E-MTAB-11133:Sample 8

characteristic: INSDC center name

text: public

text: E-MTAB-11133:Sample 8

text: ArrayExpress

text: human

text: ovarian cancer

text: BRCAness

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: Sample 8


E-MTAB-11133:Sample 80

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11133:Sample 80

tag: Namespace:Programma di Genomica Medica, AOU SS Giovanni di Dio e Ruggi d’Aragona Universita di Salerno, Italy

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: DNA for molecular analyses was obtained from three representative FFPE sections (8 µm). Neoplastic areas were manually microdissected to minimize contamination by normal cells and DNA was extracted using Maxwell® DNA FFPE Kit and Maxwell 16 system (Promega, Madison, USA) Infinium FFPE QC, Illumina

characteristic: description

text: ovarian cancer

characteristic: disease

text: BRCA mutated

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: Sample 80

characteristic: title


E-MTAB-11133:Sample 9

text: Programma di Genomica Medica, AOU SS Giovanni di Dio e Ruggi d’Aragona Universita di Salerno, Italy

characteristic: INSDC center name

text: public

text: E-MTAB-11133:Sample 9

text: ArrayExpress

text: human

text: ovarian cancer

text: BRCAness

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: Sample 9


E-MTAB-11136:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11136:Sample 1

tag: Namespace:Technische Universitat Bergakademie Freiberg Institute of Biosciences

text: ArrayExpress

text: Protocols: Centrifugation of culture in late exponential phase at 8000 x g and 4째C for 15 minutes. Washing of cells with cold 10 mM H2SO4, and twice with 10 mM sodium citrate pH 7.0. Growth of L.ferriphulum in DSMZ 882 medium (pH1.8) supplemented with 20 g L-1 ferrous sulfate in a shaker at 37째C and 180 rpm. Isolation of total RNA by RNeasy Mini Kit from Qiagen. DNA removed by treatment with DNase I (New England Biolabs). Evaluation of purity and integrity of total RNA with Agilent Bioanalyzer 2100 and an RNA 600 Nano Kit (Agilent Technologies. For each sample 3 RNA preparations with RMNA integrity number above 7 from independent biological replicates pooled into one. Depletion of ribosomal RNA by MICROBExpress kit (Thermo Fisher). Preparation of cDNA library by TruSeq stranded mRNA library prep kit (Illumina).

text: Leptospirillum ferriphilum

text: Leptospirillum ferriphilum

text: whole organism

text: Leptospirillum ferriphilum

characteristic: strain

text: Sample 1


E-MTAB-11136:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Technische Universitat Bergakademie Freiberg Institute of Biosciences

characteristic: INSDC first public

text: public

text: E-MTAB-11136:Sample 2

text: ArrayExpress

text: Leptospirillum ferriphilum

text: Leptospirillum ferriphilum

text: whole organism

text: Leptospirillum ferriphilum

text: Sample 2


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: Thuenen Institut for Biodiversity

text: public

tag: Namespace:Thuenen Institut for Biodiversity

characteristic: Submitter Id

characteristic: collection date

text: Soil sample from agricultural field

characteristic: description

text: Land

characteristic: environment (biome)

text: Agriculture

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: soil metagenome

text: DiverIMPACTS

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GERMAN CANCER RESEARCH CENTER (DKFZ)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:GERMAN CANCER RESEARCH CENTER (DKFZ)

characteristic: cell line

text: hemocyte

characteristic: cell type

text: fruit fly

characteristic: common name

text: Combinatorial RNAi replicate 1

text: embryo

characteristic: dev stage

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

characteristic: title


text: GERMAN CANCER RESEARCH CENTER (DKFZ)

text: public

characteristic: Submitter Id

text: hemocyte

text: fruit fly

text: Combinatorial RNAi replicate 2

characteristic: description

text: embryo

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: ENA-CHECKLIST

text: GERMAN CANCER RESEARCH CENTER (DKFZ)

text: public

text: hemocyte

text: fruit fly

text: Control RNAi replicate 1

text: embryo

text: Drosophila melanogaster

text: Drosophila melanogaster


characteristic: ENA-FIRST-PUBLIC

text: ROBERT KOCH INSTITUTE

text: public

tag: Namespace:ROBERT KOCH INSTITUTE

text: lungs

text: Pan troglodytes verus

text: Pan troglodytes verus


characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH INSTITUTE

text: public

text: faeces

text: Pan troglodytes verus

text: Pan troglodytes verus


characteristic: External Id

text: ROBERT KOCH INSTITUTE

text: public

text: lung

text: Pan troglodytes verus

text: Pan troglodytes verus


characteristic: INSDC center name

text: public

tag: Namespace:Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology and Department of Internal Medicine III, University Hospital Heidelberg.

text: ArrayExpress

characteristic: broker name

text: human cardiac microvascular endothelial cells

text: endothelial cell

text: human

text: Protocols: Endothelial cells were purchased from Lonza (HAoEC: CC-2535, HUVEC: CC-2935, HCMEC: CC-7030) and HUVECs were cultured in endothelial basal medium (EBM; CC-3156, Lonza) supplemented with 10% fetal calf serum (FCS; 4133, Invitrogen), amphotericin-B, ascorbic acid, bovine brain extract, endothelial growth factor, gentamycin sulfate, and hydrocortisone (EGM-Bullet Kit; CC-3124, Lonza) while HCMEC and HAoEC were cultered in EBM-2 supplemented with 10% FCS, hydrocortisone, FGF, VEGF, R3-IGF, ascorbic acid, EGF and GA-1000 (EGM-2-Bullet kit; CC-3162, Lonza) at humidified atmosphere, at 37 °C/5% CO2 Total RNA lysates were isolated using the commercial Qiagen miRNeasy Kit (217004, Qiagen). RNase R treatment was performed with 10 µg of total RNA incubated for 15 minat 37°C with 10 U RNase R (RNR-07250, epicentre) in 1x RNase R digestion buffer (RNR-07250, epicentre). RNA was purified using the commercial Qiagen RNeasy MinElute CleanUp Kit (74204). RNA libraries were obtained with the TruSeq Stranded Total RNA Sample Prep Kit.

text: Homo sapiens

text: Homo sapiens

text: heart

characteristic: organism part

characteristic: replicate

text: Homo sapiens


text: Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology and Department of Internal Medicine III, University Hospital Heidelberg.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human umbilical vein endothelial cells

text: endothelial cell

text: human

text: Homo sapiens

text: Homo sapiens

text: umbilical cord

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: cell line

text: endothelial cell

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: heart

text: Homo sapiens


text: public

characteristic: Submitter Id

text: ArrayExpress

text: human aortic endothelial cells

text: endothelial cell

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: aorta

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SANTIAGO DE COMPOSTELA

text: public

tag: Namespace:UNIVERSITY OF SANTIAGO DE COMPOSTELA

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Genomic characterization of clone ST1193


LREC _269

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SANTIAGO DE COMPOSTELA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: LREC _269

text: Spain

text: diseased

text: Homo Sapiens

text: Human

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF SANTIAGO DE COMPOSTELA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Spain

text: diseased

text: Homo Sapiens

text: Human

text: Escherichia coli

text: Escherichia coli


text: Shanghai Institute of Rheumatology

text: public

tag: Namespace:Shanghai Institute of Rheumatology

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: monocyte

characteristic: cell type

text: human

characteristic: common name

text: Protocols: human PBMCs are collected and sorted CD14+ monocyte,after neon mediated electro-transfection,total 1x10^7 monocyte cells are collected and fixed by 37% formaldehyde1 DNA was purified using phenol-chloroform and further purified with QIAquick PCR purification kit (28106, Qiagen). The DNA concentration was detected by Qubit (ThermoFisher)

characteristic: description

text: adult

characteristic: developmental stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: lncRNA AC092723.1 knock down

characteristic: rna interference

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Shanghai Institute of Rheumatology

text: public

text: ArrayExpress

text: monocyte

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: age

text: young

characteristic: age category

characteristic: anonymized name

text: young mice

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: Israel:Ramat Gan

characteristic: geo loc name

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:colon mucosa

characteristic: host body product

text: UBERON:colon

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: colon

characteristic: organs

text: Bar-Ilan University

text: FALSE

text: colon

characteristic: sample type

text: mouse gut metagenome

text: Conjoined ontogeny of the B cell receptor repertoire and microbiome in mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: young

characteristic: age category

characteristic: anonymized name

text: young mice

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: Israel:Ramat Gan

text: UBERON:gastrointestinal system

text: UBERON:duodenum mucosa

text: UBERON:duodenum

text: mouse

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: duodenum

text: Bar-Ilan University

text: FALSE

text: duodenum

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: young

text: young mice

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: Israel:Ramat Gan

characteristic: geo loc name

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:ileum mucosa

characteristic: host body product

text: UBERON:ileum

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: ileum

characteristic: organs

text: Bar-Ilan University

text: FALSE

text: ileum

characteristic: sample type

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: young

characteristic: age category

characteristic: anonymized name

text: young mice

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: Israel:Ramat Gan

text: UBERON:gastrointestinal system

text: UBERON:ileum mucosa

text: UBERON:ileum

text: mouse

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: ileum

text: Bar-Ilan University

text: FALSE

text: ileum

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: old

text: old mice

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: Israel:Ramat Gan

characteristic: geo loc name

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:colon mucosa

characteristic: host body product

text: UBERON:colon

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: colon

characteristic: organs

text: Bar-Ilan University

text: FALSE

text: colon

characteristic: sample type

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: old

characteristic: age category

characteristic: anonymized name

text: old mice

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: Israel:Ramat Gan

text: UBERON:gastrointestinal system

text: UBERON:duodenum mucosa

text: UBERON:duodenum

text: mouse

text: Mus musculus

text: weeks

text: mouse gut metagenome

characteristic: organism

text: duodenum

text: Bar-Ilan University

text: FALSE

text: duodenum

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: old

text: old mice

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: Israel:Ramat Gan

characteristic: geo loc name

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:ileum mucosa

characteristic: host body product

text: UBERON:ileum

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: weeks

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: ileum

characteristic: organs

text: Bar-Ilan University

text: FALSE

text: ileum

characteristic: sample type

text: mouse gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: young

characteristic: age category

characteristic: anonymized name

text: young mice

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: Israel:Ramat Gan

text: UBERON:gastrointestinal system

text: UBERON:intestine

text: UBERON:intestine

text: mouse

text: Mus musculus

text: days

text: mouse gut metagenome

characteristic: organism

text: whole gut

text: Bar-Ilan University

text: FALSE

text: whole gut

text: mouse gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Gehring Lab Institute for Genetics  University of Cologne

unit: year

text: ArrayExpress

characteristic: broker name

text: HeLa Flp-In-T-REx

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: HeLa Flp-In-T-REx (established by Elena Dobrikova and Matthias Gromeier, Duke University Medical Center) WT and UPF3A overexpressing cells were maintained at 37° C, 5% CO2 and 90% humidity in Dublecco’s Modified Eagle Medium (DMEM, Thermo Fisher Scientific) supplemented with 9% fetal bovine serum (FBS) and Penicillin-Streptomycin (both Thermo Fisher Scientific). To induce expression of the stably integrated UPF3A construct, 30 μg/ml cumate was added and the cells were harvested after 48h. Total RNA was extracted using the Direct-zol RNA MiniPrep kit including the recommended DNase I treatment (Zymo Research) according to the manufacturer's instructions. Ribosomal depletion and strand specific library preparation was carried out with TruSeq Stranded Total RNA (with Ribo-Zero Gold) according to the manufacturer's instructions.

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

characteristic: disease

text: African American

characteristic: ethnic group

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: ERCC spike in

characteristic: protocol

characteristic: replicate

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Gehring Lab Institute for Genetics University of Cologne

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: HeLa Flp-In-T-REx

text: epithelial cell

text: human

characteristic: description

text: adult

text: cervical adenocarcinoma

text: African American

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: ERCC spike in

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: HeLa Flp-In-T-REx

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

characteristic: disease

text: African American

text: PiggyBac transposon insertion

characteristic: genetic modification

text: FLAG-UPF3A overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: ERCC spike in

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Istituto Nazionale Genetica Molecolare (INGM)

text: ArrayExpress

text: plasma cell

text: human

text: Protocols: Peripheral blood mononuclear cells (PBMC) from the year 2010 (Donor1) and year 2014 (Donor11) were isolated by the standard density-gradient centrifugation and cryopreserved until the day of use. Blood samples collected in 2020 from both Donor1 and Donor2 were processed immediately to isolate memory B cells and plasma cells by flow cytometry followed by single-cell immune profiling using the 10X system. Single cell suspension was performed according to Chromium Next GEM Single cell V(D)J Reagent kits v1.1. The positive fractions of memory B cells and plasma cells were collected in 6ul of FCS containing eppendorf tubes that were pre-coated overnight with 2percent BSA. The 5’scRNA-seq libraries were generated using Chromium Next GEM Single Cell V(D)J Reagent Kit v1.1 or v2 (10X Genomics) according to the manufacturer’s protocol. Paired heavy and light chain BCR libraries were prepared from the sorted B cell populations. All the steps were followed as per the manufacturer’s instructions in user guide recommended for 10X Genomics kit v1.1 or 2.

text: adult

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Istituto Nazionale Genetica Molecolare (INGM)

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: memory B cell

text: human

characteristic: description

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: plasma cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

text: public

characteristic: collection date

text: Eco-AlpsWater project: 16S rRNA sequences determined in samples collected in 59 Alpine lakes and rivers

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Faaker

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: 341F (5' CCTACGGGNGGCWGCAG 3'); 805Rmod (5' GACTACNVGGGTWTCTAATCC 3')

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

text: Austria

text: Mondsee

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

text: lake

text: biofilm

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

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text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Idro

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: plankton

text: Italy

text: Iseo

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ledro

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: plankton

text: Italy

text: Maggiore

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ragogna

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: plankton

text: Italy

text: Serraia

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Varese

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: river

text: biofilm

text: Italy

text: Adige

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Corbiolo

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: river

text: biofilm

text: Italy

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Garda

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: river

text: biofilm

text: Italy

text: Restena

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tagliamento

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: plankton

text: Slovenia

text: Bled

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bohinj

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: plankton

text: Slovenia

text: Pernica

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: plankton

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Slivnica

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: plankton

text: Slovenia

text: Vogrscek

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bistrica

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: biofilm

text: Slovenia

text: Bled

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Glinscica

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: lake

text: biofilm

text: Slovenia

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ljubljanica

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: river

text: biofilm

text: Slovenia

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Risano

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: water body

text: river

text: biofilm

text: Slovenia

text: Sava

text: metagenome

text: metagenome

text: Eco-AlpsWater 16S rRNA sequences

text: metagenome

text: Illumina MiSeq

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

characteristic: title

text: water

characteristic: water environmental package


text: FEM

text: public

text: water body

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: biofilm

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Soca-Isonzo

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: Eco-AlpsWater 16S rRNA sequences

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: sequencing run

text: 16S rRNA

text: Eco-AlpsWater 16S rRNA sequences

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU University Museum

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NTNU University Museum

characteristic: Submitter Id

text: Control

characteristic: description

text: aquatic metagenome

text: aquatic metagenome


text: NTNU University Museum

text: public

text: Ethanol from kick sample

text: aquatic metagenome

text: aquatic metagenome

characteristic: title


text: Hospital Sirio-Libanes

text: public

tag: Namespace:Hospital Sirio-Libanes

text: not collected

characteristic: collection date

text: Sample #1 from patient #1

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: Comparison of 16S rRNA regions for urobiome profiling

text: up to 4h

characteristic: sample freeze interval

unit: °C

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #2 from patient #2

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #3 from patient #3

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #4 from patient #4

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #5 from patient #5

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: BPH

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #6 from patient #6

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #7.1 from patient #7

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #7.2 from patient #7

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #7.3 from patient #7

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #8.1 from patient #8

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #8.2 from patient #8

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #9.1 from patient #9

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #9.2 from patient #9

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #10.1 from patient #10

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #10.2 from patient #10

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #13.1 from patient #13

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: NMIBC

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: not collected

text: Sample #13.2 from patient #13

text: urinary bladder

text: not collected

text: urine

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

characteristic: host age

text: NMIBC

characteristic: host disease status

text: male

characteristic: host sex

text: human-associated

characteristic: human associated environmental package

characteristic: investigation type

text: QIAseq 16S/ITS Screening Panel

characteristic: library construction method

text: QIAamp DNA Microbiome

characteristic: nucleic acid extraction

text: human urinary tract metagenome

characteristic: organism

characteristic: patient

text: up to 4h

characteristic: sample freeze interval

characteristic: sample storage temperature

text: human urinary tract metagenome

text: Illumina MiSeq

text: catheter

characteristic: urine/collection method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sirio-Libanes

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: collection date

text: Sample #14 from patient #14

characteristic: description

text: urinary bladder

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: urine

text: Brazil

text: not collected

text: not collected

text: BPH

text: male

text: human-associated

text: QIAseq 16S/ITS Screening Panel

text: QIAamp DNA Microbiome

text: human urinary tract metagenome

characteristic: project name

text: up to 4h

text: human urinary tract metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title

text: catheter


characteristic: ENA-CHECKLIST

text: Hospital Sirio-Libanes

text: public

text: Smart Control

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Hospital Sirio-Libanes

text: public

text: DNA extraction negative control

text: metagenome

text: metagenome


characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-109231638526272:BT549 STAT1 KO Reversine #1

tag: Namespace:European Research Institute for the Biology of Ageing University Medical Center Groningen

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mammary epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: For Reversine/DMSO treatment: BT549 cells (with according KOs) were synchronized with double thymidine block. Seven hours after thymidine release, synchronized BT549 cells were treated with DMSO or 250 nM Reversine. After 48 hours, cells were harvested using Tryple. Pelleted cells were washed with 1xDPBS before being stored as dry pellets at -20 degree Celsius. For IFN gamma treatment: BT549 cells were treated with 50 ng IFN gamma for 2 hours. After 2 hours incubation, cells were harvested and washed with 1XDPBS before being stored as dry pellet at -20 degree Celsius. For whole transcriptome analysis, RNA was isolated using the RNeasy mini kit (Qiagen) in accordance to manufacturer's protocol and RNA quality was examined using the Agilent 2100 Bioanalyzer (Agilent Technologies). 250-500 ng of total RNA was used as input for mRNA enrichment using NEXTflex Poly(A) Beads (Bio Scientific) followed by library preparation using a NEXTflex Rapid Directional qRNA-Seq Kit (Bio Scientific).

text: adult

characteristic: developmental stage

text: breast ductal adenocarcinoma

characteristic: disease

text: STAT1 knockout

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

characteristic: replicate

text: Homo sapiens

text: BT549 STAT1 KO Reversine #1