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text: public

characteristic: INSDC status

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024YT nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Centre National de Recherche en Genomique Humaine (CNRGH)

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024YU nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

text: Centre National de Recherche en Genomique Humaine (CNRGH)

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characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024YV nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024YW nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: not provided

characteristic: host health state

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text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024YZ nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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characteristic: host health state

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text: public

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characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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characteristic: description

text: France

text: Human

text: not provided

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text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: public

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024Z2 nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

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text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024Z4 nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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characteristic: ENA-CHECKLIST

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024Z5 nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024Z6 nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

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text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

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text: public

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024Z7 nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024Z8 nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

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text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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characteristic: organism


characteristic: ENA-CHECKLIST

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZB nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZC nasopharyngeal swab

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text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

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text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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text: public

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZD nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZE nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: France

text: Human

text: not provided

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text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZG nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZH nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

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text: not provided

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text: not provided

text: not provided

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

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characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZK nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: public

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: France

text: Human

text: not provided

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text: not provided

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text: not provided

text: not provided

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text: public

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZM nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZN nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZO nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

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text: not provided

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text: not provided

text: not provided

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text: public

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text: not provided

text: C0024ZP nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZQ nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: public

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

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text: France

text: Human

text: not provided

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text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZS nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

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text: not provided

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text: not provided

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characteristic: ENA-CHECKLIST

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text: public

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text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZT nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZU nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

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text: not provided

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text: not provided

text: not provided

characteristic: receipt date

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text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZV nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

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text: not provided

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characteristic: organism


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text: public

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZW nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZX nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

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characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C0024ZY nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

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characteristic: organism


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C0024ZZ nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002500 nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

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characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002501 nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C002502 nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002503 nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002504 nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C002505 nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002506 nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002507 nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C002508 nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C002509 nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250A nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C00250B nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250C nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250D nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C00250E nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250F nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250G nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: CHU Lille (Laboratoire de Virologie)

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: C00250H nasopharyngeal swab

text: France

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250I nasopharyngeal swab

text: France

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CHU Lille (Laboratoire de Virologie)

text: not provided

text: C00250J nasopharyngeal swab

characteristic: description

text: France

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: isolate

text: not provided

characteristic: isolation source non-host-associated

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EDINBURGH

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF EDINBURGH

characteristic: Submitter Id

text: African queen

characteristic: common name

text: Female, mother of brood SB211

text: Danaus chrysippus

text: Danaus chrysippus


text: UNIVERSITY OF EDINBURGH

text: public

text: African queen

text: Male, father of brood SB211

text: Danaus chrysippus

text: Danaus chrysippus

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF EDINBURGH

text: public

text: African queen

text: Female pupa, brood SB211

text: Danaus chrysippus

text: Danaus chrysippus


text: UNIVERSITY OF EDINBURGH

characteristic: INSDC first public

text: public

text: African queen

text: Female, aunt of brood MB181

text: Danaus chrysippus

text: Danaus chrysippus


text: UNIVERSITY OF EDINBURGH

characteristic: INSDC last update

text: public

text: African queen

text: Male, father of brood MB181, Watamu, Kenya; -3.33, 40.02

text: Danaus chrysippus

text: Danaus chrysippus


text: UNIVERSITY OF EDINBURGH

text: public

characteristic: INSDC status

text: African queen

text: Female, brood MB181

text: Danaus chrysippus

text: Danaus chrysippus


text: UNIVERSITY OF EDINBURGH

text: public

characteristic: SRA accession

text: Male, Karen, Kenya; -1.304, 36.693

text: Tirumala formosa

text: Tirumala formosa


text: UNIVERSITY OF SZEGED

text: public

tag: Namespace:UNIVERSITY OF SZEGED

text: Rabbit Kidney cell line (RK-13/35)

characteristic: cell line

characteristic: collection date

text: Equine herpesvirus 1

characteristic: description

text: phoetus

characteristic: dev stage

text: Hungary

characteristic: geographic location (country and/or sea)

text: Szilvasvarad, Marocpuszta, National Stud Farm

characteristic: geographic location (region and locality)

text: Equus ferus

characteristic: host scientific name

text: foal

characteristic: isolation source

characteristic: lab host

text: Equid alphaherpesvirus 1

text: Equid alphaherpesvirus 1

text: lung, kidney, liver

characteristic: tissue type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Rabbit Kidney cell line (RK-13/35)

text: rabbit

characteristic: common name

text: n.a.

text: Hungary

text: Budapest, University of Veterinary Medicine

characteristic: isolate

text: adult

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: kidney


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF VIENNA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF VIENNA

text: Transcripome during diauxic growth of P. aeruginosa

text: Basal-Salt medium (BSM) (30.8 mM K2HPO4, 19.3 mM KH2PO4, 15 mM (NH4)SO4, 1 mM MgCl2 and 2 �M FeSO4) supplemented with 5 mM succinate and 40 mM mannitol. Cultures were grown to an OD600 of 0.4 (timepoint 1), 0.7 (timepoint 2) and 1.2 (timepoint 3).

characteristic: growth condition

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

characteristic: title


text: UNIVERSITY OF VIENNA

text: public

text: Translatome during diauxic growth of P. aeruginosa

characteristic: description

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: University of Oxford

text: public

tag: Namespace:University of Oxford

text: rock pigeon

text: This sample has been submitted as part of the Rock Dove Genomics project, University of Oxford; Columba livia

text: Feral domestic

characteristic: ecotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Columba livia

text: Columba livia

text: Feather calamus

characteristic: tissue type

text: Feral Pigeon Oxford


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: public

text: rock pigeon

text: Feral domestic

text: United Kingdom

text: Columba livia

text: Columba livia

text: Pectoral muscle tissue

text: Feral Pigeon Manchester


text: University of Oxford

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: rock pigeon

characteristic: common name

text: Feral domestic

text: United Kingdom

text: Columba livia

text: Columba livia

text: Pectoral muscle tissue

text: Feral Pigeon Charnwood


characteristic: ENA-CHECKLIST

text: University of Oxford

text: public

text: rock pigeon

text: Feral domestic

text: United Kingdom

text: Columba livia

characteristic: organism

text: Columba livia

text: Feather calamus

text: Feral Pigeon Charnwood


text: University of Oxford

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: rock pigeon

text: Feral domestic

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Feral Pigeon Isle of Man


text: University of Oxford

text: public

characteristic: INSDC status

characteristic: SRA accession

text: rock pigeon

text: Feral domestic

text: United Kingdom

text: Columba livia

text: Columba livia

text: Pectoral muscle tissue

text: Feral Pigeon Isle of Man


text: University of Oxford

text: public

text: rock pigeon

text: Feral domestic

text: United Kingdom

text: Columba livia

text: Columba livia

text: Pectoral muscle tissue

text: Feral Pigeon Yorkshire

characteristic: title


text: University of Oxford

text: public

text: rock pigeon

characteristic: description

text: Wild/ancestral-type

text: Ireland

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Cape Clear Island


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

characteristic: ecotype

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Birsay


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Haster


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

characteristic: tissue type

text: Rock Dove Marwick


characteristic: ENA-FIRST-PUBLIC

text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Rendall


Rendall B_Columba_livia

characteristic: ENA-LAST-UPDATE

text: University of Oxford

text: public

text: Rendall B_Columba_livia

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Rendall


characteristic: External Id

text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Sandwick (Orkney)


text: University of Oxford

characteristic: INSDC center name

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove (Smoo Cave)


text: University of Oxford

text: public

characteristic: Submitter Id

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove South Ron


text: University of Oxford

text: public

text: rock pigeon

characteristic: common name

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Stromness


characteristic: ENA-CHECKLIST

text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Voy


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

characteristic: organism

text: Columba livia

text: Feather calamus

text: Rock Dove Wick


text: University of Oxford

characteristic: INSDC first public

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Yesnaby


text: University of Oxford

characteristic: INSDC last update

text: public

text: rock pigeon

text: Feral domestic

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Lerwick


text: University of Oxford

text: public

characteristic: INSDC status

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Lerwick


text: University of Oxford

text: public

characteristic: SRA accession

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Shetland Sandwick


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Arran

characteristic: title


text: University of Oxford

text: public

text: rock pigeon

characteristic: description

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Mull


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

characteristic: ecotype

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Skye


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Tiree


text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

characteristic: tissue type

text: Rock Dove Lewis


characteristic: ENA-FIRST-PUBLIC

text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove North Uist


characteristic: ENA-LAST-UPDATE

text: University of Oxford

text: public

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove South Uist


Vallay_A_Columba _livia

characteristic: External Id

text: University of Oxford

text: public

text: Vallay_A_Columba _livia

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Vallay


Vallay_B_Columba _livia

text: University of Oxford

characteristic: INSDC center name

text: public

text: Vallay_B_Columba _livia

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Vallay


Vallay_C_Columba _livia

text: University of Oxford

text: public

text: Vallay_C_Columba _livia

characteristic: Submitter Id

text: rock pigeon

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Vallay


text: University of Oxford

text: public

text: rock pigeon

characteristic: common name

text: Wild/ancestral-type

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Vallay


characteristic: ENA-CHECKLIST

text: University of Oxford

text: public

text: rock pigeon

text: Unknown (captive bird)

text: United Kingdom

text: Columba livia

text: Columba livia

text: Feather calamus

text: Rock Dove Captive


Tfree

text: Rudjer Boskovic Institute

text: public

text: Tfree

tag: Namespace:Rudjer Boskovic Institute

text: pooled male and female larvae

text: Tribolium freemani

characteristic: organism

text: Tribolium freemani

text: laboratory culture of Tribolium freemani flour-beetle


E-MTAB-11636:Sample 12

characteristic: INSDC first public

text: public

text: E-MTAB-11636:Sample 12

tag: Namespace:Departments of Physiology and Medicine University of Toronto

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: type L enteroendocrine cell

characteristic: cell type

text: house mouse

text: Protocols: Ileal epithelial cells were dispersed and Venus+ L cells collected by FACS One group of mice was fed Research Diet #D12450J for 10 wk (regular chow). One group of mice was fed Research Diet #12492 (high-fat) for 10 weeks with administration of streptozotocin (35 mg/kg) for 5 days in week 6. RNeasy PlusMicro with DNAse NEB Next Ultra2 Directional RNAseq with rRNA depletion

text: adult

characteristic: developmental stage

text: high-fat diet/streptozotocin

characteristic: diet

text: type 2 diabetes mellitus

characteristic: disease

text: Gcg-Venus

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 12


E-MTAB-11636:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Departments of Physiology and Medicine University of Toronto

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11636:Sample 15

text: ArrayExpress

text: type L enteroendocrine cell

text: house mouse

characteristic: description

text: adult

text: high-fat diet/streptozotocin

text: type 2 diabetes mellitus

text: Gcg-Venus

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: male

text: Sample 15

characteristic: title


E-MTAB-11636:Sample 16

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11636:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: type L enteroendocrine cell

text: house mouse

characteristic: common name

text: adult

text: high-fat diet/streptozotocin

text: type 2 diabetes mellitus

text: Gcg-Venus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

text: Sample 16


E-MTAB-11636:Sample 3

text: public

text: E-MTAB-11636:Sample 3

text: ArrayExpress

text: type L enteroendocrine cell

characteristic: cell type

text: house mouse

text: adult

characteristic: developmental stage

text: high-fat diet/streptozotocin

characteristic: diet

text: type 2 diabetes mellitus

characteristic: disease

text: Gcg-Venus

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 3


E-MTAB-11636:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11636:Sample 4

text: ArrayExpress

text: type L enteroendocrine cell

text: house mouse

characteristic: description

text: adult

text: high-fat diet/streptozotocin

text: type 2 diabetes mellitus

text: Gcg-Venus

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

text: Sample 4

characteristic: title


E-MTAB-11636:Sample 7

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11636:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: type L enteroendocrine cell

text: house mouse

characteristic: common name

text: adult

text: high-fat diet/streptozotocin

text: type 2 diabetes mellitus

text: Gcg-Venus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: male

text: Sample 7


E-MTAB-11636:Sample 8

text: public

text: E-MTAB-11636:Sample 8

text: ArrayExpress

text: type L enteroendocrine cell

characteristic: cell type

text: house mouse

text: adult

characteristic: developmental stage

text: high-fat diet/streptozotocin

characteristic: diet

text: type 2 diabetes mellitus

characteristic: disease

text: Gcg-Venus

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 8


E-MTAB-11636:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11636:Sample 1

text: ArrayExpress

text: type L enteroendocrine cell

text: house mouse

characteristic: description

text: adult

text: regular chow

text: normal

text: Gcg-Venus

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: male

text: Sample 1

characteristic: title


E-MTAB-11636:Sample 10

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11636:Sample 10

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: type L enteroendocrine cell

text: house mouse

characteristic: common name

text: adult

text: regular chow

text: normal

text: Gcg-Venus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

text: Sample 10


E-MTAB-11636:Sample 13

text: public

text: E-MTAB-11636:Sample 13

text: ArrayExpress

text: type L enteroendocrine cell

characteristic: cell type

text: house mouse

text: adult

characteristic: developmental stage

text: regular chow

characteristic: diet

text: normal

characteristic: disease

text: Gcg-Venus

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 13


E-MTAB-11636:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11636:Sample 14

text: ArrayExpress

text: type L enteroendocrine cell

text: house mouse

characteristic: description

text: adult

text: regular chow

text: normal

text: Gcg-Venus

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

text: Sample 14

characteristic: title


E-MTAB-11636:Sample 2

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11636:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: type L enteroendocrine cell

text: house mouse

characteristic: common name

text: adult

text: regular chow

text: normal

text: Gcg-Venus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

text: Sample 2


E-MTAB-11636:Sample 5

text: public

text: E-MTAB-11636:Sample 5

text: ArrayExpress

text: type L enteroendocrine cell

characteristic: cell type

text: house mouse

text: adult

characteristic: developmental stage

text: regular chow

characteristic: diet

text: normal

characteristic: disease

text: Gcg-Venus

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 5


E-MTAB-11636:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11636:Sample 6

text: ArrayExpress

text: type L enteroendocrine cell

text: house mouse

characteristic: description

text: adult

text: regular chow

text: normal

text: Gcg-Venus

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

text: Sample 6

characteristic: title


E-MTAB-11636:Sample 9

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11636:Sample 9

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: type L enteroendocrine cell

text: house mouse

characteristic: common name

text: adult

text: regular chow

text: normal

text: Gcg-Venus

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: male

text: Sample 9


E-MTAB-11639:Sample 1

text: IP

text: public

text: E-MTAB-11639:Sample 1

text: ArrayExpress

text: Protocols: Streptococcus agalactiae strain A909 WT and its isogenic mutant ∆ccpA, obtained by allelic exchange thanks to the plasmid pG+host1ts, were used for this study. Strains were grown in filter-sterilized chemically defined medium (CDM) supplemented with 0,25% or 1% (w/v) of glucose. Bacterial cultures were incubated statically at 37°C until they reached mid-exponential phase (OD600≈0.45 for the A909WT and OD600≈0.3 for A909∆ccpA), and then harvested by centrifugation at 4°C for 10 minutes.For each condition triplicate cultures were obtained Bacterial pellets were resuspended in a buffer and lysed mechanically with glass beads in a FastPrep-24 instrument, and total RNAs were extracted with a phenol/TRIzol-based purification method. Total RNAs were then treated by DNAse (Turbo DNA-free DNase; Ambion) according to the manufacturer’s instructions, and then tested by PCR with gyrB primers to check for DNA contamination. RNA quality was controled on Agilent 2100 Bioanalyzer with RNA 6000 nanochip and only RNA with RNA Integrity Number (RIN) higher than 9 was used RNA sample were depleted in ribosomal RNAs by using the MICROBExpress bacterial mRNA enrichment kit and rRNA depletion was controled on Agilent Bioanalyzer. For each of the strand-specific RNA-seq library preparation, depleted RNA corresponding to 1 µg of total RNA was used. RNA was treated with TAP (Tebu-Bio), fragmented using the RNA fragmentation Reagent kit (Ambion). Dephosphorylation of the fragmented RNA by using the antarctic phosphatase (Biolabs), and rephosphorylation with the T4 polynucleotide kinase (Biolabs) were followed by a purification step through RNeasy MinElute Cleanup columns (Qiagen). The RNA was then successively ligated to the 3′ RNA adapter (Illumina TruSeq Small RNA kit) by using truncated T4 RNA ligase 2 (Biolabs) and to the 5′ RNA adapter (Illumina TruSeq Small RNA kit) with T4 RNA ligase (Biolabs). RNA ligated to the two adapters was reverse-transcribed with the Superscript II Reverse Transcriptase (Life Technologies) and the RNA reverse transcription primer (Illumina TruSeq Small RNA kit). The resulting cDNAs were amplified for 13 PCR cycles with Phusion Taq polymerase using the RP1 primer and one of the indexed PCR primers (Illumina TruSeq Small RNA kit).

text: delta-ccpA

characteristic: genotype

text: CDM + 1 % glucose

characteristic: growth condition

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: strain

text: Sample 1


E-MTAB-11639:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IP

text: public

text: E-MTAB-11639:Sample 10

text: ArrayExpress

text: wild type genotype

text: CDM + 0.25 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 10


E-MTAB-11639:Sample 11

text: IP

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11639:Sample 11

text: ArrayExpress

text: wild type genotype

text: CDM + 0.25 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 11


E-MTAB-11639:Sample 12

characteristic: ENA-CHECKLIST

text: IP

text: public

text: E-MTAB-11639:Sample 12

text: ArrayExpress

characteristic: description

text: wild type genotype

text: CDM + 0.25 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 12

characteristic: title


E-MTAB-11639:Sample 2

text: IP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11639:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: delta-ccpA

text: CDM + 1 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 2


E-MTAB-11639:Sample 3

text: IP

text: public

text: E-MTAB-11639:Sample 3

text: ArrayExpress

characteristic: broker name

text: delta-ccpA

text: CDM + 1 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 3


E-MTAB-11639:Sample 4

text: IP

text: public

text: E-MTAB-11639:Sample 4

text: ArrayExpress

text: delta-ccpA

text: CDM + 0.25 % glucose

text: Streptococcus agalactiae

characteristic: organism

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 4


E-MTAB-11639:Sample 5

text: IP

text: public

text: E-MTAB-11639:Sample 5

text: ArrayExpress

text: delta-ccpA

characteristic: genotype

text: CDM + 0.25 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 5


E-MTAB-11639:Sample 6

text: IP

text: public

text: E-MTAB-11639:Sample 6

text: ArrayExpress

text: delta-ccpA

text: CDM + 0.25 % glucose

characteristic: growth condition

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 6


E-MTAB-11639:Sample 7

text: IP

text: public

text: E-MTAB-11639:Sample 7

text: ArrayExpress

text: wild type genotype

text: CDM + 1 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: strain

text: Sample 7


E-MTAB-11639:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: IP

text: public

text: E-MTAB-11639:Sample 8

text: ArrayExpress

text: wild type genotype

text: CDM + 1 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 8


E-MTAB-11639:Sample 9

characteristic: ENA-LAST-UPDATE

text: IP

text: public

text: E-MTAB-11639:Sample 9

text: ArrayExpress

text: wild type genotype

text: CDM + 1 % glucose

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Sample 9


text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles funestus

text: Anopheles funestus

characteristic: subject id


text: Anopheles gambiae

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:604-34517

tag: Namespace:FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

characteristic: collection date

text: isolate

characteristic: description

text: No

characteristic: environmental sample

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Islamabad

characteristic: geographic location (region and locality)

text: not collected

characteristic: host health state

text: Equus caballus

characteristic: host scientific name

characteristic: isolate

text: Horse

characteristic: isolation source

text: Burkholderia mallei

text: Burkholderia mallei

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:604-34518

characteristic: Submitter Id

text: isolate

text: No

text: Pakistan

text: Kashmir

text: not collected

text: Equus asinus � Equus caballus

text: Mule

text: Burkholderia mallei

characteristic: organism

text: Burkholderia mallei

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:604-34519

text: isolate

text: No

text: Pakistan

text: Islamabad

text: not collected

text: Equus caballus

text: Horse

text: Burkholderia mallei

text: Burkholderia mallei


text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:604-34520

characteristic: collection date

text: isolate

characteristic: description

text: No

characteristic: environmental sample

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Islamabad

characteristic: geographic location (region and locality)

text: not collected

characteristic: host health state

text: Equus caballus

text: Horse

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34521

text: isolate

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus asinus � Equus caballus

characteristic: host scientific name

characteristic: isolate

text: Mule

characteristic: isolation source

text: Burkholderia mallei

text: Burkholderia mallei

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34522

characteristic: Submitter Id

text: isolate

text: No

text: Pakistan

text: Lahore

text: not collected

text: Equus caballus

text: Horse

text: Burkholderia mallei

characteristic: organism

text: Burkholderia mallei

characteristic: strain


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34523

characteristic: collection date

text: isolate

characteristic: description

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus caballus

text: Horse

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34524

text: isolate

text: No

characteristic: environmental sample

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Faisalabad

characteristic: geographic location (region and locality)

text: not collected

characteristic: host health state

text: Equus asinus � Equus caballus

text: Mule

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34525

text: isolate

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus asinus

characteristic: host scientific name

characteristic: isolate

text: Donkey

characteristic: isolation source

text: Burkholderia mallei

text: Burkholderia mallei

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34526

characteristic: Submitter Id

text: isolate

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus caballus

text: Horse

text: Burkholderia mallei

characteristic: organism

text: Burkholderia mallei

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34527

characteristic: collection date

text: isolate

characteristic: description

text: No

text: Pakistan

text: Sargodha

text: not collected

text: Equus caballus

text: Horse

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34528

text: isolate

text: No

characteristic: environmental sample

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Sargodha

characteristic: geographic location (region and locality)

text: not collected

characteristic: host health state

text: Equus caballus

text: Horse

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34529

text: isolate

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus caballus

characteristic: host scientific name

characteristic: isolate

text: Horse

characteristic: isolation source

text: Burkholderia mallei

text: Burkholderia mallei

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34530

characteristic: Submitter Id

text: isolate

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus caballus

text: Horse

text: Burkholderia mallei

characteristic: organism

text: Burkholderia mallei

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34531

characteristic: collection date

text: isolate

characteristic: description

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus asinus

text: Donkey

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34532

text: isolate

text: No

characteristic: environmental sample

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Faisalabad

characteristic: geographic location (region and locality)

text: not collected

characteristic: host health state

text: Equus asinus � Equus caballus

text: Mule

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34533

text: isolate

text: No

text: Pakistan

text: Faisalabad

text: not collected

text: Equus asinus � Equus caballus

characteristic: host scientific name

characteristic: isolate

text: Mule

characteristic: isolation source

text: Burkholderia mallei

text: Burkholderia mallei

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34534

characteristic: Submitter Id

text: not collected

text: isolate

text: No

text: Pakistan

text: not collected

text: Burkholderia mallei

characteristic: organism

text: Burkholderia mallei

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34535

characteristic: collection date

text: isolate

characteristic: description

text: No

text: Pakistan

text: Sargodha

text: not collected

text: Equus asinus � Equus caballus

text: Mule

text: Burkholderia mallei

text: Burkholderia mallei


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34536

text: isolate

text: No

characteristic: environmental sample

text: India

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Equus caballus

text: Mukteswar

text: Horse

text: Burkholderia mallei

text: Burkholderia mallei

text: Mukteswar

text: Mukteswar


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:605-34537

text: not collected

text: isolate

text: No

text: not collected

text: not collected

text: BfR 242

characteristic: isolate

text: Burkholderia mallei

text: Burkholderia mallei

text: BfR 242

text: BfR 242

characteristic: title


characteristic: External Id

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:606-34538

characteristic: Submitter Id

text: isolate

text: No

text: United Kingdom

text: London

characteristic: geographic location (region and locality)

text: not collected

text: Equus caballus

characteristic: host scientific name

text: NCTC 120

text: Horse

characteristic: isolation source

text: Burkholderia mallei

text: Burkholderia mallei

text: NCTC 120

text: NCTC 120


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-14-04-2022-09:53:36:606-34539

text: isolate

text: No

text: not collected

text: not collected

text: Burkholderia mallei

characteristic: organism

text: Burkholderia mallei

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UFZ

text: public

characteristic: Order-study

characteristic: RTR

characteristic: collection date

text: Diverse community

characteristic: condition

characteristic: date

text: inoculum

characteristic: description

text: anaerobic bioreactor

characteristic: environment (biome)

text: reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured prokaryote

text: The microbial community behind efficient mixotrophic chain elongation

characteristic: project name

characteristic: reactor

characteristic: sampling time

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: sequencing method

text: 29-04-20-R3.1 DBFZ-MF12-inoc


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UFZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Order-study

characteristic: RTR

characteristic: SRA accession

characteristic: Submitter Id

text: Diverse community

text: normal

text: anaerobic bioreactor

text: reactor

text: sludge

text: Germany

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: title


text: UFZ

text: public

characteristic: collection date

text: Enriched community

characteristic: condition

characteristic: date

text: inoculum

characteristic: description

text: anaerobic bioreactor

characteristic: environment (biome)

text: reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured prokaryote

characteristic: project name

characteristic: reactor

text: uncultured prokaryote

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UFZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Order-study

characteristic: RTR

characteristic: SRA accession

characteristic: Submitter Id

text: Enriched community

text: normal

text: anaerobic bioreactor

text: reactor

text: sludge

text: Germany

text: uncultured prokaryote

characteristic: sampling time

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: sequencing method


text: UFZ

text: public

characteristic: collection date

text: Feed interval=24 h

characteristic: condition

characteristic: date

text: normal

characteristic: description

text: anaerobic bioreactor

characteristic: environment (biome)

text: reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UFZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Order-study

characteristic: RTR

characteristic: SRA accession

characteristic: Submitter Id

text: Feed interval=96 h

text: normal

text: anaerobic bioreactor

text: reactor

text: sludge

text: Germany

text: uncultured prokaryote

characteristic: project name

characteristic: reactor

text: uncultured prokaryote

text: Illumina MiSeq


text: UFZ

text: public

characteristic: collection date

text: 200 mM acetate feed

characteristic: condition

characteristic: date

text: normal

characteristic: description

text: anaerobic bioreactor

characteristic: environment (biome)

text: reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured prokaryote

characteristic: sampling time

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UFZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Order-study

characteristic: RTR

characteristic: SRA accession

characteristic: Submitter Id

text: Acetate-free feed

text: normal

text: anaerobic bioreactor

text: reactor

text: sludge

text: Germany

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: title


text: UFZ

text: public

characteristic: collection date

text: HRT 14 d

characteristic: condition

characteristic: date

text: normal

characteristic: description

text: anaerobic bioreactor

characteristic: environment (biome)

text: reactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured prokaryote

characteristic: project name

characteristic: reactor

text: uncultured prokaryote

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UFZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Order-study

characteristic: RTR

characteristic: SRA accession

characteristic: Submitter Id

text: HRT 10 d

text: normal

text: anaerobic bioreactor

text: reactor

text: sludge

text: Germany

text: uncultured prokaryote

characteristic: sampling time

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: sequencing method


E-MTAB-11649:Sample 1

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 1

tag: Namespace:Wageningen University and Research

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: Root systems were separated from leaves and removed from the medium. The root systems were immediately snap frozen in liquid nitrogen. Before processing to nucleic acid extraction, root tissue was ground in liquid nitrogen. Plants (Col-0, tcp9, tcp20, and tcp9tcp20) were grown on modified Knop's medium for 4 days in 16/8 hours light/dark at 21 degrees Celsius. After 4 days plants were (mock) inoculated with Heterodera schachtii. Treatments ended 24, 48 or 72 hours after the start of the inoculation. Approximately 80 plants/sample were collected and the experiment was repeated three times. The Maxwell® 16 Tissue LEV plant RNA kit was used for mRNA isolation with a Maxwell® AS2000 instrument (Promega), following the manufacturer’s protocol. After the total RNA extraction and DNase I treatment, magnetic beads with Oligo (dT) are used to isolate mRNA. Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. The suitable fragments are size-selected for the PCR amplification as templates. During the QC steps, Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR System are used in quantification and qualification of the sample library.

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mock inoculation

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-11649:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11649:Sample 10

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-11649:Sample 11

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11649:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 11


E-MTAB-11649:Sample 12

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 12

text: ArrayExpress

text: thale cress

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mock inoculation

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-11649:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 13

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

characteristic: strain

text: Sample 13

characteristic: title


E-MTAB-11649:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11649:Sample 14

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 14


E-MTAB-11649:Sample 15

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11649:Sample 15

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 15


E-MTAB-11649:Sample 16

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 16

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mock inoculation

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 16


E-MTAB-11649:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 17

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

characteristic: strain

text: Sample 17


E-MTAB-11649:Sample 18

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11649:Sample 18

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 18

characteristic: title


E-MTAB-11649:Sample 19

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11649:Sample 19

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 19


E-MTAB-11649:Sample 2

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 2

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-11649:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 20

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 20


E-MTAB-11649:Sample 21

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11649:Sample 21

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

characteristic: strain

text: Sample 21


E-MTAB-11649:Sample 22

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11649:Sample 22

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 22

characteristic: title


E-MTAB-11649:Sample 23

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 23

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 23


E-MTAB-11649:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 24

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

characteristic: genotype

text: Heterodera schachtii

characteristic: infect

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 24


E-MTAB-11649:Sample 25

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11649:Sample 25

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 25


E-MTAB-11649:Sample 26

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11649:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

characteristic: strain

text: Sample 26


E-MTAB-11649:Sample 27

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 27

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 27

characteristic: title


E-MTAB-11649:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 28

text: ArrayExpress

text: thale cress

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Heterodera schachtii

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 28


E-MTAB-11649:Sample 29

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11649:Sample 29

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 29


E-MTAB-11649:Sample 3

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11649:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: mock inoculation

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 3


E-MTAB-11649:Sample 30

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 30

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

characteristic: strain

text: Sample 30


E-MTAB-11649:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 31

text: ArrayExpress

text: thale cress

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 31

characteristic: title


E-MTAB-11649:Sample 32

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11649:Sample 32

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

characteristic: infect

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 32


E-MTAB-11649:Sample 33

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11649:Sample 33

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 33


E-MTAB-11649:Sample 34

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 34

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 34


E-MTAB-11649:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11649:Sample 35

text: ArrayExpress

text: thale cress

text: seedling development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

characteristic: strain

text: Sample 35


E-MTAB-11649:Sample 36

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11649:Sample 36

text: ArrayExpress

text: thale cress

text: seedling development stage

text: wild type genotype

text: Heterodera schachtii

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana

text: Sample 36

characteristic: title