TANA

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: public

characteristic: INSDC status

characteristic: SRA accession

text: TANA

text: Blood

characteristic: cell type

text: Craig Primmer

characteristic: collected by

text: Atlantic salmon

text: Tanaelva

text: 70.29N, 28.23E

text: Salmo salar

text: Salmo salar

text: Male

text: European origin

text: Male Atlantic salmon, TANA


FROM

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: FROM

tag: Namespace:NORWEGIAN UNIVERSITY OF LIFE SCIENCES

characteristic: Submitter Id

text: Blood

text: Jamie Stevens

text: Atlantic salmon

characteristic: common name

text: We sequenced a male Atlantic salmon using the PromethION instrument from Oxford Nanopore Technologies, and polished the assembly using Illumina reads.

characteristic: description

text: River Frome, UK

characteristic: geographic location (region and locality)

text: 50.41N, 2.05W

characteristic: lat lon

text: Salmo salar

characteristic: organism

text: Salmo salar

text: Male

characteristic: sex

text: European origin

characteristic: strain

text: Male Atlantic salmon, FROM

characteristic: title


text: MEDICAL UNIVERSITY GRAZ

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MEDICAL UNIVERSITY GRAZ

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Pneumonia

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Aortic aneurysm rupture

text: Homo sapiens

text: Homo sapiens


text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Myocardial infarction

text: Homo sapiens

text: Homo sapiens


text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: human

text: Metastasizing Carcinoma

text: Homo sapiens

text: Homo sapiens


text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

characteristic: common name

text: Septicimia, pulmonary embolisation

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Cardio-respiratory failure

text: Homo sapiens

text: Homo sapiens


text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Right ventricle dilatation

text: Homo sapiens

text: Homo sapiens


OULO

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: public

text: OULO

text: Blood

characteristic: cell type

text: Craig Primmer

characteristic: collected by

text: Atlantic salmon

text: Oulujoki, Finland

characteristic: geographic location (region and locality)

text: 64.98N, 25.61E

characteristic: lat lon

text: Salmo salar

text: Salmo salar

text: Male

text: European origin

text: Male Atlantic salmon, OULO


PERU

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: public

text: PERU

text: Blood

text: Louis Bernatchez

text: Atlantic salmon

text: Lac Perugia, Canada

text: 47.43N, 76.30W

text: Salmo salar

characteristic: organism

text: Salmo salar

text: Male

characteristic: sex

text: North-American origin

characteristic: strain

text: Male Atlantic salmon, PERU

characteristic: title


SEBA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SEBA

text: Blood

text: Cooke Aquaculture Inc.

text: Atlantic salmon

text: We sequenced a female Atlantic salmon using the PromethION instrument from Oxford Nanopore Technologies, and polished the assembly using Illumina reads.

text: Sebago Lake, USA

text: 43.52N, 70.34W

text: Salmo salar

text: Salmo salar

text: Female

text: North-American origin

text: Female Atlantic salmon, SEBA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Blood

text: Sarah Lehnert and Ian Bradbury

text: Atlantic salmon

text: Garnish River, Canada

text: 47.23N, 55.35W

text: Salmo salar

text: Salmo salar

text: Male

text: North-American origin

text: Male Atlantic salmon, GARN-2


characteristic: INSDC last update

text: public

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

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text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collecting institution

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text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Developmental Biology

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession Ey15-2 (ecotype_ID 9994, CS76399)

characteristic: estimated size

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeds were germinated on soil and stratified in darkness at 4C for six days, after which they were transferred to long day conditions (16 h light) at 23C and 65% relative humidity under 110-140 umol m-2 s-1 light provided by Philips GreenPower TLED modules (Philips Lighting GmbH, Hamburg, Germany). To reduce starch accumulation, plants were placed into darkness for 24 h before harvesting.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Developmental Biology

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Aerial part of a single individual 26-days-old of accessionn Col-0 (ecotype_ID 6909, CS76778)

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: University Psychiatric Clinics Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

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text: Homo sapiens

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text: hCoV-19/Switzerland/BS-UHB-75031032/2022

characteristic: isolate

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characteristic: External Id

text: University Hospital Basel

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text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

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text: hCoV-19/Switzerland/BL-UHB-43333089/2022

characteristic: title


characteristic: GISAID Accession ID

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text: hCoV-19/Switzerland/BS-UHB-43333630/2022

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text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

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text: Clinical Virology, University Hospital Basel, Basel, Switzerland

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text: University Hospital Basel

text: public

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text: Kantonsspital Bruderholz, Binningen, Switzerland

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characteristic: host sex

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characteristic: collector name

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text: Center for Laboratory Medicine, St. Gallen, Switzerland

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characteristic: collection date

text: Yannick Gerth

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text: restricted access

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text: hCoV-19/Switzerland/SG-CLM-02064321/2022

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characteristic: collector name

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text: University Hospital Basel

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text: hCoV-19/Switzerland/SG-CLM-02064782/2022

characteristic: title


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text: University Hospital Basel

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text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

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text: hCoV-19/Switzerland/ZH-CLM-02089044/2022

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text: hCoV-19/Switzerland/TG-CLM-02079001/2022

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text: hCoV-19/Switzerland/SG-CLM-02078622/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


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text: hCoV-19/Switzerland/TG-CLM-02079092/2022

characteristic: title


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text: hCoV-19/Switzerland/SG-CLM-02084994/2022

characteristic: title


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text: hCoV-19/Switzerland/SG-CLM-02086798/2022

characteristic: title


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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

text: public

characteristic: INSDC status

text: Blood

characteristic: cell type

text: Thrond Haugen

characteristic: collected by

text: river trout

characteristic: common name

text: We sequenced a male Salmo trutta using the PromethION instrument from Oxford Nanopore Technologies, and polished the assembly using Illumina reads.

characteristic: description

text: �rungselva, Norway

text: 59.43N, 10.43E

characteristic: lat lon

text: Salmo trutta

characteristic: organism

text: Salmo trutta

text: Male

characteristic: sex

text: European origin

characteristic: strain

text: Male Brown trout, ARUN


text: University clinic Duesseldorf

characteristic: INSDC center name

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text: public

characteristic: SRA accession

tag: Namespace:University clinic Duesseldorf

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: title


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characteristic: External Id

text: University clinic Duesseldorf

text: public

characteristic: INSDC status

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


text: University of Tartu, Estonia

characteristic: INSDC center name

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text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

characteristic: Submitter Id

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male

text: host subject id

characteristic: isolation source non-host-associated

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


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