Was-CMBO

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Upper

text: Beech

characteristic: SRA accession

text: Was-CMBO

characteristic: Submitter Id

text: Mixed

characteristic: collection date

text: mimarks-survey

characteristic: description

text: temperate forest

text: forest soil

characteristic: environment (feature)

text: rhizosphere

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

text: Kranzberg project

text: rhizosphere metagenome

text: Illumina

text: Wasserburg

text: Was-CMBO


Was-CMSA

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

text: public

text: Lower

characteristic: Root layer

text: Spruce

characteristic: Root source

text: Was-CMSA

tag: Namespace:Cornell University

text: Mixed

characteristic: Tree root zone

text: mimarks-survey

text: temperate forest

characteristic: environment (biome)

text: forest soil

text: rhizosphere

text: Germany

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Kranzberg project

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Wasserburg

characteristic: site

text: Was-CMSA

characteristic: title


Was-CMSO

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Upper

text: Spruce

characteristic: SRA accession

text: Was-CMSO

characteristic: Submitter Id

text: Mixed

characteristic: collection date

text: mimarks-survey

characteristic: description

text: temperate forest

text: forest soil

characteristic: environment (feature)

text: rhizosphere

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: rhizosphere metagenome

characteristic: organism

text: plant-associated

text: Kranzberg project

text: rhizosphere metagenome

text: Illumina

text: Wasserburg

text: Was-CMSO


Was-CSSA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

text: public

text: Lower

characteristic: Root layer

text: Spruce

characteristic: Root source

text: Was-CSSA

text: Mono-specific spruce

characteristic: Tree root zone

text: mimarks-survey

text: temperate forest

characteristic: environment (biome)

text: spruce forest soil

text: rhizosphere

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: rhizosphere metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Kranzberg project

text: rhizosphere metagenome

text: Illumina

text: Wasserburg

text: Was-CSSA


Was-CSSO

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Upper

text: Spruce

characteristic: SRA accession

text: Was-CSSO

characteristic: Submitter Id

text: Mono-specific spruce

characteristic: collection date

text: mimarks-survey

characteristic: description

text: temperate forest

text: spruce forest soil

text: rhizosphere

text: Germany

text: mimarks-survey

text: rhizosphere metagenome

text: plant-associated

text: Kranzberg project

characteristic: project name

text: rhizosphere metagenome

text: Illumina

characteristic: sequencing method

text: Wasserburg

characteristic: site

text: Was-CSSO

characteristic: title


SAMI00000020-Last Test

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KLE TEch

text: public

text: SAMI00000020-Last Test

tag: Namespace:KLE TEch

text: Indian mustard, brown mustard

characteristic: common name

text: Description

text: Brassica juncea

characteristic: organism

text: Brassica juncea

text: Last Test


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: Medics Labor AG, Bern, Switzerland

characteristic: collecting institution

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-UHB-43000628/2021

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


LakeMedard42 (W)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LakeMedard42 (W)

tag: Namespace:BIOLOGY CENTRE AS CR, V.V.I.

characteristic: Submitter Id

unit: µmol/L

characteristic: ammonium

characteristic: collection date

unit: mS/cm

characteristic: conductivity

text: Planktonic prokaryote microbiome in the water column's redox interface of Lake Medard

characteristic: description

unit: µg/L

characteristic: dissolved inorganic carbon

unit: µmol/kg

characteristic: dissolved oxygen

text: Lacustrine (mining impacted)

characteristic: environment (biome)

text: Oxic to Anoxic redox interface

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Czech Republic

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: [Fe{II)] =0.9 to 1640 µmol/L

characteristic: miscellaneous parameter

characteristic: nitrate

text: freshwater metagenome

characteristic: ph

characteristic: project name

text: +86 to -150

unit: mV

characteristic: redox potential

text: freshwater metagenome

text: Illumina MiSeq 2 x 300 bp paired-end read module

characteristic: sequencing method

unit: mg/L

characteristic: sulfate

text: 16S V3-V4

characteristic: target gene

unit: ºC

characteristic: temperature

text: Post-mining Lake Medard: bottom waters

characteristic: title

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: ammonium

characteristic: collection date

characteristic: conductivity

characteristic: description

characteristic: dissolved inorganic carbon

characteristic: dissolved oxygen

text: Lacustrine (mining impacted)

characteristic: environment (biome)

text: Oxic to Anoxic redox interface

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: [Fe{II)] =0.9 to 1640 µmol/L

text: freshwater metagenome

characteristic: organism

text: +86 to -214

text: freshwater metagenome

text: 16S V3-V4

text: Post-mining Lake Medard: bottom waters

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

text: public

text: 3.4 ± 3.8

text: Lacustrine (mining impacted)

text: Oxic to Anoxic redox interface

text: Water

text: Czech Republic

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: [Fe{II)] = <0.9µmol/L

characteristic: miscellaneous parameter

text: 23.8 ± 0.5

characteristic: nitrate

text: freshwater metagenome

characteristic: ph

characteristic: project name

characteristic: redox potential

text: freshwater metagenome

characteristic: sequencing method

characteristic: sulfate

text: 16S V3-V4

characteristic: target gene

characteristic: temperature

text: Post-mining Lake Medard: bottom waters

characteristic: title

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 5.2 ± 3.7

characteristic: ammonium

characteristic: collection date

characteristic: conductivity

characteristic: description

text: 1900 ±100.

characteristic: dissolved inorganic carbon

characteristic: dissolved oxygen

text: Lacustrine (mining impacted)

characteristic: environment (biome)

text: Oxic to Anoxic redox interface

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: [Fe{II)] =12.0 ± 0.1 µmol/L

text: 24.5 ± 0.5

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: 16S V3-V4

text: Post-mining Lake Medard: bottom waters

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

text: public

text: 34.5 ± 9.8

text: Lacustrine (mining impacted)

text: Oxic to Anoxic redox interface

text: Water

text: Czech Republic

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: [Fe{II)] =2.3 ± 0.1 µmol/L

characteristic: miscellaneous parameter

text: 19.8 ± 1.2

characteristic: nitrate

text: freshwater metagenome

characteristic: ph

characteristic: project name

characteristic: redox potential

text: freshwater metagenome

characteristic: sequencing method

characteristic: sulfate

text: 16S V3-V4

characteristic: target gene

characteristic: temperature

text: Post-mining Lake Medard: bottom waters

characteristic: title

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 68.7 ± 9.8

characteristic: ammonium

characteristic: collection date

characteristic: conductivity

characteristic: description

text: 3.0 ± 0.6

characteristic: dissolved inorganic carbon

characteristic: dissolved oxygen

text: Lacustrine (mining impacted)

characteristic: environment (biome)

text: Oxic to Anoxic redox interface

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: [Fe{II)] = 1139.8 ± 0.1 µmol/L

text: 17.5 ± 1.2

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: 16S V3-V4

text: Post-mining Lake Medard: bottom waters

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

text: public

text: 87.3 ± 14.7

text: 9.8 ± 0.2

text: Lacustrine (mining impacted)

text: Oxic to Anoxic redox interface

text: Water

text: Czech Republic

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: [Fe{II)] = 1025.8 ± 0.1 µmol/L

characteristic: miscellaneous parameter

text: 18.7 ± 0.2

characteristic: nitrate

text: freshwater metagenome

characteristic: ph

characteristic: project name

characteristic: redox potential

text: freshwater metagenome

characteristic: sequencing method

characteristic: sulfate

text: 16S V3-V4

characteristic: target gene

characteristic: temperature

text: Post-mining Lake Medard: bottom waters

characteristic: title

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 134.5 ± 14.7

characteristic: ammonium

characteristic: collection date

characteristic: conductivity

characteristic: description

text: 1.9 ± 0.3

characteristic: dissolved inorganic carbon

characteristic: dissolved oxygen

text: Lacustrine (mining impacted)

characteristic: environment (biome)

text: Oxic to Anoxic redox interface

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: [Fe{II)] = 1636.5 ± 0.1 µmol/L

text: 18.3 ± 0.2

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: 16S V3-V4

text: Post-mining Lake Medard: bottom waters

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

text: public

text: 34.5 ± 9.8

text: 7500 ± 100

text: Lacustrine (mining impacted)

text: Oxic to Anoxic redox interface

text: Water

text: Czech Republic

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: [Fe{II)] =2.3 ± 0.1 µmol/L

characteristic: miscellaneous parameter

text: 19.8 ± 1.2

characteristic: nitrate

text: freshwater metagenome

characteristic: ph

characteristic: project name

characteristic: redox potential

text: freshwater metagenome

characteristic: sequencing method

characteristic: sulfate

text: 16S V3-V4

characteristic: target gene

characteristic: temperature

text: Post-mining Lake Medard: bottom waters

characteristic: title

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE AS CR, V.V.I.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 134.5 ± 14.7

characteristic: ammonium

characteristic: collection date

characteristic: conductivity

text: Planktonic prokaryote community in the water column's redox interface of Lake Medard

characteristic: description

text: 1.9 ± 0.3

characteristic: dissolved inorganic carbon

characteristic: dissolved oxygen

text: Lacustrine (mining impacted)

characteristic: environment (biome)

text: Oxic to Anoxic redox interface

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: [Fe{II)] = 1636.5 ± 0.1 µmol/L

text: 18.3 ± 0.2

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: 16S V3-V4

text: Post-mining Lake Medard: bottom waters

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF CAMBRIDGE

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: stroma

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: stroma

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: myometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: myometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: primordial germ cell

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primordial germ cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i701_i502.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i701_i503.HWCLLBBXX

text: ArrayExpress

text: stalk

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: stalk

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i701_i505.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i701_i508.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stroma

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: stroma

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i702_i505.HWCLLBBXX

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i702_i508.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: stroma

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: stroma

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i702_i511.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i703_i502.HWCLLBBXX

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i703_i503.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i703_i505.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i703_i508.HWCLLBBXX

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i703_i510.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i704_i502.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i704_i503.HWCLLBBXX

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i704_i505.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i704_i508.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: gland

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i704_i510.HWCLLBBXX

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: trophoblast

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i705_i502.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: stalk

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: stalk

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i705_i503.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i705_i506.HWCLLBBXX

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i706_i503.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i706_i505.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i706_i506.HWCLLBBXX

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i706_i508.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i706_i510.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i706_i511.HWCLLBBXX

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i707_i502.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: stroma

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: stroma

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i707_i503.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i707_i505.HWCLLBBXX

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i707_i506.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i707_i507.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i707_i508.HWCLLBBXX

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i707_i510.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i707_i511.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: common name

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i710_i502.HWCLLBBXX

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i710_i503.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i710_i506.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i710_i507.HWCLLBBXX

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i710_i510.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i710_i511.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i711_i502.HWCLLBBXX

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i711_i503.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i711_i505.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: gland

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i711_i506.HWCLLBBXX

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i711_i507.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i711_i508.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i711_i511.HWCLLBBXX

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: remodelled endometrium

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i712_i502.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i712_i503.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i712_i505.HWCLLBBXX

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i712_i506.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i712_i507.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: gland

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i712_i510.HWCLLBBXX

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i712_i511.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i714_i502.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i714_i503.HWCLLBBXX

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i714_i505.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: gland

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i714_i506.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i714_i507.HWCLLBBXX

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i714_i508.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i714_i510.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i714_i511.HWCLLBBXX

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i715_i502.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: stalk

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: stalk

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i715_i503.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primordial germ cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.16564.i715_i505.HWCLLBBXX

text: ArrayExpress

text: gland

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5-7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: gland

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.16564.i715_i507.HWCLLBBXX

characteristic: Submitter Id

text: ArrayExpress

text: remodelled endometrium

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: remodelled endometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.16564.i715_i511.HWCLLBBXX

characteristic: age

text: ArrayExpress

characteristic: broker name

text: myometrium

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5-7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: myometrium

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i701_i503.H3FMJDRXY

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i701_i507.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i701_i508.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i701_i511.H3FMJDRXY

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i702_i503.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i702_i507.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i702_i508.H3FMJDRXY

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: extraembryonic mesoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i702_i510.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i702_i511.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i703_i502.H3FMJDRXY

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i703_i503.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i703_i505.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primordial germ cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i703_i507.H3FMJDRXY

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i703_i510.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i703_i511.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i704_i502.H3FMJDRXY

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: visceral endoderm

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i704_i503.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: visceral endoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: visceral endoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i704_i505.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: secondary yolk sac

text: white-tufted-ear marmoset

characteristic: common name

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: secondary yolk sac

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i704_i508.H3FMJDRXY

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i704_i510.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i704_i511.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i705_i502.H3FMJDRXY

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i705_i503.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i705_i505.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: trophoblast

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: trophoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i705_i506.H3FMJDRXY

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i705_i507.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: extraembryonic mesoderm

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: extraembryonic mesoderm

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i705_i511.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: embryonic disc

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i706_i502.H3FMJDRXY

text: ArrayExpress

text: primordial germ cell

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i706_i505.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i706_i506.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i706_i507.H3FMJDRXY

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 7

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i706_i510.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

text: Carnegie Stage 6

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i707_i502.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primordial germ cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: primordial germ cell

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i707_i503.H3FMJDRXY

text: ArrayExpress

text: embryonic disc

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 5

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: embryonic disc

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9367_2:SLX.20304.i707_i505.H3FMJDRXY

characteristic: Submitter Id

text: ArrayExpress

text: trophoblast

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. For each sample, RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 (65001, Invitrogen) in an RNAse-inhibitor (RNAsin; N2615, Promega) supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

characteristic: description

text: embryo stage

text: Carnegie Stage 5

text: not applicable

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: trophoblast

text: pass

text: Callithrix jacchus

text: not available

text: OK


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-9367_2:SLX.20304.i707_i507.H3FMJDRXY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: amnion

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

characteristic: developmental stage

text: Carnegie Stage 7

text: not applicable

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

text: pass

text: Callithrix jacchus

text: not available

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-9367_2:SLX.20304.i707_i510.H3FMJDRXY

text: ArrayExpress

text: amnion

text: white-tufted-ear marmoset

text: embryo stage

text: Carnegie Stage 6

characteristic: embryo stage

characteristic: individual

text: not applicable

characteristic: isolate

text: Callithrix jacchus

text: Callithrix jacchus

text: amnion

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: not available

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: title