characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i707_i503.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i707_i505.H3NYWDRXY

tag: Namespace:UNIVERSITY OF CAMBRIDGE

characteristic: Submitter Id

unit: day

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i707_i506.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i707_i507.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i707_i508.H3NYWDRXY

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: secondary yolk sac

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i710_i502.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i710_i503.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i710_i506.H3NYWDRXY

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i710_i507.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i710_i508.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i710_i511.H3NYWDRXY

text: ArrayExpress

text: stalk

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: stalk

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i711_i502.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i711_i503.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i711_i505.H3NYWDRXY

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i711_i506.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i711_i507.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i711_i511.H3NYWDRXY

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: extraembryonic mesoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i712_i503.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i712_i506.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i712_i507.H3NYWDRXY

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: secondary yolk sac

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i712_i508.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i712_i510.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i714_i502.H3NYWDRXY

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i714_i503.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i714_i505.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i714_i506.H3NYWDRXY

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i714_i508.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i714_i510.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20329.i715_i502.H3NYWDRXY

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20329.i715_i503.H3NYWDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20329.i715_i506.H3NYWDRXY

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: trophectoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 3

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophectoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hypoblast

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 3

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: hypoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: epiblast

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 3

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: epiblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: stroma

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: stroma

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: secondary yolk sac

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: gland

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: extraembryonic mesoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stalk

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: stalk

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primordial germ cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: stalk

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: stalk

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: myometrium

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: myometrium

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Cytology and Genetics

characteristic: INSDC center name

text: public

tag: Namespace:Institute of Cytology and Genetics

text: fruit fly

characteristic: common name

text: Flies of the wild type D. melanogaster strain Canton S were maintained on a standard medium (agar-agar, 7 gL−1; corn grits, 50 gL−1; dry yeast, 18 gL−1; sugar, 40 gL−1) at 25̊C. Flies were synchronized at eclosion (flies that eclosed within 3 to 4 hours were collected), and experimental groups were exposed to heat stress on daily or weekly basis.

text: Lab strain

text: Drosophila melanogaster

text: Drosophila melanogaster

text: femaile

text: fat body

text: control group


characteristic: ENA-CHECKLIST

text: Institute of Cytology and Genetics

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fruit fly

text: Lab strain

text: Drosophila melanogaster

text: Drosophila melanogaster

text: femaile

text: fat body

text: daily stress


text: Institute of Cytology and Genetics

text: public

characteristic: Submitter Id

text: fruit fly

characteristic: description

text: Lab strain

text: Drosophila melanogaster

text: Drosophila melanogaster

text: femaile

text: fat body

text: weekly stress


text: public

tag: Namespace:Computational Biology and Microbial Ecology

text: cattle

text: Genomic DNA, Cow Bon_B, fasting, 5% sucrose concentration

text: Bos taurus

characteristic: organism

text: Bos taurus


text: Computational Biology and Microbial Ecology

text: public

text: cattle

text: Genomic DNA, Cow Bon_B, post-feeding, 5% sucrose concentration

text: Bos taurus

text: Bos taurus


BONB-fasting-Total

text: public

text: BONB-fasting-Total

text: cattle

text: Genomic DNA, Cow Bon_B, fasting, Total

text: Bos taurus

text: Bos taurus


text: public

text: cattle

text: Genomic DNA, Holstein, Fasting, 5% sucrose concentration

text: Bos taurus

text: Bos taurus


text: public

text: cattle

text: Genomic DNA, Holstein, post-feeding, 5% sucrose concentration

text: Bos taurus

text: Bos taurus


HOL-post-feeding-Total

text: public

text: HOL-post-feeding-Total

text: cattle

text: Genomic DNA, Holstein, post-feeding, Total

text: Bos taurus

text: Bos taurus


text: public

tag: Namespace:Institute of Cancer Research, Medical University of Vienna

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

text: Component of the isogenic knockout HAP1 cell line employed in the arrayed prime editing 2 screen that induces a 5bp deletion in the HEK3 locus to investigate the genetic requirements for enhancement of DNA repair efficiency and fidelity.

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: bone marrow

characteristic: tissue


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Cancer Research, Medical University of Vienna

characteristic: INSDC center name

text: public

text: Loizou lab

text: cancer cell line

text: human

characteristic: common name

text: adult

text: chronic myelogenous leukemia

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: cancer cell line

text: human

characteristic: description

text: adult

text: chronic myelogenous leukemia

text: APTX-KO

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow


text: public

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

characteristic: disease

text: BLM-KO

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Loizou lab

text: cancer cell line

text: human

text: adult

text: chronic myelogenous leukemia

text: DNAPK-KO

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: bone marrow

characteristic: tissue


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: cancer cell line

text: human

characteristic: common name

text: adult

text: chronic myelogenous leukemia

text: FANCA-KO

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: title


text: public

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

text: FANCC-KO

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Loizou lab

text: cancer cell line

text: human

text: adult

text: chronic myelogenous leukemia

characteristic: disease

text: MGMT-KO

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: cancer cell line

text: human

text: adult

text: chronic myelogenous leukemia

text: POLB-KO

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: bone marrow

characteristic: tissue


text: public

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

text: chronic myelogenous leukemia

text: POLE-KO

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Loizou lab

text: cancer cell line

text: human

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

text: POLH-KO

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: cancer cell line

text: human

text: adult

text: chronic myelogenous leukemia

characteristic: disease

text: POLI-KO

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow


text: public

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

characteristic: common name

text: adult

text: chronic myelogenous leukemia

text: POLK-KO

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: bone marrow

characteristic: tissue


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Loizou lab

text: cancer cell line

text: human

characteristic: description

text: adult

text: chronic myelogenous leukemia

text: POLQ-KO

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: cancer cell line

text: human

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

text: WT

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow


text: public

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

characteristic: common name

text: adult

text: chronic myelogenous leukemia

characteristic: disease

text: XLF-KO

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Loizou lab

text: cancer cell line

text: human

text: adult

text: chronic myelogenous leukemia

text: XPA-KO

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: bone marrow

characteristic: tissue


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: cancer cell line

text: human

characteristic: description

text: adult

text: chronic myelogenous leukemia

text: XPC-KO

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: title


text: public

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: chronic myelogenous leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

characteristic: collection date

text: Ancient siberian permafrost - BGG_BOSW

text: permafrost

characteristic: environment (biome)

text: Yedoma

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: cryosoil metagenomes

characteristic: project name

text: metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Permafrost - BGG_BOSW


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Surface cryosoil from Kamchatka - BGG_COSDC

characteristic: description

text: permafrost

text: Vegetation-free soil

text: soil

text: Russia

text: metagenome

text: metagenome

characteristic: organism

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Surface cryosoil - BGG_COSDC

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

characteristic: collection date

text: Surface cryosoil from Kamchatka - BGG_DOSDC

text: permafrost

characteristic: environment (biome)

text: Tundra soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Surface cryosoil - BGG_DOSDC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Surface cryosoil from Kamchatka - BGG_EOSDC

text: permafrost

text: Vegetation-free soil

text: soil

text: Russia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: cryosoil metagenomes

characteristic: project name

text: metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Surface cryosoil - BGG_EOSDC


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ancient permafrost from central Yakutia- BGG_KOSDC

characteristic: description

text: permafrost

text: Yedoma

text: soil

text: Russia

text: metagenome

text: metagenome

characteristic: organism

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Permafrost - BGG_KOSDC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ancient permafrost from central Yakutia - BGG_LOSDA

text: permafrost

characteristic: environment (biome)

text: Alas

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Permafrost - BGG_LOSDA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Ancient permafrost from central Yakutia - BGG_MOSDA

text: permafrost

text: Yedoma

text: soil

text: Russia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: cryosoil metagenomes

characteristic: project name

text: metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Permafrost - BGG_MOSDA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ancient permafrost from central Yakutia - BGG_NOSDA

characteristic: description

text: permafrost

text: Alas

text: soil

text: Russia

text: metagenome

text: metagenome

characteristic: organism

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Permafrost - BGG_NOSDA

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Ancient permafrost from central Yakutia - BGG_OOSDC

text: permafrost

characteristic: environment (biome)

text: Yedoma

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Permafrost - BGG_OOSDC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ancient permafrost from central Yakutia - BGG_POSDC

text: permafrost

text: Yedoma

text: soil

text: Russia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: cryosoil metagenomes

characteristic: project name

text: metagenome

text: Illumina HiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Permafrost - BGG_POSDC


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ancient permafrost from central Yakutia - BGG_QOSDA

characteristic: description

text: permafrost

text: Yedoma

text: soil

text: Russia

text: metagenome

text: metagenome

characteristic: organism

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Permafrost - BGG_QOSDA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNRS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ancient permafrost from central Yakutia - BGG_ROSDA

text: permafrost

characteristic: environment (biome)

text: Alas

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: cryosoil metagenomes

text: metagenome

text: Illumina HiSeq

text: soil

text: Permafrost - BGG_ROSDA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

text: HCT 116

characteristic: cell line

text: cancer cell line

characteristic: cell type

text: human

characteristic: common name

text: Part of a collection of different MMR-deficient cell lines and their complemented MMR-proficient version to study the outcomes of prime editing in different types of loci, edits and cellular backgrounds.

text: adult

characteristic: developmental stage

text: colorectal cancer

characteristic: disease

text: -Chr.3, -Chr.5

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: colonic epithelium

characteristic: tissue


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: HCT 116

text: cancer cell line

text: human

characteristic: description

text: adult

text: colorectal cancer

text: +Chr.3, +Chr.5

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colonic epithelium

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: biological replicate

text: Loizou lab

characteristic: biomaterial provider

characteristic: cell line

text: cancer cell line

text: human

text: adult

text: endometrial adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: uterus endometrium


text: public

text: Loizou lab

text: transformed cell line

characteristic: cell type

text: human

characteristic: common name

text: fetus

characteristic: developmental stage

text: +hMLH1 (repressed)

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

characteristic: technical replicate

text: kidney

characteristic: tissue


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Loizou lab

text: transformed cell line

text: human

text: fetus

text: Homo sapiens

text: Homo sapiens

text: kidney


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

characteristic: INSDC center name

text: public

tag: Namespace:MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: Pieris melete

characteristic: organism

text: Pieris melete

text: PmelChiba

characteristic: title


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

characteristic: INSDC status

text: Pieris melete

text: Pieris melete

text: PmelNagano


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris melete

text: Pieris melete

text: PmelTokushima


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris melete

text: Pieris melete

text: PmelFukushima


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris melete

text: Pieris melete

text: PmelYubari


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris melete

text: Pieris melete

text: PmelNara


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris melete

text: Pieris melete

text: PmelOshamanbe


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapNagano


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapFukushima


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapYubari


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapNara


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapRusutsu


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapMiyazaki


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: Pieris napi

text: Pieris napi

text: PnapKanagawa


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

characteristic: common name

text: Pieris rapae

text: Pieris rapae

text: PrapChiba


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapNagano


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapTokushima


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapNara


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapYubari


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapRusutsu


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapFukushima


text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

text: public

text: cabbage white

text: Pieris rapae

text: Pieris rapae

text: PrapYonaguni


text: Computational Biology and Microbial Ecology

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

text: Dastool

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

characteristic: completeness software %

characteristic: contamination score %

text: Holstein bull_Total samples of ruminal fluid

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Prevotella aff. ruminicola Tc2-24

text: Towards the enrichment and functional and phylogenetic characterization of low abundant bacteria in cattle�s rumen using fractionation of ruminal fluid�

characteristic: project name

characteristic: sample derived from

text: Prevotella aff. ruminicola Tc2-24

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Holstein-Bull-Ruminal_fluid_Post-feeding

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Bacteroidaceae bacterium

characteristic: organism

text: Bacteroidaceae bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

text: Dastool

characteristic: completeness software %

characteristic: contamination score %

text: Holstein bull -Ruminal Fluid_ Fasting

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Bacteroidaceae bacterium

characteristic: project name

characteristic: sample derived from

text: Bacteroidaceae bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

text: Concoct-Anvio

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Ruminal fluid Holstein breed samples, Fasting-post-feeding and Total

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Bacteroidaceae bacterium

characteristic: organism

text: Bacteroidaceae bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

text: Dastool

characteristic: completeness software %

characteristic: contamination score %

text: Holstein bull-Ruminal_fluid_Post-feeding

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Spirochaetes bacterium

characteristic: project name

characteristic: sample derived from

text: Spirochaetes bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

text: Dastool

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Bon cow-Ruminal fluid_Post-feeding

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Bacilli bacterium

characteristic: organism

text: Bacilli bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

text: Concoct-Anvio

characteristic: completeness software %

characteristic: contamination score %

text: Holstein bull_Ruminal_fluid_Fasting

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Bacilli bacterium

characteristic: project name

characteristic: sample derived from

text: Bacilli bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

text: Dastool

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Bon cow-Ruminal fluid_Post-feeding

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Clostridiales bacterium

characteristic: organism

text: Clostridiales bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

text: Dastool

characteristic: completeness software %

characteristic: contamination score %

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Clostridiales bacterium

characteristic: project name

characteristic: sample derived from

text: Clostridiales bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

text: Dastool

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Holtein bull-Ruminal_fluid_Post-feeding

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Clostridiales bacterium

characteristic: organism

text: Clostridiales bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

characteristic: completeness software %

characteristic: contamination score %

text: Holstein bull -Ruminal Fluid_ Fasting

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Clostridiales bacterium

characteristic: project name

characteristic: sample derived from

text: Clostridiales bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Clostridiales bacterium

characteristic: organism

text: Clostridiales bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

text: Concoct-Anvio

characteristic: completeness software %

characteristic: contamination score %

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Clostridiales bacterium

characteristic: project name

characteristic: sample derived from

text: Clostridiales bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: Megahit

characteristic: assembly software

text: default and 1000 pb

characteristic: binning parameters

text: Concoct-Anvio

characteristic: binning software

characteristic: collection date

characteristic: completeness score %

text: Ruminal fluid Bon breed samples, Fasting-post-feeding and Total

text: Rumen

text: anaerobic, liquid-solid

text: Ruminal fluid

text: Colombia

text: metagenome-assembled genome

text: Rumen fluid

text: Rumen bacterium

text: Clostridiales bacterium

characteristic: organism

text: Clostridiales bacterium

text: Illumina -NextSeq

text: all single copy genes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Megahit

text: default and 1000 pb

text: Concoct-Anvio

characteristic: completeness software %

characteristic: contamination score %

characteristic: description

text: Rumen

characteristic: environment (biome)

text: anaerobic, liquid-solid

characteristic: environment (feature)

text: Ruminal fluid

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Rumen fluid

characteristic: isolation source

text: Rumen bacterium

characteristic: metagenomic source

text: Proteobacteria bacterium

characteristic: project name

characteristic: sample derived from

text: Proteobacteria bacterium

text: Illumina -NextSeq

characteristic: sequencing method

text: all single copy genes

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUE OF CHEMCIAL ECOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Pieris napi

characteristic: organism

text: Pieris napi

text: PnapRusutsu

characteristic: title


text: DEPARTMENT OF BIOLOGY , LUND UNIVERSITY

text: public

tag: Namespace:DEPARTMENT OF BIOLOGY , LUND UNIVERSITY

characteristic: collection date

text: captured metatranscriptome, grassland soils

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: environmental zone

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: soil metagenome

text: seqcap-RNA

text: soil metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: grassland soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DEPARTMENT OF BIOLOGY , LUND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: captured metatranscriptome, wheat soils

text: terrestrial biome

text: environmental zone

text: soil

text: Sweden

text: metatranscriptome

text: soil metagenome

text: seqcap-RNA

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: wheat soil


text: John Innes Centre

text: public

characteristic: SRA accession

tag: Namespace:John Innes Centre

characteristic: Submitter Id

characteristic: collection date

text: Wheat stem rust

characteristic: common name

text: Whole genome sequencing of wheat stem rust

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Triticum aestivum

characteristic: host scientific name

text: Puccinia graminis f. sp. tritici

characteristic: organism

text: Puccinia graminis f. sp. tritici

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: John Innes Centre

text: public

text: Rye stem rust

text: Whole genome sequencing of rye stem rust

text: Germany

text: Secale cereale

text: Puccinia graminis f. sp. secalis

text: Puccinia graminis f. sp. secalis


characteristic: External Id

text: John Innes Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Wheat stem rust

text: RNA-Seq of wheat stem rust

text: United Kingdom

text: Triticum aestivum

text: Puccinia graminis f. sp. tritici

text: Puccinia graminis f. sp. tritici


text: John Innes Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Wheat stem rust

text: RNA-Seq of a field sample of wheat stem rust

text: United Kingdom

text: Hordeum vulgare

text: Puccinia graminis f. sp. tritici

text: Puccinia graminis f. sp. tritici


text: John Innes Centre

text: public

characteristic: SRA accession

text: Wheat stem rust

text: Italy

text: Triticum durum

text: Puccinia graminis f. sp. tritici

text: Puccinia graminis f. sp. tritici


text: John Innes Centre

text: public

characteristic: Submitter Id

text: Wheat stem rust

text: France

text: Triticum aestivum

text: Puccinia graminis f. sp. tritici

text: Puccinia graminis f. sp. tritici


text: John Innes Centre

text: public

characteristic: collection date

text: Wheat stem rust

text: Ireland

text: Triticum aestivum

text: Puccinia graminis f. sp. tritici

text: Puccinia graminis f. sp. tritici


text: ADM Lifesequencing

text: public

tag: Namespace:ADM Lifesequencing

text: house mouse

characteristic: common name

text: Low-fat low-sucrose control diet

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

text: Health benefits of yogurt consumption in obese mice

characteristic: project name

text: Mus musculus

text: MiSeq

characteristic: sequencing method

text: Week 0

characteristic: time

text: Mice Feces


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Lifesequencing

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: High-fat high-sucrose diet

text: laboratory facility

text: animal cage

text: feces

text: Canada

characteristic: geographic location (country and/or sea)

text: Feces

text: House mouse C57Bl/6

text: male

text: host-associated

text: metagenome

text: Mus musculus

characteristic: organism

text: Mus musculus

text: MiSeq

text: Week 0

text: Mice Feces

characteristic: title


text: ADM Lifesequencing

text: public

text: house mouse

characteristic: common name

text: High-fat high-sucrose diet with lyophilized yogurt product

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: MiSeq

text: Week 0

text: Mice Feces


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Lifesequencing

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: Low-fat low-sucrose control diet

text: laboratory facility

text: animal cage

text: feces

text: Canada

characteristic: geographic location (country and/or sea)

text: Feces

text: House mouse C57Bl/6

text: male

text: host-associated

text: metagenome

text: Mus musculus

text: Mus musculus

text: MiSeq

characteristic: sequencing method

text: Week 12

characteristic: time

text: Mice Feces


text: ADM Lifesequencing

text: public

text: house mouse

characteristic: common name

text: High-fat high-sucrose diet

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Mus musculus

characteristic: organism

text: Mus musculus

text: MiSeq

text: Week 12

text: Mice Feces

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Lifesequencing

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: laboratory facility

text: animal cage

text: feces

text: Canada

characteristic: geographic location (country and/or sea)

text: Feces

text: House mouse C57Bl/6

text: male

text: host-associated

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: MiSeq

text: Week 12

text: Mice Feces


text: ADM Lifesequencing

text: public

text: house mouse

characteristic: common name

text: High-fat high-sucrose diet with lyophilized non-fermented milk

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Mus musculus

text: Mus musculus

text: MiSeq

characteristic: sequencing method

text: Week 0

characteristic: time

text: Mice Feces


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Lifesequencing

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: High-fat high-sucrose diet with lyophilized inactivated yogurt

text: laboratory facility

text: animal cage

text: feces

text: Canada

characteristic: geographic location (country and/or sea)

text: Feces

text: House mouse C57Bl/6

text: male

text: host-associated

text: metagenome

text: Mus musculus

characteristic: organism

text: Mus musculus

text: MiSeq

text: Week 0

text: Mice Feces

characteristic: title


text: ADM Lifesequencing

text: public

text: house mouse

characteristic: common name

text: Low-fat low-sucrose control diet

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: MiSeq

text: Week 15

text: Mice Feces


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Lifesequencing

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: High-fat high-sucrose diet

text: laboratory facility

text: animal cage

text: feces

text: Canada

characteristic: geographic location (country and/or sea)

text: Feces

text: House mouse C57Bl/6

text: male

text: host-associated

text: metagenome

text: Mus musculus

text: Mus musculus

text: MiSeq

characteristic: sequencing method

text: Week 15

characteristic: time

text: Mice Feces


text: ADM Lifesequencing

text: public

text: house mouse

characteristic: common name

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Mus musculus

characteristic: organism

text: Mus musculus

text: MiSeq

text: Week 15

text: Mice Feces

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Lifesequencing

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: laboratory facility

text: animal cage

text: feces

text: Canada

characteristic: geographic location (country and/or sea)

text: Feces

text: House mouse C57Bl/6

text: male

text: host-associated

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: MiSeq

text: Week 15

text: Mice Feces


text: ADM Lifesequencing

text: public

text: house mouse

characteristic: common name

characteristic: diet

text: laboratory facility

characteristic: environment (biome)

text: animal cage

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: House mouse C57Bl/6

characteristic: host common name

text: male

characteristic: host sex

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Mus musculus

text: Mus musculus

text: MiSeq

characteristic: sequencing method

text: Week 15

characteristic: time

text: Mice Feces


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBE (Institut de Biologia Evolutiva)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IBE (Institut de Biologia Evolutiva)

characteristic: Submitter Id

text: CNAG-CRG

characteristic: broker name

text: Sandra Molloy

characteristic: collected by

text: Dublin's Zoo

characteristic: collecting institution

characteristic: collection date

text: Celebes crested macaque

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Dublin

characteristic: geographic location (region and locality)

text: jungle

characteristic: habitat

text: adult

characteristic: lifestage

text: Macaca nigra

characteristic: organism

text: BLOOD

characteristic: organism part

characteristic: original collection date

text: ORG.ONE

text: Macaca nigra

text: FEMALE

characteristic: sex

text: Aisleen / S786

characteristic: specimen id

text: Celebs crested Macaque DNA

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BAR-ILAN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BAR-ILAN UNIVERSITY

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Ig AIRR-seq data obtained from C57BL/6J mice at five time points from birth to maturity: newborn (0 weeks), 2, 3, 4, and 8 weeks post-partum. We collected the spleen and three segments of the gut (duodenum, colon, and ileum) from each mouse, and sequenced their Ig repertoires. The sequences were processed to fastq format.

characteristic: description

text: Mus musculus

text: Mus musculus

text: Ig AIRR-seq data obtained from C57BL/6J mice from birth to maturity


text: public

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: collection date

text: I

text: organ

characteristic: environment (biome)

text: organ subunit

characteristic: environment (feature)

text: not available

characteristic: environment (material)

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: control

characteristic: gynecological disorder

text: human-vaginal

characteristic: human vaginal environmental package

characteristic: investigation type

text: human metagenome

characteristic: organism

characteristic: project name

text: human metagenome

text: 16S rRNA sequencing

characteristic: sequencing method

text: control

characteristic: treatment status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I

text: organ

text: organ subunit

text: not available

text: Poland

text: control

text: human-vaginal

text: human metagenome

text: human metagenome

text: 16S rRNA sequencing

characteristic: title

text: control


text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

characteristic: collection date

text: lesser mealworm

characteristic: common name

text: Terrestrial (ENVO:00000446)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Alphitobius diaperinus

text: Adult Alphitobius diaperinus Microbial Community Remains a Stable Reservoir for Microbes During Broiler Production

text: Alphitobius diaperinus

text: 454 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

characteristic: investigation type

text: Alphitobius diaperinus

characteristic: organism

characteristic: project name

text: Alphitobius diaperinus

text: 455 GS FLX Titanium

characteristic: sequencing method


text: VIRGINIA COMMONWEALTH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 456 GS FLX Titanium

characteristic: title


text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

characteristic: common name

text: Terrestrial (ENVO:00000446)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 457 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

characteristic: investigation type

text: Alphitobius diaperinus

characteristic: organism

characteristic: project name

text: Alphitobius diaperinus

text: 458 GS FLX Titanium

characteristic: sequencing method


text: VIRGINIA COMMONWEALTH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 459 GS FLX Titanium

characteristic: title


text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

characteristic: common name

text: Terrestrial (ENVO:00000446)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 460 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

characteristic: investigation type

text: Alphitobius diaperinus

characteristic: organism

characteristic: project name

text: Alphitobius diaperinus

text: 461 GS FLX Titanium

characteristic: sequencing method


text: VIRGINIA COMMONWEALTH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 462 GS FLX Titanium

characteristic: title


text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

characteristic: common name

text: Terrestrial (ENVO:00000446)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 463 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

characteristic: investigation type

text: Alphitobius diaperinus

characteristic: organism

characteristic: project name

text: Alphitobius diaperinus

text: 464 GS FLX Titanium

characteristic: sequencing method


text: VIRGINIA COMMONWEALTH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 465 GS FLX Titanium

characteristic: title


text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

characteristic: common name

text: Terrestrial (ENVO:00000446)

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 466 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIRGINIA COMMONWEALTH UNIVERSITY

text: public

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

characteristic: investigation type

text: Alphitobius diaperinus

characteristic: organism

characteristic: project name

text: Alphitobius diaperinus

text: 467 GS FLX Titanium

characteristic: sequencing method


text: VIRGINIA COMMONWEALTH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: lesser mealworm

text: Terrestrial (ENVO:00000446)

text: USA

text: host-associated

text: metagenome

text: Alphitobius diaperinus

text: Alphitobius diaperinus

text: 468 GS FLX Titanium

characteristic: title