Zea mays

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Keygene N.V.

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Zea mays

tag: Namespace:Keygene N.V.

characteristic: Submitter Id

text: Zea mays

text: Zea mays

characteristic: organism

text: Zea mays

text: Maize


status: PUBLIC

tag: attribute

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Integrated Covid Hub North East

text: not provided

text: Samples prepared at Integrated Covid Hub North East by Integrated Covid Hub North East and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Integrated Covid Hub North East

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Health Services Laboratories

text: not provided

characteristic: collector name

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Health Services Laboratories

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Integrated Covid Hub North East

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: industry partner

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

text: Karin Hohberg

characteristic: collected by

text: Senckenberg

text: Germany

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Görlitz

text: culture

characteristic: habitat

text: Karin Hohberg

characteristic: identified by

text: Senckenberg

text: adult

characteristic: lifestage

text: Acrobeloides nanus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: Miklós Balint

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: LOEWE-TBG

characteristic: sample coordinator affiliation

text: Acrobeloides nanus

text: NOT COLLECTED

characteristic: sex

text: ERGA MB DE 04

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: c6fe8034-b0eb-4656-ba33-6c8f0cad9711-ERGA-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: industry partner

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: Karin Hohberg

text: Senckenberg

characteristic: collecting institution

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Görlitz

characteristic: geographic location (region and locality)

text: culture

text: Karin Hohberg

text: Senckenberg

text: adult

text: Poikilolaimus oxycercus

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: Miklós Balint

text: LOEWE-TBG

text: Poikilolaimus oxycercus

text: NOT COLLECTED

text: ERGA MB DE 02

text: NOT PROVIDED

text: 6a1a818b-d3f1-41f2-9e61-8016fe3249b4-ERGA-specimen


characteristic: ENA-CHECKLIST

text: industry partner

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

text: Clément Schneider

characteristic: collected by

text: Senckenberg

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Frankfurt

text: soil

characteristic: habitat

text: Clémetnt Schneider

characteristic: identified by

text: Senckenberg

text: adult

characteristic: lifestage

text: Megalothorax minimus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: Miklós Balint

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: LOEWE-TBG

characteristic: sample coordinator affiliation

text: Megalothorax minimus

text: NOT COLLECTED

characteristic: sex

text: ERGA MB DE 01

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 6c1f0706-3e20-4b86-ab8b-35b4475764d3-ERGA-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: industry partner

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: Karin Hohberg

text: Senckenberg

characteristic: collecting institution

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Görlitz

characteristic: geographic location (region and locality)

text: culture

text: Karin Hohberg

text: Senckenberg

text: adult

text: Acrobeloides nanus

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: Miklós Balint

text: LOEWE-TBG

characteristic: sample same as

text: Acrobeloides nanus

text: NOT COLLECTED

text: ERGA MB DE 04

text: NOT PROVIDED

text: c8049a80-798d-44dc-9ac5-b541fee0d368-erga


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: industry partner

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

text: Karin Hohberg

characteristic: collected by

text: Senckenberg

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Görlitz

text: culture

characteristic: habitat

text: Karin Hohberg

characteristic: identified by

text: Senckenberg

text: adult

characteristic: lifestage

text: Poikilolaimus oxycercus

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

characteristic: project name

text: Miklós Balint

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: LOEWE-TBG

characteristic: sample coordinator affiliation

text: Poikilolaimus oxycercus

text: NOT COLLECTED

characteristic: sex

text: ERGA MB DE 02

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 254b9c27-a4de-474a-80b6-851be791565d-erga

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: industry partner

characteristic: GAL

text: TBG 2561

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: Clément Schneider

text: Senckenberg

characteristic: collecting institution

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Frankfurt

characteristic: geographic location (region and locality)

text: soil

text: Clémetnt Schneider

text: Senckenberg

text: adult

text: Megalothorax minimus

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

text: Miklós Balint

text: LOEWE-TBG

characteristic: sample same as

text: Megalothorax minimus

text: NOT COLLECTED

text: ERGA MB DE 01

text: NOT PROVIDED

text: f182fb6b-077a-4c3b-93fd-71c3e5e2e320-erga


text: Cell Line

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Sanger Tag 1

characteristic: sample description

text: Homo sapiens

characteristic: title


text: Cell Line

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Cell Line

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: Tumour cell line

text: Homo sapiens

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: Tumour cell line

text: Homo sapiens


text: Tumour cell line

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Cell Pellet

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Cell Pellet

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

text: Estonia

text: human

text: not provided

text: Homo sapiens

text: male

text: host subject id

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


E-MTAB-11585:Sample 1  RA -Ve.1

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 1 RA -Ve.1

tag: Namespace:School of Medicine Cardiff University

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Rheumatoid arthritis (RA) Patients recruitment and PBMCs isolation For this study, 8 ACPA positive RA patients with active disease (DAS28 score range: 4.8-5.7); (mean age=57 years old) and they were on biologic anti rheumatic drugs. All patients were recruited from the Rheumatology Department at the University Hospital of Wales, signed informed consent was obtained from all participants. The study was approved by the Research Ethics Committee for Wales 3 (reference no. 12/WA/0045) University Hospital of Wales. Detailed demographic and laboratory data are described in (Supplementary Tables S1, S2) for intracellular cytokines and WGT assessment, respectively. PBMCs were isolated by standard Ficoll density gradient centrifugation and methodological details are provided in (Supplementary Data S1). All methods were performed in accordance with the relevant guidelines and regulations.Negative selection and sorting of purified monocytes To enrich purified monocytes for assessment of intracellular cytokines using flow cytometry, monocytes were recovered by negative selection in cascades by magnetic-activated cell sorting (MACS) pan monocyte isolation kit (Miltenyi Biotec, UK) following the manufacturer’s protocol. Cells at a minimum density of 106 cells/ml were cultured in complete RPMI medium at 37°C in 5% CO2 controlled environment; the procedure was continued for cell surface/intracellular staining as described below or for the transcriptome analysis. For the transcriptome study, the magnetically purified monocytes were passed through a second step of purification using FACS Aria III based cell sorting. In brief, cells were prepared for sorting, enriched monocyte cell suspensions were incubated with 2 μg/ml Fc human serum immunoglobulin (BD Biosciences; UK) at 4°C for 10 min to reduce non-specific binding by Fc receptors, and a small volume was aliquoted and labelled as unstained that was used for compensation. The cells were then stained with live/dead™ (L/D) fixable viability stain (ThermoFisher Scientific, UK) with fluorochrome-conjugated antibodies to CD14 (BioLegend, USA) at a final dilution of 1/100. All experiments were controlled with appropriate isotype antibodies, compensation beads and unstained cells. To verify the purity and quantity of the sorted monocytes, purity check was performed under sterile conditions at 0-4°C. The purity of the monocytes was 83.3%, 83%, 92.3%, 85.2%, 89.2%, 87%, 90.7%, and 96% respectively for patients RA1- RA8. Sorted monocytes were washed with fresh RPMI medium, counted, and seeded in 6-well plates at a concentration of approximately 1x106 cells/mL in RPMI 1640 complete medium along with either 25 M PNLA or DMSO vehicle control for 24 hours before stimulation with LPS (100 ng/ml) or vehicle control for 4 hours. The cell suspensions were then collected and washed with Ca2+ or Mg2+ free Dulbecco's PBS medium (Thermo Fisher Scientific, UK). The adherent cells were detached from the plastic by addition of 1 ml accuatase cell dissociation reagent (Thermo Fisher Scientific, UK) pH 6.8/well, incubated for 5-8 min at 37°C with 5% CO2, and then washed. The cell suspension was centrifuged at 400 x g at room temperature for 5 min and kept at -80°C in 350 l buffer RLT (provided in RNeasy Mini kit) supplemented with 10% of 2-mercaptoethanol (Gibco Life Science, UK) as a lysate till RNA extraction. Total RNA was isolated using a RNeasy mini kit (Qiagen, Hilden, Germany) from purified monocytes following 100 ng/ml LPS and 25 µM PNLA or vehicle treatment. RNA was purified using a RNeasy kit on-column with DNase I digestion (Qiagen) as described in Supplementary data S3. The cell lysates were stored at −80°C and then passed through a series of spin columns to first bind genomic DNA, then RNA and finally to elute high-quality RNA using the methodology by Takala et al in 2021(6). A quality control check for RNA was assessed as described in Supplementary data S3. Library preparation including ribosomal RNA depletion In collaboration with the Wales Gene Park (Cardiff University), 5 ng of total RNA was depleted of ribosomal RNA using the NEBNext® rRNA Depletion Kit (Human/Mouse/Rat), (New England BioLabs, (UK) Ltd). Ribosomal RNA depletion of each sample was assessed using the Agilent 4200 TapeStation with hsRNA ScreenTape (Agilent Technologies, Inc, UK). The sequencing libraries were prepared using the NEB® Ultra™ II Directional RNA Library Prep Kit for Illumina® (New England BioLabs, (UK) Ltd) protocol. The steps included RNA fragmentation and priming, 1st strand cDNA synthesis, 2nd strand cDNA synthesis, adenylation of 3’ ends, adapter ligation (adapter diluted 1:199) and PCR amplification (16-cycles). Following the addition of the PCR enrichment master mix, a unique index primer was added to each sample. The standard fragmentation procedure of 15 min at 94°C for samples for intact RNA (>7) was reduced to 8 min at 94°C for partially degraded RNA with RIN values 2-6. Except for the replacement of RNAClean® XP beads and SPRI select beads by AMPure XP beads (Beckman Coulter®) the manufacturer’s instructions were followed. The libraries were validated using Agilent 4200 TapeStation and high sensitivity DNA ScreenTapes (Agilent Technologies, Inc, UK) to ascertain the insert size, and the Qubit® (Thermo Fisher Technologies, UK) was used to perform the fluorometric quantitation.

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1 RA -Ve.1


E-MTAB-11585:Sample 10 RA +Ve.2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11585:Sample 10 RA +Ve.2

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 10 RA +Ve.2


E-MTAB-11585:Sample 11 RA +Ve.3

text: School of Medicine Cardiff University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 11 RA +Ve.3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 11 RA +Ve.3

characteristic: title


E-MTAB-11585:Sample 12 RA +Ve.4

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 12 RA +Ve.4

text: ArrayExpress

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 12 RA +Ve.4


E-MTAB-11585:Sample 13 RA +Ve.5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 13 RA +Ve.5

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 13 RA +Ve.5


E-MTAB-11585:Sample 14 RA +Ve.6

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 14 RA +Ve.6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 14 RA +Ve.6


E-MTAB-11585:Sample 15 RA +Ve.7

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 15 RA +Ve.7

text: ArrayExpress

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 15 RA +Ve.7

characteristic: title


E-MTAB-11585:Sample 16 RA +Ve.8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 16 RA +Ve.8

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 16 RA +Ve.8


E-MTAB-11585:Sample 17 RA ttt.1

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 17 RA ttt.1

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 17 RA ttt.1


E-MTAB-11585:Sample 18 RA ttt.2

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 18 RA ttt.2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 18 RA ttt.2


E-MTAB-11585:Sample 19 RA ttt.3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 19 RA ttt.3

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 19 RA ttt.3

characteristic: title


E-MTAB-11585:Sample 2 RA -Ve.2

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 2 RA -Ve.2

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 2 RA -Ve.2


E-MTAB-11585:Sample 20 RA ttt.4

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 20 RA ttt.4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 20 RA ttt.4


E-MTAB-11585:Sample 21 RA ttt.5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 21 RA ttt.5

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 21 RA ttt.5


E-MTAB-11585:Sample 22 RA ttt.6

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 22 RA ttt.6

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 22 RA ttt.6

characteristic: title


E-MTAB-11585:Sample 23 RA ttt.7

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 23 RA ttt.7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

text: adult

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 23 RA ttt.7


E-MTAB-11585:Sample 24 RA ttt.8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 24 RA ttt.8

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Male

characteristic: sex

text: Sample 24 RA ttt.8


E-MTAB-11585:Sample 3 RA -Ve.3

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 3 RA -Ve.3

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 3 RA -Ve.3


E-MTAB-11585:Sample 4  RA -Ve.4

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 4 RA -Ve.4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 4 RA -Ve.4

characteristic: title


E-MTAB-11585:Sample 5  RA -Ve.5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 5 RA -Ve.5

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 5 RA -Ve.5


E-MTAB-11585:Sample 6 RA -Ve.6

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 6 RA -Ve.6

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 6 RA -Ve.6


E-MTAB-11585:Sample 7  RA -Ve.7

text: School of Medicine Cardiff University

text: public

text: E-MTAB-11585:Sample 7 RA -Ve.7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: biologic anti-rheumatic drug

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 7 RA -Ve.7


E-MTAB-11585:Sample 8 RA -Ve.8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of Medicine Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-11585:Sample 8 RA -Ve.8

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

text: CD14 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Male

text: Sample 8 RA -Ve.8

characteristic: title


E-MTAB-11585:Sample 9 RA +Ve.1

text: School of Medicine Cardiff University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11585:Sample 9 RA +Ve.1

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: biologic anti-rheumatic drug

text: human

text: adult

text: rheumatoid arthritis

characteristic: disease

text: CD14 positive

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 9 RA +Ve.1


text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: description

text: Estonia

text: human

text: not provided

text: Homo sapiens

text: male

text: host subject id

characteristic: organism

characteristic: title


text: ecSeq Bioinformatics GmbH

text: public

tag: Namespace:ecSeq Bioinformatics GmbH

characteristic: air temperature regimen

characteristic: collection date

text: Field pennycress

characteristic: common name

text: non-coding transcriptomic data for genome annotation

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber

characteristic: growth facility

text: 16h/ 8h (Day/Night)

characteristic: light regimen

text: Thlaspi arvense

text: Field Pennycress

characteristic: organism common name

characteristic: plant developmental stage

text: Sungrow propagation potting mix

characteristic: plant growth medium

text: pollen

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Thlaspi arvense

text: Sub-irrigated/ 3 times per week

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ecSeq Bioinformatics GmbH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Field pennycress

characteristic: description

text: USA

text: Growth chamber

text: 16h/ 8h (Day/Night)

text: Thlaspi arvense

characteristic: organism

text: Field Pennycress

text: Sungrow propagation potting mix

text: Inflorescence

text: diploid

text: Thlaspi arvense

text: Sub-irrigated/ 3 times per week


text: ecSeq Bioinformatics GmbH

text: public

characteristic: air temperature regimen

characteristic: collection date

text: Field pennycress

characteristic: common name

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber

characteristic: growth facility

text: 16h/ 8h (Day/Night)

characteristic: light regimen

text: Thlaspi arvense

text: Field Pennycress

characteristic: organism common name

characteristic: plant developmental stage

text: Sungrow propagation potting mix

text: rosette

text: diploid

text: Thlaspi arvense

characteristic: title

text: Sub-irrigated/ 3 times per week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ecSeq Bioinformatics GmbH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Field pennycress

text: USA

text: in vitro solid culture medium

text: 16h/ 8h (Day/Night)

text: Thlaspi arvense

text: Field Pennycress

text: ½ MS medium with 0.8% Agar

characteristic: plant growth medium

text: root

characteristic: plant structure

text: diploid

characteristic: ploidy

text: Thlaspi arvense

text: No

characteristic: watering regimen


text: GSC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Porites lobata

characteristic: organism

text: Porites lobata


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

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