characteristic: ENA-CHECKLIST

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text: OXFORD

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text: E-MTAB-11446:ZjPCKpro_dTALE1_STAP_62_T0_23_T1_3_pool_1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Kitaake

text: Protocols: To minimize biological variation due to sampling error, three biological replicates of each ZjPCKpro:dTALE1-STAP:GUS transgenic event were grown. T2 seed derived from three homozygous T1 lines for each independent insertion event were used – i.e. STAP4 - lines 4.2, 4.5, 4.6; STAP45 - lines 17.3, 17.5, 17.9; STAP56 - lines 21.3, 21.5, 21.8; and STAP62 - lines 23.1, 23.3, 23.8 & lines 24.3, 24.6, 24.8. Seed were sterilized and germinated on MS-hyg media (2.15 g/L MS salts & vitamins, 15 g/L sucrose, 0.5 g/L 2-(N-morpholino) ethanesulfonic acid (MES) pH 5.8, 2 g/L phytagel, 20 mg/L hygromycin) in a growth cabinet with a 16 h light/8 h dark photoperiod, light intensity of 150 μmol photons m−2 s−1, 24oC constant temperature and relative humidity of 60%. After 7 days, plants were transferred into 0.5 L pots with soil and grown in the controlled environment chamber until the 4th leaf was fully expanded. Leaf tissue (0.5 cm2) from the mid-distal leaf blade portion of the 4th fully expanded leaf was collected from ten plants per line, pooled into a 2 mL centrifuge tube, frozen in liquid N2 and stored at minus 80oC. For each line, five technical replicate pools were obtained. Samples were collected between 9am and 11am on the same day. Frozen samples were homogenized using a TissueLyser II. For dTALE2-STAP2:GUS lines, T1 and wild-type seeds were sterilized and germinated in soil at 28°C with 16 h light (400 μmol photons m−2 s−1) and 8 h dark cycle. Two independent T1 lines each of ZjPCKpro:dTALE2-STAP2.4:GUS and ZmPEPCpro:dTALE2-STAP2.4:GUS were grown, plus one T1 line of ZmPEPCpro:mTurquoise-STAP2.4:GUS. DNA was extracted from leaf 2 of 21 day old seedlings for genotyping by PCR, using HptF: CGCAAGGAATCGGTCAATACA and HptR: GATGCCTCCGCTCGAAGTAG primers to amplify the hpt transgene sequence. Plants with confirmed transgene insertions were selected for RNAseq analysis. For each T1 line, leaf 4 was collected from three individual 21 day old seedlings. For the dTALE1 lines RNA was extracted using an RNeasy Plant Mini Kit. DNA was removed from the samples using an Ambion TURBO DNA free kit and RNA quality was determined using a NanoDrop. For the dTALE2 lines RNA was extracted using Trizol reagent (Invitrogen, Waltham, Massachusetts, US) and the RNeasy Plant Mini Kit. The quality of total RNA was checked using an Agilent Technologies 2100 Bioanalyzer (Agilent Technologies, Santa Clara, California, US) by the Institute of Molecular Biology Genomics Core at Academia Sinica. library construction was performed by BGI Tech Solutions Co., Limited (Tai Po, N.T., Hongkong)

text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


status: PUBLIC

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text: Japanese rice

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text: Kitaake

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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

characteristic: organism part

text: Oryza sativa Japonica Group

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text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

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text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: not applicable

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text: vascular leaf

text: Oryza sativa Japonica Group


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text: vascular leaf

text: Oryza sativa Japonica Group


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text: leaf production stage

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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

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text: Oryza sativa Japonica Group


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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

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text: Oryza sativa Japonica Group

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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

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text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group

characteristic: title


text: OXFORD

text: public

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text: Japanese rice

characteristic: common name

text: Kitaake

characteristic: cultivar

text: Protocols: To minimize biological variation due to sampling error, three biological replicates of each ZjPCKpro:dTALE1-STAP:GUS transgenic event were grown. T2 seed derived from three homozygous T1 lines for each independent insertion event were used – i.e. STAP4 - lines 4.2, 4.5, 4.6; STAP45 - lines 17.3, 17.5, 17.9; STAP56 - lines 21.3, 21.5, 21.8; and STAP62 - lines 23.1, 23.3, 23.8 & lines 24.3, 24.6, 24.8. Seed were sterilized and germinated on MS-hyg media (2.15 g/L MS salts & vitamins, 15 g/L sucrose, 0.5 g/L 2-(N-morpholino) ethanesulfonic acid (MES) pH 5.8, 2 g/L phytagel, 20 mg/L hygromycin) in a growth cabinet with a 16 h light/8 h dark photoperiod, light intensity of 150 μmol photons m−2 s−1, 24oC constant temperature and relative humidity of 60%. After 7 days, plants were transferred into 0.5 L pots with soil and grown in the controlled environment chamber until the 4th leaf was fully expanded. Leaf tissue (0.5 cm2) from the mid-distal leaf blade portion of the 4th fully expanded leaf was collected from ten plants per line, pooled into a 2 mL centrifuge tube, frozen in liquid N2 and stored at minus 80oC. For each line, five technical replicate pools were obtained. Samples were collected between 9am and 11am on the same day. Frozen samples were homogenized using a TissueLyser II. For dTALE2-STAP2:GUS lines, T1 and wild-type seeds were sterilized and germinated in soil at 28°C with 16 h light (400 μmol photons m−2 s−1) and 8 h dark cycle. Two independent T1 lines each of ZjPCKpro:dTALE2-STAP2.4:GUS and ZmPEPCpro:dTALE2-STAP2.4:GUS were grown, plus one T1 line of ZmPEPCpro:mTurquoise-STAP2.4:GUS. DNA was extracted from leaf 2 of 21 day old seedlings for genotyping by PCR, using HptF: CGCAAGGAATCGGTCAATACA and HptR: GATGCCTCCGCTCGAAGTAG primers to amplify the hpt transgene sequence. Plants with confirmed transgene insertions were selected for RNAseq analysis. For each T1 line, leaf 4 was collected from three individual 21 day old seedlings. For the dTALE1 lines RNA was extracted using an RNeasy Plant Mini Kit. DNA was removed from the samples using an Ambion TURBO DNA free kit and RNA quality was determined using a NanoDrop. For the dTALE2 lines RNA was extracted using Trizol reagent (Invitrogen, Waltham, Massachusetts, US) and the RNeasy Plant Mini Kit. The quality of total RNA was checked using an Agilent Technologies 2100 Bioanalyzer (Agilent Technologies, Santa Clara, California, US) by the Institute of Molecular Biology Genomics Core at Academia Sinica. library construction was performed by BGI Tech Solutions Co., Limited (Tai Po, N.T., Hongkong)

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: not applicable

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: OXFORD

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characteristic: age

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text: leaf production stage

characteristic: genotype

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: leaf production stage

text: not applicable

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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: ArrayExpress

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text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

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text: Oryza sativa Japonica Group


text: OXFORD

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text: ArrayExpress

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text: Oryza sativa Japonica Group

text: vascular leaf

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characteristic: title


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characteristic: organism

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

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text: leaf production stage

text: not applicable

characteristic: isolate

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: Oryza sativa Japonica Group

text: vascular leaf

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text: Oryza sativa Japonica Group


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text: vascular leaf

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characteristic: title


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text: not applicable

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


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text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


text: OXFORD

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characteristic: description

text: leaf production stage

characteristic: developmental stage

text: not applicable

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text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: External Id

text: OXFORD

text: public

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characteristic: age

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characteristic: broker name

text: Japanese rice

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text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

characteristic: organism part

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

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text: Oryza sativa Japonica Group

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text: vascular leaf

text: Oryza sativa Japonica Group

characteristic: title


text: OXFORD

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text: ArrayExpress

text: Japanese rice

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text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


text: OXFORD

text: public

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text: Japanese rice

characteristic: common name

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characteristic: cultivar

characteristic: description

text: leaf production stage

characteristic: developmental stage

characteristic: genotype

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: External Id

text: OXFORD

text: public

text: E-MTAB-11446:ZmPEPCpro_dTALE2_STAP_4_T0_33_T1_1_leaf_sample_1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Kitaake

text: Protocols: To minimize biological variation due to sampling error, three biological replicates of each ZjPCKpro:dTALE1-STAP:GUS transgenic event were grown. T2 seed derived from three homozygous T1 lines for each independent insertion event were used – i.e. STAP4 - lines 4.2, 4.5, 4.6; STAP45 - lines 17.3, 17.5, 17.9; STAP56 - lines 21.3, 21.5, 21.8; and STAP62 - lines 23.1, 23.3, 23.8 & lines 24.3, 24.6, 24.8. Seed were sterilized and germinated on MS-hyg media (2.15 g/L MS salts & vitamins, 15 g/L sucrose, 0.5 g/L 2-(N-morpholino) ethanesulfonic acid (MES) pH 5.8, 2 g/L phytagel, 20 mg/L hygromycin) in a growth cabinet with a 16 h light/8 h dark photoperiod, light intensity of 150 μmol photons m−2 s−1, 24oC constant temperature and relative humidity of 60%. After 7 days, plants were transferred into 0.5 L pots with soil and grown in the controlled environment chamber until the 4th leaf was fully expanded. Leaf tissue (0.5 cm2) from the mid-distal leaf blade portion of the 4th fully expanded leaf was collected from ten plants per line, pooled into a 2 mL centrifuge tube, frozen in liquid N2 and stored at minus 80oC. For each line, five technical replicate pools were obtained. Samples were collected between 9am and 11am on the same day. Frozen samples were homogenized using a TissueLyser II. For dTALE2-STAP2:GUS lines, T1 and wild-type seeds were sterilized and germinated in soil at 28°C with 16 h light (400 μmol photons m−2 s−1) and 8 h dark cycle. Two independent T1 lines each of ZjPCKpro:dTALE2-STAP2.4:GUS and ZmPEPCpro:dTALE2-STAP2.4:GUS were grown, plus one T1 line of ZmPEPCpro:mTurquoise-STAP2.4:GUS. DNA was extracted from leaf 2 of 21 day old seedlings for genotyping by PCR, using HptF: CGCAAGGAATCGGTCAATACA and HptR: GATGCCTCCGCTCGAAGTAG primers to amplify the hpt transgene sequence. Plants with confirmed transgene insertions were selected for RNAseq analysis. For each T1 line, leaf 4 was collected from three individual 21 day old seedlings. For the dTALE1 lines RNA was extracted using an RNeasy Plant Mini Kit. DNA was removed from the samples using an Ambion TURBO DNA free kit and RNA quality was determined using a NanoDrop. For the dTALE2 lines RNA was extracted using Trizol reagent (Invitrogen, Waltham, Massachusetts, US) and the RNeasy Plant Mini Kit. The quality of total RNA was checked using an Agilent Technologies 2100 Bioanalyzer (Agilent Technologies, Santa Clara, California, US) by the Institute of Molecular Biology Genomics Core at Academia Sinica. library construction was performed by BGI Tech Solutions Co., Limited (Tai Po, N.T., Hongkong)

text: leaf production stage

text: not applicable

characteristic: isolate

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11446:ZmPEPCpro_dTALE2_STAP_4_T0_33_T1_1_leaf_sample_2

text: ArrayExpress

text: Japanese rice

text: Kitaake

text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

characteristic: organism part

text: Oryza sativa Japonica Group


text: OXFORD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11446:ZmPEPCpro_dTALE2_STAP_4_T0_33_T1_1_leaf_sample_3

characteristic: Submitter Id

text: ArrayExpress

text: Japanese rice

text: Kitaake

text: leaf production stage

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group

characteristic: title


text: OXFORD

text: public

text: E-MTAB-11446:ZmPEPCpro_mTurquoise_STAP_4_T0_2_T1_1_leaf_sample_1

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Kitaake

characteristic: cultivar

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: not applicable

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

characteristic: External Id

text: OXFORD

text: public

text: E-MTAB-11446:ZmPEPCpro_mTurquoise_STAP_4_T0_2_T1_1_leaf_sample_3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Kitaake

text: leaf production stage

characteristic: genotype

text: not applicable

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11446:ZmPEPCpro_mTurquoise_STAP_4_T0_2_T1_1_leaf_sample_4

text: ArrayExpress

text: Japanese rice

text: Kitaake

text: leaf production stage

text: not applicable

characteristic: isolate

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: vascular leaf

text: Oryza sativa Japonica Group


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH, BHOPAL

characteristic: Submitter Id

text: chicken

text: Broiler chicken

text: Adult

text: India

characteristic: geographic location (country and/or sea)

text: Bhopal

characteristic: geographic location (region and locality)

text: 23.2879° N 77.2743° E

text: Gallus gallus

text: Gallus gallus

text: Muscle

text: Broiler 10X

text: Broiler

characteristic: variety


characteristic: ENA-CHECKLIST

text: University of Vienna

text: public

tag: Namespace:University of Vienna

text: human

characteristic: common name

text: ancient DNA extracted from human osteological remains

characteristic: description

text: Italy

text: petrous

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Vienna

text: public

text: human

text: Tunisia

text: petrous

text: Homo sapiens

text: Homo sapiens

text: bone


INTERC-STUDY-BAH

characteristic: ENA-LAST-UPDATE

text: FEM

characteristic: INSDC center name

text: public

text: INTERC-STUDY-BAH

text: Eco-AlpsWater project: 12S rRNA sequences determined in mock and environmental samples

text: lake

characteristic: environment (biome)

text: ecological community

characteristic: environment (feature)

text: released organic matter

characteristic: environment (material)

text: France

text: Bourget

text: metagenome

characteristic: investigation type

text: metagenome

text: MiFish-U-F(5' GTCGGTAAAACTCGTGCCAGC 3'); MiFish-U-R(5' CATAGTGGGGTATCTAATCCCAGTTTG 3')

characteristic: pcr primers

text: Eco-AlpsWater 12S rRNA sequences: an intercalibration exercise

characteristic: project name

characteristic: replicate

text: BAH

characteristic: sampletag

text: metagenome

text: CTACTAC GTAGAGT CCTTAGA

characteristic: seqtag

text: Illumina MiSeq

characteristic: sequencing method

text: FEM

characteristic: sequencing run

text: 12S rRNA

characteristic: target gene

text: 163-185 bp

characteristic: target subfragment

text: water

characteristic: water environmental package


INTERC-STUDY-BAB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: INTERC-STUDY-BAB

characteristic: Submitter Id

characteristic: description

text: lake

text: ecological community

text: released organic matter

text: France

characteristic: geographic location (country and/or sea)

text: Bourget

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

characteristic: organism

text: BAB

text: metagenome

text: CTACTAC GTAGAGT CCTTAGA

text: Illumina MiSeq

text: FEM

text: 12S rRNA

text: 163-185 bp

characteristic: title

text: water


INTERC-STUDY-BAM

characteristic: ENA-LAST-UPDATE

text: FEM

characteristic: INSDC center name

text: public

text: INTERC-STUDY-BAM

text: lake

characteristic: environment (biome)

text: ecological community

characteristic: environment (feature)

text: released organic matter

characteristic: environment (material)

text: France

text: Bourget

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: pcr primers

characteristic: project name

characteristic: replicate

text: BAM

characteristic: sampletag

text: metagenome

text: CTACTAC GTAGAGT CCTTAGA

characteristic: seqtag

text: Illumina MiSeq

characteristic: sequencing method

text: FEM

characteristic: sequencing run

text: 12S rRNA

text: 163-185 bp

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: fish farm

text: mock community

text: released organic matter

text: metagenome

text: metagenome

text: metagenome

text: CTACTAC GTAGAGT CCTTAGA

text: Illumina MiSeq

text: FEM

text: 12S rRNA

characteristic: target gene

text: 163-185 bp

characteristic: target subfragment

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

text: FEM

characteristic: INSDC center name

text: public

text: mock community

characteristic: environment (feature)

text: fin clip

characteristic: environment (material)

text: mock sample

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: replicate

text: metagenome

text: CTACTAC GTAGAGT CCTTAGA

text: Illumina MiSeq

text: FEM

text: 12S rRNA

text: 163-185 bp

characteristic: title


INTERC-STUDY-T

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: INTERC-STUDY-T

text: negative control

text: metagenome

text: T

characteristic: sampletag

text: metagenome

text: CTACTAC GTAGAGT CCTTAGA

characteristic: seqtag

text: Illumina MiSeq

characteristic: sequencing method

text: FEM

characteristic: sequencing run

text: 12S rRNA

text: 163-185 bp


characteristic: ENA-LAST-UPDATE

text: FEM

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: lake

characteristic: environment (biome)

text: ecological community

characteristic: environment (feature)

text: released organic matter

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: Bourget

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

text: BAH

text: metagenome

text: Illumina MiSeq

text: NM

text: 12S rRNA

characteristic: target gene

text: 163-185 bp

characteristic: target subfragment

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: lake

text: ecological community

text: released organic matter

text: France

text: Bourget

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

characteristic: project name

characteristic: replicate

text: BAB

characteristic: sampletag

text: metagenome

text: Illumina MiSeq

text: NM

text: 12S rRNA

text: 163-185 bp

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

text: FEM

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: lake

characteristic: environment (biome)

text: ecological community

characteristic: environment (feature)

text: released organic matter

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

text: Bourget

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

text: BAM

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: NM

characteristic: sequencing run

text: 12S rRNA

text: 163-185 bp

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: fish farm

text: mock community

text: released organic matter

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: pcr primers

text: metagenome

text: Illumina MiSeq

text: NM

text: 12S rRNA

characteristic: target gene

text: 163-185 bp

characteristic: target subfragment

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

text: FEM

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: mock community

characteristic: environment (feature)

text: fin clip

characteristic: environment (material)

text: mock sample

text: metagenome

characteristic: project name

characteristic: replicate

characteristic: sampletag

text: metagenome

text: Illumina MiSeq

text: NM

text: 12S rRNA

text: 163-185 bp

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: negative control

characteristic: investigation type

text: metagenome

text: T

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: NM

characteristic: sequencing run

text: 12S rRNA

text: 163-185 bp


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BASEL, SWITZERLAND

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BASEL, SWITZERLAND

characteristic: Submitter Id

text: Mycobacterium tuberculosis

characteristic: common name

text: Bosnia and Herzegovina

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens sapiens

characteristic: host scientific name

text: Human

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Collection of Mycobacterium tuberculosis samples from various countries


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Switzerland

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


characteristic: External Id

text: UNIVERSITY OF BASEL, SWITZERLAND

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Italy

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

characteristic: INSDC status

text: Mycobacterium tuberculosis

text: Gambia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Gambia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: USA

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Serbia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Spain

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Turkey

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Georgia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Italy

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Georgia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Portugal

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Russia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Iraq

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Gabon

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Sierra Leone

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Swaziland

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Botswana

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: South Africa

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Kenya

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Cote d'Ivoire

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Democratic Republic of the Congo

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Peru

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Nigeria

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Peru

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: South Africa

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Georgia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Namibia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Madagascar

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Georgia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Russia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Tanzania

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Thailand

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Nepal

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Laos

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Gambia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Albania

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Switzerland

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Hungary

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Tanzania

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Viet Nam

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: China

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Thailand

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Portugal

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Georgia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Nepal

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Georgia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Gambia

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Democratic Republic of the Congo

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Peru

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: South Africa

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Cote d'Ivoire

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Nigeria

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Botswana

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Kenya

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Peru

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: South Africa

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Madagascar

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Taiwan

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: Mycobacterium tuberculosis

text: Thailand

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: UNIVERSITY OF BASEL, SWITZERLAND

text: public

text: not collected

text: Mycobacterium tuberculosis

text: Tanzania

text: diseased

text: Homo sapiens sapiens

text: Human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: public

tag: Namespace:Institute for Medical Microbiology and Hygiene, University Hospital Tuebingen

text: house mouse

characteristic: description

text: Yes

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Institute for Medical Microbiology and Hygiene, University Hospital Tuebingen

characteristic: INSDC center name

text: public

text: house mouse

text: Yes

text: Mus musculus

text: Mus musculus

text: female


text: ROBERT KOCH INSTITUT

text: public

characteristic: SRA accession

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: Submitter Id

text: isolate obtained from a human listeriosis case in Germany

text: Germany

text: diseased

text: Homo sapiens

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


text: ROBERT KOCH INSTITUT

text: public

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: human listeriosis

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IIa

text: clinical isolate of L. monocytogenes

text: food isolate of L. monocytogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: ROBERT KOCH INSTITUT

text: public

text: Switzerland

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IIa

text: clinical isolate of L. monocytogenes

text: food isolate of L. monocytogenes

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University medical center Gottingen Department of Gynecology and Obstetrics

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: PANC1 cells were seeded in 6-well plates and transfected with 20 nM siRNA (siControl or siROBO3) using Lipofectamine 2000. RNA was extracted 72 hours after transfdection. Total RNA was extracted from PANC1 cells with TRIzol (Invitrogen) following the manufacturer's recommendations. mRNA sequencing libraries were generated with the TruSeq RNA Library Prep kits (Illumina) according to the manufacturer’s instructions. The size of the generated libraries was estimated on High Sensitivity DNA chip (Agilent) using a Bioanalyser 2100 (Agilent).

characteristic: description

text: adult

characteristic: developmental stage

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: University medical center Gottingen Department of Gynecology and Obstetrics

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: pancreatic ductal adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

tag: Namespace:Department of Biosciences and Nutrition, Karolinska Institutet

text: ArrayExpress

text: embryonic stem cell

text: human

text: Protocols: Doxycycline-induced and control DUX4-TetOn hESCs were collected immediately, 24 h, and 48 h after 15 min, 30 min of doxycycline, or without doxycycline treatment. Naïve H9 hESCs were collected by hand picking the colonies from the cell culture dishes, using sterile needles. Conventional primed H9 hESCs were collected by washing the cells once with PBS and lysing the culture according to the NucleoSpin RNA kit protocol. For the NaPi2b+/- cells, the DUX4-TetOn hESCs were sorted by FACS at 6 h after induction and collected after a further 6 h of culture. Total RNA was isolated using NucleoSpin RNA kit (Macherey Nagel) according to the manufacturer’s protocol. We used 20 ng of RNA to generate a 48-plex RNA-seq library using a modified STRT method with unique molecular identifiers (UMIs) (Islam et al., 2011, 2014). Briefly, RNA samples were placed in a 48-well plate, and a universal primer, template-switching oligo-nucleotides, and a well-specific 6 bp barcode sequence (for sample identification) were added to each well (Krjutškov et al., 2016). We pooled the synthesized cDNAs into one library, performed fragmentation to 200–400bp using an M220 Focused-ultrasonicator (Covaris), captured the 5’-prime fragments, added an adapter, and amplified the targets by PCR.

text: embryo stage

text: normal

text: not applicable

characteristic: fraction

text: TetOn DUX4-full-length

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: 15 min doxycycline-induction

characteristic: stimulus


text: Department of Biosciences and Nutrition, Karolinska Institutet

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: not applicable

text: TetOn DUX4-full-length

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: 15 min doxycycline-induction

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: TetOn DUX4-full-length

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

characteristic: organism part

text: Homo sapiens

text: 15 min doxycycline-induction


E-MTAB-10569_2:dox unsorted_1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: E-MTAB-10569_2:dox unsorted_1

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: unsorted

characteristic: fraction

text: TetOn DUX4-full-length

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: 15 min doxycycline-induction

text: dox unsorted_1


E-MTAB-10569_2:dox unsorted_2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10569_2:dox unsorted_2

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: unsorted

text: TetOn DUX4-full-length

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: 15 min doxycycline-induction

characteristic: stimulus

text: dox unsorted_2


E-MTAB-10569_2:dox unsorted_3

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-10569_2:dox unsorted_3

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: unsorted

text: TetOn DUX4-full-length

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: 15 min doxycycline-induction

text: dox unsorted_3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: not applicable

text: TetOn DUX4-full-length

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

characteristic: organism part

text: Homo sapiens

text: 30 min doxycycline-induction


E-MTAB-10569_2:H9 naive_1

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10569_2:H9 naive_1

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: not applicable

characteristic: fraction

text: wild type genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: H9 naive_1


E-MTAB-10569_2:H9 naive_2

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-10569_2:H9 naive_2

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: not applicable

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

characteristic: stimulus

text: H9 naive_2


E-MTAB-10569_2:H9 naive_3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-10569_2:H9 naive_3

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: not applicable

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: H9 naive_3

characteristic: title


E-MTAB-10569_2:H9 primed_1

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-10569_2:H9 primed_1

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: not applicable

text: wild type genotype

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

characteristic: organism part

text: Homo sapiens

text: H9 primed_1


E-MTAB-10569_2:H9 primed_2

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-10569_2:H9 primed_2

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: not applicable

characteristic: fraction

text: wild type genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: H9 primed_2


E-MTAB-10569_2:H9 primed_3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-10569_2:H9 primed_3

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: not applicable

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

characteristic: stimulus

text: H9 primed_3


E-MTAB-10569_2:No dox_1

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-10569_2:No dox_1

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: common name

characteristic: description

text: embryo stage

text: normal

text: not applicable

text: TetOn DUX4-full-length

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: No dox_1

characteristic: title


E-MTAB-10569_2:No dox_2

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-10569_2:No dox_2

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: not applicable

text: TetOn DUX4-full-length

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

characteristic: organism part

text: Homo sapiens

text: No dox_2


E-MTAB-10569_2:No dox_3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-10569_2:No dox_3

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: not applicable

characteristic: fraction

text: TetOn DUX4-full-length

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

text: No dox_3


characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

text: embryo stage

text: normal

text: not applicable

text: TetOn DUX4-full-length

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: inner cell mass

text: Homo sapiens

characteristic: stimulus


characteristic: ENA-LAST-UPDATE

text: University of Tuscia

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:University of Tuscia

text: fire salamander

characteristic: common name

text: R530 - phenotipe slow

characteristic: description

text: Salamandra salamandra

text: Salamandra salamandra

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Tuscia

text: public

text: fire salamander

text: R531 - phenotipe fast

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: fire salamander

text: R538 - phenotipe slow

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R541 - phenotipe fast

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R547 - phenotipe fast

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R560 - phenotipe slow

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R564 - phenotipe slow

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R565 - phenotipe fast

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R572 - phenotipe fast

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: fire salamander

text: R573 - phenotipe slow

text: Salamandra salamandra

text: Salamandra salamandra


text: University of Tuscia

text: public

text: HS_27 - sardegna - sud - slow/shy - low greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_44 - sardegna - sud - slow/shy - low greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_9 - sardegna - nord - slow/shy - low greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_17 - sardegna - nord - slow/shy - low greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_87 - corsica - sud - fast/bold - high greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_93 - corsica - sud - fast/bold - high greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_104 - corsica - nord - fast/bold - high greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_111 - corsica - nord - fast/bold - high greeness

text: Hyla sarda

text: Hyla sarda


text: University of Tuscia

text: public

text: HS_56 - Elba

text: Hyla sarda

text: Hyla sarda


text: CHINA ACADEMY

text: public

tag: Namespace:CHINA ACADEMY

text: sludge

characteristic: environment (biome)

text: anearobic digestion

characteristic: environment (feature)

text: anearobic digestion

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: environmental samples

characteristic: project name

text: environmental samples

text: Miseq

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINA ACADEMY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: reco1_1_control_1_DNA_digestate.fastq.gz

text: sludge

text: anearobic digestion

text: anearobic digestion

text: China

text: metagenome

text: environmental samples

characteristic: organism

text: environmental samples

text: Miseq

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINA ACADEMY

characteristic: INSDC last update

text: public

text: reco1_1_control_1_RNA_digestate.fastq.gz

characteristic: Submitter Id

text: sludge

characteristic: environment (biome)

text: anearobic digestion

text: anearobic digestion

text: China

text: metagenome

text: environmental samples

text: environmental samples

text: Miseq

characteristic: title

text: wastewater/sludge


text: CHINA ACADEMY

text: public

text: reco1_1_control_2_DNA_digestate.fastq.gz

text: sludge

text: anearobic digestion

characteristic: environment (feature)

text: anearobic digestion

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: environmental samples

text: environmental samples

text: Miseq

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINA ACADEMY

characteristic: INSDC center name

text: public

text: reco1_1_control_2_RNA_digestate.fastq.gz

text: sludge

text: anearobic digestion

text: anearobic digestion

text: China

text: metagenome

text: environmental samples

characteristic: project name

text: environmental samples

text: Miseq

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINA ACADEMY

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: reco1_1_control_3_DNA_digestate.fastq.gz

text: sludge

text: anearobic digestion

text: anearobic digestion

text: China

text: metagenome

text: environmental samples

characteristic: organism

text: environmental samples

text: Miseq

text: wastewater/sludge


text: CHINA ACADEMY

characteristic: INSDC last update

text: public

text: reco1_1_control_3_RNA_digestate.fastq.gz

characteristic: Submitter Id

text: sludge

characteristic: environment (biome)

text: anearobic digestion

characteristic: environment (feature)

text: anearobic digestion

characteristic: environment (material)

text: China

text: metagenome

text: environmental samples

text: environmental samples

text: Miseq

characteristic: title

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:485-2382

text: Macrolide-resistant Environmental isolate

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: water network

text: Legionella pneumophila

text: Legionella pneumophila

characteristic: serogroup


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2383

text: France

text: water network

text: Legionella pneumophila

text: Legionella pneumophila


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2384

text: France

text: water network

text: Legionella pneumophila

text: Legionella pneumophila


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2385

text: France

text: water network

text: Legionella pneumophila

text: Legionella pneumophila


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2386

text: France

text: water network

text: Legionella pneumophila

characteristic: organism

text: Legionella pneumophila


text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2387

characteristic: Submitter Id

text: France

text: water network

text: Legionella pneumophila

text: Legionella pneumophila


text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2388

text: France

text: water network

text: Legionella pneumophila

text: Legionella pneumophila


text: public

text: ena-SAMPLE-TAB-01-03-2022-17:03:02:486-2389

text: France

text: water network

text: Legionella pneumophila

text: Legionella pneumophila


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


text: Center for Synthetic Microbiome

text: public

tag: Namespace:Center for Synthetic Microbiome

characteristic: collection date

text: human stool

text: Stool

characteristic: environment (biome)

text: Stool

characteristic: environment (feature)

text: Stool

characteristic: environment (material)

text: China

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: single amplified genome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

text: pyrosequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Synthetic Microbiome

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human stool in vitro cultured community

characteristic: description

text: In vitro culture

text: In vitro culture

text: In vitro culture

text: China

characteristic: geographic location (country and/or sea)

text: human-gut

text: single amplified genome

text: human gut metagenome

text: human gut metagenome

text: pyrosequencing


name: E-MTAB-11499:Control H37rv infected 0hr Replicate1

text: Institute of Life Sciences, Bhubaneswar

characteristic: INSDC last update

text: public

tag: Namespace:Institute of Life Sciences, Bhubaneswar

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

text: Protocols: THP-1 differentiated macrophages were infected with Mtb(H37Rv strain) and harvested at different time points. RNA were isolated from cell samples from RNeasy Plus Kits (Catalog No 74034) and protocol followed as manufactures instruction. RNAseq library was prepared by TruSeq Stranded Total RNA Library Prep after rRNA depletion from Total RNA

text: infant

characteristic: developmental stage

text: childhood acute monocytic leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mycobacterium tuberculosis

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Control H37rv infected 0hr Replicate1


name: E-MTAB-11499:Control H37rv infected 0hr Replicate2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Life Sciences, Bhubaneswar

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: monocyte

text: human

text: infant

text: childhood acute monocytic leukemia

text: wild type genotype

text: Mycobacterium tuberculosis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Control H37rv infected 0hr Replicate2

characteristic: title


name: E-MTAB-11499:Control H37rv infected 0hr Replicate3

text: Institute of Life Sciences, Bhubaneswar

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: monocyte

text: human

characteristic: description

text: infant

text: childhood acute monocytic leukemia

text: wild type genotype

text: Mycobacterium tuberculosis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Control H37rv infected 0hr Replicate3


name: E-MTAB-11499:Control H37rv infected 24hr Replicate1

text: Institute of Life Sciences, Bhubaneswar

text: public

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

text: infant

characteristic: developmental stage

text: childhood acute monocytic leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mycobacterium tuberculosis

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Control H37rv infected 24hr Replicate1


name: E-MTAB-11499:Control H37rv infected 24hr Replicate2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Life Sciences, Bhubaneswar

text: public

text: ArrayExpress

text: monocyte

text: human

text: infant

text: childhood acute monocytic leukemia

text: wild type genotype

text: Mycobacterium tuberculosis

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Control H37rv infected 24hr Replicate2


name: E-MTAB-11499:Control H37rv infected 24hr Replicate3

characteristic: External Id

text: Institute of Life Sciences, Bhubaneswar

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: monocyte

text: human

text: infant

text: childhood acute monocytic leukemia

text: wild type genotype

text: Mycobacterium tuberculosis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Control H37rv infected 24hr Replicate3

characteristic: title


name: E-MTAB-11499:NCoR1 Knockdown H37rv infected 0hr Replicate1

text: Institute of Life Sciences, Bhubaneswar

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

characteristic: description

text: infant

text: childhood acute monocytic leukemia

text: NCoR1 knockdown

text: Mycobacterium tuberculosis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


name: E-MTAB-11499:NCoR1 Knockdown H37rv infected 0hr Replicate2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Life Sciences, Bhubaneswar

text: public

text: ArrayExpress

text: monocyte

text: human

text: infant

characteristic: developmental stage

text: childhood acute monocytic leukemia

characteristic: disease

text: NCoR1 knockdown

characteristic: genotype

text: Mycobacterium tuberculosis

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


name: E-MTAB-11499:NCoR1 Knockdown H37rv infected 0hr Replicate3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Life Sciences, Bhubaneswar

characteristic: INSDC center name

text: public

text: ArrayExpress

text: monocyte

text: human

text: infant

text: childhood acute monocytic leukemia

text: NCoR1 knockdown

text: Mycobacterium tuberculosis

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


name: E-MTAB-11499:NCoR1 Knockdown H37rv infected 24hr Replicate1

text: Institute of Life Sciences, Bhubaneswar

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: human

text: infant

text: childhood acute monocytic leukemia

text: NCoR1 knockdown

text: Mycobacterium tuberculosis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: title


name: E-MTAB-11499:NCoR1 Knockdown H37rv infected 24hr Replicate2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Life Sciences, Bhubaneswar

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

characteristic: description

text: infant

text: childhood acute monocytic leukemia

text: NCoR1 knockdown

text: Mycobacterium tuberculosis

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


name: E-MTAB-11499:NCoR1 Knockdown H37rv infected 24hr Replicate3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Life Sciences, Bhubaneswar

text: public

text: ArrayExpress

text: monocyte

text: human

text: infant

characteristic: developmental stage

text: childhood acute monocytic leukemia

characteristic: disease

text: NCoR1 knockdown

characteristic: genotype

text: Mycobacterium tuberculosis

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


E-MTAB-11501:Sample 1

text: UNIVERSITY OF SHEFFIELD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11501:Sample 1

tag: Namespace:UNIVERSITY OF SHEFFIELD

text: ArrayExpress

text: Protocols: 1.5 ml of culture was collected and centrifuged (12,000 g, 2 min, 4oC). The resulting supernatant was removed, and cell pellets were immediately frozen by submerging in liquid nitrogen for 45 seconds C. jejuni samples were grown from an overnight starter culture. Cells were harvested by centrifugation and resuspended in 50 ml BTS to an OD600 0.1 and added to 6 well plates (Greiner), 5 ml per well. After growth to mid-log (OD600 =0.6) phase, the T0 timepoint was taken and cells were exposed to 405 nm light with samples taken after 15 and 30 min light exposure (18 mW cm2). Cells were treated with high intensity 405 nm light produced by a Thorlabs’ M405L3 mounted fibre-coupled LED with a nominal wavelength of 405 nm and a bandwidth of ~20 nm at full half width maximum. Power density (J cm-2) was measured using a Thorlabs 5310C thermal power sensor 200 mm away from the light source at the position the sample cuvette is mounted. Cells were exposed to light at mid log phase for the amount of time indicated in the sample list RNA isolation was performed by GENEWIZ rRNA depletion and transcript library preparations were performed by GENEWIZ

text: not applicable

characteristic: isolate

text: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

characteristic: organism

characteristic: replicate

text: Sample 1


E-MTAB-11501:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SHEFFIELD

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11501:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: not applicable

text: Sample 2

characteristic: title


E-MTAB-11501:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 3

text: ArrayExpress

characteristic: broker name

characteristic: description

text: not applicable

text: Sample 3


E-MTAB-11501:Sample 4

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 4

text: ArrayExpress

text: not applicable

text: Sample 4


E-MTAB-11501:Sample 5

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 5

text: ArrayExpress

text: not applicable

text: Sample 5


E-MTAB-11501:Sample 6

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 6

text: ArrayExpress

text: not applicable

text: Sample 6


E-MTAB-11501:Sample 7

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 7

text: ArrayExpress

text: not applicable

text: Sample 7


E-MTAB-11501:Sample 8

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 8

text: ArrayExpress

text: not applicable

text: Sample 8


E-MTAB-11501:Sample 9

text: UNIVERSITY OF SHEFFIELD

text: public

text: E-MTAB-11501:Sample 9

text: ArrayExpress

text: not applicable

text: Sample 9


text: public

tag: Namespace:GWANGJU INSTITUTE OF SCIENCE & TECHNOLOGY

text: gut metagenome

text: gut metagenome

text: Gut microbiom from before and after bariatric surgery


text: GWANGJU INSTITUTE OF SCIENCE & TECHNOLOGY

text: public

text: gut metagenome

text: gut metagenome


text: Hospital Sant Joan de Deu

text: public

tag: Namespace:Hospital Sant Joan de Deu

characteristic: collection date

text: human

characteristic: common name

text: Human

text: nasopharyngeal aspirate

text: Host associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Nasopharyngeal aspirate

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: Homo sapiens

text: F 5'- TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGNCCTACGGGNGGCWGCAG -3' / R 5'- GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGNGACTACHVGGGTATCTAATCC -3'

characteristic: pcr primers

text: COVID-19 NASOPHARYNGEAL MICROBIOTA

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfraction

text: Impact of COVID-19 lockdown on the nasopharyngeal microbiota of children and adults self-confined at home


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Sant Joan de Deu

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Negative control of extraction

text: Host associated

text: Human

text: Nasopharyngeal aspirate

text: Spain

text: human-associated

text: Homo sapiens

characteristic: organism

text: COVID-19 NASOPHARYNGEAL MICROBIOTA

text: Homo sapiens

text: Illumina MiSeq

text: 16S rRNA

characteristic: title


text: Hospital Sant Joan de Deu

text: public

characteristic: collection date

text: human

characteristic: common name

text: Negative control of PCR

characteristic: description

text: Host associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Nasopharyngeal aspirate

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: COVID-19 NASOPHARYNGEAL MICROBIOTA

text: Homo sapiens

text: Illumina MiSeq

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Borstel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NDM Oxford

characteristic: broker name

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 11-3843_lib8277. Borstel. 11-3843_lib8277


text: Borstel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NDM Oxford

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: 11-3847_lib8278. Borstel. 11-3847_lib8278

characteristic: title


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 11-3848_lib8279. Borstel. 11-3848_lib8279


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 11-3856_lib8280. Borstel. 11-3856_lib8280


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 11-3861_lib8281. Borstel. 11-3861_lib8281


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3080_lib8079. Borstel. 12-3080_lib8079


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3312_lib8068. Borstel. 12-3312_lib8068


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3466_lib8050. Borstel. 12-3466_lib8050


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3688_lib8284. Borstel. 12-3688_lib8284


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3775_lib8069. Borstel. 12-3775_lib8069


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3858_lib8282. Borstel. 12-3858_lib8282


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3885_lib8283. Borstel. 12-3885_lib8283


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3895_lib8285. Borstel. 12-3895_lib8285


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-3914_lib8287. Borstel. 12-3914_lib8287


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4004_lib8063. Borstel. 12-4004_lib8063


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4282_lib8289. Borstel. 12-4282_lib8289


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4286_lib8290. Borstel. 12-4286_lib8290


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4287_lib8291. Borstel. 12-4287_lib8291


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4290_lib8292. Borstel. 12-4290_lib8292


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4291_lib8293. Borstel. 12-4291_lib8293


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4368_lib8081. Borstel. 12-4368_lib8081


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4369_lib8042. Borstel. 12-4369_lib8042


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4373_lib8294. Borstel. 12-4373_lib8294


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4481_lib8049. Borstel. 12-4481_lib8049


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4495_lib8043. Borstel. 12-4495_lib8043


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4596_lib8074. Borstel. 12-4596_lib8074


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4597_lib8071. Borstel. 12-4597_lib8071


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4618_lib8073. Borstel. 12-4618_lib8073


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4662_lib8041. Borstel. 12-4662_lib8041


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4663_lib8072. Borstel. 12-4663_lib8072


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4812_lib8040. Borstel. 12-4812_lib8040


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4813_lib8056. Borstel. 12-4813_lib8056


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4891_lib8057. Borstel. 12-4891_lib8057


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4937_lib8054. Borstel. 12-4937_lib8054


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-4943_lib8075. Borstel. 12-4943_lib8075


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5027_lib8039. Borstel. 12-5027_lib8039


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5030_lib8062. Borstel. 12-5030_lib8062


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5107_lib8060. Borstel. 12-5107_lib8060


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5178_lib8058. Borstel. 12-5178_lib8058


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5285_lib8078. Borstel. 12-5285_lib8078


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5360_lib8059. Borstel. 12-5360_lib8059


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5524_lib8052. Borstel. 12-5524_lib8052


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5823_lib8051. Borstel. 12-5823_lib8051


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5827_lib8046. Borstel. 12-5827_lib8046


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-5829_lib8053. Borstel. 12-5829_lib8053


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6081_lib8067. Borstel. 12-6081_lib8067


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6129_lib8064. Borstel. 12-6129_lib8064


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6245_lib7022. Borstel. 12-6245_lib7022


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6361_lib8048. Borstel. 12-6361_lib8048


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6458_lib8066. Borstel. 12-6458_lib8066


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6547_lib8076. Borstel. 12-6547_lib8076


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6660_lib8044. Borstel. 12-6660_lib8044


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6767_lib8065. Borstel. 12-6767_lib8065


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 12-6775_lib7023. Borstel. 12-6775_lib7023


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3222-KC_lib7109. Borstel. 13-3222-KC_lib7109


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3502-NB_lib7110. Borstel. 13-3502-NB_lib7110


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3570-MJM_lib7112. Borstel. 13-3570-MJM_lib7112


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3571_lib7029. Borstel. 13-3571_lib7029


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3573_lib8086. Borstel. 13-3573_lib8086


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3734_lib5068. Borstel. 13-3734_lib5068


text: Borstel

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13-3863-NJ_lib7113. Borstel. 13-3863-NJ_lib7113