characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universidad de Sevilla

text: public

text: soil

text: soil

text: soil

text: Spain

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: environmental samples

characteristic: project name

text: environmental samples

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Oxifluorfen + Biostimulant 2


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:LUDWIG-MAXIMILIANS UNIVERSITY MUNICH, MUNICH, GERMANY

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: gsnor1-3 mutant replicate B5

characteristic: description

characteristic: ecotype

text: gsnor1-3 mutant

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LUDWIG-MAXIMILIANS UNIVERSITY MUNICH, MUNICH, GERMANY

text: public

text: thale cress

text: gsnor1-3 mutant replicate A5

text: gsnor1-3 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: sahh1 mutant replicate A1

text: sahh1 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: Col-0 WT replicate B3

text: wildtype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: sahh1 mutant replicate B1

text: sahh1 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: Col-0 WT replicate A3

text: wildtype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: sahh1 mutant replicate A2

text: sahh1 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: Col-0 WT replicate A4

text: wildtype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: gsnor1-3 mutant replicate A6

text: gsnor1-3 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: sahh1 mutant replicate C1

text: sahh1 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: sahh1 mutant replicate C2

text: sahh1 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: Col-0 WT replicate C3

text: wildtype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: Col-0 WT replicate C4

text: wildtype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: gsnor1-3 mutant replicate C5

text: gsnor1-3 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: thale cress

text: gsnor1-3 mutant replicate C6

text: gsnor1-3 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf


text: public

text: E-MTAB-10289:PE906_SNA1_IP_anti_GFP_beads_1

tag: Namespace:Centre for Genome Enabled Biology and Medicine

text: ArrayExpress

characteristic: broker name

text: Protocols: C. elegans embryo extracts were prepared essentially as described (Lasda, Kuersten, and Blumenthal 2011). Briefly, synchronised populations were prepared by alkaline hypochlorite treatment of gravid adult animals grown on NGM agar plates in the presence of OP50 bacteria, or in liquid culture in S-complete medium supplemented with OP50. Approximately 2x10^5 embryos were transferred into 500 ml S-complete medium (50 mM potassium phosphate buffer (pH 6), 100 mM NaCl, 10 mM potassium citrate (pH 6), 3mM CaCl2, 3mM MgSO4 and 1x standard trace metal solution) supplemented with Nystatin (14 mg/ml) and grown overnight at 20°C in a shaking incubator at 160 rpm to L1 stage. After approximately 24 h, 14-16 g frozen OP50 bacteria were added and the incubation was continued until synchronous gravid adult worms emerged. Adults were recovered by centrifugation at 400x g for 2 min, washed using MilliQ water, floated on 1 M sucrose and then washed again using MilliQ water to remove debris. Animals were then lysed by alkaline hypochlorite treatment and embryos recovered by floating on sucrose. The embryos were washed three times with MilliQ water and twice in homogenisation buffer (10mM Tris-HCl (pH 8.0), 1.5 mM MgCl2, 10 mM KCl, 1 mM DTT, 50 mM sucrose, 0.05% NP-40, 1X cOmplete EDTA-free protease inhibitor (Roche 1873560) and 1mM PMSF) and finally resuspended in 1 volume homogenisation buffer. They were lysed using a Dura-Grind Dounce Tissue Grinder (Wheaton) and the extract was then cleared by centrifugation at 10,000 × g for 10 min at 4°C. The supernatants was dialysed against 20 mM Tris-HCl (pH 8.0), 50 mM KCl, 1 mM DTT, 10% glycerol, 0.5 mM EDTA, 1 mM PMSF. Immunoprecipitations of GFP-tagged proteins were done in triplicates using anti-GFP nanobody coupled agarose beads and control agarose beads (GFP-Trap and control agarose beads, Chromotek GmbH). For immunoprecipitation, extract supplemented with 35 mM KCl, 4 mM MgCl2, 1.5 mM DTT, 3% PEG 8000 was mixed with settled anti-GFP nanobody coupled agarose beads or control agarose beads and incubated at 4°C for 1h. Then the beads were collected by centrifugation and washed extensively with 20 mM Tris-HCl (pH8.0), 100 mM KCl, 0.1 mM EDTA, 0.1% NP-40, 1 mM DTT. After removal of the final wash, the beads were treated with 200 µl 0.2 mg/ml Proteinase K in 200 mM Tris-HCl (pH7.5), 300 mM NaCl, 2% SDS and 25 mM EDTA at 65°C for 15 min. Then RNA was recovered by two subsequent extractions with acid-phenol:chloroform (pH 4.5), and concentrated by ethanol precipitation using linear acrylamide as carrier, washed with 80% ethanol and air dried. Libraries were prepared using the Diagenode CATS small RNA sequencing following the manufacturer’s instructions

text: embryo stage

characteristic: developmental stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genome Enabled Biology and Medicine

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10289:PE906_SNA1_IP_anti_GFP_beads_2

text: ArrayExpress

text: embryo stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10289:PE906_SNA1_IP_anti_GFP_beads_3

characteristic: Submitter Id

text: ArrayExpress

text: embryo stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


text: public

text: E-MTAB-10289:PE906_SNA1_IP_control_beads_1

text: ArrayExpress

characteristic: description

text: embryo stage

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


text: public

text: E-MTAB-10289:PE906_SNA1_IP_control_beads_2

text: ArrayExpress

text: embryo stage

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10289:PE906_SNA1_IP_control_beads_3

text: ArrayExpress

text: embryo stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans


E-MTAB-10289:Total RNA 1

text: public

text: E-MTAB-10289:Total RNA 1

text: ArrayExpress

characteristic: broker name

text: Protocols: C. elegans embryo extracts were prepared essentially as described (Lasda, Kuersten, and Blumenthal 2011). Briefly, synchronised populations were prepared by alkaline hypochlorite treatment of gravid adult animals grown on NGM agar plates in the presence of OP50 bacteria, or in liquid culture in S-complete medium supplemented with OP50. Approximately 2x10^5 embryos were transferred into 500 ml S-complete medium (50 mM potassium phosphate buffer (pH 6), 100 mM NaCl, 10 mM potassium citrate (pH 6), 3mM CaCl2, 3mM MgSO4 and 1x standard trace metal solution) supplemented with Nystatin (14 mg/ml) and grown overnight at 20°C in a shaking incubator at 160 rpm to L1 stage. After approximately 24 h, 14-16 g frozen OP50 bacteria were added and the incubation was continued until synchronous gravid adult worms emerged. Adults were recovered by centrifugation at 400x g for 2 min, washed using MilliQ water, floated on 1 M sucrose and then washed again using MilliQ water to remove debris. Animals were then lysed by alkaline hypochlorite treatment and embryos recovered by floating on sucrose. The embryos were washed three times with MilliQ water and twice in homogenisation buffer (10mM Tris-HCl (pH 8.0), 1.5 mM MgCl2, 10 mM KCl, 1 mM DTT, 50 mM sucrose, 0.05% NP-40, 1X cOmplete EDTA-free protease inhibitor (Roche 1873560) and 1mM PMSF) and finally resuspended in 1 volume homogenisation buffer. They were lysed using a Dura-Grind Dounce Tissue Grinder (Wheaton) and the extract was then cleared by centrifugation at 10,000 × g for 10 min at 4°C. The supernatants was dialysed against 20 mM Tris-HCl (pH 8.0), 50 mM KCl, 1 mM DTT, 10% glycerol, 0.5 mM EDTA, 1 mM PMSF. Total RNA for control samples was isolated using the MagMAX™ mirVana™ Total RNA Isolation Kit (ThermoFisher) following manufacturers instructions. Libraries were prepared using the Diagenode CATS small RNA sequencing following the manufacturer’s instructions

text: embryo stage

characteristic: developmental stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Total RNA 1


E-MTAB-10289:Total RNA 2

text: public

text: E-MTAB-10289:Total RNA 2

text: ArrayExpress

text: embryo stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

characteristic: strain

text: Total RNA 2


E-MTAB-10289:Total RNA 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10289:Total RNA 3

text: ArrayExpress

text: embryo stage

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: Total RNA 3


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Quadram Institute Bioscience

text: COVID-19 Genomics UK Consortium

text: Quadram Institute Bioscience

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Birmingham

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


COG-UK/BIRM-BCNYNK

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNYNK

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNYNK

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Northumbria University / South Tees Hospitals NHS Foundation Trust / North Cumbria Integrated Care NHS Foundation Trust / North Tees and Hartlepool NHS Foundation Trust / Newcastle Hospitals NHS Foundation Trust

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


text: Northumbria University / South Tees Hospitals NHS Foundation Trust / North Cumbria Integrated Care NHS Foundation Trust / North Tees and Hartlepool NHS Foundation Trust / Newcastle Hospitals NHS Foundation Trust

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


COG-UK/BIRM-BCNYYQ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNYYQ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNYYQ

text: not provided


COG-UK/BIRM-BCNYJH

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNYJH

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNYJH

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNEH

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNEH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCNNEH

characteristic: title

text: not provided


COG-UK/BIRM-BCNNTJ

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNTJ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNNTJ

text: not provided


COG-UK/BIRM-BCNYTM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNYTM

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNYTM

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNIB

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNIB

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCNNIB

characteristic: title

text: not provided


COG-UK/BIRM-BCNYID

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNYID

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNYID

text: not provided


COG-UK/BIRM-BCNYMA

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNYMA

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNYMA

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNCW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNCW

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCNNCW

characteristic: title

text: not provided


COG-UK/BIRM-BCNYWF

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNYWF

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNYWF

text: not provided


COG-UK/BIRM-BCNNDG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNDG

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNNDG

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCBUHR

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCBUHR

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCBUHR

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: Quadram Institute Bioscience

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: not provided


text: University of Birmingham

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNQO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNQO

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCNNQO

characteristic: title

text: not provided


COG-UK/BIRM-BCNNKA

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNKA

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNNKA

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


COG-UK/BIRM-BCNNXQ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNXQ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNNXQ

text: not provided


COG-UK/BIRM-BCNNGY

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNGY

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNNGY

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNRR

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNRR

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCNNRR

characteristic: title

text: not provided


COG-UK/BIRM-BCNYSB

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNYSB

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: COG-UK/BIRM-BCNYSB

text: not provided


COG-UK/BIRM-BCNYRG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNYRG

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNYRG

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNFN

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNFN

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: COG-UK/BIRM-BCNNFN

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

text: not provided

text: not provided


COG-UK/BIRM-BCNNWD

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNWD

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCNNWD

text: not provided

characteristic: virus identifier


text: human whipworm

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human whipworm

characteristic: common name

text: Trichuris trichiura

characteristic: organism

text: Trichuris trichiura

characteristic: title


text: <html>Trichuris colobae </html>

text: SC

text: public

text: <html>Trichuris colobae </html>

text: Trichuris colobae

text: Trichuris colobae


COG-UK/PHWC-PYYUSG

text: public

text: COG-UK/PHWC-PYYUSG

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

text: COG-UK/PHWC-PYYUSG

text: not provided


COG-UK/BIRM-BCBWNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCBWNA

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCBWNA

text: not provided

characteristic: virus identifier


text: University of Birmingham

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

characteristic: title

text: not provided


COG-UK/BIRM-BCNNUF

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNNUF

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

text: COG-UK/BIRM-BCNNUF

text: not provided


text: Quadram Institute Bioscience

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: Quadram Institute Bioscience

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNYDE

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNYDE

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/BIRM-BCNYDE

characteristic: title

text: not provided


text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

text: not provided


COG-UK/BIRM-BCBUZQ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCBUZQ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/BIRM-BCBUZQ

text: not provided

characteristic: virus identifier


COG-UK/BIRM-BCNNOM

text: University of Birmingham

text: public

text: COG-UK/BIRM-BCNNOM

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: University of Birmingham

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: not provided

text: COG-UK/BIRM-BCNNOM

characteristic: title

text: not provided


COG-UK/BIRM-BCNDRD

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/BIRM-BCNDRD

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: University of Birmingham

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

text: COG-UK/BIRM-BCNDRD

text: not provided


text: Staphylococcus aureus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Staphylococcus aureus

characteristic: common name

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


text: Staphylococcus pseudintermedius

text: SC

text: public

text: Staphylococcus pseudintermedius

text: Staphylococcus pseudintermedius

text: Staphylococcus pseudintermedius

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF FLORENCE

text: public

tag: Namespace:UNIVERSITY OF FLORENCE

characteristic: collection date

text: Olive/Citrus

characteristic: environment (biome)

text: Mediterranean area

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 38˚58’ N/38˚13’ N

unit: DD

characteristic: geographic location (latitude)

text: 16˚14’ E/16˚18’ E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Escherichia coli

characteristic: project name

text: Escherichia coli

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Metagenome

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Metagenome

characteristic: common name

text: metagenome

text: Water

text: metagenome


text: Metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Metagenome

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: Noble Research Institute, LLC

text: public

tag: Namespace:Noble Research Institute, LLC

text: leaf blades from 3 plants

unit: L

characteristic: amount or size of sample collected

text: healthy

characteristic: biotic regimen

characteristic: collection date

text: bread wheat

text: The second leaf blade above the inoculated leaf of wheat seedlings harvested at 21 days post inoculation with mock (sap of Nicotiana benthamiana leaves without virus infection)

characteristic: description

text: 17 Gb

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

text: 34.1859 N

characteristic: geographic location (latitude)

text: 97.0864 W

characteristic: geographic location (longitude)

text: 16 h light at 22 degree celsius and 8 h dark at 19 degree celsius with 60% relative humidity

characteristic: isolation and growth condition

text: 16 h light

characteristic: light regimen

text: Triticum aestivum

text: Bread wheat

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

text: A mix of vermiculite and perlite in a ratio of 4 to 1

characteristic: plant growth medium

text: Leaf blade

characteristic: plant structure

text: six

characteristic: ploidy

text: Healthy

characteristic: sample disease status

text: Triticum aestivum

text: Cultivar Overley

characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Noble Research Institute, LLC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: leaf blades from 3 plants

characteristic: amount or size of sample collected

text: bread wheat

characteristic: common name

text: 17 Gb

text: USA

text: 34.1859 N

text: 97.0864 W

text: 16 h light

text: Triticum aestivum

characteristic: organism

text: Bread wheat

text: Seedling

text: Leaf blade

text: six

text: Healthy

text: Triticum aestivum

text: Cultivar Overley

characteristic: title


text: Noble Research Institute, LLC

text: public

text: leaf blades from 3 plants

characteristic: collection date

text: bread wheat

text: The second leaf blades above the inoculated leaves of wheat seedlings harvested at 21 days post inoculation with mock (sap of Nicotiana benthamiana leaves without virus infection)

characteristic: description

text: 17 Gb

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

text: 34.1859 N

characteristic: geographic location (latitude)

text: 97.0864 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: 16 h light

characteristic: light regimen

text: Triticum aestivum

text: Bread wheat

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

characteristic: plant growth medium

text: Leaf blade

characteristic: plant structure

text: six

characteristic: ploidy

text: Healthy

text: Triticum aestivum

text: Cultivar Overley


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Noble Research Institute, LLC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: leaf blades from 3 plants

characteristic: amount or size of sample collected

text: bread wheat

text: The second systemically-infected leaf blades of wheat seedlings harvested at 21 days post inoculation with a BMV VIGS vector containing a 100 bp eGFP insert

text: 17 Gb

text: USA

text: 34.1859 N

text: 97.0864 W

text: 16 h light

text: Triticum aestivum

text: Bread wheat

text: Seedling

text: Leaf blade

text: six

text: BMV infected

characteristic: sample disease status

text: Triticum aestivum

text: Cultivar Overley

characteristic: subspecific genetic lineage rank


text: Noble Research Institute, LLC

text: public

text: leaf blades from 3 plants

characteristic: collection date

text: bread wheat

characteristic: common name

text: The second systemically-infected leaf blades of wheat seedlings harvested at 21 days post inoculation with a BSMV VIGS vector containing a 235 bp mGFP insert

characteristic: description

text: 17 Gb

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

text: 34.1859 N

characteristic: geographic location (latitude)

text: 97.0864 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: 16 h light

characteristic: light regimen

text: Triticum aestivum

characteristic: organism

text: Bread wheat

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

text: Leaf blade

text: six

text: BSMV infected

text: Triticum aestivum

text: Cultivar Overley

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Noble Research Institute, LLC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: roots from 3 plants

text: bread wheat

text: Roots of wheat seedlings harvested at 21 days post inoculation with mock (sap of Nicotiana benthamiana leaves without virus infection)

text: 17 Gb

text: USA

text: 34.1859 N

text: 97.0864 W

text: 16 h light

text: Triticum aestivum

text: Bread wheat

text: Seedling

characteristic: plant growth medium

text: Root

characteristic: plant structure

text: six

characteristic: ploidy

text: Healthy

text: Triticum aestivum

text: Cultivar Overley


text: Noble Research Institute, LLC

text: public

text: roots from 3 plants

characteristic: amount or size of sample collected

characteristic: collection date

text: bread wheat

characteristic: common name

text: Roots of wheat seedlings harvested at 21 days post inoculation with a BMV VIGS vector containing a 100 bp eGFP insert

characteristic: description

text: 17 Gb

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

text: 34.1859 N

characteristic: geographic location (latitude)

text: 97.0864 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: 16 h light

characteristic: light regimen

text: Triticum aestivum

characteristic: organism

text: Bread wheat

text: Seedling

text: Root

text: six

text: BMV infected

characteristic: sample disease status

text: Triticum aestivum

text: Cultivar Overley

characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Noble Research Institute, LLC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: roots from 3 plants

text: bread wheat

text: Roots of wheat seedlings harvested at 21 days post inoculation with a BSMV VIGS vector containing a 235 bp mGFP insert

text: 17 Gb

text: USA

text: 34.1859 N

text: 97.0864 W

text: 16 h light

text: Triticum aestivum

text: Bread wheat

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

text: Root

text: six

text: BSMV infected

text: Triticum aestivum

text: Cultivar Overley

characteristic: title


text: Salmonella enterica

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Salmonella enterica

characteristic: common name

text: Salmonella enterica

text: Salmonella enterica


text: Escherichia Coli

text: SC

text: public

text: Escherichia Coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli


text: Liver

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


text: homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


E-MTAB-10373:Sample 1

text: Department of New Biology, DGIST

text: public

text: E-MTAB-10373:Sample 1

tag: Namespace:Department of New Biology, DGIST

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chief cell of stomach

text: house mouse

text: Protocols: Stomachs were prepared by carefully separating the corpus from the forestomach and pylorus. Corpus tissue was divided into 4 pieces of similar size and incubated in 4 ml dissociation solution (45 U/ml Dispase II, Thermo Fisher Scientific; 0.6 mg/ml pancreatin, Sigma; 1x penicillin/streptomycin in DMEM high glucose, HEPES, no phenol red, Thermo Fisher Scientific) at 37 °C with shaking at 270 rpm. After dissociation, the solution becomes cloudy and corpus fragments appear more transparent. All subsequent steps were then performed on ice. To avoid cell loss due to cell adhesion to pipette or tube walls, all pipettes and tubes used for pipetting the cell suspension were pre-incubated with either DMEM or PBS containing FBS. To further disrupt the tissue, the cell suspension, including corpus pieces, was pipetted up and down several times using a 10 ml pipette. The cell suspension without remaining corpus pieces was then transferred to a 15 ml Falcon tube. The corpus pieces and the dissociation tube were then washed twice with 5 ml DMEM + 10% FBS and the wash solution combined with the cell suspension for inactivation of the dissociation reaction. Cells were centrifuged at 300 g for 5 min and resuspended in 1% FBS in PBS. The cell suspension was filtered through a 100 μm cell strainer into a pre-coated 15 ml tube. The tube and filters were washed twice with 1 ml of 1% FBS in PBS and the cell suspension was then centrifuged a second time at 300 g for 5 min. For Troy+ chief cell sorting, supernatant was removed and the cell pellet was resuspended in 100 μl antibody mix (1% FBS, 10 U / ml DNAse; Promega, 1 to 20 ATPase, H+ / K+ Exchanging, beta polypeptide (ATP4b) Alexa Fluor 555 rabbit antibody; Bioss) for 1 h incubation on ice. Cells were washed with 3 ml PBS + 1% FBS and filtered once more if clumps could be observed. After 5 min centrifugation at 300 g, the cell pellet was resuspended in 1 ml PBS, 1% FBS, 10 U / ml DNAse and transferred to MOFLO tube for sorting. Cells were sorted directly into 300ul lysis buffer (Arcturus Pico Pure RNA Isolation Kit). Cell lysate was snap-frozen on dry ice and subsequently stored at -80 ºC. RNA purification was performed using the Arcturus Pico Pure RNA Isolation Kit (Life Technologies) following the manufacturer’s instructions. For single-end mRNA-sequencing, 17 total RNA samples were extracted from Troy+-eGFP gastric corpus cells in homeostatic and injury conditions. The integrity of total RNA was confirmed using an Agilent BioAnalyzer. The ranges of RNA integrity number (RIN) were 6.6~9.3. cDNA libraries were generated from total RNA according to QuantSeq 3’ mRNA-Seq FWD library preparation protocols. The library templates were amplified in 14 -18 PCR cycles, and concurrently barcoded. Purification was performed with 27 μl PB, and the resulting end-point PCR products were analysed on a bioanalyser using a DNA HS chip. 6 - 10 fmol of each library (calculated from the 150 - 1500 nt region) were pooled to yield an equimolar lane mix. Each lane contained libraries from 12 or 13 samples. The lane-mixes were separately subject to single end 100 nt sequencing using an Illumina HiSeq 2500 system.

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Troy positive

characteristic: immunophenotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-10373:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10373:Sample 10

text: ArrayExpress

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: gastric parietal cell atrophy

characteristic: injury

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 10


E-MTAB-10373:Sample 11

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10373:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chief cell of stomach

text: house mouse

characteristic: common name

text: adult

text: Troy positive

text: gastric parietal cell atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 11

characteristic: title


E-MTAB-10373:Sample 12

text: Department of New Biology, DGIST

text: public

text: E-MTAB-10373:Sample 12

text: ArrayExpress

text: chief cell of stomach

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Troy positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

text: Mus musculus

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 12


E-MTAB-10373:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10373:Sample 13

text: ArrayExpress

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: gastric parietal cell atrophy

characteristic: injury

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 13


E-MTAB-10373:Sample 14

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10373:Sample 14

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chief cell of stomach

text: house mouse

characteristic: common name

text: adult

text: Troy positive

text: gastric parietal cell atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 14

characteristic: title


E-MTAB-10373:Sample 15

text: Department of New Biology, DGIST

text: public

text: E-MTAB-10373:Sample 15

text: ArrayExpress

text: chief cell of stomach

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Troy positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

text: Mus musculus

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 15


E-MTAB-10373:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10373:Sample 16

text: ArrayExpress

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: gastric parietal cell atrophy

characteristic: injury

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 16


E-MTAB-10373:Sample 17

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10373:Sample 17

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chief cell of stomach

text: house mouse

characteristic: common name

text: adult

text: Troy positive

text: gastric parietal cell atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 17

characteristic: title


E-MTAB-10373:Sample 2

text: Department of New Biology, DGIST

text: public

text: E-MTAB-10373:Sample 2

text: ArrayExpress

text: chief cell of stomach

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Troy positive

characteristic: immunophenotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 2


E-MTAB-10373:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10373:Sample 3

text: ArrayExpress

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 3


E-MTAB-10373:Sample 4

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10373:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chief cell of stomach

text: house mouse

characteristic: common name

text: adult

text: Troy positive

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 4


E-MTAB-10373:Sample 5

text: Department of New Biology, DGIST

text: public

text: E-MTAB-10373:Sample 5

text: ArrayExpress

text: chief cell of stomach

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Troy positive

characteristic: immunophenotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: female

text: Sample 5

characteristic: title


E-MTAB-10373:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

text: public

text: E-MTAB-10373:Sample 6

text: ArrayExpress

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 6


E-MTAB-10373:Sample 7

text: Department of New Biology, DGIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10373:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: gastric parietal cell atrophy

characteristic: injury

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

text: Sample 7


E-MTAB-10373:Sample 8

text: Department of New Biology, DGIST

text: public

text: E-MTAB-10373:Sample 8

text: ArrayExpress

text: chief cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Troy positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: female

text: Sample 8


E-MTAB-10373:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

text: public

text: E-MTAB-10373:Sample 9

text: ArrayExpress

text: chief cell of stomach

text: house mouse

text: adult

text: Troy positive

text: gastric parietal cell atrophy

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 9

characteristic: title


text: Escherichia coli

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia coli

text: Acidiphilium rubrum

text: Acidiphilium rubrum


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Escherichia coli

characteristic: common name

text: Acidiphilium rubrum

text: Acidiphilium rubrum


text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: Submitter Id

text: Sphingomonas

characteristic: common name

text: cultured isolate from surface-sterilized leaf

characteristic: description

text: A.thaliana

text: bacterium

text: bacterium

characteristic: title


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: Sphingomonas

text: A.thaliana

text: bacterium

characteristic: organism

text: bacterium


text: public

text: Sphingomonas

text: A.thaliana

text: uncultured bacterium

text: uncultured bacterium


text: public

text: Sphingomonas

text: C.hirsuta

text: bacterium

text: bacterium


text: public

text: Sphingomonas

text: T.officinale

text: bacterium

text: bacterium


text: public

text: Sphingomonas

text: I.glandulifera

text: bacterium

text: bacterium


text: public

text: Sphingomonas

text: T.repens

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: cultured isolate from surface-sterilized leaf ; Pv-ATUE5

text: C.hirsuta

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: T.repens

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: T.repens

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: T.officinale

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: A.thaliana

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: T.officinale

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: A.thaliana

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: I.glandulifera

text: bacterium

text: bacterium


text: public

text: Pseudomonas

text: C.hirsuta

text: bacterium

text: bacterium


text: public

tag: Namespace:Universidad de Las Palmas de Gran Canaria

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: marine aphotic zone

characteristic: environment (feature)

text: saline water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: seawater metagenome

text: MAFIA

characteristic: project name

unit: practical salinity unit

characteristic: salinity

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

unit: ºC

characteristic: temperature

text: MAFIA cruise, sample E11150016S

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad de Las Palmas de Gran Canaria

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: marine aphotic zone

text: saline water

text: Atlantic Ocean

text: mimarks-survey

text: seawater metagenome

characteristic: organism

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

text: MAFIA cruise, sample E11250016S

characteristic: title

text: water


text: public

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: marine aphotic zone

characteristic: environment (feature)

text: saline water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: seawater metagenome

text: MAFIA

characteristic: project name

characteristic: salinity

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: MAFIA cruise, sample E1130016S

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: marine aphotic zone

text: saline water

text: Atlantic Ocean

text: mimarks-survey

text: seawater metagenome

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: MAFIA cruise, sample E1150016S

text: water

characteristic: water environmental package


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: marine aphotic zone

characteristic: environment (feature)

text: saline water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: seawater metagenome

characteristic: organism

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

text: MAFIA cruise, sample E1250016S

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: marine aphotic zone

text: saline water

text: Atlantic Ocean

text: mimarks-survey

characteristic: investigation type

text: seawater metagenome

text: MAFIA

characteristic: project name

characteristic: salinity

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: MAFIA cruise, sample E130016S

text: water


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: marine aphotic zone

characteristic: environment (feature)

text: saline water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: seawater metagenome

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: MAFIA cruise, sample E1350016S

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: marine aphotic zone

text: saline water

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: seawater metagenome

characteristic: organism

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

text: MAFIA cruise, sample E170016S

characteristic: title

text: water


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: marine aphotic zone

characteristic: environment (feature)

text: saline water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: investigation type

text: seawater metagenome

text: MAFIA

characteristic: project name

characteristic: salinity

text: seawater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: MAFIA cruise, sample E2150016S

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: marine biome

text: marine aphotic zone

text: saline water

text: Atlantic Ocean

text: mimarks-survey

text: seawater metagenome

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature

text: MAFIA cruise, sample E2250016S

text: water

characteristic: water environmental package


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: marine aphotic zone

characteristic: environment (feature)

text: saline water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: seawater metagenome

characteristic: organism

text: MAFIA

text: seawater metagenome

text: Illumina MiSeq

text: MAFIA cruise, sample E230016S

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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