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characteristic: environment (biome)

text: marine biota

characteristic: environment (feature)

text: biofilm material

text: Greece

text: not collected

text: not collected

text: loggerhead sea turtle

text: host-associated

text: metagenome

text: sequencing batch 2

text: epibiont metagenome

characteristic: organism

characteristic: project name

text: epibiont metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: loggerhead skin sample GTB132 18S V4 rRNA gene sequences

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna

characteristic: Submitter Id

text: Italy

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: not provided

characteristic: isolate

text: SWAB FROM SKIN TISSUE

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Italy

text: not collected

text: Sus scrofa

text: not provided

text: SWAB FROM SKIN TISSUE

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Italy

text: not collected

text: Sus scrofa

text: not provided

text: SWAB FROM ENVIRONMENTAL GROUND

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

tag: Namespace:GHENT UNIVERSITY

text: Vespa velutina pooled crops

characteristic: description

text: Vespa velutina gut

characteristic: environment (biome)

text: crop compartment

characteristic: environment (feature)

text: bacterial communiy

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Gut bacterial communities in the gut compartments and ovaries of the Asian hornet Vespa velutina nigrithorax

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Vespa velutina 6 midgut

text: Vespa velutina gut

text: midgut compartment

text: bacterial communiy

text: Belgium

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

text: public

text: Vespa velutina 10 midgut

characteristic: description

text: Vespa velutina gut

characteristic: environment (biome)

text: midgut compartment

characteristic: environment (feature)

text: bacterial communiy

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Vespa velutina pooled midguts 1

text: Vespa velutina gut

text: midgut compartment

text: bacterial communiy

text: Belgium

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Vespa velutina pooled midguts 2

characteristic: description

text: Vespa velutina gut

characteristic: environment (biome)

text: midgut compartment

text: bacterial communiy

text: Belgium

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Vespa velutina 5 hindgut

text: Vespa velutina gut

text: hindgut compartment

characteristic: environment (feature)

text: bacterial communiy

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Vespa velutina 6 hindgut

text: Vespa velutina gut

text: hindgut compartment

text: bacterial communiy

text: Belgium

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Vespa velutina 8 hindgut

characteristic: description

text: Vespa velutina gut

characteristic: environment (biome)

text: hindgut compartment

text: bacterial communiy

text: Belgium

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Vespa velutina 9 hindgut

text: Vespa velutina gut

text: hindgut compartment

characteristic: environment (feature)

text: bacterial communiy

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Vespa velutina 10 hindgut

text: Vespa velutina gut

text: hindgut compartment

text: bacterial communiy

text: Belgium

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


VVh

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: VVh

characteristic: Submitter Id

characteristic: collection date

text: Vespa velutina pooled hindguts

characteristic: description

text: Vespa velutina gut

characteristic: environment (biome)

text: hindgut compartment

text: bacterial communiy

text: Belgium

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region

text: VVh


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Vespa velutina 5 ovaries

text: Vespa velutina

text: ovaries

characteristic: environment (feature)

text: bacterial communiy

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GHENT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Vespa velutina 6 ovaries

text: Vespa velutina

text: ovaries

text: bacterial communiy

text: Belgium

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: V3-V4 region

characteristic: target subfragment


VVo

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GHENT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: VVo

characteristic: Submitter Id

characteristic: collection date

text: Vespa velutina pooled ovaries

characteristic: description

text: Vespa velutina

characteristic: environment (biome)

text: ovaries

text: bacterial communiy

text: Belgium

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: 16S rRNA

text: V3-V4 region

text: VVo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oxford University Clinical Reseach Unit

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Oxford University Clinical Reseach Unit

text: not provided

characteristic: common name

text: Viet Nam

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

text: Acinetobacter baumannii

characteristic: isolate

text: Wounds

characteristic: isolation source

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oxford University Clinical Reseach Unit

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: not provided

text: Viet Nam

text: diseased

text: human

text: Acinetobacter baumannii

text: Sputum

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Oxford University Clinical Reseach Unit

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: diseased

text: human

text: Acinetobacter baumannii

text: Pus

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oxford University Clinical Reseach Unit

characteristic: INSDC last update

text: public

text: not provided

text: Viet Nam

text: diseased

text: human

text: Acinetobacter baumannii

text: Urine

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Oxford University Clinical Reseach Unit

text: public

characteristic: INSDC status

text: not provided

characteristic: common name

text: Viet Nam

text: diseased

characteristic: host health state

text: human

text: Acinetobacter baumannii

text: Sputum

text: Acinetobacter pittii

text: Acinetobacter pittii


text: Oxford University Clinical Reseach Unit

text: public

text: not provided

text: Viet Nam

text: diseased

text: human

characteristic: host scientific name

text: Acinetobacter baumannii

characteristic: isolate

text: Others

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-LAST-UPDATE

text: Oxford University Clinical Reseach Unit

text: public

text: not provided

text: Viet Nam

text: diseased

text: human

text: Acinetobacter baumannii

text: Blood

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: title


characteristic: External Id

text: Oxford University Clinical Reseach Unit

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Viet Nam

text: diseased

text: human

text: Acinetobacter baumannii

text: Sputum

text: Acinetobacter nosocomialis

text: Acinetobacter nosocomialis


text: Oxford University Clinical Reseach Unit

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Viet Nam

text: diseased

text: human

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oxford University Clinical Reseach Unit

text: public

text: not provided

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: diseased

text: human

text: Acinetobacter baumannii

text: Blood

text: Acinetobacter seifertii

text: Acinetobacter seifertii


text: Oxford University Clinical Reseach Unit

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

characteristic: common name

text: Viet Nam

text: diseased

text: human

text: Acinetobacter baumannii

text: Urine

text: Acinetobacter pittii

text: Acinetobacter pittii


text: Oxford University Clinical Reseach Unit

text: public

text: not provided

text: Viet Nam

text: diseased

characteristic: host health state

text: human

characteristic: host scientific name

text: Acinetobacter baumannii

characteristic: isolate

text: Blood

text: Acinetobacter pittii

text: Acinetobacter pittii


characteristic: ENA-LAST-UPDATE

text: FZB

text: public

text: WGS of MTBC isolates

characteristic: description

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


E-MTAB-11537:Sample 1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11537:Sample 1

tag: Namespace:Retroviral Immunology The Francis Crick Institute

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Brain biopsies were collected from newborn mice of the respective genotype (4 per genotype) and were processed independently. RNA was prepared with NucleoSpin RNA, Mini kit for RNA purification, (Macherey Nagel, cat. number 740955.50). rRNA was depleted with \rRNA Removal Mix - Gold\. Library prep was performed using the \Illumina TruSeq Stranded Total RNA\ kit.

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-11537:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Retroviral Immunology The Francis Crick Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11537:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 2


E-MTAB-11537:Sample 3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11537:Sample 3

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 3


E-MTAB-11537:Sample 4

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11537:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 4


E-MTAB-11537:Sample 17

text: public

text: E-MTAB-11537:Sample 17

text: ArrayExpress

text: house mouse

text: neonate

characteristic: developmental stage

text: Adar1-/mZa; Mavs-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 17


E-MTAB-11537:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-11537:Sample 18

text: ArrayExpress

text: house mouse

text: neonate

text: Adar1-/mZa; Mavs-/-

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 18

characteristic: title


E-MTAB-11537:Sample 19

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11537:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: neonate

text: Adar1-/mZa; Mavs-/-

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 19


E-MTAB-11537:Sample 20

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11537:Sample 20

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: Adar1-/mZa; Mavs-/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 20


E-MTAB-11537:Sample 13

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11537:Sample 13

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Adar1-/mZa; Zbp1-/-

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 13


E-MTAB-11537:Sample 14

text: public

text: E-MTAB-11537:Sample 14

text: ArrayExpress

text: house mouse

text: neonate

characteristic: developmental stage

text: Adar1-/mZa; Zbp1-/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 14


E-MTAB-11537:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-11537:Sample 15

text: ArrayExpress

text: house mouse

text: neonate

text: Adar1-/mZa; Zbp1-/-

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 15

characteristic: title


E-MTAB-11537:Sample 16

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11537:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: neonate

text: Adar1-/mZa; Zbp1-/-

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 16


E-MTAB-11537:Sample 5

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11537:Sample 5

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 5


E-MTAB-11537:Sample 6

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11537:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 6


E-MTAB-11537:Sample 7

text: public

text: E-MTAB-11537:Sample 7

text: ArrayExpress

text: house mouse

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 7


E-MTAB-11537:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-11537:Sample 8

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 8

characteristic: title


E-MTAB-11537:Sample 10

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11537:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 10


E-MTAB-11537:Sample 11

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11537:Sample 11

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 11


E-MTAB-11537:Sample 12

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11537:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Sample 12


E-MTAB-11537:Sample 9

text: public

text: E-MTAB-11537:Sample 9

text: ArrayExpress

text: house mouse

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UH

characteristic: INSDC first public

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: differential coverage and tetranucleotide frequency

characteristic: binning parameters

text: anvi'o

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: anvi'o

characteristic: completeness software

characteristic: contamination score

text: This sample represents a MAG derived from the metagenomic sample ERS10933925

text: tundra

characteristic: environment (biome)

text: mineral soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: tundra soil

characteristic: isolation source

text: soil metagenome

characteristic: metagenomic source

text: uncultured Nitrososphaeraceae bacterium

text: DARKFUNCTIONS

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrososphaeraceae bacterium

text: Illumina

characteristic: sequencing method

text: multi-marker

characteristic: taxonomic identity marker

text: uncultured Nitrososphaeraceae archaeon S1130_Bin_3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

characteristic: binning parameters

text: anvi'o

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: anvi'o

characteristic: completeness software

characteristic: contamination score

text: This sample represents a MAG derived from the metagenomic sample ERS10946909

characteristic: description

text: tundra

text: mineral soil

text: soil

text: Norway

text: metagenome-assembled genome

text: tundra soil

text: soil metagenome

text: uncultured Nitrososphaeraceae bacterium

characteristic: organism

text: DARKFUNCTIONS

text: uncultured Nitrososphaeraceae bacterium

text: Illumina

text: multi-marker

text: uncultured Nitrososphaeraceae archaeon COA_Bin_4_1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

text: public

text: anvi'o

text: anvi'o

text: This sample represents a MAG derived from the metagenomic sample ERS10933923

text: tundra

characteristic: environment (biome)

text: mineral soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: tundra soil

characteristic: isolation source

text: soil metagenome

characteristic: metagenomic source

text: uncultured Nitrososphaeraceae bacterium

text: DARKFUNCTIONS

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrososphaeraceae bacterium

text: Illumina

characteristic: sequencing method

text: multi-marker

characteristic: taxonomic identity marker

text: uncultured Nitrososphaeraceae archaeon S100_Bin_4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

characteristic: binning parameters

text: anvi'o

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: anvi'o

characteristic: completeness software

characteristic: contamination score

text: This sample represents a MAG derived from the metagenomic sample ERS10933929

characteristic: description

text: tundra

text: mineral soil

text: soil

text: Norway

text: metagenome-assembled genome

text: tundra soil

text: soil metagenome

text: uncultured Nitrososphaeraceae bacterium

characteristic: organism

text: DARKFUNCTIONS

text: uncultured Nitrososphaeraceae bacterium

text: Illumina

text: multi-marker

text: uncultured Nitrososphaeraceae archaeon S89_Bin_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Regensburg

text: public

text: B6-J_no DSS

text: gut metagenome

text: gut metagenome

characteristic: title


text: University Hospital Regensburg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B6-N_no DSS

text: gut metagenome

text: gut metagenome


text: University Hospital Regensburg

text: public

characteristic: Submitter Id

text: B6-J_1% DSS

text: gut metagenome

text: gut metagenome


text: University Hospital Regensburg

text: public

text: B6-N_1% DSS

text: gut metagenome

text: gut metagenome


E-MTAB-11540:Sample 1

text: public

text: E-MTAB-11540:Sample 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Lung biopsies were collected from newborn or adult mice of the respective genotype (5 per genotype) and were processed independently. RNA was prepared with NucleoSpin RNA, Mini kit for RNA purification, (Macherey Nagel, cat. number 740955.50). rRNA was depleted with rRNA Removal Mix - Gold. Library prep was performed using the QuantSeq 3’ mRNA-Seq Library Prep Kit FWD for Illumina kit.

text: neonate

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Sample 1


E-MTAB-11540:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 2

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 2


E-MTAB-11540:Sample 3

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 3

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 3

characteristic: title


E-MTAB-11540:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 4


E-MTAB-11540:Sample 5

text: public

text: E-MTAB-11540:Sample 5

text: ArrayExpress

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: Sample 5


E-MTAB-11540:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 6

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

characteristic: strain

text: Sample 6


E-MTAB-11540:Sample 7

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 7

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 7


E-MTAB-11540:Sample 8

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 8

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 8

characteristic: title


E-MTAB-11540:Sample 9

text: public

text: E-MTAB-11540:Sample 9

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 9


E-MTAB-11540:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 10

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: Sample 10


E-MTAB-11540:Sample 11

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 11

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

characteristic: strain

text: Sample 11


E-MTAB-11540:Sample 12

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 12

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 12


E-MTAB-11540:Sample 13

text: public

text: E-MTAB-11540:Sample 13

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 13

characteristic: title


E-MTAB-11540:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 14

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 14


E-MTAB-11540:Sample 15

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 15

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: Sample 15


E-MTAB-11540:Sample 16

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

characteristic: strain

text: Sample 16


E-MTAB-11540:Sample 17

text: public

text: E-MTAB-11540:Sample 17

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 17


E-MTAB-11540:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 18

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 18

characteristic: title


E-MTAB-11540:Sample 19

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 19

text: ArrayExpress

text: house mouse

text: neonate

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 19


E-MTAB-11540:Sample 20

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 20

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: Sample 20


E-MTAB-11540:Sample 21

text: public

text: E-MTAB-11540:Sample 21

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

characteristic: strain

text: Sample 21


E-MTAB-11540:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 22

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 22


E-MTAB-11540:Sample 23

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 23

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 23

characteristic: title


E-MTAB-11540:Sample 24

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 24

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: neonate

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 24


E-MTAB-11540:Sample 25

text: public

text: E-MTAB-11540:Sample 25

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: Sample 25


E-MTAB-11540:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 26

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

characteristic: strain

text: Sample 26


E-MTAB-11540:Sample 27

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 27

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 27


E-MTAB-11540:Sample 28

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11540:Sample 28

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 28

characteristic: title


E-MTAB-11540:Sample 29

text: public

text: E-MTAB-11540:Sample 29

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: neonate

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: Sample 29


E-MTAB-11540:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11540:Sample 30

text: ArrayExpress

text: house mouse

characteristic: description

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: Sample 30


E-MTAB-11540:Sample 31

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11540:Sample 31

text: ArrayExpress

text: house mouse

text: neonate

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

characteristic: strain

text: Sample 31