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characteristic: Submitter Id

text: ArrayExpress

text: mammary epithelial cell

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text: adult

text: breast ductal adenocarcinoma

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text: BT549 STAT1 KO Reversine #2


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text: Protocols: For Reversine/DMSO treatment: BT549 cells (with according KOs) were synchronized with double thymidine block. Seven hours after thymidine release, synchronized BT549 cells were treated with DMSO or 250 nM Reversine. After 48 hours, cells were harvested using Tryple. Pelleted cells were washed with 1xDPBS before being stored as dry pellets at -20 degree Celsius. For IFN gamma treatment: BT549 cells were treated with 50 ng IFN gamma for 2 hours. After 2 hours incubation, cells were harvested and washed with 1XDPBS before being stored as dry pellet at -20 degree Celsius. For whole transcriptome analysis, RNA was isolated using the RNeasy mini kit (Qiagen) in accordance to manufacturer's protocol and RNA quality was examined using the Agilent 2100 Bioanalyzer (Agilent Technologies). 250-500 ng of total RNA was used as input for mRNA enrichment using NEXTflex Poly(A) Beads (Bio Scientific) followed by library preparation using a NEXTflex Rapid Directional qRNA-Seq Kit (Bio Scientific).

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characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Karolinska Institutet

characteristic: Submitter Id

text: human

characteristic: common name

text: Shotgun metagenome from negative H. pylori infection Patient 1;Lower stomach biopsy section swab

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Human Stomach

characteristic: tissue type


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from negative H. pylori infection Patient 1;Upper stomach biopsy section swab

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Human Stomach

characteristic: title


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from negative H. pylori infection Patient 2;Lower stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from negative H. pylori infection Patient 2;Upper stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from negative H. pylori infection Patient 3;Lower stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from negative H. pylori infection Patient 3;Upper stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from positive H. pylori infection Patient 1;Lower stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from positive H. pylori infection Patient 1;Upper stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from positive H. pylori infection Patient 2;Lower stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: Karolinska Institutet

text: public

text: human

text: Shotgun metagenome from positive H. pylori infection Patient 2;Upper stomach biopsy section swab

text: Homo sapiens

text: Homo sapiens

text: Human Stomach


text: VIB Center for Molecular Neurology

text: public

tag: Namespace:VIB Center for Molecular Neurology

text: VIB - UAntwerp Center for Molecular Neurology

characteristic: collected by

text: human

text: Merged frontal cortex cDNA sample (n=18)

text: Belgium

characteristic: geographic location (country and/or sea)

text: Antwerp

characteristic: geographic location (region and locality)

text: Complex Genetics of Alzheimer's Disease Group (Kristel Sleegers Lab)

characteristic: lab host

text: Homo sapiens

text: Homo sapiens

text: brain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VIB Center for Molecular Neurology

text: public

text: human

text: Merged hippocampal cDNA sample (n=16)

text: Belgium

text: Antwerp

text: Homo sapiens

text: Homo sapiens

text: brain


characteristic: External Id

text: VIB Center for Molecular Neurology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: lymphoblastoid cell line

characteristic: cell type

text: human

text: Merged lymphoblastoid cell line cDNA sample (n=59)

text: Belgium

text: Antwerp

text: Homo sapiens

text: Homo sapiens


text: VIB Center for Molecular Neurology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lymphoblastoid cell line

text: human

text: Pooled unbarcoded LCL cDNA sample of n=14 individuals

text: Belgium

text: Antwerp

text: Homo sapiens

text: Homo sapiens


text: not collected

text: Stanford University School of Medicine

text: public

characteristic: SEASON

tag: Namespace:Stanford University School of Medicine

text: not collected

characteristic: altitude

characteristic: collection date

text: Hadza stool sample 1572

characteristic: description

text: TRUE

text: host-associated

text: animal-associated

text: animal distal gut

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tanzania

unit: year

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: female

characteristic: host sex

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: YES

text: The Hadza Gut Microbiome Exhibits Extensive Trans-domain Diversity and Social Strain Sharing

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method


text: HUKAMAKO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Stanford University School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SEASON

characteristic: SRA accession

characteristic: Submitter Id

text: SPRING

characteristic: altitude

characteristic: collection date

text: Hadza stool sample 2352

characteristic: description

text: TRUE

text: host-associated

text: animal-associated

text: animal distal gut

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Tanzania

characteristic: geographic location (region and locality)

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: not collected

text: not collected

text: human-gut

text: metagenome

text: human gut metagenome

text: Stanford University School of Medicine

text: YES

text: human gut metagenome

text: Illumina

characteristic: title


text: HUKAMAKO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Stanford University School of Medicine

text: public

text: STREAM

text: Hadza stool sample 2652

text: TRUE

text: host-associated

text: animal-associated

text: animal distal gut

text: terrestrial biome

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Tanzania

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

unit: cm

characteristic: host height

text: child

characteristic: host life stage

text: female

characteristic: host sex

characteristic: host subject id

unit: kg

characteristic: host total mass

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: YES

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method


text: HUKAMAKO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Stanford University School of Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SEASON

characteristic: SRA accession

characteristic: Submitter Id

text: STREAM

characteristic: altitude

characteristic: collection date

text: Hadza stool sample 1654

characteristic: description

text: TRUE

text: host-associated

text: animal-associated

text: animal distal gut

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Tanzania

characteristic: geographic location (region and locality)

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: female

text: human-gut

text: metagenome

text: human gut metagenome

text: Stanford University School of Medicine

text: YES

text: human gut metagenome

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Stanford University School of Medicine

characteristic: INSDC center name

text: public

text: not collected

text: RAJ1013YZ stool sample

text: TRUE

text: host-associated

text: animal-associated

text: animal distal gut

text: terrestrial biome

text: human-associated habitat

text: feces

text: Nepal

characteristic: geographic location (longitude)

text: Nepal

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: not collected

characteristic: host life stage

text: not collected

characteristic: host sex

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: NO

text: Raji

characteristic: population

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: Stanford University School of Medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

characteristic: altitude

characteristic: collection date

text: RAU0027AZ stool sample

characteristic: description

text: TRUE

text: host-associated

text: animal-associated

text: animal distal gut

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Nepal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Nepal

characteristic: geographic location (region and locality)

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: not collected

text: not collected

text: human-gut

text: metagenome

text: human gut metagenome

text: Stanford University School of Medicine

text: NO

text: Raute

text: human gut metagenome

text: Illumina

characteristic: title


E-MTAB-11228:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 1

tag: Namespace:Wageningen University & Research

text: ArrayExpress

characteristic: broker name

text: Protocols: G. pallida D383 1-2A was mass propagated in potato plants using the standard protocol of the Laboratory of Nematology of Wageningen University. Batch 1-2A of population D383 was removed from the -80˚C and brought to 4˚C where it is hatching competent between 2015 and 2018. Hatching stimlant production and application: Potato root exudates were collected from 6 weeks old plants of wild potato accessions PNT 777-2 (CGN, the Netherlands) according to the protocol described by Guerrieri et al., 2021. Briefly, 5-10 in vitro cuttings of this potato accessions were transplanted into a single 14cm (diameter) plastic pot and let grow for 6 weeks. Exudates were collected by flushing pots with 500ml of distilled water. Post extraction exudates were filtered in whatman filter paper to remove excess debris and soil particles. Exudate aliquots were stored at -20C. For Solaneclepin A, the material used was pure, chemically synthesized SolA (as described and kindly provided by Tanino et al., 2011). Prior to exposure to treatments dry cysts of G. pallida D383 1-2A were hydrated for 7 days in tap water from the laboratory sink of the University of Amsterdam. The water used for hydration of the cysts was changed daily to prevent the growth of microorganisms on the surface of the cysts. After 7 days, approximately 13mg cysts were placed on each insert of a Netwell 12 well plate with insert with 74um mesh size. The distribution of the treatments over the netwell plates was randomized.Technical replicates, (n=5), were generated for each time point of harvest. The hatching stimulation treatment was performed in 12 well Netwell plates with 74um mesh size insert (Corning)(SolA) . The potato root diffusate used at 0.1x dilution in tap water for this experiment was collected from wild potato cuttings of accessions PNT 777-2 (WUR Plant breeding) using the method described by Guerrieri et al., 2021. Pure Solanoeclepin A was chemically synthesized by Tanino et al., 2018 and was kindly given to Dr. H. Bouwmeester. Solanoeclepin A was dissolved to a final concentration of 2nM in a 1% ethanol solution. One percent ethanol was used as a control. Cysts exposed to treatments or control were collected in 2ml safe-lock Eppendorf tube containing two 3mm metal beads and placed immediately in liquid nitrogen. Until all replicates and time points were collected, samples were placed at -80˚C. Once the time course was finished and all samples collected, tubes were brought to liquid nitrogen from their storage at -80˚C and were homogenized at room temperature with 75ul of RLB buffer using a Tissue-lizer by 2 pulses of 60s at a frequency of 25 cycles/s. Hatching stimlant production and application: Potato root exudates were collected from 6 weeks old plants of wild potato accessions PNT 777-2 (CGN, the Netherlands) according to the protocol described by Guerrieri et al., 2021. Briefly, 5-10 in vitro cuttings of this potato accessions were transplanted into a single 14cm (diameter) plastic pot and let grow for 6 weeks. Exudates were collected by flushing pots with 500ml of distilled water. Post extraction exudates were filtered in whatman filter paper to remove excess debris and soil particles. Exudate aliquots were stored at -20C. For Solaneclepin A, the material used was pure, chemically synthesized SolA (as described and kindly provided by Tanino et al., 2011). Prior to exposure to treatments dry cysts of G. pallida D383 1-2A were hydrated for 7 days in tap water from the laboratory sink of the University of Amsterdam. The water used for hydration of the cysts was changed daily to prevent the growth of microorganisms on the surface of the cysts. After 7 days, approximately 13mg cysts were placed on each insert of a Netwell 12 well plate with insert with 74um mesh size. The distribution of the treatments over the netwell plates was randomized.Technical replicates, (n=5), were generated for each time point of harvest. The hatching stimulation treatment was performed in 12 well Netwell plates with 74um mesh size insert (Corning)(SolA) . The potato root diffusate used at 0.1x dilution in tap water for this experiment was collected from wild potato cuttings of accessions PNT 777-2 (WUR Plant breeding) using the method described by Guerrieri et al., 2021. Pure Solanoeclepin A was chemically synthesized by Tanino et al., 2018 and was kindly given to Dr. H. Bouwmeester. Solanoeclepin A was dissolved to a final concentration of 2nM in a 1% ethanol solution. One percent ethanol was used as a control. Cysts exposed to treatments or control were collected in 2ml safe-lock Eppendorf tube containing two 3mm metal beads and placed immediately in liquid nitrogen. Until all replicates and time points were collected, samples were placed at -80˚C. Once the time course was finished and all samples collected, tubes were brought to liquid nitrogen from their storage at -80˚C and were homogenized at room temperature with 75ul of RLB buffer using a Tissue-lizer by 2 pulses of 60s at a frequency of 25 cycles/s. RNA was isolated using Qiagen’s RNeasy micro kit with in-column DNase I treatment of the RNA according to the manufacturer’s intructions. RNA samples were analysed by Nanodrop, Qubit and were stored at -80 ℃ until further use. Approximately 0.5 microgram total RNA was used for RNA library preparation suitable for illumina HiSeq paired end sequencing using TruSeq Stranded mRNA Sample Prep kit (illumina). In short, after polyA based mRNA selection, RNA were further processed including subsequently fragmentation, first and second strand cDNA synthesis, adapter ligation and final library amplification resulting in RNAseq libraries including unique dual indexes, all following manufacturers protocol. Final libraries were eluted in 30 µl elution buffer followed by library quality assessment using a Fragment Analyzer (Agilent Technologies) and quantified by Qubit fluorescence measurements (Invitrogen, Life Technologies). Prepared libraries were pooled equimolar and combined with other indexed libraries for sequencing on an illumina NovaSeq 6000 system. Final sequencing was done using a S2 type flow cell, XP loading workflow and with settings specific for 2x150 nt paired end reads plus dual indexes reads. All steps for sequencing were carried out according to manufacturer’s protocol. Demultiplexing of reads per sample by corresponding indexes was done using bcl2fastq v2.20.0.422 (illumina Inc, San Diego CA, USA).

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 0.1 x potato root exudate

characteristic: stimulus

text: D383 1-2A

characteristic: strain

text: Sample 1


E-MTAB-11228:Sample 2

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 2


E-MTAB-11228:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 3

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 3

characteristic: title


E-MTAB-11228:Sample 4

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 4

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 4


E-MTAB-11228:Sample 5

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 5

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 0.1 x potato root exudate

characteristic: stimulus

text: D383 1-2A

text: Sample 5


E-MTAB-11228:Sample 6

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 6

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

characteristic: strain

text: Sample 6


E-MTAB-11228:Sample 7

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 7


E-MTAB-11228:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 8

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 8

characteristic: title


E-MTAB-11228:Sample 9

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 9

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 9


E-MTAB-11228:Sample 12

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 12

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 0.1 x potato root exudate

characteristic: stimulus

text: D383 1-2A

text: Sample 12


E-MTAB-11228:Sample 13

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 13

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

characteristic: strain

text: Sample 13


E-MTAB-11228:Sample 14

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 14

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 0.1 x potato root exudate

text: D383 1-2A

text: Sample 14


E-MTAB-11228:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 17

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 17

characteristic: title


E-MTAB-11228:Sample 18

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 18

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 18


E-MTAB-11228:Sample 19

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 19

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 2 nM solanoeclepin A

characteristic: stimulus

text: D383 1-2A

text: Sample 19


E-MTAB-11228:Sample 20

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 20

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

characteristic: strain

text: Sample 20


E-MTAB-11228:Sample 21

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 21

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 21


E-MTAB-11228:Sample 22

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 22

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 22

characteristic: title


E-MTAB-11228:Sample 23

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 23

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 23


E-MTAB-11228:Sample 24

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 24

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 2 nM solanoeclepin A

characteristic: stimulus

text: D383 1-2A

text: Sample 24


E-MTAB-11228:Sample 25

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 25

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

characteristic: strain

text: Sample 25


E-MTAB-11228:Sample 26

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 26

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 26


E-MTAB-11228:Sample 27

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 27

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 27

characteristic: title


E-MTAB-11228:Sample 28

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 28

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 2 nM solanoeclepin A

text: D383 1-2A

text: Sample 28


E-MTAB-11228:Sample 30

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 30

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 2 nM solanoeclepin A

characteristic: stimulus

text: D383 1-2A

text: Sample 30


E-MTAB-11228:Sample 31

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 31

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

characteristic: strain

text: Sample 31


E-MTAB-11228:Sample 32

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 32

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 32


E-MTAB-11228:Sample 33

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 33

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 33

characteristic: title


E-MTAB-11228:Sample 34

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 34

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 34


E-MTAB-11228:Sample 35

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 35

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 1% ethanol

characteristic: stimulus

text: D383 1-2A

text: Sample 35


E-MTAB-11228:Sample 36

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 36

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

characteristic: strain

text: Sample 36


E-MTAB-11228:Sample 37

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 37

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 37


E-MTAB-11228:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 38

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 38

characteristic: title


E-MTAB-11228:Sample 39

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 39

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 39


E-MTAB-11228:Sample 40

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 40

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 1% ethanol

characteristic: stimulus

text: D383 1-2A

text: Sample 40


E-MTAB-11228:Sample 41

characteristic: ENA-CHECKLIST

text: Wageningen University & Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11228:Sample 41

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

characteristic: strain

text: Sample 41


E-MTAB-11228:Sample 42

text: Wageningen University & Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11228:Sample 42

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 42


E-MTAB-11228:Sample 43

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 43

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 43

characteristic: title


E-MTAB-11228:Sample 44

text: Wageningen University & Research

characteristic: INSDC center name

text: public

text: E-MTAB-11228:Sample 44

text: ArrayExpress

characteristic: broker name

text: second-stage juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 50 to 100 cysts

text: Globodera pallida

text: Globodera pallida

text: cyst

text: Globodera pallida

text: 1% ethanol

text: D383 1-2A

text: Sample 44


E-MTAB-11228:Sample 45

text: Wageningen University & Research

text: public

text: E-MTAB-11228:Sample 45

text: ArrayExpress

text: second-stage juvenile

text: wild type genotype

text: 50 to 100 cysts

characteristic: individual

text: Globodera pallida

characteristic: organism

text: Globodera pallida

text: cyst

characteristic: organism part

text: Globodera pallida

text: 1% ethanol

characteristic: stimulus

text: D383 1-2A

text: Sample 45


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Max Planck Institute for Developmental Biology

characteristic: collection date

text: Single plant from a herbicide-sensitive the German reference population DE01087 (Appels Wilde Samen GmbH, Darmstadt).

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: 23C 8 h daytime, 18C 16 h nighttime.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Alopecurus myosuroides

text: blackgrass

characteristic: organism common name

text: early inforescence emergence

characteristic: plant developmental stage

text: Standard substrate

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Alopecurus myosuroides

text: not provided

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Developmental Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: Germany

text: not collected

text: not collected

text: glasshouse

text: 23C 8 h daytime, 18C 16 h nighttime.

text: Alopecurus myosuroides

characteristic: organism

text: blackgrass

text: early inforescence emergence

text: Standard substrate

text: roots

text: diploid

text: healthy

text: Alopecurus myosuroides

text: not provided

characteristic: title


characteristic: INSDC last update

text: public

characteristic: collection date

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: 23C 8 h daytime, 18C 16 h nighttime.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Alopecurus myosuroides

text: blackgrass

characteristic: organism common name

text: early inforescence emergence

characteristic: plant developmental stage

text: Standard substrate

characteristic: plant growth medium

text: flowers

text: diploid

text: healthy

text: Alopecurus myosuroides

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Germany

text: not collected

text: not collected

text: glasshouse

text: 23C 8 h daytime, 18C 16 h nighttime.

text: Alopecurus myosuroides

text: blackgrass

text: early inforescence emergence

text: Standard substrate

text: anthers

characteristic: plant structure

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Alopecurus myosuroides

text: not provided

characteristic: source material identifiers


characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: description

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: 23C 8 h daytime, 18C 16 h nighttime.

characteristic: isolation and growth condition

text: Alopecurus myosuroides

characteristic: organism

text: blackgrass

text: early inforescence emergence

text: Standard substrate

text: pollen

text: diploid

text: healthy

text: Alopecurus myosuroides

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spanish National Cancer Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Spanish National Cancer Research Centre

text: house mouse

characteristic: common name

text: Replicate 1 of 3 months old wild type mouse

text: Mus musculus

text: Mus musculus

text: Wild Type 3 Months Replicate 1


text: Spanish National Cancer Research Centre

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: house mouse

text: Replicate 2 of 3 months old wild type mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Wild Type 3 Months Replicate 2


text: Spanish National Cancer Research Centre

text: public

text: house mouse

text: Replicate 3 of 3 months old wild type mouse

text: Mus musculus

text: Mus musculus

text: Wild Type 3 Months Replicate 3


text: Spanish National Cancer Research Centre

text: public

text: house mouse

text: Replicate 4 of 3 months old wild type mouse

text: Mus musculus

text: Mus musculus

text: Wild Type 3 Months Replicate 4


text: Spanish National Cancer Research Centre

text: public

text: house mouse

text: Replicate 1 of 6 months old wild type mouse

text: Mus musculus

text: Mus musculus

text: Wild Type 6 Months Replicate 1


text: Spanish National Cancer Research Centre

text: public

text: house mouse

text: Replicate 2 of 6 months old wild type mouse

text: Mus musculus

text: Mus musculus

text: Wild Type 6 Months Replicate 2


text: Spanish National Cancer Research Centre

text: public

text: house mouse

text: Replicate 3 of 6 months old wild type mouse

text: Mus musculus

text: Mus musculus

text: Wild Type 6 Months Replicate 3