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text: hCoV-19/Switzerland/BE-IFIK-220228_os_74/2022

characteristic: organism

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text: restricted access

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text: public

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text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

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text: hCoV-19/Switzerland/BE-IFIK-220228_os_81/2022

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text: hCoV-19/Switzerland/BE-IFIK-220228_os_82/2022


characteristic: ENA-CHECKLIST

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text: hCoV-19/Switzerland/BE-IFIK-220228_os_85/2022


characteristic: ENA-LAST-UPDATE

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text: public

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text: hCoV-19/Switzerland/BE-IFIK-220228_os_88/2022


characteristic: ENA-CHECKLIST

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text: active surveillance in response to outbreak


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text: public

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text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

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text: Human

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text: restricted access

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text: hCoV-19/Switzerland/BE-IFIK-220228_os_93/2022

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text: public

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text: hCoV-19/Switzerland/BE-IFIK-220228_os_94/2022


characteristic: ENA-CHECKLIST

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text: public

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text: Luzerner Kantonsspital Luzern, Zentrum für Labormedizin ZLM; Luzern, Switzerland

text: Switzerland

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text: Human

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text: hCoV-19/Switzerland/LU-IFIK-7030-5736/2022

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text: public

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text: Luzerner Kantonsspital Sursee; Sursee, Switzerland

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text: Human

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text: University clinic Duesseldorf

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characteristic: collecting institution

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text: not collected

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text: human

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text: public

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

characteristic: geographic location (country and/or sea)

text: human

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:122-353616

tag: Namespace:Biology Centre of the Czech Academy of Sciences, Institute of Hidrobiology

text: sediment passage of the Scientific Reserve

characteristic: description

text: cave sediment

characteristic: environment (biome)

text: cave

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Romania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: sediment metagenome

text: The pathogenic potential of old guano deposits - 16S rRNA gene-based metabarcoding in Muierilor Cave, South-Western Carpathians

characteristic: project name

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text: Illumina MiSeq 16S amplicon

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

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text: Biology Centre of the Czech Academy of Sciences, Institute of Hidrobiology

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text: public

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:122-353617

characteristic: Submitter Id

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text: cave sediment

text: cave

text: sediment

text: Romania

characteristic: geographic location (country and/or sea)

text: sediment metagenome

text: sediment metagenome

text: Illumina MiSeq 16S amplicon


characteristic: ENA-CHECKLIST

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text: public

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353618

text: sediment Yellow Chamber

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characteristic: environment (biome)

text: cave

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characteristic: title


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text: public

text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353619

text: sediment Yellow Chamber

text: cave sediment

text: cave

text: sediment

characteristic: environment (material)

text: Romania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: public

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353620

characteristic: Submitter Id

characteristic: collection date

text: white crust Yellow Chamber

text: cave crusts

text: cave

text: crust

text: Romania

characteristic: geographic location (country and/or sea)

text: sediment metagenome

text: sediment metagenome

text: Illumina MiSeq 16S amplicon


characteristic: ENA-CHECKLIST

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text: public

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353621

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characteristic: title


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text: public

text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353622

text: white crust Yellow Chamber

text: cave crusts

text: cave

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characteristic: environment (material)

text: Romania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: sediment metagenome

characteristic: project name

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characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

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text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353623

characteristic: Submitter Id

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text: black crust Yellow Chamber

text: cave crusts

text: cave

text: crust

text: Romania

characteristic: geographic location (country and/or sea)

text: sediment metagenome

text: sediment metagenome

text: Illumina MiSeq 16S amplicon


characteristic: ENA-CHECKLIST

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text: public

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353624

text: black crust Yellow Chamber

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text: ena-SAMPLE-TAB-06-03-2022-14:42:15:123-353625

text: black crust Yellow Chamber

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text: Romania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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tag: Namespace:UNIVERSITY OF OLDENBURG

characteristic: Submitter Id

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text: edible crab

characteristic: common name

text: benthos

text: Cancer pagurus-associated habitat

text: swab sample

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

text: Helgoland

characteristic: geographic location (region and locality)

text: epibacterial community on outer carapace

characteristic: host body site

text: Cancer pagurus

text: Cancer pagurus

text: Illumin Miseq V3.0

text: Black shell disease spot of Cancer pagurus individual I


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text: UNIVERSITY OF OLDENBURG

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text: Illumin Miseq V3.0

characteristic: sequencing method

text: Black shell disease spot of Cancer pagurus individual II


characteristic: ENA-CHECKLIST

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characteristic: geographic location (country and/or sea)

text: Helgoland

characteristic: geographic location (region and locality)

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text: Cancer pagurus

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text: Illumin Miseq V3.0

text: Spot with no vissible shell disease of Cancer pagurus individual II


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text: public

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text: Cancer pagurus

text: Illumin Miseq V3.0

text: Black shell disease spot of Cancer pagurus individual III


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text: Spot with no vissible shell disease of Cancer pagurus individual III

characteristic: title


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text: UNIVERSITY OF OLDENBURG

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characteristic: Submitter Id

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text: edible crab

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text: Cancer pagurus-associated habitat

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characteristic: geographic location (country and/or sea)

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characteristic: sequencing method

text: Black shell disease spot of Cancer pagurus individual IV


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characteristic: geographic location (region and locality)

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text: Cancer pagurus

text: Cancer pagurus

text: Illumin Miseq V3.0

text: Spot with no vissible shell disease of Cancer pagurus individual IV


characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF OLDENBURG

characteristic: INSDC center name

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text: public

characteristic: SRA accession

text: edible crab

text: seawater

text: seawater control

text: seawater filtered over 0.2 μm polycarbonate membranes

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: Helgoland

text: seawater samples

text: Cancer pagurus

text: Cancer pagurus

text: Illumin Miseq V3.0

text: Seawater sample as control


characteristic: ENA-CHECKLIST

text: University clinic Duesseldorf

text: public

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

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text: not collected

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characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

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text: University clinic Duesseldorf

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

characteristic: geographic location (region and locality)

text: human

text: not collected

text: homo sapien

text: not collected


characteristic: ENA-CHECKLIST

text: KULeuven

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: PMBL-derived cell line

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: #units

text: University of Bergen

text: public

tag: Namespace:University of Bergen

text: RNA extracted from whole animal body (stage C5). Trinity assembled transcritome from 15 samples each with 15 pooled animals, and about 20 million reads per sample. Raw data accession: E-MTAB-10917.

text: Calanus finmarchicus

text: Calanus finmarchicus

text: C. finmarchicus transcriptome assembly


text: University of Bergen

text: public

text: RNA extracted from whole animal body (stage C5). Trinity assembled transcritome from 12 samples each with 15 pooled animals, and about 20 million reads per sample. Raw data accession: E-MTAB-10911.

text: Calanus glacialis

text: Calanus glacialis

text: C. glacialis transcriptome assembly


text: University of Bergen

text: public

text: RNA extracted from whole animal body (stage C5). Trinity assembled transcritome from 14 samples each with 10 pooled animals, and about 20 million reads per sample. Raw data accession: E-MTAB-10911.

text: Calanus hyperboreus

text: Calanus hyperboreus

text: C. hyperboreus transciptome assembly


text: KYOTO UNIVERSITY

text: public

tag: Namespace:KYOTO UNIVERSITY

characteristic: cell line

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain


text: KYOTO UNIVERSITY

text: public

text: synthetic RNA

text: synthetic construct

characteristic: organism

text: synthetic construct

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:King Abdullah University of Science and Technology

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: January


characteristic: External Id

text: King Abdullah University of Science and Technology

characteristic: INSDC center name

text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: February


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: March


text: public

characteristic: INSDC status

characteristic: SRA accession

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: April


characteristic: ENA-CHECKLIST

text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: May


text: public

characteristic: Submitter Id

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: June


text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: July


text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: August


text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: September


text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: October


text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: November


text: public

text: Coastal water sample from Red Sea

text: marine plankton metagenome

text: marine plankton metagenome

text: December


text: Hannover Medical School

text: public

tag: Namespace:Hannover Medical School

text: metagenome

text: metagenome


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collected by

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Eastern Cape

characteristic: geographic location

text: Human, Blood culture

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, CSF

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Hadar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Hadar

characteristic: serovar


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00087513/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00087523/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00088022/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00087516/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00087519/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00087520/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00085348/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00087524/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00047932/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00049068/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00049311/2022

characteristic: virus identifier