characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

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text: SIB

characteristic: broker name

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characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-7296-1831/2022

characteristic: organism


status: PUBLIC

tag: attribute

characteristic: GISAID Accession ID

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text: public

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tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

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text: Switzerland

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text: Homo sapiens

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characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-7297-1837/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

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characteristic: ENA-CHECKLIST

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text: Institute for Infectious Diseases, Bern, Switzerland

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text: hCoV-19/Switzerland/BE-IFIK-7298-1838/2022

characteristic: organism


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text: public

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characteristic: collector name

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text: hCoV-19/Switzerland/BE-IFIK-7299-1839/2022


characteristic: ENA-CHECKLIST

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characteristic: organism


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characteristic: GISAID Accession ID

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characteristic: organism


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text: public

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characteristic: ENA-CHECKLIST

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tag: Namespace:Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

text: Science Park of Comenius University of Bratislava

text: not provided

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unit: year

characteristic: host age

text: Human

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text: Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

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text: not provided

text: Homo sapiens

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text: RNA

text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-CHECKLIST

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text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

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text: not provided

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text: Nasopharyngeal swab


characteristic: INSDC center name

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text: Human

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characteristic: host scientific name

text: male

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text: RNA

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text: Other

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characteristic: ENA-CHECKLIST

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tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

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text: Groundwater Inflow

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text: groundwater

characteristic: environment (biome)

text: water

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text: water

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text: Romania

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: groundwater metagenome

characteristic: organism

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text: Illumina MiSeq

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text: Potriva Inflow

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characteristic: INSDC center name

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text: water

text: water

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characteristic: geographic location (country and/or sea)

text: mimarks-survey

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text: Illumina MiSeq

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characteristic: geographic location (depth)

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text: mimarks-survey

text: groundwater metagenome

text: groundwater metagenome

text: Illumina MiSeq

text: Galaseni Inflow

text: water


characteristic: ENA-CHECKLIST

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text: public

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text: water

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characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

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text: Illumina MiSeq

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text: public

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text: groundwater

text: water

text: water

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characteristic: geographic location (country and/or sea)

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text: groundwater metagenome

text: Illumina MiSeq

text: Toaie Inflow

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characteristic: ENA-CHECKLIST

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text: public

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characteristic: geographic location (depth)

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characteristic: ENA-LAST-UPDATE

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text: water

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text: groundwater

text: water

text: water

text: Romania

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: groundwater metagenome

text: groundwater metagenome

text: Illumina MiSeq

text: Cotet Outflow

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characteristic: ENA-LAST-UPDATE

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text: public

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text: mimarks-survey

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text: Vuiaga Inflow

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characteristic: geographic location (country and/or sea)

text: mimarks-survey

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text: Illumina MiSeq

text: Potriva Inflow

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characteristic: ENA-CHECKLIST

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text: public

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: broker name

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text: not provided

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text: Slovakia

characteristic: host age

text: Human

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text: not provided

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text: Homo sapiens

characteristic: host scientific name

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text: Nasopharyngeal swab

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characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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text: Slovakia

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text: not provided

text: Homo sapiens

text: male

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text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-CHECKLIST

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text: public

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text: not provided

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text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not provided

text: Slovakia

unit: month

text: Human

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text: public

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characteristic: SRA accession

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text: Slovakia

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text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: organism


text: Cell line

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

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characteristic: External Id

text: SC

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text: human

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characteristic: title


text: Cell line

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text: public

text: human

text: Homo sapiens

text: Sanger Tag 2

text: Homo sapiens


text: Cell line

text: Homo sapiens

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text: public

text: human

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text: Sanger Tag 3

text: Homo sapiens


text: public

tag: Namespace:Regional Public Health Authority with the seat in Košice, Slovakia

characteristic: broker name

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text: not provided

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text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

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text: Regional Public Health Authority with the seat in Košice, Slovakia

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

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text: Slovakia

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text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

characteristic: organism


text: public

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text: not provided

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text: Slovakia

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characteristic: host age

text: Human

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text: not provided

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text: Homo sapiens

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text: Nasopharyngeal swab


text: Cell line

characteristic: ArrayExpress-Phenotype

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characteristic: External Id

text: SC

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text: Sanger Tag 4

characteristic: sample description

text: Homo sapiens

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text: Cell line

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characteristic: INSDC center name

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characteristic: SRA accession

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text: human

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text: Sanger Tag 5

text: Homo sapiens


text: Cell line

text: Homo sapiens

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text: public

text: human

characteristic: common name

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text: Sanger Tag 6

text: Homo sapiens


text: Cell line

text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Sanger Tag 7

text: Homo sapiens


text: Cell line

text: Homo sapiens

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text: human

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text: Sanger Tag 8

text: Homo sapiens


text: Cell line

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text: public

text: human

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text: Homo sapiens


text: Cell line

text: Homo sapiens

text: SC

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text: human

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text: Sanger Tag 10

text: Homo sapiens


text: Cell line

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text: SC

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text: human

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text: Sanger Tag 11

text: Homo sapiens


text: Cell line

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text: SC

text: public

text: human

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text: Homo sapiens


text: Cell line

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text: SC

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text: human

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text: Sanger Tag 13

text: Homo sapiens


text: Cell line

text: Homo sapiens

text: SC

text: public

text: human

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text: Sanger Tag 14

text: Homo sapiens


text: Cell line

text: Homo sapiens

text: SC

text: public

text: human

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text: Sanger Tag 15

text: Homo sapiens


text: Cell line

text: Homo sapiens

text: SC

text: public

text: human

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text: Sanger Tag 16

text: Homo sapiens


text: Cell line

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text: SC

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text: human

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text: Sanger Tag 17

text: Homo sapiens


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text: SC

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text: Sanger Tag 18

text: Homo sapiens


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text: human

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text: Homo sapiens


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text: human

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text: human

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text: Sanger Tag 58

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text: human

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text: Homo sapiens


text: Cell line

text: Homo sapiens

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text: public

text: human

text: Homo sapiens

text: Sanger Tag 60

text: Homo sapiens


text: Anthony Smith, NICD

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tag: Namespace:Anthony Smith, NICD

text: EnteroBase

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text: A. Smith, National Institute for Communicable Diseases

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text: EnteroBase

characteristic: broker name

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text: Salmonella enterica

text: Typhimurium


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text: EnteroBase

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characteristic: collection date

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text: Salmonella enterica

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text: Anthony Smith, NICD

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text: EnteroBase

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text: EnteroBase

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characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

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text: Human, Stool

text: Salmonella enterica

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text: Salmonella enterica

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text: Anthony Smith, NICD

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text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Chester


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Rectal swab

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Newport

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Pretoria


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa, Gauteng

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Vejle


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Other

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, North West

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: title


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Virchow


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Muenchen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enterica subspecies salamae


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: strain


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: title


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

characteristic: collection date

characteristic: description

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES (SLU)

text: Swedish university of agricultural sciences

text: domestic pig

characteristic: common name

text: Collected 2017-06-12 and given ID 91216-1

text: Sweden

characteristic: geographic location (country and/or sea)

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain

characteristic: tissue type

text: Brain tissue from piglet suffering from congenital tremor


text: SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES (SLU)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: domestic pig

text: Collected 2017-08-28 and given ID 4975-1

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


text: public

characteristic: Submitter Id

characteristic: collected by

text: domestic pig

text: Collected 2017-08-28 and given ID M1

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: domestic pig

text: Collected 2018-01-10 and given ID 17034-1

characteristic: description

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


characteristic: ENA-FIRST-PUBLIC

text: public

text: domestic pig

text: Collected 2018-01-10 and given ID 17034-2

text: Sweden

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus

text: Brain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: domestic pig

text: Collected 2018-06-12 and given ID 886716

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


characteristic: INSDC center name

text: public

text: domestic pig

characteristic: common name

text: Collected 2018-06-12 and given ID 12017

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


text: public

text: domestic pig

text: Collected 2017-03-21 and given ID 4938-1

text: Sweden

characteristic: geographic location (country and/or sea)

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Spinal cord

characteristic: tissue type

text: Spinal cord tissue from piglet suffering from splay leg


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: domestic pig

text: Collected 2017-03-21 and given ID 4938-2

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Spinal cord


text: public

characteristic: INSDC status

characteristic: SRA accession

text: domestic pig

text: Collected 2017-09-07 and given ID 8086-1

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Spinal cord


text: public

characteristic: Submitter Id

characteristic: collected by

text: domestic pig

text: Collected 2017-10-09 and given ID 155

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Spinal cord


characteristic: ENA-CHECKLIST

text: public

text: domestic pig

text: Collected 2017-10-23 and given ID 1787-1

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Spinal cord

characteristic: title


text: public

characteristic: collection date

text: domestic pig

text: Collected 2017-10-25 and given ID 18268-1

characteristic: description

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Spinal cord


characteristic: ENA-FIRST-PUBLIC

text: public

text: domestic pig

text: Collected 2018-03-18 and given ID 3387-1

text: Sweden

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus

text: Spinal cord


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: domestic pig

text: Collected 2017-11-10 and given ID 912-k

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain

text: Brain tissue from healthy control piglet


characteristic: INSDC center name

text: public

text: domestic pig

characteristic: common name

text: Collected 2018-01-25 and given ID 4975-k

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


text: public

text: Swedish university of agricultural sciences

text: domestic pig

text: Collected 2018-02-27 and given ID 299-k

text: Sweden

characteristic: geographic location (country and/or sea)

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain

characteristic: tissue type


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: domestic pig

text: Collected 2018-02-28 and given ID 294-k

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


text: public

characteristic: INSDC status

characteristic: SRA accession

text: domestic pig

text: Collected 2018-03-21 and given ID 8086-k

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


text: public

characteristic: Submitter Id

characteristic: collected by

text: domestic pig

text: Collected 2018-06-11 and given ID 390

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain


characteristic: ENA-CHECKLIST

text: public

text: domestic pig

text: Collected 2018-06-11 and given ID 368

text: Sweden

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Brain

characteristic: title


text: EMBL

text: public

characteristic: collection date

text: human-associated habitat [ENVO:00009003]

characteristic: environment (biome)

text: blood plasma [UBERON:0001969]

characteristic: environment (feature)

text: blood plasma [UBERON:0001969]

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: human blood metagenome

characteristic: project name

text: human blood metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: pancreas [UBERON:0001264]

text: pancreas [UBERON:0001264]

text: Spain

characteristic: geographic location (country and/or sea)

text: human-associated

text: metagenome

text: human metagenome

characteristic: organism

text: human metagenome

text: Illumina


characteristic: ENA-CHECKLIST

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: duodenum [UBERON:0002114]

text: duodenum [UBERON:0002114]

text: Spain

text: human-associated

text: metagenome

text: human metagenome

text: human metagenome

text: Illumina

characteristic: title


text: EMBL

text: public

text: pancreas [UBERON:0001264]

characteristic: environment (feature)

text: pancreatic duct [UBERON:0007329]

characteristic: environment (material)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: human metagenome

characteristic: project name

text: human metagenome

text: Illumina


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: mouth environment [ENVO:08000002]

text: saliva [ENVO:02000036]

text: Spain

text: human-associated

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: intestine environment [ENVO:2100002]

text: feces [ENVO:00002003]

text: Spain

characteristic: geographic location (country and/or sea)

text: human-associated

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Illumina


text: EMBL

text: public

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva [ENVO:02000036]

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: pancreas [UBERON:0001264]

text: pancreas [UBERON:0001264]

text: human-associated

text: metagenome

characteristic: investigation type

text: human metagenome

characteristic: project name

text: human metagenome

text: Illumina


characteristic: ENA-CHECKLIST

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: blood plasma [UBERON:0001969]

text: blood plasma [UBERON:0001969]

text: human-associated

text: metagenome

text: human blood metagenome

text: human blood metagenome

text: Illumina

characteristic: sequencing method


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43389835/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43389859/2022

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SO

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SO-UHB-43357268/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43366055/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-43380701/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-UHB-43390153/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43390157/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43390162/2022

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43390170/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43390181/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-UHB-43390235/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43390247/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-43390267/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43390269/2022

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-43390278/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

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text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

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text: Severe acute respiratory syndrome coronavirus 2


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text: active surveillance in response to outbreak

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text: Clinical Virology, University Hospital Basel, Basel, Switzerland

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text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

text: Switzerland

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text: hCoV-19/Switzerland/AG-UHB-43390046/2022

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text: hCoV-19/Switzerland/BS-UHB-43390056/2022


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text: hCoV-19/Switzerland/BS-UHB-43390087/2022

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characteristic: geographic location (region and locality)

text: Human

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text: hCoV-19/Switzerland/BS-UHB-43390108/2022


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text: Switzerland

text: BS

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43390135/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


text: CARDIFF UNIVERSITY

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tag: Namespace:CARDIFF UNIVERSITY

text: ArrayExpress

characteristic: cell line

text: neuron

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cultures were washed with D-PBS and lysed with 350 μl of RLT RNA lysis buffer containing 1 % β-mercaptoethanol. Human ES cells lacking TrkB designated A10 were plated on matrigel-coated plates (Corning, VWR) and maintained in mTSER medium (STEMCELL Technologies). hES cells were passaged with RelesR from (StemCell Technologies) and seeded for an 8-day phase of neuronal induction in SLI medium which contained Advanced DMEM F-12 medium supplemented with glutamax, penicillin and streptomycin (ADF, Life Technologies) and 2% NeuroBrew-21 without retinoic acid (Miltenyi), the SMAD pathway inhibitors LDN193189 (1μM) and SB431542 (10μM), and the WNT pathway inhibitor IWR1 (1.5μM) (Tocris). Subsequently, neural progenitors were dissociated with Accutase (Life Technologies) and re-seeded for expansion to day 16 in LIA medium which contained ADF medium with 2% NeuroBrew-21 without retinoic acid (Miltenyi), LDN193189 (0.2μM), IWR1 (1.5μM) (Tocris) and 25 ng/ml of Activin A (Peprotech). Neuronal differentiation was initiated by seeding neural progenitors on a substrate of growth factor-reduced matrigel (Corning, VWR) & poly- L- lysine (Sigma) at a density of 100K cells/cm2 and cultured for 7 days in SynaptoJuice A medium which contained Advanced DMEM:F12 (with Glutamax), 1% penicillin/streptomycin, 2 % NeuroBrew21 with retinoic acid (Miltenyi Biotec), 2 µM PD0332991 (Selleckchem), 10 µM DAPT (Sigma-Aldrich), 0.6 mM CaCl2 (to give 1.8 mM CaCl2 in final complete medium (Sigma-Aldrich), and 200 mM ascorbic acid (Sigma-Aldrich). The medium was replaced at day 7 post-plating by SynaptoJuice B medium which contained equal parts Advanced DMEM/F12 (with Glutamax) and Neurobasal A (Life Technologies), 1% penicillin/streptomycin (Life Technologies), 2% NeuroBrew-21 with retinoic acid (Miltenyi Biotec), 2 µM PD0332991 (Selleckchem), 3 µM CHIR 99021 (Tocris Bioscience), 0.3 mM CaCl2 (1.8 mM CaCl2 final), and 200 µM ascorbic acid (Sigma-Aldrich). Plated neurons were maintained for up to 14 days before exposure to TrkC ligand. Total RNA was extracted from human neurons using the RNeasy Mini kit (Qiagen). The TruSeq® Stranded mRNA Sample Preparation Guide and the high-throughput (HT) kit from Illumina was used according to the manufacturer’s instructions.

characteristic: description

text: embryo stage

characteristic: developmental stage

text: CRISPR-Cas9 deletion of NTRK2

characteristic: genetic modification

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: TrkB deficient

characteristic: phenotype

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex