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text: Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Engebretsen Serina Beate, Pedersen Benedikte Nevjen, Line Victoria Moen, Hilde Nordby Falkenhaug, Debech Nadia, Atiya R Ali, Marie Paulsen Madsen, Rasmus Riis Kopperud, Hilde Vollan, Karoline Bragstad, Olav Hungnes

text: ELIXIR-Norway

characteristic: broker name

text: not provided

text: Norway

text: Innlandet

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolation source host associated

characteristic: title


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tag: attribute

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characteristic: Submitter Id

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text: Unilabs Laboratory Medicine ; Leirvollen 19, N-3736 Skien, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

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text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

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text: not provided

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text: Homo sapiens

characteristic: host scientific name

text: not provided

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text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


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text: Norwegian Institute of Public Health (NIPH)

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text: Medical Microbiology Unit, Department for Laboratory Medicine, Drammen Hospital, Vestre Viken Health Trust ; P.O.Box 800, N-3004 Drammen, Norway

text: not provided

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characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

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text: public

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text: Ostfold Hospital Trust - Kalnes, Centre for Laboratory Medicine, Section for gene technology and infection serology ; P.O.Box 300, N-1714 Graalum, Norway

text: not provided

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characteristic: host common name

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characteristic: broker name

text: Akershus University Hospital, Department for Microbiology and Infectious Disease Control ; P.O.Box 1000, N-1478 Loerenskog, Norway

text: not provided

text: Norway

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text: Hospital of Southern Norway - Kristiansand, Department of Medical Microbiology ; P.O.Box 416 Lundsiden, N-4604 Kristiansand, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Agder

characteristic: geographic location (region and locality)

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text: not provided

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characteristic: External Id

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text: public

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text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

text: not provided

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text: Foerde Hospital, Department of Microbiology ; P.O.Box 1000, N-6807 Foerde, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

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text: University Hospital of Northern Norway, Department for Microbiology and Infectious Disease Control ; P.O.Box 56, N-9038 Tromsoe, Norway

text: not provided

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text: Science Park of Comenius University of Bratislava

characteristic: broker name

text: not provided

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text: Slovakia

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text: Human

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text: active surveillance in response to outbreak

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text: Slovakia

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text: not provided

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text: not provided

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text: not provided

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characteristic: geographic location (country and/or sea)

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text: not provided

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characteristic: geographic location (region and locality)

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text: Furst Medical Laboratory ; Soeren Bulls vei 25, N-1051 Oslo, Norway

text: not provided

text: Norway

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characteristic: host common name

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text: Nordland Hospital - Bodo, Laboratory Department, Molecular Biology Unit ; P.O.Box 1480, N-8092 Bodo, Norway

text: not provided

text: Norway

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text: Human

text: not provided

characteristic: host health state

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text: not provided

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text: Norway

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text: Innlandet

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

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characteristic: ENA-CHECKLIST

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characteristic: broker name

text: Department Medical Microbiology, Baerum Hospital, Vestre Viken Health Trust ; P.O.Box 800, N-3004 Drammen, Norway

text: not provided

text: Norway

text: Viken

text: Human

characteristic: host common name

text: not provided

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characteristic: External Id

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text: public

characteristic: Submitter Id

text: Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Engebretsen Serina Beate, Pedersen Benedikte Nevjen, Line Victoria Moen, Hilde Nordby Falkenhaug, Debech Nadia, Atiya R Ali, Marie Paulsen Madsen, Rasmus Riis Kopperud, Hilde Vollan, Karoline Bragstad, Olav Hungnes

characteristic: authors

text: ELIXIR-Norway

text: Unilabs Laboratory Medicine ; Silurveien 2 B, N-0380 Oslo, Norway

text: not provided

text: Norway

text: Oslo

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELIXIR-Norway

text: Dept. of Medical Microbiology, Stavanger University Hospital, Helse Stavanger HF ; P.O.Box 8100, N-4068 Stavanger, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Agder

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Norwegian Institute of Public Health (NIPH)

characteristic: INSDC center name

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text: ELIXIR-Norway

characteristic: broker name

text: not provided

text: Norway

text: Rogaland

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characteristic: host common name

text: not provided

text: Homo sapiens

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text: not provided

characteristic: host subject id

text: not provided

characteristic: isolation source host associated

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text: not provided

characteristic: host health state

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text: not provided

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text: not provided

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text: not provided

characteristic: organism


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characteristic: External Id

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text: public

characteristic: Submitter Id

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characteristic: ENA-CHECKLIST

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text: Ostfold Hospital Trust - Kalnes, Centre for Laboratory Medicine, Section for gene technology and infection serology ; P.O.Box 300, N-1714 Graalum, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

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text: public

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characteristic: External Id

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text: public

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text: not provided

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text: Slovakia

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text: Human

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text: Homo sapiens

characteristic: host scientific name

text: female

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characteristic: host common name

text: not provided

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text: Unilabs Laboratory Medicine ; Leirvollen 19, N-3736 Skien, Norway

text: not provided

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characteristic: geographic location (region and locality)

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text: public

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text: ELIXIR-Norway

text: not provided

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text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

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text: Telemark Hospital Trust - Skien, Dept. of Medical Microbiology ; P.O.Box 2900 Kjørbekk, N-3710 Skien

text: not provided

text: Norway

text: Vestfold og Telemark

text: Human

text: not provided

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text: Akershus University Hospital, Department for Microbiology and Infectious Disease Control ; P.O.Box 1000, N-1478 Loerenskog, Norway

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text: not provided

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text: Innlandet

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text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

text: not provided

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text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

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text: not provided

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text: not provided

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text: public

characteristic: Submitter Id

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text: ELIXIR-Norway

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Vestfold og Telemark

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text: Haukeland University Hospital, Dept. of Microbiology ; P.O.Box 1400, N-5021 Bergen, Norway

text: not provided

text: Norway

text: Vestland

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text: Homo sapiens

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text: public

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characteristic: broker name

text: Innlandet Hospital Trust, Division Lillehammer, Department for Medical Microbiology ; P.O.Box 990, N-2629 Lillehammer, Norway

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text: not provided

text: Norway

text: Innlandet

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text: Department of Medical Microbiology, St. Olavs hospital ; P.O.box 3250 Torgarden, N-7006 Trondheim, Norway

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Trondelag

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text: not provided

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: public

characteristic: Submitter Id

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text: ELIXIR-Norway

text: University Hospital of Northern Norway, Department for Microbiology and Infectious Disease Control ; P.O.Box 56, N-9038 Tromsoe, Norway

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Troms og Finnmark

characteristic: geographic location (region and locality)

text: Human

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tag: Namespace:Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University

text: Science Park of Comenius University of Bratislava

text: not provided

characteristic: collector name

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text: Slovakia

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text: Human

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text: active surveillance in response to outbreak

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characteristic: host scientific name

text: male

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characteristic: External Id

characteristic: GISAID Accession ID

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text: Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Engebretsen Serina Beate, Pedersen Benedikte Nevjen, Line Victoria Moen, Hilde Nordby Falkenhaug, Debech Nadia, Atiya R Ali, Marie Paulsen Madsen, Rasmus Riis Kopperud, Hilde Vollan, Karoline Bragstad, Olav Hungnes

characteristic: authors

text: ELIXIR-Norway

text: Furst Medical Laboratory ; Soeren Bulls vei 25, N-1051 Oslo, Norway

text: not provided

characteristic: collector name

text: Norway

text: Oslo

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

characteristic: Submitter Id

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

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text: Severe acute respiratory syndrome coronavirus 2

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text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


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tag: Namespace:Public Health Authority of the Slovak Republic

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characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

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text: female

text: RNA

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text: Nasopharyngeal swab

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characteristic: organism


characteristic: ENA-LAST-UPDATE

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text: Public Health Authority of the Slovak Republic

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characteristic: host scientific name

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characteristic: host sex

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text: Nasopharyngeal swab

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tag: Namespace:Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

characteristic: collection date

text: not provided

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text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism


characteristic: ENA-CHECKLIST

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text: Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collector name

text: Slovakia

characteristic: host age

text: Human

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text: not provided

characteristic: host health state

text: Homo sapiens

text: female

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characteristic: ENA-LAST-UPDATE

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characteristic: INSDC center name

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characteristic: broker name

characteristic: collecting institution

text: not provided

text: Slovakia

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text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

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characteristic: sample capture status


characteristic: ENA-CHECKLIST

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text: public

characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism


characteristic: ENA-LAST-UPDATE

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characteristic: SRA accession

text: not provided

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text: Slovakia

characteristic: host age

text: Human

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text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: RNA

text: Other


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: RNA

text: Nasopharyngeal swab

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Regional Public Health Authority with the seat in Košice, Slovakia

text: not provided

characteristic: collector name

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Public Health Authority with the seat in Košice, Slovakia

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

text: Nasopharyngeal swab

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

characteristic: collector name

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: RNA

text: Nasopharyngeal swab

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BRGM

characteristic: INSDC first public

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C3, replicate A

characteristic: description

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (country and/or sea)

text: environmental sample

characteristic: isolation source

text: freshwater sediment metagenome

characteristic: organism

text: freshwater sediment metagenome

text: Crieu river sediment C3-A

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BRGM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Top layer of sediments from the river Crieu, Ariege, France, point C3, replicate B

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C3-B


text: BRGM

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Top layer of sediments from the river Crieu, Ariege, France, point C3, replicate C

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C3-C


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C4, replicate A

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C4-A


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C4, replicate B

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C4-B


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C4, replicate C

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C4-C


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C5, replicate A

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C5-A


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C5, replicate B

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C5-B


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C5, replicate C

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C5-C


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C6, replicate A

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C6-A


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C6, replicate B

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C6-B


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C6, replicate C

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C6-C


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C6b, replicate A

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C6b-A


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C6b, replicate B

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C6b-B


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C6b, replicate C

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C6b-C


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C7, replicate A

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C7-A


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C7, replicate B

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C7-B


text: BRGM

text: public

text: Top layer of sediments from the river Crieu, Ariege, France, point C7, replicate C

text: Yes

text: France

text: environmental sample

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Crieu river sediment C7-C


text: public

text: Tissue isolation was performed as described in Figueiredo, M. and Neves, H. (2019). Isolation of Embryonic Tissues and Formation of Quail-Chicken Chimeric Organs Using The Thymus Example. J. Vis. Exp. e58965. Total RNA was extracted from 15-20 embryo explants with Trizol reagent and RNeasy Mini Kit (Qiagen).

characteristic: Sample preparation

tag: Namespace:BioISI - Faculty of Sciences, University of Lisbon

text: Japanese quail

characteristic: common name

text: Second pharyngeal pouches endoderm

text: Embryonic day 3

characteristic: dev stage

text: Coturnix japonica

text: Coturnix japonica

text: Endoderm

characteristic: tissue type


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BioISI - Faculty of Sciences, University of Lisbon

characteristic: INSDC first public

text: public

text: Japanese quail

text: Second pharyngeal pouches endoderm

characteristic: description

text: Embryonic day 3

text: Coturnix japonica

text: Coturnix japonica

text: Endoderm


text: public

text: Japanese quail

text: Third and fourth pharyngeal pouches endoderm

text: Embryonic day 3

text: Coturnix japonica

characteristic: organism

text: Coturnix japonica

text: Endoderm


text: public

text: Japanese quail

text: Pharynx endoderm - central region

text: Embryonic day 3

text: Coturnix japonica

text: Coturnix japonica

text: Endoderm

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: chicken

text: Second pharyngeal arch mesenchyme - dorsal region

text: Embryonic day 2.5

text: Gallus gallus

text: Gallus gallus

text: Mesoderm and Neural crest


characteristic: ENA-FIRST-PUBLIC

text: public

text: chicken

text: Third and fourth pharyngeal arch mesenchyme

text: Embryonic day 2.5

text: Gallus gallus

text: Gallus gallus

text: Mesoderm and Neural crest


text: Biomedical Centre Martin, Jessenius Faculty of Medicine in Martin, Comenius University

characteristic: INSDC last update

text: public

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: common name

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CN-NVRL-S22IRL00106900/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cavan

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00085333/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CN-NVRL-S22IRL00085335/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cavan

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00085334/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-S22IRL00105658/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cork

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00105241/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-S22IRL00087777/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cork

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00087808/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-S22IRL00085108/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cork

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00087032/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-S22IRL00105240/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cork

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00085102/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-S22IRL00087042/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

text: Europe / Ireland / Cork

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00085094/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: hCoV-19/Ireland/CO-NVRL-S22IRL00087038/2022

characteristic: title

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Cork

text: human

characteristic: host common name

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00087046/2022


text: NVRL

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

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text: National Virus Reference Laboratory

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characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

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text: Europe / Ireland / Cork

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text: Europe / Ireland / Cork

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text: NVRL

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text: Europe / Ireland / Cork

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text: Europe / Ireland / Carlow

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text: hCoV-19/Ireland/CW-NVRL-S22IRL00105316/2022

characteristic: title

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text: NVRL

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text: Europe / Ireland / Carlow

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text: Homo sapiens

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text: Irish Consortium for Sequencing Covid

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

text: Europe / Ireland / Carlow

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text: hCoV-19/Ireland/CW-NVRL-S22IRL00106295/2022


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text: Europe / Ireland / Carlow

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text: hCoV-19/Ireland/CW-NVRL-S22IRL00105610/2022

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text: not provided

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text: hCoV-19/Ireland/CW-NVRL-S22IRL00104998/2022