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tag: Namespace:Max Planck Institute for the Science of Human History

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text: Protocols: For each sample, 25 mg of plant tissue were randomly collected from the test vessel into a tube. After adding the lysis matrix (¼ Ceramic Sphere, MP Biomedicals), the lysis was performed according to the manufacturer’s protocol of the RapidPURE RNA Plant Kit (MP Biomedicals Illkirch, France). Homogenization was conducted at 5 m/s for 60 s with FastPrep-24© 5G (MP Biomedicals Illkirch, France) at room temperature. One week before test start, a pre-culture of Lemna minor was auxenically prepared from a stock culture in Steinberg medium according to OECD TG 221. Plants were kept in a growth chamber at 24±2°C and under continuous light (85-135 µE∙m-2∙s-1). Atorvastatin-calcium was purchased from abcr (Karlsruhe, Germany). Test solutions of EC5 and EC20 (% inhibition of growth (e.g. 50 %) is determined and expressed as the ECx e.g. EC50) determined in preliminary experiments according to OECD TG 221, were prepared with Steinberg medium at a pH 5.5±0.2. 150 mL of each test solution were transferred into three test vessels (replicates) and analogously 150 mL of pure Steinberg medium were used as control samples. Four healthy plants with three fronds each were transferred from the pre-culture to the test vessels. Incubation was conducted according to the conditions described in “Growth protocol” under random arrangement for 3 days. Total RNA and protein were extracted according to the RapidPURE Plant Kit (MP Biomedicals Illkirch, France). RNA quantification (RNA>100 ng/µL) was performed using Nanodrop 2000 spectrophotometer (Thermo Scientific), and quality control (RIN>7.0) was conducted using the 2100 Bioanalyzer (Agilent Technologies). The samples were stored at -80°C until mRNA sequencing. cDNA libraries were prepared from mRNA that was purified through PolyA selection using the TruSeq RNA Library Prep Kit v2 (Illumina). Libraries were validated using a Fragment Analyzer system (Agilent, Santa Clara, USA) before sequencing.

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: growth stage

text: wild type genotype

text: Lemna minor

text: Lemna minor

text: whole plant

text: Lemna minor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: growth stage

text: wild type genotype

text: Lemna minor

characteristic: organism

text: Lemna minor

text: whole plant

text: Lemna minor

characteristic: title

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: Protocols: For each sample, 25 mg of plant tissue were randomly collected from the test vessel into a tube. After adding the lysis matrix (¼ Ceramic Sphere, MP Biomedicals), the lysis was performed according to the manufacturer’s protocol of the RapidPURE RNA Plant Kit (MP Biomedicals Illkirch, France). Homogenization was conducted at 5 m/s for 60 s with FastPrep-24© 5G (MP Biomedicals Illkirch, France) at room temperature. One week before test start, a pre-culture of Lemna minor was auxenically prepared from a stock culture in Steinberg medium according to OECD TG 221. Plants were kept in a growth chamber at 24±2°C and under continuous light (85-135 µE∙m-2∙s-1). Bentazon was purchased from Sigma Aldrich (St. Louis). Test solutions of EC5 and EC20 (% inhibition of growth (e.g. 50 %) is determined and expressed as the ECx e.g. EC50), determined in preliminary experiments according to OECD TG 221, were prepared with Steinberg medium at a pH 5.5±0.2. 150 mL of each test solution were transferred into three test vessels (replicates) and analogously 150 mL of pure Steinberg medium were used as control samples. Four healthy plants with three fronds each were transferred from the pre-culture to the test vessels. Incubation was conducted according to the conditions described in “Growth protocol” under random arrangement for 3 days. Total RNA and protein were extracted according to the RapidPURE Plant Kit (MP Biomedicals Illkirch, France). RNA quantification (RNA>100 ng/µL) was performed using Nanodrop 2000 spectrophotometer (Thermo Scientific), and quality control (RIN>7.0) was conducted using the 2100 Bioanalyzer (Agilent Technologies). The samples were stored at -80°C until mRNA sequencing. cDNA libraries were prepared from mRNA that was purified through PolyA selection using the TruSeq RNA Library Prep Kit v2 (Illumina). Libraries were validated using a Fragment Analyzer system (Agilent, Santa Clara, USA) before sequencing.

text: growth stage

text: wild type genotype

text: Lemna minor

text: Lemna minor

text: whole plant

text: Lemna minor


text: public

text: ArrayExpress

characteristic: broker name

characteristic: description

text: growth stage

characteristic: developmental stage

characteristic: extraction date

text: wild type genotype

characteristic: genotype

text: Lemna minor

text: Lemna minor

text: whole plant

text: Lemna minor


text: Zhang

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: stool

text: gut metagenome

text: gut metagenome

text: gut


Infant

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Infant

tag: Namespace:Maastricht University - Medical Microbiology

characteristic: Submitter Id

text: Infant feces

text: human feces metagenome

text: human feces metagenome

text: 16S rRNA V3 amplicon sequencing of infant feces


text: INSTITUTE OF EVOLUTIONARY BIOLOGY

text: public

tag: Namespace:INSTITUTE OF EVOLUTIONARY BIOLOGY

text: Figitid parasitoid�

text: Parnips nigripes

characteristic: organism

text: Parnips nigripes

characteristic: title


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: malaria parasite P. vivax

characteristic: common name

text: Plasmodium vivax

text: Plasmodium vivax

characteristic: subject id


text: Anopheles gambiae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: NTNU

text: public

characteristic: collection date

text: Intestine extracted from D.magna located in an aquarium

characteristic: description

text: D.magna

characteristic: environment (biome)

text: D.magna

characteristic: environment (feature)

text: D.magna

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: gut metagenome

text: Bacteria community composition inside and around D.magna

characteristic: project name

text: gut metagenome

text: Ilumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Intestine extracted from D.magna located in a glass

text: D.magna

text: D.magna

text: D.magna

text: Norway

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Ilumina

characteristic: title


text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

characteristic: description

text: Blank

characteristic: environment (biome)

text: Blank

characteristic: environment (feature)

text: Blank

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: gut metagenome

text: gut metagenome

text: Ilumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NTNU

text: public

text: Water from the habitat (glass)

text: Marine water

text: Marine water

text: Marine water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: freshwater metagenome

characteristic: project name

text: freshwater metagenome

text: Ilumina

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Negative control (extraction)

text: D.magna

text: D.magna

text: D.magna

text: Norway

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Ilumina

characteristic: title


text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Algae feed

characteristic: description

text: Marine water

characteristic: environment (biome)

text: Marine water

characteristic: environment (feature)

text: Marine water

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: gut metagenome

text: gut metagenome

text: Ilumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NTNU

text: public

text: Algae feed

text: Algea

text: Algea

text: Algea

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: gut metagenome

characteristic: project name

text: gut metagenome

text: Ilumina

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Water from the habitat (glass)

text: Marine water

text: Marine water

text: Marine water

text: Norway

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Ilumina

characteristic: title


text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Water from the habitat (aquarium)

characteristic: description

text: Marine water

characteristic: environment (biome)

text: Marine water

characteristic: environment (feature)

text: Marine water

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: freshwater metagenome

text: freshwater metagenome

text: Ilumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NTNU

text: public

text: Marine water

text: Marine water

text: Marine water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: gut metagenome

characteristic: project name

text: gut metagenome

text: Ilumina

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Algea

text: Algea

text: Algea

text: Norway

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Ilumina

characteristic: title


text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Negative control (extraction)

characteristic: description

text: Blank

characteristic: environment (biome)

text: Blank

characteristic: environment (feature)

text: Blank

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: gut metagenome

text: gut metagenome

text: Ilumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NTNU

text: public

text: Negative control (preparation for PCR)

text: Blank

text: Blank

text: Blank

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: gut metagenome

characteristic: project name

text: gut metagenome

text: Ilumina

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Negative control (preparation for PCR)

text: Marine water

text: Marine water

text: Marine water

text: Norway

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Ilumina

characteristic: title


text: UNIVERSITY OF OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: Ecoli CFT073 isolate ONT sequenced with r10.3 using model Rerio

characteristic: description

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r10.3 using model SUP

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r9.4.1 using model HAC

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r9.4.1 using model SUP

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r10.4 using model HAC

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r10.4 using model SUP

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r10.4 using model DUPLEX

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Ecoli CFT073 isolate ONT sequenced with r10.4 using model DUPLEX+SIMPLEX

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.3 using model Rerio

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.3 using model SUP

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r9.4.1 using model HAC

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r9.4.1 using model SUP

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.4 using model HAC

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.4 using model SUP

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.4 using model DUPLEX

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: Klebsiella pneumoniae MGH 78578 isolate ONT sequenced with r10.4 using model DUPLEX+SIMPLEX

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r10.3 using model Rerio

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r10.3 using model SUP

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r9.4.1 using model HAC

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r9.4.1 using model SUP

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r10.4 using model HAC

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r10.4 using model SUP

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r10.4 using model DUPLEX

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: MRSA 252 isolate ONT sequenced with r10.4 using model DUPLEX+SIMPLEX

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r10.3 using model SUP

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r9.4.1 using model HAC

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r9.4.1 using model SUP

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r10.4 using model HAC

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r10.4 using model SUP

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r10.4 using model DUPLEX

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: UNIVERSITY OF OXFORD

text: public

text: Pseudomonas aeruginosa PAO1 isolate ONT sequenced with r10.4 using model DUPLEX+SIMPLEX

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: public

tag: Namespace:ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: chicken

characteristic: common name

text: Enteroid culture replicate 1, 24 hrs, Technical replicate 1

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 1, 24 hrs, technical replicate 1


text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: public

text: chicken

text: Enteroid culture replicate 1, 96 hrs, Technical replicate 1

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 1, 92 hrs, technical replicate 1


text: public

text: chicken

text: Enteroid culture replicate 1, 24 hrs, Technical replicate 2

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 1, 24 hrs, technical replicate 2


text: public

text: chicken

text: Enteroid culture replicate 1, 96 hrs, Technical replicate 2

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 1, 92 hrs, technical replicate 2


text: public

text: chicken

text: Enteroid culture replicate 2, 24 hrs, Technical replicate 1

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 2, 24 hrs, technical replicate 1


text: public

text: chicken

text: Enteroid culture replicate 2, 96 hrs, Technical replicate 1

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 2, 92 hrs, technical replicate 1


text: public

text: chicken

text: Enteroid culture replicate 2, 24 hrs, Technical replicate 2

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 2, 24 hrs, technical replicate 2


text: public

text: chicken

text: Enteroid culture replicate 2, 96 hrs, Technical replicate 2

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 2, 92 hrs, technical replicate 2


text: public

text: chicken

text: Enteroid culture replicate 3, 24 hrs, Technical replicate 1

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 3, 24 hrs, technical replicate 1


text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: public

text: chicken

text: Enteroid culture replicate 3, 96 hrs, Technical replicate 1

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 3, 92 hrs, technical replicate 1


text: public

text: chicken

text: Enteroid culture replicate 3, 24 hrs, Technical replicate 2

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 3, 24 hrs, technical replicate 2


text: public

text: chicken

text: Enteroid culture replicate 3, 96 hrs, Technical replicate 2

text: Gallus gallus

text: Gallus gallus

text: Chicken (Gallus gallus) enteroid culture 3, 92 hrs, technical replicate 2


text: DTU-GE

text: public

text: DTU-GE

characteristic: broker name

text: Technical University of Denmark, Food Institute

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Australia

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: sewage

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: Yes

text: Pakistan

text: No

text: sewage

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Yes

text: Greece

text: No

text: sewage

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

characteristic: broker name

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Malaysia

text: No

text: sewage

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Yes

text: China

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: sewage

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Yes

text: Cameroon

text: No

text: sewage

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: Yes

text: USA

text: No

text: sewage

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Yes

text: Canada

text: No

text: sewage

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

characteristic: broker name

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Ecuador

text: No

text: sewage

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Yes

text: Tanzania

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: sewage

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MARTIN-LUTHER-UNIVERSITY HALLE-WITTENBERG, INSTITU

characteristic: INSDC last update

text: public

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Karolinska Institutet

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Karolinska Institutet

characteristic: Submitter Id

characteristic: cell line

text: Neonatal foreskin fibroblast

characteristic: cell type

text: human

text: Human genomic DNA from cell line Hs27 (ATCC CRL-1634)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Male

characteristic: sex

text: Skin

characteristic: tissue type

text: Hs27 gDNA


text: Karolinska Institutet

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: B-Lymphocyte

text: human

text: Human genomic DNA from subject NA12814 (NIGMS Human Genetic Cell Repository)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Blood

text: NA12814 gDNA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Karolinska Institutet

text: public

text: B-Lymphocyte

text: human

text: Mix of human genomic DNA from subjects NA12814 and NA12751 (NIGMS Human Genetic Cell Repository)

text: Homo sapiens

text: Homo sapiens

text: Blood

text: 2% NA12751 gDNA and 98% NA12814 gDNA (VAF 1%)


text: Karolinska Institutet

characteristic: INSDC last update

text: public

text: B-Lymphocyte

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Blood

text: 0.2% NA12751 gDNA and 99.8% NA12814 gDNA (VAF 0.1%)


text: Karolinska Institutet

text: public

text: B-Lymphocyte

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Blood

text: 0.1% NA12751 gDNA and 99.9% NA12814 gDNA (VAF 0.05%)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Karolinska Institutet

text: public

text: B-Lymphocyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Blood

text: 0.02% NA12751 gDNA and 99.98% NA12814 gDNA (VAF 0.01%)


text: UNIVERSITY OF CAMBRDGE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF CAMBRDGE

characteristic: collection date

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: metagenome

text: Microplastics bacteria leachate

characteristic: project name

text: metagenome

text: MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRDGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: description

text: lake

text: water

text: Norway

text: metagenome

characteristic: organism

text: Microplastics bacteria leachate

text: metagenome

text: MiSeq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRDGE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: metagenome

text: Microplastics bacteria leachate

text: metagenome

text: MiSeq

text: water


E-MTAB-11370:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 1

tag: Namespace:University of Jyvaskyla

text: ArrayExpress

characteristic: broker name

text: Protocols: After 14 days of cultivation, 50 ml of every culture were centrifugated for 5 min (2500×g, 18 °C), after which the supernatant was discarded. Cell pellets were resuspended in 700 μl of DNA/RNA Shield™ and homogenized in BashingBead™ (0.1 & 0.5 mm) lysis tubes (Zymo Research, Irvine, CA, USA) using a TerraLyzer™ Cell Disruptor. Cryptomonas sp. was grown under phototrophic conditions, glucose suplemented phototrophic conditions and 3 different dissolved organic carbon (DOC) concentratios: 1.5, 30 and 90 mg C l−1 (see materials and methods). RNA was extracted using a Chemagic™ 360 and the Chemagic™ Viral DNA/RNA 300 Kit H96 following manufacturer’s instructions (PerkinElmer, Waltham, USA). Extracted RNA was treated with DNAse I (Thermo Fisher Scientific), purified using Zymo spin-columns and quantified using a NanoDrop (Thermo Fisher Scientific). Samples were stored at −80 °C. RNA library generation and transcriptome sequencing of the selected treatments was conducted by Novogene Co., LTD (Cambridge, UK)

text: Control

characteristic: growth condition

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

characteristic: strain

text: Sample 1


E-MTAB-11370:Sample 10

text: University of Jyvaskyla

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11370:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 10


E-MTAB-11370:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Jyvaskyla

text: public

characteristic: INSDC status

text: E-MTAB-11370:Sample 11

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

characteristic: organism

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 11

characteristic: title


E-MTAB-11370:Sample 12

text: University of Jyvaskyla

text: public

characteristic: SRA accession

text: E-MTAB-11370:Sample 12

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 12


E-MTAB-11370:Sample 13

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 13

text: ArrayExpress

text: GLU

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 13


E-MTAB-11370:Sample 14

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 14

text: ArrayExpress

text: GLU

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 14


E-MTAB-11370:Sample 15

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 15

text: ArrayExpress

text: GLU

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 15


E-MTAB-11370:Sample 2

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 2

text: ArrayExpress

text: Control

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 2


E-MTAB-11370:Sample 3

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 3

text: ArrayExpress

text: Control

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 3


E-MTAB-11370:Sample 4

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 4

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 4


E-MTAB-11370:Sample 5

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 5

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 5


E-MTAB-11370:Sample 6

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 6

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 6


E-MTAB-11370:Sample 7

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 7

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 7


E-MTAB-11370:Sample 8

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 8

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 8


E-MTAB-11370:Sample 9

text: University of Jyvaskyla

text: public

text: E-MTAB-11370:Sample 9

text: ArrayExpress

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. CPCC 336

text: Cryptomonas sp. strain CPCC 336

text: Sample 9


text: public

tag: Namespace:Pennsylvania State University/Harvard Medical School

text: human

characteristic: common name

text: Unspecified

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Pennsylvania State University/Harvard Medical School

text: public

text: human

text: Unspecified

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: UC-BERKELEY

text: public

characteristic: collection date

text: Arsenic-Impacted Human Gut Metagenome

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: Bangladesh

characteristic: geographic location (country and/or sea)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: Stop codon recoding in bacteriophages

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: JS_AP4_S146_Potentially_Complete_Lak_phage_26_23

characteristic: collection date

text: pig fecal metagenome

characteristic: description

text: pig gut

text: pig gut

text: fecal material

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: pig gut metagenome

characteristic: organism

text: Stop codon recoding in bacteriophages

text: pig gut metagenome

text: Illumina

characteristic: title


text: UC-BERKELEY

text: public

text: pig fecal metagenome

text: pig gut

characteristic: environment (biome)

text: pig gut

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

characteristic: investigation type

text: pig gut metagenome

text: Stop codon recoding in bacteriophages

characteristic: project name

text: pig gut metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: HS_AP3_S145_sc_10243_Lak_complete_trimmed_start_adj_final

characteristic: Submitter Id

text: pig fecal metagenome

text: pig gut

text: pig gut

text: fecal material

text: United Kingdom

text: host-associated

text: metagenome

text: pig gut metagenome

text: Stop codon recoding in bacteriophages

text: pig gut metagenome

text: Illumina


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: horse fecal metagenome

characteristic: description

text: horse gut

text: horse gut

text: fecal material

text: United Kingdom

text: host-associated

text: metagenome

text: horse metagenome

text: Stop codon recoding in bacteriophages

text: horse metagenome

text: Illumina


text: UC-BERKELEY

text: public

text: HS_AP3_S145_Lak-like_phage_31_24_curated

text: pig fecal metagenome

text: pig gut

characteristic: environment (biome)

text: pig gut

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: pig gut metagenome

characteristic: organism

text: Stop codon recoding in bacteriophages

text: pig gut metagenome

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UC-BERKELEY

text: public

text: JS_AP1_S143_scaffold_24016_curated_start_adj

text: pig fecal metagenome

text: pig gut

text: pig gut

text: fecal material

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

characteristic: investigation type

text: pig gut metagenome

text: Stop codon recoding in bacteriophages

characteristic: project name

text: pig gut metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: zoo-housed giant tortoise fecal metagenome

text: giant tortoise gut

text: giant tortoise gut

text: fecal material

text: United Kingdom

text: host-associated

text: metagenome

text: feces metagenome

text: Stop codon recoding in bacteriophages

text: feces metagenome

text: Illumina


text: UC-BERKELEY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: wild baboon fecal metagenome

characteristic: description

text: baboon gut

characteristic: environment (biome)

text: baboon gut

characteristic: environment (feature)

text: fecal material

text: Kenya

text: host-associated

text: metagenome

text: primate metagenome

text: Stop codon recoding in bacteriophages

text: primate metagenome

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UC-BERKELEY

text: public

text: pig fecal metagenome

text: pig gut

text: pig gut

text: fecal material

characteristic: environment (material)

text: Bangladesh

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: pig gut metagenome

characteristic: organism

text: Stop codon recoding in bacteriophages

text: pig gut metagenome

text: Illumina

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Irish Mycobacteria Reference Laboratory (IMRL)

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien

characteristic: host scientific name

text: MTB

characteristic: isolate

text: Clinical isolate

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

characteristic: assembly software

text: independent sequence (UViG)

characteristic: detection type

text: Pig Fecal material

text: Pig Fecal material

text: fecal material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Pig gut

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

text: CheckV v0.7.0, end-to-end, >=90% completeness

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: description

text: provirus (UpViG)

text: Pig Fecal material

characteristic: environment (biome)

text: Pig Fecal material

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: uncultivated viral genomes

text: Pig gut

characteristic: isolation source

text: pig gut metagenome

text: uncultured phage

characteristic: organism

text: non-segmented

text: dsDNA

text: Stop codon recoding in bacteriophages

text: uncultured phage

text: Illumina

text: metagenome (not viral targeted)

characteristic: title


characteristic: ENA-CHECKLIST

text: UC-BERKELEY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: independent sequence (UViG)

characteristic: detection type

text: Pig Fecal material

text: Pig Fecal material

text: fecal material

text: Bangladesh

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Pig gut

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: megahit

characteristic: collection date

characteristic: description

text: independent sequence (UViG)

text: Pig Fecal material

characteristic: environment (biome)

text: Pig Fecal material

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: uncultivated viral genomes

text: Pig gut

characteristic: isolation source

text: pig gut metagenome

text: uncultured phage

characteristic: organism

text: non-segmented

text: dsDNA

text: Stop codon recoding in bacteriophages

text: uncultured phage

text: Illumina

text: metagenome (not viral targeted)

characteristic: title


characteristic: ENA-CHECKLIST

text: UC-BERKELEY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: provirus (UpViG)

characteristic: detection type

text: Pig Fecal material

text: Pig Fecal material

text: fecal material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Pig gut

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: megahit

characteristic: collection date

characteristic: description

text: independent sequence (UViG)

text: Horse Fecal material

characteristic: environment (biome)

text: Horse Fecal material

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: uncultivated viral genomes

text: Horse gut

characteristic: isolation source

text: horse metagenome

text: uncultured phage

characteristic: organism

text: non-segmented

text: dsDNA

text: Stop codon recoding in bacteriophages

text: uncultured phage

text: Illumina

text: metagenome (not viral targeted)

characteristic: title


characteristic: ENA-CHECKLIST

text: UC-BERKELEY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit

characteristic: assembly software

text: provirus (UpViG)

characteristic: detection type

text: Horse Fecal material

text: Horse Fecal material

text: fecal material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Horse gut

text: horse metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: description

text: independent sequence (UViG)

text: Human Fecal material

characteristic: environment (biome)

text: Human Fecal material

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: Bangladesh

characteristic: geographic location (country and/or sea)

text: uncultivated viral genomes

text: Human gut

characteristic: isolation source

text: human gut metagenome

text: uncultured phage

characteristic: organism

text: non-segmented

text: dsDNA

text: Stop codon recoding in bacteriophages

text: uncultured phage

text: Illumina

text: metagenome (not viral targeted)

characteristic: title


characteristic: ENA-CHECKLIST

text: UC-BERKELEY

text: public

characteristic: SRA accession

text: js4906-27-4_S31_scaffold_270_1_ENA_alias

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: provirus (UpViG)

characteristic: detection type

text: Human Fecal material

text: Human Fecal material

text: fecal material

text: Bangladesh

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Human gut

text: human gut metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: js4906-23-5_S16_scaffold_179_1_ENA_alias

characteristic: collection date

characteristic: description

text: provirus (UpViG)

text: Human Fecal material

characteristic: environment (biome)

text: Human Fecal material

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: Bangladesh

characteristic: geographic location (country and/or sea)

text: uncultivated viral genomes

text: Human gut

characteristic: isolation source

text: human gut metagenome

text: uncultured phage

characteristic: organism

text: non-segmented

text: dsDNA

text: Stop codon recoding in bacteriophages

text: uncultured phage

text: Illumina

text: metagenome (not viral targeted)

characteristic: title


characteristic: ENA-CHECKLIST

text: UC-BERKELEY

text: public

characteristic: SRA accession

text: GiantTortoise_JV_1_scaffold_2614_ENA_alias

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: independent sequence (UViG)

characteristic: detection type

text: Giant Tortoise Fecal material

text: Giant Tortoise Fecal material

text: fecal material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Giant Tortoise gut

text: feces metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GiantTortoise_AD_1_scaffold_57_ENA_alias

characteristic: collection date

characteristic: description

text: independent sequence (UViG)

text: Giant Tortoise Fecal material

characteristic: environment (biome)

text: Giant Tortoise Fecal material

characteristic: environment (feature)

text: fecal material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: uncultivated viral genomes

text: Giant Tortoise gut

characteristic: isolation source

text: feces metagenome

text: uncultured phage

characteristic: organism

text: non-segmented

text: dsDNA

text: Stop codon recoding in bacteriophages

text: uncultured phage

text: Illumina

text: metagenome (not viral targeted)

characteristic: title


characteristic: ENA-CHECKLIST

text: UC-BERKELEY

text: public

characteristic: SRA accession

text: GiantTortoise_AD_1_scaffold_344_ENA_alias

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: independent sequence (UViG)

characteristic: detection type

text: Giant Tortoise Fecal material

text: Giant Tortoise Fecal material

text: fecal material

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultivated viral genomes

characteristic: investigation type

text: Giant Tortoise gut

text: feces metagenome

characteristic: metagenomic source

text: uncultured phage

text: non-segmented

characteristic: predicted genome structure

text: dsDNA

characteristic: predicted genome type

text: Stop codon recoding in bacteriophages

characteristic: project name

characteristic: sample derived from

text: uncultured phage

text: Illumina

characteristic: sequencing method

text: metagenome (not viral targeted)

characteristic: source of uvigs

characteristic: viral identification software


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC-BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GiantTortoise_AD_1_scaffold_2243_ENA_alias

characteristic: collection date

characteristic: description

text: independent sequence (UViG)

text: Giant Tortoise Fecal material

characteristic: environment (biome)

text: Giant Tortoise Fecal material

characteristic: environment (feature)

text: fecal material

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