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text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

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text: Hopital du Valais, Institut Central des Hopitaux, Sion, Switzerland

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text: Valais Hospital, Central Institute; Sion, Switzerland

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text: Alexis Dumoulin, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

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text: VS

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text: Human

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text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

characteristic: geographic location (country and/or sea)

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text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba62cd4/2022


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text: Switzerland

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characteristic: organism


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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: HUG

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text: SIB

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text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collecting institution

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text: Switzerland

text: Human

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/un-HUG-37765162/2022


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

text: public

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text: SIB

text: Switzerland

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text: GE

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text: Homo sapiens

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text: hCoV-19/Switzerland/GE-HUG-37810004/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC first public

text: public

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text: SIB

text: Daniel Ehrsam, Isabel Stürmer, Catharine Aquino, Joel Wirz, Weihong Qi, Hubert Rehrauer, Verena Kufner, Gabriela Ziltener, Maryam Zaheri, Stefan Schmutz, Annette Audigé, Maria Grünberg, Kevin Steiner, Jon Huder, Cyril Shah, Riccarda Capaul, Guido Bloemberg, Jürg Böni, Michael Huber, Alexandra Trkola

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba62e77/2022

characteristic: isolate

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characteristic: title


characteristic: ENA-LAST-UPDATE

text: University of Zurich

characteristic: INSDC center name

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text: public

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tag: Namespace:University of Zurich

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: IHU - Mediterranee Infection

text: public

tag: Namespace:IHU - Mediterranee Infection

text: Pseudomonas provencensis was isolated from a under skin prelevement of a healthy patient.

text: Pseudomonas sp. Marseille-Q0931

characteristic: organism

text: Pseudomonas sp. Marseille-Q0931

characteristic: strain

text: Pseudomonas provencensis genome


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IHU - Mediterranee Infection

characteristic: INSDC first public

text: public

text: Bacterial genomes of new species in clinical microbiology

text: Neisseria sp. Marseille-Q2251

text: Neisseria sp. Marseille-Q2251

text: New bacterial species in clinical microbiology


text: IHU - Mediterranee Infection

text: public

characteristic: SRA accession

text: Gardnerella sp. Marseille-Q2328

text: Gardnerella sp. Marseille-Q2328

text: Gardnerella massiliensis genome


text: IHU - Mediterranee Infection

text: public

text: Mixta timonensis was isolated from urine of healthy patient.

text: Mixta sp. Marseille-Q2659

text: Mixta sp. Marseille-Q2659

text: Mixta timonensis genome


text: IHU - Mediterranee Infection

text: public

text: Dermabacter sp. Marseille-Q3180

text: Dermabacter sp. Marseille-Q3180

text: Dermabacter sp. Marseille-Q3180 genome


text: IHU - Mediterranee Infection

text: public

text: Chryseobacterium sp. Marseille-Q3244

text: Chryseobacterium sp. Marseille-Q3244

text: Chryseobacterium sp. Marseille-Q3244 genome


text: IHU - Mediterranee Infection

text: public

text: Streptococcus sp. Marseille-Q3533

text: Streptococcus sp. Marseille-Q3533

text: Streptococcus sp. Marseille-Q3533 genome


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TG

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text: Human

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text: restricted access

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text: Homo sapiens

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text: restricted access

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text: hCoV-19/Switzerland/TG-UHB-43471097/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43476615/2022

characteristic: organism

characteristic: sample capture status

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characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

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text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

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text: Switzerland

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43458051/2022


characteristic: ENA-CHECKLIST

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text: University Hospital Basel

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characteristic: isolate


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characteristic: GISAID Accession ID

text: University Hospital Basel

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: SIB

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text: BS

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text: hCoV-19/Switzerland/BS-UHB-43467682/2022

characteristic: organism

characteristic: sample capture status

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characteristic: collecting institution

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text: Switzerland

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text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43456145/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

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text: public

text: SIB

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text: JU

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text: hCoV-19/Switzerland/JU-UHB-43468697/2022

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text: University Hospital Basel

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characteristic: Submitter Id

text: SIB

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text: BS

text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43445152/2022

characteristic: organism

characteristic: sample capture status

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characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

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text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

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text: Switzerland

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text: BS

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43470950/2022


characteristic: ENA-CHECKLIST

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text: CEBITEC

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text: public

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text: Complete genome sequence of Clostridium coliseum DSM6011T

characteristic: description

text: [Clostridium] colinum

characteristic: organism

text: [Clostridium] colinum

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characteristic: title


A 4/2

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text: public

text: A 4/2

text: Draft genome sequence of Streptomyces sp. A 4/2

text: Streptomyces sp. A 4/2

text: Streptomyces sp. A 4/2

text: A 4/2


text: CEBITEC

text: public

text: Complete genome sequence of Clostridium sp. M3/9

text: Clostridium sp. M3/9

text: Clostridium sp. M3/9


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

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text: hCoV-19/Ireland/CN-NVRL-S22IRL00166937/2022

characteristic: virus identifier


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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: SRA accession

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00166941/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00166931/2022

characteristic: virus identifier


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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: NVRL

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/CN-NVRL-S22IRL00166907/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00166918/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/CN-NVRL-S22IRL00166947/2022

characteristic: title


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

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text: human

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text: Homo sapiens

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text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Cork

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text: Homo sapiens

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characteristic: title


text: NVRL

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text: Europe / Ireland / Cork

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text: human

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text: not provided

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text: Homo sapiens

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text: female

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text: Europe / Ireland / Cork

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text: Homo sapiens

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text: NVRL

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: Europe / Ireland / Carlow

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: Homo sapiens

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text: male

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text: not provided

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text: hCoV-19/Ireland/CW-NVRL-S22IRL00168378/2022

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text: Irish Consortium for Sequencing Covid

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text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Carlow

text: human

text: not provided

text: not provided

text: Homo sapiens

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/CW-NVRL-S22IRL00168466/2022

characteristic: title


text: NVRL

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text: National Virus Reference Laboratory

characteristic: collection date

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text: Human coronavirus 2019

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: Europe / Ireland / Carlow

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: Homo sapiens

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text: male

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text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-S22IRL00169782/2022

characteristic: title


text: NVRL

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text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: not provided

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text: Homo sapiens

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text: male

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text: not provided

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text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Dublin

text: human

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text: not provided

text: Homo sapiens

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characteristic: host subject id

text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/D-NVRL-S22IRL00280540/2022

characteristic: title


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: Europe / Ireland / Dublin

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text: human

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text: Homo sapiens

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text: Severe acute respiratory syndrome coronavirus 2

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text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Dublin

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text: not provided

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text: active surveillance in response to outbreak

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characteristic: title


text: NVRL

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text: National Virus Reference Laboratory

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text: not provided

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text: Ireland

characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: human

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text: Homo sapiens

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text: female

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text: not provided

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text: Europe / Ireland / Dublin

text: human

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text: not provided

text: Homo sapiens

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text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/D-NVRL-S22IRL00279580/2022

characteristic: title


text: NVRL

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text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

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text: Ireland

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characteristic: geographic location (latitude)

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text: Europe / Ireland / Dublin

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text: human

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text: Homo sapiens

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text: male

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text: not provided

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text: not provided

text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-S22IRL00279194/2022

characteristic: title


text: NVRL

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text: Europe / Ireland / Dublin

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text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-S22IRL00278736/2022

characteristic: title


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

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text: Europe / Ireland / Dublin

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text: human

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text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-S22IRL00279961/2022

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text: National Virus Reference Laboratory

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text: not provided

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text: Europe / Ireland / Dublin

text: human

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text: not provided

text: Homo sapiens

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text: hCoV-19/Ireland/D-NVRL-S22IRL00279197/2022

characteristic: title


text: NVRL

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text: Europe / Ireland / Dublin

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text: Homo sapiens

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text: NVRL

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: Homo sapiens

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characteristic: title


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text: active surveillance in response to outbreak

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text: Europe / Ireland / Dublin

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characteristic: virus identifier


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text: not provided

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text: Europe / Ireland / Dublin

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text: not provided

text: not provided

text: Homo sapiens

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characteristic: host subject id

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text: hCoV-19/Ireland/D-NVRL-S22IRL00279228/2022

characteristic: title


text: NVRL

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characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

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text: female

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text: hCoV-19/Ireland/D-NVRL-S22IRL00279562/2022

characteristic: virus identifier


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characteristic: broker name

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