text: NVRL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00065914/2022

characteristic: virus identifier


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

unit: DD

text: Europe / Ireland / Wexford

unit: year

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/WX-NVRL-S22IRL00065915/2022

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

text: not provided

characteristic: collector name

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11507:infected_engorged_1_lib03358

tag: Namespace:Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Diagnostic Virology

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: Colonies of O. moubata were maintained in the insectary within the biosafety level 2 facilities. All developmental stages were kept in darkness in an incubator (25°C; 85% RH). An artificial feeding system was applied to fed the ticks in vitro. To obtain non-infected unfed females, unfed adult O. moubata which had not fed for six months were used. To obtain non-infected engorged females, unfed adult O. moubata were allowed to fed to repletion as described above. Swine blood of the same lot number was used to obtain B. duttonii-infected females, except that the blood was spiked with in vitro cultured B. duttonii at a final concentration of 2 × 106 spirochaetes/ml, which corresponds to the spirochaetemia in the blood of an infected BALB/c laboratory mice during the first few days of infection. Tick midguts were dissected from unfed females and from fed females 24 h post feeding. Washed midguts were snap frozen in liquid nitrogen and cryofractured individually using the cryoPREP impactor (Covaris, Brighton, UK). Total RNA was isolated from the pulverized midgut by adding 750 µl TRIzol LS Reagent (Life Technologies, Darmstadt, Germany) and 250 µl chloroform. After centrifugation at 13,000 × g (4°C) the upper aqueous phase was collected and used as input for the Agencourt RNAdvance Tissue Kit (Beckman Coulter, Krefeld, Germany) in combination with a KingFisher Flex System (Thermo Fisher Scientific, Darmstadt, Germany) for automated extraction. A DNAse I (Qiagen, Hilden, Germany) digestion was included prior to final elution. After that, an appropriate amount of ERCC spike-in mix (Life Technologies) was combined with 2 µg total RNA for extraction of the poly(A) RNA fraction using the Dynabeads mRNA DIRECT Kit (Invitrogen, Carlsbad, USA). Fragmentation and construction of the strand specific whole transcriptome library was done using the Ion Total RNA‐Seq Kit v2.0 (Life Technologies, Carlsbad, USA).

characteristic: description

text: adult

characteristic: developmental stage

text: Borrelia duttonii-infected

characteristic: disease

characteristic: individual

text: Ornithodoros moubata

characteristic: organism

text: Ornithodoros moubata

text: midgut

characteristic: organism part

text: Ornithodoros moubata

text: female

characteristic: sex

text: engorged

characteristic: stimulus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Diagnostic Virology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11507:infected_engorged_2_lib03359

text: ArrayExpress

characteristic: broker name

text: adult

text: Borrelia duttonii-infected

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: engorged


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11507:infected_engorged_3_lib03360

characteristic: Submitter Id

text: ArrayExpress

text: adult

text: Borrelia duttonii-infected

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: engorged


text: public

text: E-MTAB-11507:non-infected_engorged_1_lib03355

text: ArrayExpress

characteristic: description

text: adult

characteristic: developmental stage

characteristic: individual

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: engorged


text: public

text: E-MTAB-11507:non-infected_engorged_2_lib03356

text: ArrayExpress

text: adult

text: Ornithodoros moubata

characteristic: organism

text: Ornithodoros moubata

text: midgut

characteristic: organism part

text: Ornithodoros moubata

text: female

characteristic: sex

text: engorged


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11507:non-infected_engorged_3_lib03357

text: ArrayExpress

text: adult

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: engorged

characteristic: stimulus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11507:non-infected_unfed_1_lib03352

text: ArrayExpress

text: adult

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: unfed


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11507:non-infected_unfed_2_lib03353

text: ArrayExpress

characteristic: broker name

text: adult

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: unfed


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11507:non-infected_unfed_3_lib03354

text: ArrayExpress

text: adult

text: Ornithodoros moubata

text: Ornithodoros moubata

text: midgut

text: Ornithodoros moubata

text: female

text: unfed


text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

text: University of Tartu KoroGenoEST3 consortium, Estonia

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: isolation source non-host-associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance

characteristic: title


text: University of Tartu, Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

text: diseased

text: Homo sapiens

text: male

text: host subject id

characteristic: host subject id

characteristic: isolate


text: University of Tartu, Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

text: human

text: diseased

text: Homo sapiens

text: female

text: host subject id

characteristic: isolation source non-host-associated

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EDINBURGH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF EDINBURGH

text: scarce swallowtail

characteristic: common name

text: Imago

characteristic: description

text: France

text: Le Moulin de Bertrand, Saint-Martin-de-Londres, Montpellier

characteristic: geographic location (region and locality)

text: Iphiclides podalirius

text: Iphiclides podalirius

text: Male

characteristic: sex


text: RWTH Aachen University Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:RWTH Aachen University Hospital

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Adlercreutzia_muris_DSM110078 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Adlercreutzia muris

text: Enriched cultured diversity of the mouse gut microbiota for custom-made synthetic communities

characteristic: project name

text: Adlercreutzia muris

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Adlercreutzia_muris_DSM110078


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Genome of pure isolate Bacillus_licheniformis_DSM111625 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Bacillus licheniformis

characteristic: organism

text: Bacillus licheniformis

text: Illumina NextSeq500

text: Assembly for Bacillus_licheniformis_DSM111625

characteristic: title


text: RWTH Aachen University Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Bacteroides_acidifaciens_DSM111135 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Bacteroides acidifaciens

text: Bacteroides acidifaciens

text: Illumina NextSeq500

text: Assembly for Bacteroides_acidifaciens_DSM111135


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RWTH Aachen University Hospital

text: public

text: Genome of pure isolate Bacteroides_uniformis_DSM110080 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Bacteroides uniformis

characteristic: project name

text: Bacteroides uniformis

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Bacteroides_uniformis_DSM110080


characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Bacteroides_xylanisolvens_DSM110079 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Bacteroides xylanisolvens

characteristic: organism

text: Bacteroides xylanisolvens

text: Illumina NextSeq500

text: Assembly for Bacteroides_xylanisolvens_DSM110079

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Bifidobacterium_globosum_DSM105315 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Bifidobacterium pseudolongum subsp. globosum

text: Illumina MiSeq

text: Assembly for Bifidobacterium_globosum_DSM105315


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Clostridium_butyricum_DSM107392 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Clostridium butyricum

characteristic: project name

text: Clostridium butyricum

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Clostridium_butyricum_DSM107392


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Enterococcus_avium_DSM106040 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Enterococcus avium

characteristic: organism

text: Enterococcus avium

text: Illumina MiSeq

text: Assembly for Enterococcus_avium_DSM106040

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Enterococcus_faecalis_DSM106192 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Enterococcus faecalis

text: Enriched cultured diversity of the mouse gut microbiota for custom-made synthetic communities

text: Enterococcus faecalis

text: Illumina MiSeq

text: Assembly for Enterococcus_faecalis_DSM106192


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Enterococcus_faecalis_DSM110077 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Enterococcus faecalis

characteristic: project name

text: Enterococcus faecalis

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Enterococcus_faecalis_DSM110077


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Enterococcus_faecalis_DSM111623 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: Illumina NextSeq500

text: Assembly for Enterococcus_faecalis_DSM111623

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Enterococcus_gallinarum_DSM106191 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Enterococcus gallinarum

text: Enterococcus gallinarum

text: Illumina MiSeq

text: Assembly for Enterococcus_gallinarum_DSM106191


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Enterococcus_gallinarum_DSM111134 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Enterococcus gallinarum

characteristic: project name

text: Enterococcus gallinarum

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Enterococcus_gallinarum_DSM111134


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112109 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112109

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112110 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112110


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Escherichia_coli_DSM112111 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Escherichia_coli_DSM112111


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112112 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112112

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112113 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112113


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Escherichia_coli_DSM112114 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Escherichia_coli_DSM112114


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112115 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112115

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112116 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Enriched cultured diversity of the mouse gut microbiota for custom-made synthetic communities

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112116


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Escherichia_coli_DSM112117 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Escherichia_coli_DSM112117


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112118 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112118

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112119 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112119


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Escherichia_coli_DSM112120 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Escherichia_coli_DSM112120


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112121 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112121

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112122 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112122


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Escherichia_coli_DSM112123 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Escherichia_coli_DSM112123


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112124 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112124

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112125 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112125


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Escherichia_coli_DSM112126 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Escherichia_coli_DSM112126


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Escherichia_coli_DSM112127 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112127

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Escherichia_coli_DSM112128 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Escherichia coli

text: Escherichia coli

text: Illumina NextSeq500

text: Assembly for Escherichia_coli_DSM112128


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Faecalibaculum_rodentium_DSM110083 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Faecalibaculum rodentium

characteristic: project name

text: Faecalibaculum rodentium

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Faecalibaculum_rodentium_DSM110083


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Hungatella_effluvii_DSM107394 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Hungatella effluvii

characteristic: organism

text: Hungatella effluvii

text: Illumina NextSeq500

text: Assembly for Hungatella_effluvii_DSM107394

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Kosakonia_cowanii_DSM111930 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Kosakonia cowanii

text: Enriched cultured diversity of the mouse gut microbiota for custom-made synthetic communities

text: Kosakonia cowanii

text: Illumina NextSeq500

text: Assembly for Kosakonia_cowanii_DSM111930


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Lactobacillus_intestinalis_DSM107393 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Lactobacillus intestinalis

characteristic: project name

text: Lactobacillus intestinalis

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Lactobacillus_intestinalis_DSM107393


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Lactococcus_lactis_DSM110082 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Lactococcus lactis

characteristic: organism

text: Lactococcus lactis

text: Illumina NextSeq500

text: Assembly for Lactococcus_lactis_DSM110082

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Lactococcus_petauri_DSM109777 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Lactococcus petauri

text: Lactococcus petauri

text: Illumina NextSeq500

text: Assembly for Lactococcus_petauri_DSM109777


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Limosilactobacillus_antri_DSM106038 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Limosilactobacillus antri

characteristic: project name

text: Limosilactobacillus antri

text: Illumina MiSeq

characteristic: sequencing method

text: Assembly for Limosilactobacillus_antri_DSM106038


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Limosilactobacillus_antri_DSM110087 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Limosilactobacillus antri

characteristic: organism

text: Limosilactobacillus antri

text: Illumina NextSeq500

text: Assembly for Limosilactobacillus_antri_DSM110087

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Limosilactobacillus_urinaemulieris_DSM106190 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Limosilactobacillus urinaemulieris

text: Limosilactobacillus urinaemulieris

text: Illumina MiSeq

text: Assembly for Limosilactobacillus_urinaemulieris_DSM106190


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Mucispirillum_schaedleri_JCM39204 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Mucispirillum schaedleri

characteristic: project name

text: Mucispirillum schaedleri

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Mucispirillum_schaedleri_JCM39204


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Mucispirillum_schaedleri_JCM39205 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Mucispirillum schaedleri

characteristic: organism

text: Mucispirillum schaedleri

text: Illumina NextSeq500

text: Assembly for Mucispirillum_schaedleri_JCM39205

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Mucispirillum_schaedleri_JCM39206 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Mucispirillum schaedleri

text: Enriched cultured diversity of the mouse gut microbiota for custom-made synthetic communities

text: Mucispirillum schaedleri

text: Illumina NextSeq500

text: Assembly for Mucispirillum_schaedleri_JCM39206


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Mucispirillum_schaedleri_DSM104751 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Mucispirillum schaedleri

characteristic: project name

text: Mucispirillum schaedleri

text: PacBio

characteristic: sequencing method

text: Full genome of Mucispirillum_schaedleri_DSM104751


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Parabacteroides_distasonis_DSM111137 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Parabacteroides distasonis

characteristic: organism

text: Parabacteroides distasonis

text: Illumina NextSeq500

text: Assembly for Parabacteroides_distasonis_DSM111137

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Parabacteroides_goldsteinii_DSM111136 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Parabacteroides goldsteinii

text: Parabacteroides goldsteinii

text: Illumina NextSeq500

text: Assembly for Parabacteroides_goldsteinii_DSM111136


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Phocaeicola_sartorii_DSM110081 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Phocaeicola sartorii

characteristic: project name

text: Phocaeicola sartorii

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Phocaeicola_sartorii_DSM110081


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Genome of pure isolate Streptococcus_acidominimus_DSM108490 cultured from mouse cecal content

characteristic: description

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: single amplified genome

text: Streptococcus acidominimus

characteristic: organism

text: Streptococcus acidominimus

text: Illumina NextSeq500

text: Assembly for Streptococcus_acidominimus_DSM108490

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RWTH Aachen University Hospital

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Genome of pure isolate Streptococcus_thoraltensis_DSM110086 cultured from mouse cecal content

text: mouse gastrointestinal tract

characteristic: environment (biome)

text: mouse intestine

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

text: host-associated

text: single amplified genome

text: Streptococcus thoraltensis

text: Streptococcus thoraltensis

text: Illumina NextSeq500

text: Assembly for Streptococcus_thoraltensis_DSM110086


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RWTH Aachen University Hospital

characteristic: INSDC center name

text: public

text: Genome of pure isolate Yersinia_enterocolitica_DSM110076 cultured from mouse cecal content

text: mouse gastrointestinal tract

text: mouse intestine

text: gut content

text: Germany

characteristic: geographic location (longitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: single amplified genome

characteristic: investigation type

text: Yersinia enterocolitica

characteristic: project name

text: Yersinia enterocolitica

text: Illumina NextSeq500

characteristic: sequencing method

text: Assembly for Yersinia_enterocolitica_DSM110076


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: collection date

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human

text: diseased

text: Homo sapiens

text: female

text: host subject id


text: University of Tartu, Estonia

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: isolation source non-host-associated

characteristic: organism

characteristic: sample capture status

characteristic: title


text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab


text: public

characteristic: INSDC status

tag: Namespace:Uppsala University, Department of Medical Sciences, Molecular Epidemiology

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: feces

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: Human gut metagenomes of SCAPIS Uppsala and Malmo

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Uppsala University, Department of Medical Sciences, Molecular Epidemiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: feces

text: feces

text: feces

text: Sweden

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: Illumina NovaSeq 6000


text: University clinic Duesseldorf

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University clinic Duesseldorf

characteristic: INSDC center name

text: public

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: organism

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Other

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Other


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collected by

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa, Gauteng

characteristic: geographic location

text: Human, CSF

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

characteristic: collection date

text: Consortia dominated by Gammaproteobacteria isolated from a denitrifying benzene-degrading enrichment culture and their capacity to mineralize benzene

text: anthropogenic terrestrial biome

characteristic: environment (biome)

text: aquifer

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

text: Community shift of a mixed culture during benzene degradation under nitrate reducing conditions

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina

characteristic: sequencing method

text: Community fed with labeled benzene and nitrate


characteristic: External Id

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: anthropogenic terrestrial biome

text: aquifer

text: sediment

text: Germany

text: metagenome

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Bari

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: FRANCESCO MASTROTOTARO

characteristic: collected by

text: UNIVERSITY OF BARI

characteristic: collecting institution

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Apulia | Souther Adriatic Sea | near Barletta

characteristic: geographic location (region and locality)

text: sandy bottom populated by Cymodocea nodosa

characteristic: habitat

text: FRANCESCO MASTROTOTARO

characteristic: identified by

text: UNIVERISTY OF BARI

text: adult

characteristic: lifestage

text: Botryllus gaiae

text: WHOLE ORGANISM

characteristic: organism part

text: ERGA

text: CARMELA GISSI

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

text: UNIVERSITY OF BARI

characteristic: sample coordinator affiliation

text: Botryllus gaiae

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: ERGA CP GR 01

characteristic: specimen id

characteristic: specimen voucher

text: 523d7635-799d-407b-8e75-eb4a3407b623-ERGA-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Bari

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: FRANCESCO MASTROTOTARO

characteristic: collected by

text: UNIVERSITY OF BARI

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: FRANCESCO MASTROTOTARO

text: UNIVERISTY OF BARI

text: adult

text: Botryllus gaiae

characteristic: organism

text: WHOLE ORGANISM

text: ERGA

characteristic: project name

text: CARMELA GISSI

text: UNIVERSITY OF BARI

characteristic: sample same as

text: Botryllus gaiae

text: HERMAPHRODITE MONOECIOUS

text: ERGA CP GR 01

text: 3d721fb2-f5d6-4fec-9662-fb0b623be441-erga

characteristic: title


E-MTAB-11511:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH

text: public

text: E-MTAB-11511:Sample 1

tag: Namespace:ETH ZURICH

unit: week

characteristic: age

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: CD8 T cells were isolated via FACS seven days post addition of tamoxifen. We employed intracranial (i.c.) infection of adult GFAP:GP mice with rLCMV-GP33 as an experimental model of transient viral infection of the brain to generate GP33-specific tissue-resident memory CD8+ T cells (TRM). Cross-reactivity of TRM with a CNS-restricted self-antigen was modeled by the TAM-inducible expression of LCMV glycoprotein (GP) antigens in a CNS-restricted cell population (astrocytes). For depletion of circulating CD8+ T cells or CD4+ T cells, mice were treated intraperitoneally twice over a 3 days interval with 200 μg of rat-anti-mouse-CD8α-depleting antibody (BioXCell, BE0117), 250 μg of rat-anti-mouse-CD4 -depleting antibody (home-made, clone YTS191) or isotype control (BioXCell, BE0090).Anti-CD8 was administered 7 and 4 days before start of TAM while anti-CD4 was administered 4 and 1 day prior start of TAM. For relapse experiments, mice were treated intraperitoneally with 200 μg of mouse-anti-mouse-CD8α -depleting antibody (Ab00166-2.0, Absolute Antibody) or isotype control (Ab00166-2.3, Absolute Antibody) 7 and 4 days before each TAM administration. According to 10x 3' protocol According to 10x 3' protocol

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: CD4 and CD8 depletion via antibody before TAM induction

characteristic: stimulus

characteristic: strain

text: Sample 1


E-MTAB-11511:Sample 2

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11511:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: Sample 2


E-MTAB-11511:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH

text: public

text: E-MTAB-11511:Sample 3

characteristic: age

text: ArrayExpress

text: T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: CD8 depletion via antibody before TAM induction

text: Sample 3

characteristic: title


E-MTAB-11511:Sample 4

text: ETH ZURICH

text: public

text: E-MTAB-11511:Sample 4

text: ArrayExpress

text: T cell

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: stimulus

characteristic: strain

text: Sample 4


E-MTAB-11511:Sample 5

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11511:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: Stop-GPflox

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: StopGP - no TAM reactivation

text: Sample 5


E-MTAB-11511:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH

text: public

text: E-MTAB-11511:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

characteristic: cell type

text: house mouse

text: adult

text: Stop-GPflox

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: StopGP - no TAM reactivation

text: Sample 6


characteristic: GISAID Accession ID

text: public

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6889-2110/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6933-2319/2022


characteristic: GISAID Accession ID

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6934-2320/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6935-2321/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6842-5711/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6843-5712/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6844-5713/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6845-5722/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6846-5724/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6847-5725/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6848-9913/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6849-9914/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6850-9924/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Nicole Liechti, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6851-9940/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6852-9947/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6853-9949/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6854-9950/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6855-9951/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6856-9956/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6857-9971/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6858-9975/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-6859-9976/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-6860-9977/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

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