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characteristic: organism

text: human feces metagenome

text: Illumina

text: pregnant mother stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: Stool sample from a pregnant mother #396 collected during pregnancy

characteristic: description

text: urban biome (ENVO:01000249)

characteristic: environment (biome)

text: fecal environment (ENVO:01001029)

characteristic: environment (feature)

text: fecal material (ENVO:00002003)

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: pregnant mother

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: pregnant mother stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Stool sample from a pregnant mother #484 collected during pregnancy

text: urban biome (ENVO:01000249)

text: fecal environment (ENVO:01001029)

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: female

text: human-gut

text: metagenome

text: pregnant mother

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: pregnant mother stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: Stool sample from a pregnant mother #525 collected during pregnancy

characteristic: description

text: urban biome (ENVO:01000249)

characteristic: environment (biome)

text: fecal environment (ENVO:01001029)

characteristic: environment (feature)

text: fecal material (ENVO:00002003)

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host sex

text: human-gut

text: metagenome

text: pregnant mother

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: pregnant mother stool sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Stool sample from a pregnant mother #528 collected during pregnancy

text: urban biome (ENVO:01000249)

text: fecal environment (ENVO:01001029)

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: female

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: pregnant mother

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: pregnant mother stool sample


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: Stool sample from a pregnant mother #89 collected during pregnancy

characteristic: description

text: urban biome (ENVO:01000249)

characteristic: environment (biome)

text: fecal environment (ENVO:01001029)

characteristic: environment (feature)

text: fecal material (ENVO:00002003)

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: human-gut

text: metagenome

text: pregnant mother

characteristic: miscellaneous parameter

text: human feces metagenome

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: pregnant mother stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Stool sample from a pregnant mother #90 collected during pregnancy

text: urban biome (ENVO:01000249)

text: fecal environment (ENVO:01001029)

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

text: female

characteristic: host sex

text: human-gut

text: metagenome

text: pregnant mother

text: human feces metagenome

characteristic: organism

text: human feces metagenome

text: Illumina

text: pregnant mother stool sample

characteristic: title


text: University of Helsinki

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: Stool sample from a pregnant mother #93 collected during pregnancy

characteristic: description

text: urban biome (ENVO:01000249)

characteristic: environment (biome)

text: fecal environment (ENVO:01001029)

characteristic: environment (feature)

text: fecal material (ENVO:00002003)

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: feces (UBERON:0001988)

characteristic: host body product

text: female

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: pregnant mother

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: pregnant mother stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRB Barcelona - BIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:IRB Barcelona - BIST

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: AKP (Apc KO, KrasG12D and P53 KO) and APS (Apc KO, P53 and Smad4KO) mouse organoids were treated with 4OH-Tamoxifen for 16 hours before the addition of FOLFIRI. Cells were sorted right after Tamoxifen induction (after chemotherapy), and right after FOLFIRI treatment (sorted by their Tomato expression). 30 days after removal of folfiri, cells were recovered from folfiri treatment, and after a passage were sorted based on their tomato expression. Organoids were culture as described in Tauriello et al. Nature 2018. Organoids were grown for 3 days in normal organoid stem cell media before chemotherapy treatment began APS and AKP organoids were induced for 16h with 4-OH Tamoxifen (1 μM Sigma-Aldrich/Merck, H7904). FOLFIRI was a combination of 5FU (50μg/μl) and SN38 (100nM, MedChem HY-13704). After 3 days of treatment, drugs were removed, followed by addition of fresh fully-supplemented control media. Sample multiplexing was performed following the Cell Multiplexing Oligo Labeling for Single Cell RNA Sequencing Protocol (10x Genomics). Briefly, cells were centrifuged at 500x g at room temperature with a swinging-bucket rotor, resuspended in 100 ul of Cell Multiplexing Oligo (3’ CellPlex Kit, 10x Genomics) and incubated at RT for 5 mins. Cells were washed 3 times with cold 1X PBS (Thermo Fisher Scientific) supplemented with 1% BSA (MACS Miltenyi), all centrifugations being performed at 500x g at 4C. Cells were finally resuspended in an appropriate volume of 1X PBS-0.05% BSA in order to obtain a final cell concentration of approximatively 1000 cells/ul and counted using a TC20™ Automated Cell Counter (Bio-Rad Laboratories, S.A). Samples were mixed with a 50:50 ratio and filtered with a 40 µm strainer to remove eventual clumps and the resulting pools were checked for final cell number and viability before loading onto the Chromium. Cellplex samples were partitioned into 3’ Gel Bead Emulsions with a Target Cell Recovery between 6.000 and 20.000 cells (corresponding to 3.000-5.000 cells per sample within each plex). Libraries were prepared following 10x Genomics Single Cell 3’ mRNA kit protocol with Feature Barcode technology for Cell Multiplexing. Briefly, after GEM-RT clean up, cDNA from poly-adenylated mRNA and barcoded DNA from the CMO Feature Barcode were amplified via PCR according to the Target Recovery cell number. A SPRI selection clean-up was done in order to separate the amplified cDNA molecules for 3' Gene Expression and the CMO-derived cDNA. 100 ng of mRNA-derived cDNA were used for GEX library construction while 5 µl of CMO-derived cDNA were used to amplify the corresponding Cellplex library. Size distribution and library concentration were determined using a Bioanalyzer High Sensitivity chip (Agilent Technologies)

text: adult

characteristic: developmental stage

text: colorectal adenoma

characteristic: disease

text: mixed

characteristic: fraction

text: Apc KO, KrasG12D and P53 KO

characteristic: genetic modification

text: APCMin/+ Mex3a CreErt2/+

characteristic: genotype

text: tumour organoid

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: colorectum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRB Barcelona - BIST

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: colorectal adenoma

text: no tomato expression

text: Apc KO, KrasG12D and P53 KO

text: APCMin/+ Mex3a CreErt2/+

text: tumour organoid

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colorectum

text: neoplasm

text: Mus musculus

text: male

characteristic: title


text: IRB Barcelona - BIST

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: colorectal adenoma

characteristic: disease

text: tamoxifen-induced TdTomato expression

characteristic: fraction

text: Apc KO, KrasG12D and P53 KO

characteristic: genetic modification

text: APCMin/+ Mex3a CreErt2/+

text: tumour organoid

text: Mus musculus

text: Mus musculus

text: colorectum

text: neoplasm

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRB Barcelona - BIST

text: public

text: ArrayExpress

text: house mouse

text: adult

text: colorectal adenoma

text: mixed

text: Apc KO, P53 and Smad4KO

text: APCMin/+ Mex3a CreErt2/+

characteristic: genotype

text: tumour organoid

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: colorectum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


text: IRB Barcelona - BIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: colorectal adenoma

text: no tomato expression

text: Apc KO, P53 and Smad4KO

text: APCMin/+ Mex3a CreErt2/+

text: tumour organoid

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colorectum

text: neoplasm

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRB Barcelona - BIST

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: colorectal adenoma

characteristic: disease

text: tamoxifen-induced TdTomato expression

characteristic: fraction

text: Apc KO, P53 and Smad4KO

characteristic: genetic modification

text: APCMin/+ Mex3a CreErt2/+

text: tumour organoid

text: Mus musculus

text: Mus musculus

text: colorectum

text: neoplasm

text: Mus musculus

text: male


E-MTAB-11742:Sample 1

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11742:Sample 1

text: ArrayExpress

text: house mouse

text: Protocols: cerebellar tissues from control or prion-inoculated mice are dissected and stored in -80 freezer. Total RNA was extracted according to the instruction of TRIzol™ Reagent (Invitrogen, 15596-018). After cleanup with the RNeasy Plus universal mini kit (QIAGEN) and quality-check with Bioanalyzer 2100 (Agilent Technologies), sample mRNA passed the quality control was enriched with the poly-A method. Sequencing libraries were then prepared with the TruSeq RNA Sample Prep kit v2 (Illumina)

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-11742:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: SRA accession

text: E-MTAB-11742:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Sample 2

characteristic: title


E-MTAB-11742:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

text: public

text: E-MTAB-11742:Sample 3

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Sample 3


E-MTAB-11742:Sample 7

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11742:Sample 7

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

text: Sample 7


E-MTAB-11742:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: SRA accession

text: E-MTAB-11742:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 8


E-MTAB-11742:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

text: public

text: E-MTAB-11742:Sample 9

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Sample 9

characteristic: title


E-MTAB-11742:Sample 10

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11742:Sample 10

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: prion disease

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Sample 10


E-MTAB-11742:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11742:Sample 11

text: ArrayExpress

text: house mouse

text: adult

text: prion disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

text: Sample 11


E-MTAB-11742:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

text: public

characteristic: SRA accession

text: E-MTAB-11742:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: prion disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 12


E-MTAB-11742:Sample 4

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11742:Sample 4

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: prion disease

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Sample 4

characteristic: title


E-MTAB-11742:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: E-MTAB-11742:Sample 5

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: prion disease

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

text: Mus musculus

text: male

text: Sample 5


E-MTAB-11742:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11742:Sample 6

text: ArrayExpress

text: house mouse

text: adult

text: prion disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cerebellum

characteristic: organism part

text: Mus musculus

text: male

text: Sample 6


text: UNIVERSITY OF OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF OXFORD

characteristic: Submitter Id

text: Experimentally evolved PAO1+R388:DeltaIntA4 population at x2MIC time-point - ramping treatment

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: Experimentally evolved PAO1+R388:WTA4 population at x2MIC time-point - ramping treatment

characteristic: description

text: Pseudomonas aeruginosa PAO1

characteristic: organism

text: Pseudomonas aeruginosa PAO1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OXFORD

text: public

text: Experimentally evolved PAO1+R388:DeltaIntA4 population at x2MIC time-point - constant concentration treatment. Pooled population of 6 samples

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: Experimentally evolved PAO1+R388:WTA4 population at x2MIC time-point - constant concentration treatment. Pooled population of 6 samples

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: Experimentally evolved PAO1+R388:DeltaIntA4 population at x2MIC time-point - no antibiotic treatment. Pooled population of 6 samples

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: Experimentally evolved PAO1+R388:WTA4 population at x2MIC time-point - no antibiotic treatment. Pooled population of 6 samples

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: PA01+ R388:WTA4 plasmid reference strain

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: PA01 + R388:DeltaIntA4 plasmid reference strain

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF OXFORD

text: public

text: PA01 reference strain

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

text: not collected

text: Germany

text: human

text: not collected

text: homo sapien

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Public Health Authority of the Slovak Republic

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Authority of the Slovak Republic

characteristic: INSDC center name

text: public

text: not provided

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: host age

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

text: public

text: not provided

text: Slovakia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

characteristic: oxygenation status of sample

text: 341F (CCTACGGGNGGCWGCAG) and 805R (GACTACHVGGGTATCTAATCC)

characteristic: pcr primers

text: LMO 2017 (0.2, 3-0.2, 3)

characteristic: project name

text: Filter setup: 0.2

characteristic: sample collection device or method

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: LMO 16S 2017-05-23, filter fraction:0.2

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: aquatic metagenome

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: LMO 16S 2017-06-15, filter fraction:0.2

text: water


text: LNU

text: public

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

characteristic: project name

text: Filter setup: 0.2

characteristic: sample collection device or method

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: LMO 16S 2017-06-20, filter fraction:0.2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target subfragment

text: LMO 16S 2017-07-06, filter fraction:0.2

characteristic: title

text: water

characteristic: water environmental package


text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

characteristic: project name

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: LMO 16S 2017-07-19, filter fraction:0.2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

characteristic: sample collection device or method

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: LMO 16S 2017-08-01, filter fraction:0.2

text: water


text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target subfragment

text: LMO 16S 2017-08-15, filter fraction:0.2

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

characteristic: project name

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: LMO 16S 2017-10-17, filter fraction:0.2

text: water


text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

characteristic: sample collection device or method

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: LMO 16S 2017-10-31, filter fraction:0.2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target subfragment

text: LMO 16S 2017-11-13, filter fraction:0.2

characteristic: title

text: water

characteristic: water environmental package


text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

characteristic: project name

text: Filter setup: 0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: LMO 16S 2017-11-30, filter fraction:0.2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 0.2

characteristic: sample collection device or method

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: LMO 16S 2017-12-12, filter fraction:0.2

text: water


text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 3-0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target subfragment

text: LMO 16S 2017-05-23, filter fraction:3-0.2

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

characteristic: project name

text: Filter setup: 3-0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

text: LMO 16S 2017-06-15, filter fraction:3-0.2

text: water


text: LNU

text: public

characteristic: collection date

text: marine pelagic biome (ENVO:01000023)

characteristic: environment (biome)

text: brackish water body (ENVO:01001321)

characteristic: environment (feature)

text: brackish water (ENVO:00002019)

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 3-0.2

characteristic: sample collection device or method

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: LMO 16S 2017-06-20, filter fraction:3-0.2

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine pelagic biome (ENVO:01000023)

text: brackish water body (ENVO:01001321)

text: brackish water (ENVO:00002019)

text: Baltic Sea

text: mimarks-survey

text: aquatic metagenome

text: aerobic

text: LMO 2016, 2017 (0.2, 3-0.2, 3)

text: Filter setup: 3-0.2

text: aquatic metagenome

text: Sequencing by synthesis (Illumina)

text: 16S rRNA

characteristic: target subfragment

text: LMO 16S 2017-07-06, filter fraction:3-0.2

characteristic: title

text: water

characteristic: water environmental package