characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414574 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: Helicobacter pullorum

characteristic: organism

characteristic: sample derived from

text: Helicobacter pullorum

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414574_bin.58_metaWRAP_v1.1_MAG

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: IDBA-UD

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414584 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

unit: DD

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

text: We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.

characteristic: project name

text: uncultured Alistipes sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414584_bin.99_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414581 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Mycoplasma sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Mycoplasma sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414581_bin.96_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414581_bin.123_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Mycoplasma sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Mycoplasma sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414584_bin.95_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414576 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Lachnoclostridium sp.

characteristic: project name

text: uncultured Lachnoclostridium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414576_bin.40_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414581_bin.60_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414590 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Agathobaculum sp.

characteristic: project name

text: uncultured Agathobaculum sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414590_bin.90_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Eggerthellaceae bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured Eggerthellaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414574_bin.17_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414588 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: [Clostridium] spiroforme

characteristic: project name

text: [Clostridium] spiroforme

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414588_bin.88_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414590_bin.30_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Merdibacter sp.

characteristic: project name

text: uncultured Merdibacter sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414590_bin.128_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414586 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414586_bin.114_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414572 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414572_bin.24_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414590_bin.122_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414585 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414585_bin.8_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414575 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Blautia sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Blautia sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414575_bin.12_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414575_bin.62_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414591 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Anaerotruncus sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Anaerotruncus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414591_bin.23_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414590 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eubacterium sp.

characteristic: project name

text: uncultured Eubacterium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414590_bin.110_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414580 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Lactobacillus sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414580_bin.12_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414588 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

text: We sequenced DNA from cecal contents samples taken from 24 chickens belonging to either a fast or slower growing breed consuming either a vegetable-only diet or a diet containing fish meal. We utilised 1.6T of Illumina data to construct 469 draft metagenome-assembled bacterial genomes, including 460 novel strains, 283 novel species and 42 novel genera.

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414588_bin.26_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414572 of study ERP116122.

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Lachnoclostridium sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Lachnoclostridium sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414572_bin.27_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414579 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Faecalibacterium sp.

characteristic: project name

text: uncultured Faecalibacterium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414579_bin.1_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: uncultured Intestinimonas sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Intestinimonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414590_bin.38_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridium sp.

characteristic: project name

text: uncultured Clostridium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414591_bin.48_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: IDBA-UD

text: metaWRAP v1.1

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: Chicken digestive system

text: Digestive tube

text: Cecum

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: metagenome-assembled genome

text: chicken gut metagenome

characteristic: isolation source

text: chicken gut metagenome

text: Lactobacillus crispatus

characteristic: organism

characteristic: sample derived from

text: Lactobacillus crispatus

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: ERR3414580_bin.36_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: IDBA-UD

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3414573 of study ERP116122.

characteristic: description

text: Chicken digestive system

characteristic: environment (biome)

text: Digestive tube

characteristic: environment (feature)

text: Cecum

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Emergencia sp.

characteristic: project name

text: uncultured Emergencia sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR3414573_bin.35_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-16-02-2022-16:20:34:461-185894

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

characteristic: Submitter Id

characteristic: collection date

text: new isolate of C. tyrobutyricum

text: anaerobic bioreactor

text: anoxic and acidic

text: maize silage

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: single amplified genome

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Clostridium tyrobutyricum

characteristic: organism

text: long-term enrichment

text: Clostridium tyrobutyricum

text: Sanger

text: C. tyrobutyricum BL-2

characteristic: title


text: UCBL

text: public

text: divergent P.acuta from Lyon

characteristic: description

text: Physella acuta

text: Physella acuta

text: divergent mitochondria for RNA-seq


characteristic: ENA-CHECKLIST

text: Dartmouth College

text: public

tag: Namespace:Dartmouth College

text: plasmids from v2 plasmid sequencing run on the oxford nanopore

text: synthetic construct

text: synthetic construct


characteristic: ENA-FIRST-PUBLIC

text: Dartmouth College

text: public

text: plasmids from v1 plasmid sequencing run on the oxford nanopore

text: synthetic construct

text: synthetic construct


characteristic: ENA-LAST-UPDATE

text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Dr. Risch

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-2220303729/2022

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: SG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-2220806517/2022

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Hopital du Valais, Institut Central des Hopitaux, Sion, Switzerland

text: SIB

text: Valais Hospital, Central Institute; Sion, Switzerland

text: Alexis Dumoulin, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: VS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VS-ICH-1100010105/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6585-6443/2022

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6613-6557/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-Risch-2220901020/2022

characteristic: isolate


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-Risch-2220806787/2022

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: FR

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/FR-Risch-2220901011/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-Risch-2220901018/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-Risch-2220901014/2022

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-Risch-2220901017/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-2220203185/2022

characteristic: isolate


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-2220806506/2022

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: SZ

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SZ-Risch-2220900992/2022

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-Risch-2220805786/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-Risch-2220900998/2022

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: SZ

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SZ-Risch-2220900995/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: GR

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GR-Risch-2220900977/2022

characteristic: isolate


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-Risch-2220900983/2022

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-Risch-2220900982/2022

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-2220304651/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-2220805919/2022

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: JU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/JU-Risch-2220805776/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Ender Diagnostics AG, Freiburgstrasse 251, 3018 Bern

text: Switzerland

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