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characteristic: title


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text: restricted access

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characteristic: isolate

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text: Institute for Infectious Diseases, University of Bern, Switzerland

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text: restricted access

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text: hCoV-19/Switzerland/BE-IFIK-220307_os_69/2022

characteristic: title


characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC status

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text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

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characteristic: host common name

text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220307_os_76/2022


characteristic: ENA-CHECKLIST

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text: Homo sapiens

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characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-220307_os_75/2022

characteristic: title


characteristic: ENA-CHECKLIST

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text: hCoV-19/Switzerland/BE-IFIK-220307_os_78/2022


characteristic: ENA-FIRST-PUBLIC

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text: hCoV-19/Switzerland/BE-IFIK-220307_os_77/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

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text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-220307_os_80/2022

text: active surveillance in response to outbreak

characteristic: title


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characteristic: External Id

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text: public

characteristic: INSDC status

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text: Switzerland

text: BE

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characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220307_os_82/2022


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

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text: hCoV-19/Switzerland/BE-IFIK-220307_os_81/2022

characteristic: isolate

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text: public

text: SIB

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text: Switzerland

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text: restricted access

text: Homo sapiens

text: restricted access

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characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-220307_os_79/2022

characteristic: title


characteristic: ENA-CHECKLIST

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220307_os_83/2022


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

characteristic: GISAID Accession ID

text: public

text: SIB

text: Switzerland

text: BE

text: Human

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text: restricted access

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text: hCoV-19/Switzerland/BE-IFIK-220307_os_84/2022

characteristic: isolate

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text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collection date

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text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-220307_os_85/2022

characteristic: title


characteristic: ENA-FIRST-PUBLIC

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text: public

characteristic: INSDC status

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characteristic: collecting institution

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220307_os_88/2022


characteristic: ENA-CHECKLIST

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

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text: public

text: SIB

text: Luzerner Kantonsspital Luzern, Zentrum für Labormedizin ZLM; Luzern, Switzerland

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: LU

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text: Homo sapiens

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text: restricted access

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text: restricted access

text: hCoV-19/Switzerland/LU-IFIK-7212-4866/2022

characteristic: isolate

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text: public

text: SIB

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text: Switzerland

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text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-220307_os_86/2022

characteristic: title


characteristic: ENA-CHECKLIST

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text: public

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text: Switzerland

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text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-220307_os_87/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

text: Zuid-Holland

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text: Homo sapiens

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text: not provided

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text: restricted access

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text: not collected

characteristic: isolation source host associated

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text: active surveillance in response to outbreak

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text: Dutch COVID-19 response sample sequencing


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text: public

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

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text: not collected

text: Homo sapiens

text: not provided

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characteristic: host subject id

text: not collected

characteristic: title


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text: Dutch COVID-19 response team

text: Human coronavirus 2019

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text: Netherlands

text: Utrecht

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text: not collected

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text: not provided

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text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Flevoland

text: Human

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text: Homo sapiens

text: not provided

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text: not collected

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text: Netherlands

text: Gelderland

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text: not collected

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text: Homo sapiens

text: not provided

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text: not collected

characteristic: title


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

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tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

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characteristic: TITLE

text: not provided

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text: not provided

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text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

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text: not provided

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text: not provided

characteristic: isolate


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characteristic: External Id

characteristic: GISAID Accession ID

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: not provided

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text: not provided

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text: Human

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text: not provided

text: not provided

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characteristic: ENA-CHECKLIST

text: Dr. Risch

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text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Liechtenstein

text: Human

text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-2230401236/2022

characteristic: title


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text: Human

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text: hCoV-19/Liechtenstein/FL-Risch-2230401274/2022

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text: hCoV-19/Liechtenstein/FL-Risch-2230401224/2022

characteristic: title


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text: hCoV-19/Liechtenstein/FL-Risch-2230401301/2022

characteristic: title


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characteristic: host scientific name

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text: hCoV-19/Liechtenstein/FL-Risch-2230401320/2022

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text: restricted access

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text: restricted access

text: restricted access

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text: hCoV-19/Liechtenstein/FL-Risch-2230401377/2022

characteristic: organism

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text: Liechtenstein

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text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-2230401336/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


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text: Dr. Risch

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characteristic: organism

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text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-2230401402/2022

characteristic: title


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text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collecting institution

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text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

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text: hCoV-19/Liechtenstein/FL-Risch-2230401347/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

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text: Dr. Risch

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text: public

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text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Liechtenstein

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-2230401409/2022

characteristic: organism

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

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characteristic: GISAID Accession ID

text: Dr. Risch

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characteristic: INSDC status

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text: SIB

characteristic: broker name

characteristic: collection date

text: Liechtenstein

text: Human

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text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-2230401465/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Dr. Risch

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text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-2230401490/2022

characteristic: isolate


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tag: Namespace:Hopital du Valais, Institut Central des Hopitaux, Sion, Switzerland

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text: Valais Hospital, Central Institute; Sion, Switzerland

text: Alexis Dumoulin, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

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unit: DD

characteristic: geographic location (latitude)

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characteristic: geographic location (longitude)

text: Hawaii | Kauai

text: NOT COLLECTED

characteristic: habitat

text: MATTHEW ROCKMAN

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text: Caenorhabditis kamaaina

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