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text: VD

text: Human

characteristic: host common name

text: restricted access

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text: Homo sapiens

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text: restricted access

characteristic: host sex

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text: hCoV-19/Switzerland/VD-CHUV-GEN10640/2022

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

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text: public

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text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN10642/2022

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10643/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

characteristic: host common name

text: restricted access

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text: Homo sapiens

characteristic: host scientific name

text: restricted access

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text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10644/2022

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: public

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN10645/2022

characteristic: isolate

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characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

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characteristic: SRA accession

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10646/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

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text: Human

characteristic: host common name

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text: Homo sapiens

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text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10647/2022

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

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text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN10648/2022

characteristic: isolate

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E-MTAB-11515:Control 24hrs 01

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11515:Control 24hrs 01

tag: Namespace:Department of Biomedical Science, Advanced Medical & Dental Institute, Universiti Sains Malaysia,  Bertam, Kepala Batas, Pulau Pinang 13200, Malaysia

text: ArrayExpress

characteristic: broker name

text: brain microvascular endothelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: hBME cell were infected with T. gondii RH tachyzoite at MOI of 2 for 6, 24 and 48 hours. Human brain microvascular endothelial cells (hBMECs) were grown in Gibco® Roswell Park Memorial Institute (RPMI) 1640 media (Thermo Fisher Scientific, Wal-tham, MA, USA) as described previously in Elsheikha, H.M.E., N.A.; Chan, K.L.A.; Brignell, C.; Harun, M.S.R.; Wehbe, K.; Cinque, G. Label-free characterization of biochemical changes within human cells under parasite attack using synchrotron based micro-FTIR. Anal. Methods 2019, 11, 2518-2530.. https://doi.org/10.1039/C8AY02777C. hBME cell were infected with T. gondii RH tachyzoite at MOI of 2 for 6, 24 and 48 hours. Cells were lysed and total RNA were extracted using Qiagen RNeasy Plus Mini kit according manufacturer protocol. RNA quality were assesed with Agilent 2100 Bioanalyser Messenger RNA (mRNA) libraries were prepared using Illumina’s TruSeq Stranded mRNA HT Kit [RS-122-2103] according manufacturer protocol.

characteristic: description

text: neonate

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

characteristic: organism part

text: Homo sapiens

text: Control 24hrs 01


E-MTAB-11515:Control 24hrs 02

text: Department of Biomedical Science, Advanced Medical & Dental Institute, Universiti Sains Malaysia, Bertam, Kepala Batas, Pulau Pinang 13200, Malaysia

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

text: E-MTAB-11515:Control 24hrs 02

characteristic: Submitter Id

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Control 24hrs 02

characteristic: title


E-MTAB-11515:Control 48hrs 01

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11515:Control 48hrs 01

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Control 48hrs 01


E-MTAB-11515:Control 48hrs 02

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-11515:Control 48hrs 02

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Control 48hrs 02


E-MTAB-11515:Control 6hrs 01

text: public

characteristic: SRA accession

text: E-MTAB-11515:Control 6hrs 01

text: ArrayExpress

characteristic: broker name

text: brain microvascular endothelial cell

characteristic: cell type

text: human

text: neonate

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Control 6hrs 01


E-MTAB-11515:Control 6hrs 02

text: public

text: E-MTAB-11515:Control 6hrs 02

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

characteristic: common name

characteristic: description

text: neonate

characteristic: developmental stage

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Control 6hrs 02


E-MTAB-11515:Infected 24hrs 01

characteristic: INSDC center name

text: public

text: E-MTAB-11515:Infected 24hrs 01

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

characteristic: genotype

text: Toxoplasma gondii RH

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

characteristic: organism part

text: Homo sapiens

text: Infected 24hrs 01


E-MTAB-11515:Infected 24hrs 02

characteristic: INSDC first public

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text: public

text: E-MTAB-11515:Infected 24hrs 02

characteristic: Submitter Id

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

text: Toxoplasma gondii RH

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Infected 24hrs 02

characteristic: title


E-MTAB-11515:Infected 48hrs 01

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11515:Infected 48hrs 01

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

text: Toxoplasma gondii RH

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Infected 48hrs 01


E-MTAB-11515:Infected 48hrs 02

characteristic: External Id

text: public

characteristic: INSDC status

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text: E-MTAB-11515:Infected 48hrs 02

text: ArrayExpress

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text: brain microvascular endothelial cell

text: human

text: neonate

text: wild type genotype

text: Toxoplasma gondii RH

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Infected 48hrs 02


E-MTAB-11515:Infected 6hrs 01

text: public

text: E-MTAB-11515:Infected 6hrs 01

text: ArrayExpress

text: brain microvascular endothelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: neonate

characteristic: developmental stage

text: wild type genotype

text: Toxoplasma gondii RH

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

text: Homo sapiens

text: Infected 6hrs 01


E-MTAB-11515:Infected 6hrs 02

characteristic: INSDC center name

text: public

text: E-MTAB-11515:Infected 6hrs 02

text: ArrayExpress

text: brain microvascular endothelial cell

text: human

text: neonate

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characteristic: genotype

text: Toxoplasma gondii RH

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: brain blood vessel

characteristic: organism part

text: Homo sapiens

text: Infected 6hrs 02


characteristic: GISAID Accession ID

characteristic: INSDC first public

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text: public

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

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text: Homo sapiens

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text: hCoV-19/Switzerland/VD-CHUV-GEN10650/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

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characteristic: ENA-CHECKLIST

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text: hCoV-19/Switzerland/VD-CHUV-GEN10651/2022

characteristic: organism


characteristic: INSDC first public

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text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

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text: Switzerland

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text: restricted access

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text: Homo sapiens

text: restricted access

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text: hCoV-19/Switzerland/VD-CHUV-GEN10652/2022


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

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text: hCoV-19/Switzerland/VD-CHUV-GEN10653/2022

characteristic: isolate

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characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

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text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Switzerland

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text: Human

text: restricted access

text: Homo sapiens

text: restricted access

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text: hCoV-19/Switzerland/VD-CHUV-GEN10654/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

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text: Switzerland

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text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

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text: hCoV-19/Switzerland/VD-CHUV-GEN10655/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

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text: Human

text: restricted access

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characteristic: host scientific name

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characteristic: isolate

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characteristic: ENA-CHECKLIST

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text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: public

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text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10658/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10659/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

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text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

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text: hCoV-19/Switzerland/VD-CHUV-GEN10660/2022

characteristic: isolate

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characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10661/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10662/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

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text: Human

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text: Homo sapiens

characteristic: host scientific name

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text: hCoV-19/Switzerland/VD-CHUV-GEN10663/2022

characteristic: isolate

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10665/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

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text: Homo sapiens

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text: hCoV-19/Switzerland/VD-CHUV-GEN10666/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

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characteristic: host scientific name

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text: hCoV-19/Switzerland/VD-CHUV-GEN10667/2022

characteristic: isolate

text: active surveillance in response to outbreak

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text: public

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text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Switzerland

text: VD

text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10668/2022

characteristic: organism


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10669/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

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characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN10670/2022

characteristic: isolate

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characteristic: title


characteristic: ENA-CHECKLIST

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text: public

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characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10671/2022

characteristic: organism


characteristic: GISAID Accession ID

text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: INSDC center name

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text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

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characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN10673/2022


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

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text: CHUV, CH-1011 Lausanne, Switzerland

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text: Human

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text: Homo sapiens

characteristic: host scientific name

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text: hCoV-19/Switzerland/VD-CHUV-GEN10674/2022

characteristic: isolate

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characteristic: GISAID Accession ID

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characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

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text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

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text: hCoV-19/Switzerland/VD-CHUV-GEN10675/2022

characteristic: organism


characteristic: ENA-CHECKLIST

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characteristic: collection date

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