung, skin

text: Mus musculus


name: E-MTAB-11401:TotalSeq-B PBMCs (pre-sort labelling)

text: VIB

text: public

text: ArrayExpress

text: human

text: adult

text: normal

characteristic: disease

text: TotalSeq B cell hashing

characteristic: hashing method

text: pool of cells from 3 different donors

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: TotalSeq-B PBMCs (pre-sort labelling)

characteristic: title


name: E-MTAB-11401:TotalSeq-B pre-sort labelling 4 tissues

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIB

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: normal

text: TotalSeq B hashing

text: Mus musculus

text: Mus musculus

text: brain, spleen, lung, skin

text: Mus musculus

text: TotalSeq-B pre-sort labelling 4 tissues


name: E-MTAB-11401:TotalSeq-B pre-sort labelling brain

characteristic: ENA-FIRST-PUBLIC

text: VIB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

text: TotalSeq B hashing

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: TotalSeq-B pre-sort labelling brain


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

tag: Namespace:Hematology Laboratory APHP, Saint-Louis Hospital, Paris, France;

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Bone marrow aspirate MagAttract HMW DNA kit (Qiagen) SMRTbell Express Template Prep Kit 2.0, Pacific Biosciences

text: adult B acute lymphoblastic leukemia

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female

characteristic: sex

text: patient derived xenograft in mouse

characteristic: xenograft


characteristic: ENA-LAST-UPDATE

text: Hematology Laboratory APHP, Saint-Louis Hospital, Paris, France;

text: public

text: ArrayExpress

text: human

text: adult B acute lymphoblastic leukemia

characteristic: disease

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title

text: primary cells


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium; VIB Center for Plant Systems Biology, VIB, Gent, Belgium

text: ArrayExpress

characteristic: broker name

text: Protocols: To identify possible molecular mechanisms with a role in root branching initiation in S. moellendorffii, we employed the developmental root branching assay for an RNA-seq experiment and sampled root tips on each day from 0 to 5 d after the first branching (time point 0), in which 300 µm apical parts were sampled to enrich for the meristematic region, while non-meristematic root regions were sampled separately. Sampled roots in the time course (300 root tips per sample, 4 biological repeats per time point) were cut off using a pair of stainless microscissors and then stored in RNAlater® RNA Stabilization Solution (Thermo Fisher Scientific) according to the manufacturer’s instruction. Subsequently, microdissection was performed to collect root apices of 0.3 mm long, as well as non-meristematic regions between apices and branching point for the 5 d post first branching samples. Plants were grown aseptically under a 16-h light/8-h dark photoperiod at 20.25-43.2 μmol/m2/s in a 24°C growth chamber and roots developed after the transfer of explants to fresh MS1/2 medium. For RNA extraction, samples were ground three times using a QIAGEN Retsch Tissuelyser (30 Hz, 30 s). RNA extraction was done via TRIzol™ reagent (Thermo Fisher Scientific) and the RNeasy Plant Mini Kit (Qiagen) according to the provided protocols. Per sample, an amount of 250 ng of total RNA was used as input. Using the Illumina TruSeq® Stranded mRNA Sample Prep Kit (protocol version: Part # 15031047 Rev. E - October 2013) poly-A containing mRNA molecules were purified from the total RNA input using poly-T oligo-attached magnetic beads. In a reverse transcription reaction using random primers, RNA was converted into first strand cDNA and subsequently converted into double-stranded cDNA in a second strand cDNA synthesis reaction using DNA PolymeraseI and RNAse H. The cDNA fragments were extended with a single 'A' base to the 3' ends of the blunt-ended cDNA fragments after which multiple indexing adapters were ligated introducing different barcodes for each sample. Finally, enrichment PCR was carried out to enrich those DNA fragments that have adapter molecules on both ends and to amplify the amount of DNA in the library.

text: first branching root

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Selaginella moellendorffii

text: Selaginella moellendorffii

text: root

text: meristem

characteristic: sampling site

text: Selaginella moellendorffii


characteristic: ENA-CHECKLIST

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium; VIB Center for Plant Systems Biology, VIB, Gent, Belgium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: first branching root

text: wild type genotype

text: Selaginella moellendorffii

text: Selaginella moellendorffii

text: root

text: meristem

text: Selaginella moellendorffii


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: first branching root

text: wild type genotype

text: Selaginella moellendorffii

characteristic: organism

text: Selaginella moellendorffii

text: root

text: non-meristem

text: Selaginella moellendorffii


E-MTAB-11403:Sample 10

text: Federal University of Goias

text: public

text: E-MTAB-11403:Sample 10

tag: Namespace:Federal University of Goias

characteristic: age

text: ArrayExpress

text: osteoclast

text: house mouse

characteristic: common name

text: Protocols: Cells were washed with PBS 1x and the lysed with the lysis buffer provided by the manufacturer of the kit. Cells were harvested from the bone marrow of 2 femurs from 6-week old mice in the C57Bl6 background, expressing GFP under regulation of Ibsp and mCherry under regulation of Acp5. Due to the insertion of mCherry, the Acp5 gene product was alrered, rendering a TRAP deficient mouse strain. Cells were harvested in alpha MEM. After centrifugation at 1000 rpm for 5 min, the supernatant was removed and the red cells were lyzed using 4,5mL of water. 500uL of PBS 10x was added to equilibrate the pH and osmolarity, and the cells were centrifuged again at 1000 rpm for 5 min. The cells were resuspended in alpha-MEM containing 10% FBS and 30ng/mL of murine MCSF (R&D sytems) and seeded in suspension culture dishes (Corning) for 3 days. Cells described in the growth protocol were harvested from the plate using a cell scraper and seeded at the density of 5,000 cells/well in 96-well culture dishes. The cells were grown in alpha-MEM containing 10%FBS, antibiotics, 30ng/mL MCSF and 4ng/mL RANKL (R&D systems) RNA was extracted using RNAeasy Mini kit following manufacturer’s instructions (Cat no. 74104 - Qiagen) Illumina TruSeq Stranded mRNA

text: TRAP knockout

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: bone marrow macrophage

characteristic: progenitor cell type

text: Mus musculus

characteristic: strain

text: Sample 10

characteristic: title


E-MTAB-11403:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Federal University of Goias

characteristic: INSDC last update

text: public

text: E-MTAB-11403:Sample 11

text: ArrayExpress

characteristic: broker name

text: osteoclast

text: house mouse

text: TRAP knockout

characteristic: genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 11


E-MTAB-11403:Sample 12

characteristic: ENA-CHECKLIST

text: Federal University of Goias

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11403:Sample 12

text: ArrayExpress

text: osteoclast

text: house mouse

text: TRAP knockout

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 12


E-MTAB-11403:Sample 7

characteristic: ENA-LAST-UPDATE

text: Federal University of Goias

text: public

text: E-MTAB-11403:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: Protocols: Cells were washed with PBS 1x and the lysed with the lysis buffer provided by the manufacturer of the kit. Cells were harvested from the bone marrow of 2 femurs from 6-week old mice in the C57Bl6 background, expressing GFP under regulation of Ibsp and mCherry under regulation of Acp5. Due to the insertion of mCherry, the Acp5 gene product was alrered, rendering a TRAP deficient mouse strain. Cells were harvested in alpha MEM. After centrifugation at 1000 rpm for 5 min, the supernatant was removed and the red cells were lyzed using 4,5mL of water. 500uL of PBS 10x was added to equilibrate the pH and osmolarity, and the cells were centrifuged again at 1000 rpm for 5 min. The cells were resuspended in alpha-MEM containing 10% FBS and 30ng/mL of murine MCSF (R&D sytems) and seeded in suspension culture dishes (Corning) for 3 days. Cells described in the growth protocol were harvested from the plate using a cell scraper and seeded at the density of 5,000 cells/well in 96-well culture dishes. The cells were grown in alpha-MEM containing 10%FBS, antibiotics, and 30ng/mL MCSF RNA was extracted using RNAeasy Mini kit following manufacturer’s instructions (Cat no. 74104 - Qiagen) Illumina TruSeq Stranded mRNA

characteristic: description

text: TRAP knockout

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 7


E-MTAB-11403:Sample 8

text: Federal University of Goias

text: public

text: E-MTAB-11403:Sample 8

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: TRAP knockout

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: bone marrow macrophage

characteristic: progenitor cell type

text: Mus musculus

characteristic: strain

text: Sample 8


E-MTAB-11403:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Federal University of Goias

characteristic: INSDC last update

text: public

text: E-MTAB-11403:Sample 9

text: ArrayExpress

characteristic: broker name

text: bone marrow macrophage

text: house mouse

text: TRAP knockout

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 9

characteristic: title


E-MTAB-11403:Sample 1

characteristic: ENA-CHECKLIST

text: Federal University of Goias

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-11403:Sample 1

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: Protocols: Cells were washed with PBS 1x and the lysed with the lysis buffer provided by the manufacturer of the kit. Cells were harvested from the bone marrow of 2 femurs from 6-week old mice in the C57Bl6 background, wild type, in alpha-MEM. After centrifugation at 1000 rpm for 5 min, the supernatant was removed and the red cells were lyzed using 4,5mL of water. 500uL of PBS 10x was added to equilibrate the pH and osmolarity, and the cells were centrifuged again at 1000 rpm for 5 min. The cells were resuspended in alpha-MEM containing 10% FBS and 30ng/mL of murine MCSF (R&D sytems) and seeded in suspension culture dishes (Corning) for 3 days. Cells described in the growth protocol were harvested from the plate using a cell scraper and seeded at the density of 5,000 cells/well in 96-well culture dishes. The cells were grown in alpha-MEM containing 10%FBS, antibiotics, and 30ng/mL MCSF RNA was extracted using RNAeasy Mini kit following manufacturer’s instructions (Cat no. 74104 - Qiagen) Illumina TruSeq Stranded mRNA

text: wild type genotype

characteristic: genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 1


E-MTAB-11403:Sample 2

characteristic: ENA-LAST-UPDATE

text: Federal University of Goias

text: public

characteristic: SRA accession

text: E-MTAB-11403:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: description

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 2


E-MTAB-11403:Sample 3

text: Federal University of Goias

text: public

text: E-MTAB-11403:Sample 3

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: wild type genotype

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: bone marrow macrophage

characteristic: progenitor cell type

text: Mus musculus

text: Sample 3


E-MTAB-11403:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Federal University of Goias

characteristic: INSDC last update

text: public

text: E-MTAB-11403:Sample 4

text: ArrayExpress

characteristic: broker name

text: osteoclast

text: house mouse

text: Protocols: Cells were washed with PBS 1x and the lysed with the lysis buffer provided by the manufacturer of the kit. Cells were harvested from the bone marrow of 2 femurs from 6-week old mice in the C57Bl6 background, wild type, in alpha-MEM. After centrifugation at 1000 rpm for 5 min, the supernatant was removed and the red cells were lyzed using 4,5mL of water. 500uL of PBS 10x was added to equilibrate the pH and osmolarity, and the cells were centrifuged again at 1000 rpm for 5 min. The cells were resuspended in alpha-MEM containing 10% FBS and 30ng/mL of murine MCSF (R&D sytems) and seeded in suspension culture dishes (Corning) for 3 days. Cells described in the growth protocol were harvested from the plate using a cell scraper and seeded at the density of 5,000 cells/well in 96-well culture dishes. The cells were grown in alpha-MEM containing 10%FBS, antibiotics, 30ng/mL MCSF and 4ng/mL RANKL (R&D systems) RNA was extracted using RNAeasy Mini kit following manufacturer’s instructions (Cat no. 74104 - Qiagen) Illumina TruSeq Stranded mRNA

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

characteristic: strain

text: Sample 4


E-MTAB-11403:Sample 5

characteristic: ENA-CHECKLIST

text: Federal University of Goias

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-11403:Sample 5

text: ArrayExpress

text: osteoclast

text: house mouse

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 5

characteristic: title


E-MTAB-11403:Sample 6

characteristic: ENA-LAST-UPDATE

text: Federal University of Goias

text: public

characteristic: SRA accession

text: E-MTAB-11403:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: osteoclast

text: house mouse

text: wild type genotype

characteristic: genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: bone marrow macrophage

text: Mus musculus

text: Sample 6


text: public

tag: Namespace:Advanced Centre for Treatment Research and Education in Cancer

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: 48 DNA samples corresponding to 16 EGFR mutant lung adenocarcinoma patients were collected retrospectively from tumor tissue repository at Tata Memorial Hospital, Mumbai. The sample collection and study protocols were approved by Institutional Review Board at TMC-ACTREC. Genomic DNA extraction from FFPE tumor blocks (both sensitive and resistant) was performed according to standard protocol of QIAmp DNA FFPE Tissue Kit (Catalog No 56404). Genomic DNA extraction from blood was performed according to standard protocol of (). DNA concentration and quality was assessed using Qubit 3.0 fluorometer and Tape Station respectively. Whole exome sequencing was performed on 33 DNA samples using a minimum of 100ng input DNA (based on Qubit quantification) for library preparation. Exome capture was performed using the TruSeq Exome Library Prep Kit. Sequencing was performed on Illumina platform according to standard protocol using 150bp paired end reads

characteristic: description

text: lung adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Sensitive

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Advanced Centre for Treatment Research and Education in Cancer

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Resistant

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: lung adenocarcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: Sensitive

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

text: lung adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Sensitive

characteristic: phenotype

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Resistant

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: lung adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: lung

text: Sensitive

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

text: lung adenocarcinoma

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: Resistant

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:Tree of Life Programme

text: Charlotte Wright

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Mark Blaxter

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Clistosaccus paguri

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Clistosaccus paguri

text: FEMALE

characteristic: sex

characteristic: specimen id

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Charlotte Wright

text: Wellcome Sanger Institute

text: United Kingdom

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Mark Blaxter

text: Wellcome Sanger Institute

text: not provided

text: Clistosaccus paguri

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: sample same as

text: Clistosaccus paguri

text: FEMALE

text: N

characteristic: title


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Jessica Thorpe

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | Farland Point (East Bay)

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Jessica Thorpe

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Idotea neglecta

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Idotea neglecta

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: N

characteristic: symbiont


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thorpe

text: Wellcome Sanger Institute

text: United Kingdom

text: Intertidal

text: Jessica Thorpe

text: Wellcome Sanger Institute

text: not provided

text: Idotea neglecta

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: sample same as

text: Idotea neglecta

text: NOT COLLECTED

text: N

characteristic: tolid


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Mark Blaxter

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | Keppel Pier

characteristic: geographic location (region and locality)

text: Inshore Benthic

characteristic: habitat

text: Mark Blaxterq

characteristic: identified by

text: Sanger Institute

text: not provided

characteristic: lifestage

text: Endeis spinosa

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Endeis spinosa

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thomas

text: Wellcome Sanger Institute

text: United Kingdom

characteristic: geographic location (elevation)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Jessica Thomas

text: Wellcome Sanger Institute

text: not provided

text: Athelges paguri

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Athelges paguri

text: MALE

text: N

characteristic: symbiont


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Jessica Thomas

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Jessica Thomas

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Athelges paguri

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Athelges paguri

text: FEMALE

characteristic: sex

characteristic: specimen id

text: N

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jessica Thomas

text: Wellcome Sanger Institute

text: common hermit crab

characteristic: common name

text: United Kingdom

characteristic: geographic location (elevation)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Jessica Thomas

text: Wellcome Sanger Institute

text: not provided

text: Pagurus bernhardus

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Pagurus bernhardus

text: FEMALE

text: N

characteristic: title


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Max Brown

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Max Brown

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Alentia gelatinosa

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Alentia gelatinosa

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: N

characteristic: symbiont


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Max Brown

text: Wellcome Sanger Institute

text: United Kingdom

characteristic: geographic location (elevation)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Max Brown

text: Wellcome Sanger Institute

text: not provided

text: Hediste diversicolor

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Hediste diversicolor

text: NOT COLLECTED

text: N

characteristic: tolid


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Mark Blaxter

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | Keppel Pier

characteristic: geographic location (region and locality)

text: Inshore Benthic

characteristic: habitat

text: Mark Blaxter

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Endeis spinosa

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Endeis spinosa

text: NOT COLLECTED

characteristic: sex

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Max Brown

text: Wellcome Sanger Institute

text: United Kingdom

characteristic: geographic location (elevation)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Max Brown

text: Wellcome Sanger Institute

text: vegetative structure

text: Chorda filum

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Chorda filum

text: NOT COLLECTED

characteristic: specimen id

text: N

characteristic: symbiont


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Jessica Thorpe

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: common sea slater

characteristic: common name

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | Farland Point (West)

characteristic: geographic location (region and locality)

text: Beach above strand line/HWM

characteristic: habitat

text: Jessica Thorpe

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Ligia oceanica

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Ligia oceanica

text: NOT COLLECTED

characteristic: sex

text: N

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Andrew Griffiths

text: Wellcome Sanger Institute

text: northern acorn barnacle

text: United Kingdom

characteristic: geographic location (elevation)

text: Scotland | Great Cumbrae | White Bay

text: Intertidal

text: Mark Blaxter

text: Wellcome Sanger Institute

text: not provided

text: Semibalanus balanoides

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Semibalanus balanoides

text: NOT COLLECTED

characteristic: specimen id

text: N

characteristic: title


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Manuela Keininger

characteristic: collected by

text: Wellcome Sanger Institute

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Great Cumbrae | White Bay

characteristic: geographic location (region and locality)

text: Intertidal

characteristic: habitat

text: Mark Blaxter

characteristic: identified by

text: Wellcome Sanger Institute

text: not provided

characteristic: lifestage

text: Clistosaccus paguri

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Clistosaccus paguri

text: FEMALE

characteristic: sex

text: N

characteristic: symbiont