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text: public

text: GV team (IFREMER)

text: Vibrio chagasii 54_P_496

text: France

text: Brest

characteristic: geographic location (region and locality)

text: Seawater

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 54_P_496


characteristic: ENA-LAST-UPDATE

text: IFREMER

characteristic: INSDC last update

text: public

text: GV team (IFREMER)

text: Vibrio chagasii 54_P_499

text: France

text: Brest

text: Seawater

text: Vibrio chagasii

characteristic: organism

text: Vibrio chagasii

text: Vibrio chagasii 54_P_499


text: IFREMER

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: GV team (IFREMER)

text: Vibrio chagasii 54_P_500

text: France

text: Brest

text: Seawater

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 54_P_500

characteristic: title


characteristic: External Id

text: IFREMER

characteristic: INSDC center name

text: public

text: GV team (IFREMER)

text: Vibrio chagasii 54_P_501

text: France

text: Brest

text: Seawater

characteristic: isolation source

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 54_P_501


text: IFREMER

text: public

text: GV team (IFREMER)

characteristic: collected by

characteristic: collection date

text: Vibrio chagasii 55_O_506

text: France

text: Brest

text: Oyster

text: Vibrio chagasii

text: Vibrio chagasii

characteristic: strain

text: Vibrio chagasii 55_O_506


text: IFREMER

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: GV team (IFREMER)

text: Vibrio chagasii 55_O_507

characteristic: description

text: France

text: Brest

text: Oyster

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 55_O_507


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio chagasii 55_O_508

text: France

characteristic: geographic location (country and/or sea)

text: Brest

text: Oyster

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 55_O_508


characteristic: ENA-LAST-UPDATE

text: IFREMER

characteristic: INSDC last update

text: public

text: GV team (IFREMER)

text: Vibrio chagasii 55_P_509

text: France

text: Brest

characteristic: geographic location (region and locality)

text: Seawater

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 55_P_509


text: IFREMER

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: GV team (IFREMER)

text: Vibrio chagasii 56_P_515

text: France

text: Brest

text: Seawater

text: Vibrio chagasii

characteristic: organism

text: Vibrio chagasii

text: Vibrio chagasii 56_P_515


characteristic: External Id

text: IFREMER

characteristic: INSDC center name

text: public

text: GV team (IFREMER)

text: Vibrio chagasii 56_P_521

text: France

text: Brest

text: Seawater

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 56_P_521

characteristic: title


text: IFREMER

text: public

text: GV team (IFREMER)

characteristic: collected by

characteristic: collection date

text: Vibrio chagasii 57_P_511

text: France

text: Brest

text: Seawater

characteristic: isolation source

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 57_P_511


text: IFREMER

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: GV team (IFREMER)

text: Vibrio chagasii 57_P_526

text: France

text: Brest

text: Seawater

text: Vibrio chagasii

text: Vibrio chagasii

characteristic: strain

text: Vibrio chagasii 57_P_526


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio chagasii 57_P_527

characteristic: description

text: France

text: Brest

text: Seawater

text: Vibrio chagasii

text: Vibrio chagasii

text: Vibrio chagasii 57_P_527


text: Anopheles gambiae

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles arabiensis

text: SC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Anopheles arabiensis

text: Anopheles arabiensis

characteristic: organism

text: Anopheles arabiensis


text: Plasmodium falciparum

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: title


text: Plasmodium vivax

text: SC

text: public

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax


text: Anopheles gambiae

text: SC

text: public

text: Anopheles gambiae

text: Anopheles arabiensis

text: Anopheles arabiensis


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax


text: Plasmodium vivax

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Yeast

characteristic: ArrayExpress-Phenotype

text: Saccromyces cerevisiae

text: SC

characteristic: INSDC first public

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c


text: Yeast

text: Saccharomyces cerevisiae

text: SC

text: public

characteristic: SRA accession

text: Saccharomyces cerevisiae S288c

characteristic: sample description

text: Saccharomyces cerevisiae S288c


text: Yeast

text: Saccharomyces cerevisiae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccromyces cerevisiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: Saccharomyces cerevisiae S288c

text: Saccharomyces cerevisiae S288c


text: Yeast

text: Saccharomyces cerevisiae

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Plasmodium falciparum

text: SC

characteristic: INSDC last update

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: P. falciparum


text: Serratia ficaria

text: SC

text: public

text: Serratia ficaria

characteristic: common name

text: Serratia ficaria

text: Serratia ficaria

text: Serratia ficaria


text: Serratia plymuthica

text: SC

text: public

characteristic: INSDC status

text: Serratia plymuthica

text: Serratia plymuthica

text: Serratia plymuthica

text: Serratia plymuthica


text: Serratia marcescens

text: SC

text: public

characteristic: Submitter Id

text: Serratia marcescens

text: Serratia marcescens

text: Serratia marcescens

text: Serratia marcescens


text: Serratia proteamaculans subsp. quinovorans

text: SC

text: public

text: Serratia quinivorans

characteristic: organism

text: Serratia quinivorans


text: Serratia entomophila

characteristic: External Id

text: SC

text: public

text: Serratia entomophila

text: Serratia entomophila

text: Serratia entomophila

text: Serratia entomophila


text: Serratia fonticola

text: SC

characteristic: INSDC center name

text: public

text: Serratia fonticola

text: Serratia fonticola

text: Serratia fonticola

text: Serratia fonticola


text: Serratia liquefaciens

text: SC

text: public

text: Serratia liquefaciens

text: Serratia liquefaciens

text: Serratia liquefaciens

text: Serratia liquefaciens

characteristic: title


text: Serratia proteamaculans

text: SC

text: public

text: Serratia proteamaculans

text: Serratia proteamaculans

text: Serratia proteamaculans

text: Serratia proteamaculans


text: Serratia grimesii

text: SC

text: public

text: Serratia grimesii

text: Serratia grimesii

text: Serratia grimesii

text: Serratia grimesii


text: Serratia rubidaea

text: SC

text: public

text: Serratia rubidaea

text: Serratia rubidaea

text: Serratia rubidaea

text: Serratia rubidaea


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium vivax

text: SC

text: public

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax


text: JIC

text: public

text: Albugo candida race Ac2v infected Brassica juncea plants grown in 12 hour light and dark conditions at 22 C.

characteristic: description

text: Albugo candida 2VRR

text: Albugo candida 2VRR


text: BCAS

text: public

text: The RNA sample was prepared by mixing RNA isolated from shoots and flowers.

text: Cuscuta epithymum

text: Cuscuta epithymum

text: RNA isolated from Cuscuta epithymum


SHERM

text: UNIVERSITY OF SHEFFIELD

text: public

text: SHERM

tag: Namespace:UNIVERSITY OF SHEFFIELD

text: 28 oC day / 25 oC night

characteristic: air temperature regimen

characteristic: collection date

text: Sand/Soil/Vermiculite mix

characteristic: culture rooting medium

text: Striga hermonthica individual from a seed accession collected in Kibos Kenya.

text: 1,475 Mb

characteristic: estimated size

text: Kenya

characteristic: geographic location (country and/or sea)

text: 0° 5' 30.1272'' S

unit: DD

characteristic: geographic location (latitude)

text: 34° 46' 4.6416'' E

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: A S. hermonthica individual was harvested from a susceptible rice variety NERICA 7 grown in controlled environment (growth chamber)

characteristic: isolation and growth condition

text: 500 micromol quanta m-2 s-1

characteristic: light regimen

characteristic: number of replicons

text: Striga hermonthica

text: Witchweed

characteristic: organism common name

text: mature leaves

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Diploid

characteristic: ploidy

text: Pot

characteristic: rooting conditions

text: healthy

characteristic: sample health state

text: Striga hermonthica

text: Striga hermonthica individual

text: Watered once every 3 days

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SHEFFIELD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 28 °C day / 25 °C night

characteristic: air temperature regimen

characteristic: collection date

text: One hundred Striga hermonthica individuals growing on the susceptible rice variety NERICA7 were harvested. 25 mg of seedling tissue from each individual was immediately frozen in liquid nitrogen. Tissue from 4 individuals were pooled and DNA extracted (total of 25 samples). The quality of DNA was checked by gel electrophoresis and quantified by Nanodrop. An equal quantity of DNA from each of the 25 samples was then combined (pooled) to form one biological replicate named SHERM_Control_pool_1.

characteristic: description

text: 1,475 Mb

text: Kenya

text: 0° 5' 30.1272'' S

text: 34° 46' 4.6416'' E

text: growth chamber

text: 100 S. hermonthica individuals were harvested from a susceptible rice variety NERICA 7 grown in controlled environment (growth chamber)

text: 500 micromol quanta m-2 s-1

text: Long Ashton nutrient solution

characteristic: mineral nutrient regimen

text: Striga hermonthica

characteristic: organism

text: Witchweed

text: Seedling

text: The Rice host was growing in vermiculite. Striga is parasitic on rice roots.

text: whole plant

characteristic: rooting medium pH

text: healthy

text: Striga hermonthica

text: Striga hermonthica control pool 1

characteristic: title

text: 60ml Long Ashton nutrient solution per day


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SHEFFIELD

text: public

text: 28 °C day / 25 °C night

text: One hundred Striga hermonthica individuals growing on the susceptible rice variety NERICA7 were harvested. 25 mg of seedling tissue from each individual was immediately frozen in liquid nitrogen. Tissue from 4 individuals were pooled and DNA extracted (total of 25 samples). The quality of DNA was checked by gel electrophoresis and quantified by Nanodrop. An equal quantity of DNA from each of the 25 samples was then combined (pooled) to form one biological replicate named SHERM_Control_pool_2.

text: 1,475 Mb

characteristic: estimated size

text: Kenya

characteristic: geographic location (country and/or sea)

text: 0° 5' 30.1272'' S

characteristic: geographic location (latitude)

text: 34° 46' 4.6416'' E

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 500 micromol quanta m-2 s-1

characteristic: light regimen

text: Long Ashton nutrient solution

characteristic: number of replicons

text: Striga hermonthica

text: Witchweed

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

characteristic: plant growth medium

text: whole plant

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Striga hermonthica

text: Striga hermonthica control pool 2

characteristic: watering regimen


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SHEFFIELD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 28 °C day / 25 °C night

characteristic: air temperature regimen

characteristic: collection date

text: One hundred Striga hermonthica individuals growing on the susceptible rice variety NERICA7 were harvested. 25 mg of seedling tissue from each individual was immediately frozen in liquid nitrogen. Tissue from 4 individuals were pooled and DNA extracted (total of 25 samples). The quality of DNA was checked by gel electrophoresis and quantified by Nanodrop. An equal quantity of DNA from each of the 25 samples was then combined (pooled) to form one biological replicate named SHERM_Control_pool_3.

characteristic: description

text: 1,475 Mb

text: Kenya

text: 0° 5' 30.1272'' S

text: 34° 46' 4.6416'' E

text: growth chamber

text: 500 micromol quanta m-2 s-1

text: Long Ashton nutrient solution

characteristic: mineral nutrient regimen

text: Striga hermonthica

characteristic: organism

text: Witchweed

text: Seedling

text: whole plant

characteristic: rooting medium pH

text: healthy

text: Striga hermonthica

text: Striga hermonthica control pool 3

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SHEFFIELD

text: public

text: 28 °C day / 25 °C night

text: One hundred Striga hermonthica individuals growing on the resistant rice variety NERICA17 were harvested. 25 mg of seedling tissue from each individual was immediately frozen in liquid nitrogen. Tissue from 4 individuals were pooled and DNA extracted (total of 25 samples). The quality of DNA was checked by gel electrophoresis and quantified by Nanodrop. An equal quantity of DNA from each of the 25 samples was then combined (pooled) to form one biological replicate named SHERM_virulent_pool_1.

text: 1,475 Mb

characteristic: estimated size

text: Kenya

characteristic: geographic location (country and/or sea)

text: 0° 5' 30.1272'' S

characteristic: geographic location (latitude)

text: 34° 46' 4.6416'' E

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: 100 S. hermonthica individuals were harvested from a virulent rice variety NERICA 17 grown in controlled environment (growth chamber)

characteristic: isolation and growth condition

text: 500 micromol quanta m-2 s-1

characteristic: light regimen

text: Long Ashton nutrient solution

characteristic: number of replicons

text: Striga hermonthica

text: Witchweed

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

characteristic: plant growth medium

text: whole plant

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Striga hermonthica

text: Striga hermonthica virulent pool 1

characteristic: watering regimen


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SHEFFIELD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 28 °C day / 25 °C night

characteristic: air temperature regimen

characteristic: collection date

text: One hundred Striga hermonthica individuals growing on the resistant rice variety NERICA17 were harvested. 25 mg of seedling tissue from each individual was immediately frozen in liquid nitrogen. Tissue from 4 individuals were pooled and DNA extracted (total of 25 samples). The quality of DNA was checked by gel electrophoresis and quantified by Nanodrop. An equal quantity of DNA from each of the 25 samples was then combined (pooled) to form one biological replicate named SHERM_virulent_pool_2.

characteristic: description

text: 1,475 Mb

text: Kenya

text: 0° 5' 30.1272'' S

text: 34° 46' 4.6416'' E

text: growth chamber

text: 500 micromol quanta m-2 s-1

text: Long Ashton nutrient solution

characteristic: mineral nutrient regimen

text: Striga hermonthica

characteristic: organism

text: Witchweed

text: Seedling

text: whole plant

characteristic: rooting medium pH

text: healthy

text: Striga hermonthica

text: Striga hermonthica virulent pool 2

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SHEFFIELD

text: public

text: 28 °C day / 25 °C night

text: One hundred Striga hermonthica individuals growing on the resistant rice variety NERICA17 were harvested. 25 mg of seedling tissue from each individual was immediately frozen in liquid nitrogen. Tissue from 4 individuals were pooled and DNA extracted (total of 25 samples). The quality of DNA was checked by gel electrophoresis and quantified by Nanodrop. An equal quantity of DNA from each of the 25 samples was then combined (pooled) to form one biological replicate named SHERM_virulent_pool_3.

text: 1,475 Mb

characteristic: estimated size

text: Kenya

characteristic: geographic location (country and/or sea)

text: 0° 5' 30.1272'' S

characteristic: geographic location (latitude)

text: 34° 46' 4.6416'' E

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

text: 500 micromol quanta m-2 s-1

characteristic: light regimen

text: Long Ashton nutrient solution

characteristic: number of replicons

text: Striga hermonthica

text: Witchweed

characteristic: organism common name

text: Seedling

characteristic: plant developmental stage

characteristic: plant growth medium

text: whole plant

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Striga hermonthica

text: Striga hermonthica virulent pool 3

characteristic: watering regimen


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CENTER FOR BIOTECHNOLOGY, BIELEFELD UNIVERSITY

characteristic: Submitter Id

text: rape

characteristic: common name

text: pool of plants with high glucosinolate content

characteristic: description

text: Brassica napus

characteristic: organism

text: Brassica napus

characteristic: title


characteristic: ENA-CHECKLIST

text: CENTER FOR BIOTECHNOLOGY, BIELEFELD UNIVERSITY

text: public

text: rape

text: pool of plants with low glucosinolate content

text: Brassica napus

text: Brassica napus


text: public

text: rape

text: pool of plants with high seed protein content, grown in area 1

text: Brassica napus

text: Brassica napus


text: public

text: rape

text: pool of plants with low seed protein content, grown in area 1

text: Brassica napus

text: Brassica napus


text: public

text: rape

text: pool of plants with high seed protein content, grown in area 2

text: Brassica napus

text: Brassica napus


text: public

text: rape

text: pool of plants with low seed protein content, grown in area 2

text: Brassica napus

text: Brassica napus


Janetzkis Schlesischer

text: public

text: Janetzkis Schlesischer

text: rape

text: Janetzkis Schlesischer

text: Brassica napus

text: Brassica napus

text: Janetzkis Schlesischer


Lorenz

text: public

text: Lorenz

text: rape

text: Lorenz

text: Brassica napus

text: Brassica napus

text: Lorenz


characteristic: Age

text: FALSE

characteristic: Antibiotic Intake

text: FALSE

characteristic: Cage

characteristic: Farm

text: FALSE

characteristic: Go Outdoors

text: GSC

text: public

text: br-expe

characteristic: Production Category

text: broiler

characteristic: Production Type

characteristic: Tag

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: sex


text: FALSE

text: FALSE

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FALSE

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: la-expe

text: layer

text: chicken gut metagenome

text: chicken gut metagenome


text: TRUE

text: FALSE

characteristic: ENA-CHECKLIST

text: FALSE

text: GSC

text: public

text: br-heavy

text: broiler

characteristic: SRA accession

characteristic: Submitter Id

text: chicken gut metagenome

characteristic: organism

text: chicken gut metagenome


characteristic: Age

text: TRUE

characteristic: Antibiotic Intake

text: TRUE

characteristic: Cage

characteristic: Farm

text: FALSE

text: GSC

text: public

text: la-sel

text: layer

text: chicken gut metagenome

text: chicken gut metagenome


text: TRUE

text: FALSE

text: FALSE

characteristic: Go Outdoors

text: GSC

text: public

text: la-gpar

characteristic: Production Category

text: layer

characteristic: Production Type

characteristic: Tag

text: chicken gut metagenome

text: chicken gut metagenome


text: FALSE

text: FALSE

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FALSE

text: GSC

text: public

text: br-conv

text: broiler

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: sex


text: TRUE

text: FALSE

text: FALSE

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: br-conv

text: broiler

text: chicken gut metagenome

text: chicken gut metagenome


text: TRUE

text: FALSE

characteristic: ENA-CHECKLIST

text: FALSE

text: GSC

text: public

text: br-export

text: broiler

characteristic: SRA accession

characteristic: Submitter Id

text: chicken gut metagenome

characteristic: organism

text: chicken gut metagenome


characteristic: Age

text: FALSE

characteristic: Antibiotic Intake

text: TRUE

characteristic: Cage

characteristic: Farm

text: FALSE

text: GSC

text: public

text: la-conv

text: layer

text: chicken gut metagenome

text: chicken gut metagenome


text: FALSE

text: FALSE

text: TRUE

characteristic: Go Outdoors

text: GSC

text: public

text: la-out

characteristic: Production Category

text: layer

characteristic: Production Type

characteristic: Tag

text: chicken gut metagenome

text: chicken gut metagenome


text: FALSE

text: FALSE

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TRUE

text: GSC

text: public

text: br-label

text: broiler

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: sex


text: FALSE

text: FALSE

text: TRUE

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: la-org

text: layer

text: chicken gut metagenome

text: chicken gut metagenome


text: TRUE

text: TRUE

characteristic: ENA-CHECKLIST

text: FALSE

text: GSC

text: public

text: la-conv

text: layer

characteristic: SRA accession

characteristic: Submitter Id

text: chicken gut metagenome

characteristic: organism

text: chicken gut metagenome


characteristic: Age

text: FALSE

characteristic: Antibiotic Intake

text: TRUE

characteristic: Cage

characteristic: Farm

text: FALSE

text: GSC

text: public

text: br-gpar

text: broiler

text: chicken gut metagenome

text: chicken gut metagenome


text: FALSE

text: FALSE

text: TRUE

characteristic: Go Outdoors

text: GSC

text: public

text: br-org

characteristic: Production Category

text: broiler

characteristic: Production Type

characteristic: Tag

text: chicken gut metagenome

text: chicken gut metagenome


text: FALSE

text: FALSE

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FALSE

text: GSC

text: public

text: la-par

text: layer

text: chicken gut metagenome

text: chicken gut metagenome

characteristic: sex


text: FALSE

text: FALSE

text: FALSE

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: br-sel

text: broiler

text: chicken gut metagenome

text: chicken gut metagenome


text: Not applicable

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapien

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Not applicable

characteristic: PHENOTYPE

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: GSC

text: public

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Erasmus University Medical Center, Cancer Institute, Josephine Nefkens Building, Rotterdam

text: human

text: Germ Cell Cancer Cell Line

characteristic: description

text: Homo sapiens

text: Homo sapiens


NCCIT-NL

characteristic: External Id

text: Erasmus University Medical Center, Cancer Institute, Josephine Nefkens Building, Rotterdam

text: public

text: NCCIT-NL

text: human

text: Germ Cell Cancer Cell Line

text: Homo sapiens

text: Homo sapiens

text: NCCIT


characteristic: INSDC center name

text: public

text: human

text: Germ Cell Cancer Cell Line

text: Homo sapiens

text: Homo sapiens


NCCIT-P-DE

characteristic: INSDC first public

text: public

text: NCCIT-P-DE

text: human

text: Germ Cell Cancer Cell Line

text: Homo sapiens

text: Homo sapiens

text: NCCIT(Ger)


characteristic: INSDC last update

text: public

tag: Namespace:Associate Professor,  Icahn Institute of Genetics and Genomics.

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: For the prostate cancer dataset, de-identified data and biospecimens from human subjects consented under ongoing IRB approved protocols at the Icahn School of Medicine at Mount Sinai (GCO# 14-0318, 15-1135 and 10-1180) were collected from prostate cancer patients undergoing prostatectomy. Specifically, biospecimen included prostate cancer and adjacent prostate non-tumoral tissue from biopsy or prostatectomy, urine, and serum, where applicable. Human serum was collected using BD Vacutainer blood collection tubes (i.e., serum separation tubes). First, whole blood was centrifuged at 2,000g for 30 minutes at 4ºC followed by another centrifugation of the serum at 12,000g for 45 minutes at 4ºC to remove larger EVs (e.g. microvesicles and apoptotic bodies). The supernatant was carefully transferred to ultracentrifugation tubes (Beckman coulter, thick wall polypropylene tube, Cat. #355642) and ultracentrifuged for two rounds at 110,000g for 2 hours at 4ºC. The pellet was finally resuspend in 1 mL PBS and stored at -80C for further analysis. EVs from human urine were collected with the above mentioned protocol. Total RNA was extracted from the serum/urine bump fraction (nanoDLD, serum only), UC isolates, or bulk tissue using the Total Exosome and Protein Isolation Kit (Invitrogen 4478545) by following the protocol. Indexed Illumina Small RNA libraries were prepared with the SMARTer® smRNA-Seq Kit (Clontech Laboratories, Inc.)

text: prostate cancer

characteristic: disease

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: non-tumoral adjacent tissue

characteristic: organism part

text: no

characteristic: replicate

text: Homo sapiens

text: unknown

characteristic: sex


characteristic: ENA-CHECKLIST

text: Associate Professor,  Icahn Institute of Genetics and Genomics.

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: prostate cancer

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tumor

text: no

text: Homo sapiens

text: unknown


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: description

text: prostate cancer

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: non-tumoral adjacent tissue

text: no

text: Homo sapiens

text: unknown

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: prostate cancer

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood serum

text: no

text: Homo sapiens

text: unknown


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: prostate cancer

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood serum

characteristic: organism part

text: yes

characteristic: replicate

text: Homo sapiens

text: unknown

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: prostate cancer

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: urine

text: no

text: Homo sapiens

text: unknown


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

characteristic: description

text: prostate cancer

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: urine

text: yes

text: Homo sapiens

text: unknown

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

tag: Namespace:Professor Icahn Institute for Genetics and Genomics

characteristic: age

text: ArrayExpress

characteristic: broker name

text: HCV

characteristic: clinical history

text: human

text: Protocols: Samples for the HCC ‘biomarker discovery’ cohort were collected from consented patients enrolled in an IRB approved protocol to derive new HCC biomarkers from blood (HS-15-00540) or provided by the Tisch Cancer Institute Biorepository (HSM#10-00135) at the Icahn School of Medicine at Mount Sinai. Peripheral venous blood was collected in EDTA containing vacutainer (BD Vacutainer), stored on ice, and processed within 4 hours of collection. On the day of collection, we performed two centrifugation steps to separate plasma from other blood components and minimize cellular debris from our final isolate. First, whole blood was centrifuged at 1,600g for 10 minutes at 4ºC followed by another centrifugation of the plasma at 16,000g for 10 minutes at 4ºC to remove larger EVs (e.g. microvesicles and apoptotic bodies). The supernatant was then stored at -80°C until the ultracentrifugation was performed. For this, samples were thawed on ice and 0.5 - 1 mL of plasma was diluted in ~25 mL PBS and centrifuged at 120,000g for 2 hours at 4°C with a Type 50.2 Ti Fixed-Angle Titanium rotor (Beckman Coulter, k-factor = 69). Isolates were directly used for RNA extraction (see below) or resuspended in PBS and stored at -20°C until further analysis. For the HCC biomarker discovery and biomarker validation datasets, RNA was extracted from the UC isolate on the same day of ultracentrifugation using the miRNeasy Plasma/Serum kit (Qiagen) according to the manufacturer's recommendations including the spike-in C. elegans miR-39 miRNA mimic and stored at -80°C until further use. RNA quantitation and quality was assessed on a 2100 Bioanalyzer Instrument (Agilent) with the RNA 6000 Pico Kit (Agilent). Indexed Illumina Small RNA libraries were prepared with the SMARTer® smRNA-Seq Kit (Clontech Laboratories, Inc.)

text: hepatocellular carcinoma

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Professor Icahn Institute for Genetics and Genomics

text: public

characteristic: SRA accession

text: ArrayExpress

text: NASH

text: human

text: liver disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood plasma

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: NASH

text: human

characteristic: common name

text: hepatocellular carcinoma

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: HBV

text: human

characteristic: description

text: liver disease

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: HCV

characteristic: clinical history

text: human

text: hepatocellular carcinoma

characteristic: disease

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: HBV

text: human

text: hepatocellular carcinoma

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood plasma

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: HCV

text: human

characteristic: common name

text: liver disease

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: NASH

text: human

characteristic: description

text: hepatocellular carcinoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: human

text: Germ Cell Cancer Cell Line

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: SRA accession

tag: Namespace:Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Originating lab: Wales Specialist Virology Centre Sequencing lab: Pathogen Genomics Unit

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


text: OXFORD

text: public

unit: day

characteristic: age

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Kitaake

characteristic: cultivar

text: Protocols: Leaf discs were collected from the mid-distal leaf blade portion of the youngest fully expanded leaf from the central stem of 4 weeks old rice plants, frozen in liquid N2 and stored at −80 °C. NA Rice plants were grown in a controlled environment growth chamber (Model PGC Flex, Conviron, Winnipeg, MB, Canada) under ambient CO2 partial pressure, 16 h photoperiod, 28 C day, 22 C night and 60% humidity. Irradiance of 400 mol photons m2 s1 (if not stated otherwise) was supplied by a mixture of fluorescent tubes (Master TL5 HO 54W/840, Philips Lighting, The Netherlands) and halogen incandescent globes (42W 2800K warm white clear glass 630 lumens, CLA, Brookvale, Australia). Plants were individually grown in 1-L pots in a soil mix composed by 80% peat/10% perlite/10% vermiculite (pH 5.6-5.8) mixed with 5 g of slow-release fertilizer (Osmocote, Evergreen Garden Care, Australia) supplied once in the beginning of the growth cycle. All pots were kept at field water capacity. NA NA Frozen samples were homogenised using the Qiagen TissueLyser II (Qiagen, Venlo, The Netherlands). RNA was extracted using the RNeasy Plant Mini Kit (Qiagen, Venlo, The Netherlands). DNA from the samples was removed using the Ambion TURBO DNA free kit (Thermo Fisher Scientific, Tewksbury, MA), and RNA quality were determined using a NanoDrop (Thermo Fisher Scientific, Tewksbury, MA). Library construction was performed by BGI using Illumina TRUseq protocol

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: ZmCA, ZmPEPC, ZmMDH, ZmME, ZmPPDK

characteristic: genotype

text: not applicable

characteristic: isolate

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

characteristic: organism part

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Japanese rice

text: Kitaake

text: leaf production stage

text: wild type genotype

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


text: Instituto de Biomedicina de Valencia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Instituto de Biomedicina de Valencia

characteristic: Submitter Id

text: Clinical isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Quadram Institute Bioscience

text: public

tag: Namespace:Quadram Institute Bioscience

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: Quadram Institute Bioscience

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil microbiome

characteristic: common name

text: empty control 2

characteristic: description

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: empty control 3

text: soil metagenome

characteristic: organism

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: empty control 4

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: empty control 5

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: empty control 6

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: empty control 7

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: PCR control 1

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: PCR control 3

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 61 sub-block 8

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 73 sub-block 5

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 81 sub-block 113

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 83 sub-block 73

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 61 sub-block 96

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 68 sub-block 109

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 77 sub-block 4

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 73 sub-block 20

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 81 sub-block 94

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 83 sub-block 64

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 61 sub-block 88

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 73 sub-block 9

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 68 sub-block 5

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 81 sub-block 111

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 68 sub-block 78

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 68 sub-block 20

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 73 sub-block 114

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 77 sub-block 68

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 68 sub-block 114

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 73 sub-block 58

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 77 sub-block 99

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 83 sub-block 119

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 81 sub-block 58

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 77 sub-block 58

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 61 sub-block 101

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 61 sub-block 71

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 83 sub-block 110

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 83 sub-block 72

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 77 sub-block 63

text: soil metagenome

text: soil metagenome


text: UPSC

text: public

text: soil microbiome

text: soil sample from tree family 81 sub-block 22

text: soil metagenome

text: soil metagenome


text: ICM

text: public

characteristic: collection date

text: :This study includes 16S rRNA-gene sequences (V3-V4 region) of pico-, nano- and microplankton from the Catalan and Balearic coasts

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: uncultured eukaryote

text: DEVOTES

characteristic: project name

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA gene pico-, nano- and micro-plankton from cross-shore gradients of the NW Mediterranean Coast

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9205:HeLa cells_ActD_treated_0h_TRIzol_rep1

tag: Namespace:National Center for Protein Sciences Beijing

text: ArrayExpress

characteristic: broker name

text: HeLa

text: cervical cancer cell

text: human

text: Protocols: The HeLa cells were washed with 5mL cold PBS for three times, followed by irradiation with 254-nm UV light at 0.25 J/cm2 on ice using a UV cross-linker. After adding 2mL cold PBS, the cells were harvested using a cell lifter and collected in a 1.5-mL RNase-free tube.For RNA harvested by TRIzol samples,cells were harvested using a cell lifter and collected in a 1.5-mL RNase-free tube directly. HeLa cells were grown in DMEM supplemented with 10% FBS, 100 U/mL penicillin, and 100 μg/mL streptomycin at 37°C in a 5% CO2 atmosphere. For the actinomycin D (ActD) treatment experiment, HeLa cells were treated with 5 μM ActD at 37°C in DMEM medium (10% FBS, 100 U/mL penicillin, and 100 g/mL streptomycin) for 0, 2, 5 and 9 hours before collecting the cells. For the actinomycin D (ActD) treatment experiment, HeLa cells were treated with 5 μM ActD at 37°C in DMEM medium (10% FBS, 100 U/mL penicillin, and 100 g/mL streptomycin) for 0, 2, 5 and 9 hours before collecting the cells. The RP-complexes from HeLa cells were captured by PP, proteinase K was added to digest protein, the eluted RNAs were further purified by TRIzol following the manufacturer’s instructions. For other samples, RNA was harvested using Trizol reagent. RNA was used in each replicate to construct the cDNA library using a NEBNext Ultra RNA Library Prep Kit for Illumina following the manufacturer’s instructions.

text: cell mature

characteristic: developmental stage

text: cervical cancer

characteristic: disease

text: treated with ActD for 0 hours

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: cervix epithelium

characteristic: organism part

text: Homo sapiens

text: HeLa cells_ActD_treated_0h_TRIzol_rep1

characteristic: title


text: National Center for Protein Sciences Beijing

text: public

text: E-MTAB-9205:HeLa cells_ActD_treated_0h_TRIzol_rep2

characteristic: Submitter Id

text: ArrayExpress

text: HeLa

text: cervical cancer cell

text: human

characteristic: common name

characteristic: description

text: cell mature

text: cervical cancer

text: treated with ActD for 0 hours

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cervix epithelium

text: Homo sapiens

text: HeLa cells_ActD_treated_0h_TRIzol_rep2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-9205:HeLa cells_ActD_treated_0h_TRIzol_rep3

text: ArrayExpress

text: HeLa

text: cervical cancer cell

text: human

text: cell mature

text: cervical cancer

text: treated with ActD for 0 hours

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cervix epithelium

text: Homo sapiens

text: HeLa cells_ActD_treated_0h_TRIzol_rep3


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9205:HeLa cells_ActD_treated_2h_TRIzol_rep1

text: ArrayExpress

text: HeLa

text: cervical cancer cell

text: human

text: cell mature

text: cervical cancer

text: treated with ActD for 2 hours

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cervix epithelium

text: Homo sapiens

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text: cervix epithelium

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