E-MTAB-10371_4:Sample 1110

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1110

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1110


E-MTAB-10371_4:Sample 1111

status: PUBLIC

tag: attribute

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1111

tag: Namespace:Department of New Biology, DGIST

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

text: Protocols: Stomachs were prepared by carefully separating the corpus from the forestomach and pylorus. Corpus tissue was divided into 4 pieces of similar size and incubated in 4 ml dissociation solution (45 U/ml Dispase II, Thermo Fisher Scientific; 0.6 mg/ml pancreatin, Sigma; 1x penicillin/streptomycin in DMEM high glucose, HEPES, no phenol red, Thermo Fisher Scientific) at 37 °C with shaking at 270 rpm. After dissociation, the solution becomes cloudy and corpus fragments appear more transparent. All subsequent steps were then performed on ice. To avoid cell loss due to cell adhesion to pipette or tube walls, all pipettes and tubes used for pipetting the cell suspension were pre-incubated with either DMEM or PBS containing FBS. To further disrupt the tissue, the cell suspension, including corpus pieces, was pipetted up and down several times using a 10 ml pipette. The cell suspension without remaining corpus pieces was then transferred to a 15 ml Falcon tube. The corpus pieces and the dissociation tube were then washed twice with 5 ml DMEM + 10% FBS and the wash solution combined with the cell suspension for inactivation of the dissociation reaction. Cells were centrifuged at 300 g for 5 min and resuspended in 1% FBS in PBS. The cell suspension was filtered through a 100 μm cell strainer into a pre-coated 15 ml tube. The tube and filters were washed twice with 1 ml of 1% FBS in PBS and the cell suspension was then centrifuged a second time at 300 g for 5 min. After dissociation, the cell pellet was resuspended in 100 µL of antibody mix (1% FBS; 10 U/mL DNAse, Promega; 1:125 Alexa Fluor® 647-conjugated anti-mouse/human CD324 (E-Cadherin) antibody, BioLegend) and incubated for 1 h on ice. Cells were washed with 3 mL 1% FBS in PBS and filtered once more if clumps could be observed. After centrifugation at 300 g for 5 min the cell pellet was resuspended in 1 mL 1% FBS and 10 U/mL DNAse in PBS for sorting. BD INFLUX systems were used for sorting in the WT Sanger Institute Flow Cytometry Facility. After the viable cells were gated at first, the cell were subject to the second gating to select only singlet cells. Then the third gating was to select E-Cadherin+ epithelial cells by Alexa 647. The fourth gating was performed to select Pgc+ cells by dsRed. Each well of the 384 well plate contained 2.3 ul of lysis buffer with RNAse inhibitor (Ambion) in a 0.2% (v/v) Triton X-100 solution. Parietal cell depletion was performed by DMP-777 administration by oral gavage (5.6 mg per 20 g body weight) Preamplification was performed in a total volume of 27 ul that contained 13.5 ul of HiFi Hotstart ReadyMix (2x; KAPA Biosystems) and 0.1 uM of IS PCR primer (Sigma-Aldrich). After 25 cycles of amplification, samples were cleaned with 80% (v/v) of Ampure beads (Beckman Coulter). Sequencing libraries were prepared using the Nextera XT DNA sample preparation kit (Illumina).

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1111

characteristic: title


E-MTAB-10371_4:Sample 1112

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1112

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1112


E-MTAB-10371_4:Sample 1113

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1113

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

text: OK

text: Sample 1113


E-MTAB-10371_4:Sample 1114

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1114

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1114

characteristic: title


E-MTAB-10371_4:Sample 1115

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1115

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1115


E-MTAB-10371_4:Sample 1116

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1116

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

text: OK

text: Sample 1116


E-MTAB-10371_4:Sample 1117

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1117

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1117

characteristic: title


E-MTAB-10371_4:Sample 1118

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1118

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1118


E-MTAB-10371_4:Sample 1119

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1119

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

text: OK

text: Sample 1119


E-MTAB-10371_4:Sample 1120

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1120

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1120

characteristic: title


E-MTAB-10371_4:Sample 1121

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1121

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1121


E-MTAB-10371_4:Sample 1122

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1122

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1122


E-MTAB-10371_4:Sample 1123

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1123

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1123

characteristic: title


E-MTAB-10371_4:Sample 1124

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1124

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1124


E-MTAB-10371_4:Sample 1125

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1125

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

text: OK

text: Sample 1125


E-MTAB-10371_4:Sample 1126

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1126

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: pass

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1126

characteristic: title


E-MTAB-10371_4:Sample 1127

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1127

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1127


E-MTAB-10371_4:Sample 1128

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1128

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1128


E-MTAB-10371_4:Sample 1129

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1129

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1129

characteristic: title


E-MTAB-10371_4:Sample 1130

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1130

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1130


E-MTAB-10371_4:Sample 1131

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1131

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1131


E-MTAB-10371_4:Sample 1132

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1132

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1132

characteristic: title


E-MTAB-10371_4:Sample 1133

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1133

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1133


E-MTAB-10371_4:Sample 1134

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1134

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1134


E-MTAB-10371_4:Sample 1135

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1135

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1135

characteristic: title


E-MTAB-10371_4:Sample 1136

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1136

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1136


E-MTAB-10371_4:Sample 1137

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1137

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1137


E-MTAB-10371_4:Sample 1138

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1138

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1138

characteristic: title


E-MTAB-10371_4:Sample 1139

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1139

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1139


E-MTAB-10371_4:Sample 1140

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1140

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1140


E-MTAB-10371_4:Sample 1141

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1141

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1141

characteristic: title


E-MTAB-10371_4:Sample 1142

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1142

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1142


E-MTAB-10371_4:Sample 1143

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1143

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1143


E-MTAB-10371_4:Sample 1144

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1144

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1144

characteristic: title


E-MTAB-10371_4:Sample 1145

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1145

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1145


E-MTAB-10371_4:Sample 1146

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1146

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: OK

text: Sample 1146


E-MTAB-10371_4:Sample 1147

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1147

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1147

characteristic: title


E-MTAB-10371_4:Sample 1148

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1148

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: OK

text: Sample 1148


E-MTAB-10371_4:Sample 1149

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1149

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: not OK

text: Sample 1149


E-MTAB-10371_4:Sample 1150

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1150

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

characteristic: sex

text: not OK

characteristic: single cell well quality

characteristic: strain

text: Sample 1150

characteristic: title


E-MTAB-10371_4:Sample 1151

text: Department of New Biology, DGIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10371_4:Sample 1151

characteristic: age

text: ArrayExpress

characteristic: broker name

text: epithelial cell of stomach

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: E-Cadherin-positive; Pgc-positive

text: gastric parietal cell atrophy

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Pgc positive

characteristic: phenotype

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: female

text: not OK

text: Sample 1151


E-MTAB-10371_4:Sample 1152

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of New Biology, DGIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10371_4:Sample 1152

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell of stomach

text: house mouse

text: adult

text: E-Cadherin-positive; Pgc-positive

characteristic: immunophenotype

characteristic: individual

text: gastric parietal cell atrophy

characteristic: injury

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: stomach

text: Pgc positive

text: fail

text: Mus musculus

text: female

text: not OK

text: Sample 1152


text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COLOGNE

text: Germany, Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

text: blood

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:The First Affiliated Hospital, Zheng Zhou University.

text: BALF

characteristic: description

text: metagenome

characteristic: organism

text: metagenome

text: BALF


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The First Affiliated Hospital, Zheng Zhou University.

text: public

text: BALF

text: metagenome

text: metagenome

text: BALF


text: GENOMNIA SRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:403-41

tag: Namespace:GENOMNIA SRL

text: human

characteristic: common name

text: Human endothelial cells derived from iPSc

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 33Q_sample1


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-42

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 33Q_sample2


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-43

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 33Q_sample3


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-44

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 71Q_sample1


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-45

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 71Q_sample2


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-46

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 71Q_sample3


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-47

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 109Q_sample1


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-48

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 109Q_sample2


text: GENOMNIA SRL

text: public

text: ena-SAMPLE-TAB-16-12-2021-16:37:12:404-49

text: human

text: Homo sapiens

text: Homo sapiens

text: Human endothelial cells derived from iPS, 109Q_sample3


text: public

tag: Namespace:Laboratory of Functional Genomics and Bioinformatics Institute of Molecular Genetics of the ASCR, v. v. i.

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: Cells were collected 48 hours after transfection and lysed in RLT buffer. HCT116 cell line was transfected (RNAiMAX) using two different control and ZXDA/B targeting siRNA. RNA was extracted using QIAGEN Rneasy plus kit. Libraries were prepared using NEBNext® Ultra™ II RNA Library Prep Kit.

text: adult

characteristic: developmental stage

text: colon carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Laboratory of Functional Genomics and Bioinformatics Institute of Molecular Genetics of the ASCR, v. v. i.

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: adult

text: colon carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: age

text: ArrayExpress

text: Sertoli cell

characteristic: cell type

text: house mouse

text: Protocols: Dissected testes were decapsulated and processed into a single-cell suspension using a previously described protocol (Bellve et al., 1977). Briefly, seminiferous tubules were submerged in EKRB medium (120.1mM NaCl, 4.8mM KCl, 25.2mM NaHCO3, 1.2mM KH2PO2, 1.2mM MgSO4, 1.3mM CaCl2, 11mM glucose, 1mM L-glutamine, 4.4mM sodium lactate, 6.5mM sodium pyruvate, 20mM HEPES, non-essential amino acid and penicillin-streptomycin) with collagenase (0.5 mg/ml) and incubated for 20 minutes at 32 °C. Tubules were disrupted by gently pipetting up and down, followed by filtration through a 100µm strainer. Cells were sedimented at 300g for 10 minutes and resuspended in fresh EKRB medium. The cell suspension was stained with a commercially available antibody against the follicle-stimulating hormone receptor (FSHR) conjugated with phycoerythrin (Bioss, BS-20658R-PE) for 1 hour. FSHR-positive Sertoli cells were sorted (Influx; BD Biosciences) into the RLT buffer (Qiagen) supplemented with β-mercaptoethanol. Fbxo38 knockout mice were generated in a C57BL/6N background by electroporating the Cas9 protein and specific sgRNAs targeting Fbxo38 into the zygotes. Selected founder was backcrossed for two generations to C57BL/6N mice to obtain homozygous animals. RNA was extracted using RNeasy Micro Kit (Qiagen). Libraries were prepared with Takara SMARTer Stranded Total RNA-Seq Kit v2.

characteristic: description

text: adult

text: wild type genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Sertoli cell

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: FBXO38 -/-

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: A

characteristic: batch

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: The transfected cells were selected with puromycin and sorted to get single-cell clones. For ChIP, growing cells were fixed with 1% formaldehyde for 10 min. The reaction was stopped using 125mM glycine, cells were washed twice with PBS and collected. To generate FBXO38 knockout cell lines, the LentiCRISPR (pXPR_001; Addgene, #49535) containing both hSpCas9 and sgRNAs (targeting the sequences AAGCTGTATGACCGTATGTGTGG and GATGCATGTTTTCCGGTGAATGG) were transfected into the previously subcloned HCT116 cells. The cells were lysed in a sonication buffer (50mM Tris pH 7.5, 140mM NaCl, 1mM EDTA pH 8, 0.1% Triton X-100, 0.1% SDS, protease inhibitor cocktail), incubated for 10 min on ice, centrifuged and the pellets were resuspended in an identical buffer. The subsequent sonication was performed for 10 min to generate a fragment size distribution of 100-800 bp (Covaris ME220 Focused-Ultrasonicator, Peak-Power: 75 W, Duty factor: 15 %, Cycle/Burst 1000, water temperature: 6 °C). The sonicated chromatin was precleared by centrifugation, diluted with an IP buffer (as described above) and immunoprecipitated with the corresponding antibodies (ZXDA/B (Atlas antibodies #HPA043789), CENPA (Cell signaling #2186), CENPB (Santa Cruz #sc-376283), control IgG (Cell Signaling #2729)) overnight at 4 °C, followed by incubation with Dynabeads-Protein G (ThermoFisher Scientific). Precipitated DNA/protein complexes were eluted from stringently washed beads using buffer containing 1% SDS and 100mM NaHCO3. Reverse cross-linking of eluates were performed in presence of 200mM NaCl and RnaseA (ThermoFisher Scientific; 0.15 µg/µl) overnight at 65 °C, followed by one hour incubation with Proteinase K (Santa Cruz;0.3 µg/µl) and subsequent purification of DNA with QIAquick PCR Purification Kit (Qiagen). Sequencing libraries were prepared with NEBNext Ultra II DNA Library Prep Kit for Illumina.

text: adult

text: colon carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: B

text: ArrayExpress

text: human

characteristic: description

text: adult

text: colon carcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: male

characteristic: sex


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: B

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon carcinoma

text: FBXO38 CRISPR/Cas9 knockout

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: A

characteristic: batch

text: ArrayExpress

characteristic: cell line

text: human

text: adult

text: colon carcinoma

text: FBXO38 CRISPR/Cas9 knockout

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: male


ORC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cologne

text: public

text: ORC

tag: Namespace:University of Cologne

text: Culture of Orciraptor agilis strain OrcA03

text: Orciraptor agilis

text: Orciraptor agilis

text: Orciraptor agilis strain OrcA03

characteristic: title


text: University of Cologne

characteristic: INSDC center name

text: public

text: Culture of Mougeotia sp. Strain CCAC 3626

characteristic: description

text: Mougeotia sp. CCAC 3626

characteristic: organism

text: Mougeotia sp. CCAC 3626

text: Mougeotia sp. strain CCAC 3626


text: MARATHON Study Consortium

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:MARATHON Study Consortium

characteristic: collection date

text: Klebsiella pneumoniae ST395

text: Russia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Bronchoalveolar Lavage (BAL)

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MARATHON Study Consortium

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Endotracheal Aspirate (ETA)

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

text: MARATHON Study Consortium

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Peritoneal Fluid

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: External Id

text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Sputum

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


text: MARATHON Study Consortium

characteristic: INSDC center name

text: public

text: Klebsiella pneumoniae ST395

characteristic: description

text: Russia

text: diseased

text: Homo sapiens

text: Blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Urine

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

characteristic: INSDC last update

text: public

characteristic: collection date

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Wound Discharge

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Russia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: Biopsy

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Belarus

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Throat swab

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Belarus

text: diseased

text: Homo sapiens

text: Sputum

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Klebsiella pneumoniae ST395

text: Belarus

text: diseased

text: Homo sapiens

text: Blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

text: MARATHON Study Consortium

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae ST395

text: Belarus

text: diseased

text: Homo sapiens

text: Vaginal swab

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: External Id

text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Belarus

text: diseased

text: Homo sapiens

text: Urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


text: MARATHON Study Consortium

characteristic: INSDC center name

text: public

text: Klebsiella pneumoniae ST395

characteristic: description

text: Russia

text: diseased

text: Homo sapiens

text: Abscess

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Catheter

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

characteristic: INSDC last update

text: public

characteristic: collection date

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Unspecified

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Russia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: Liquor

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Kazakhstan

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Kazakhstan

text: diseased

text: Homo sapiens

text: Catheter

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Bile

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

text: MARATHON Study Consortium

text: public

characteristic: SRA accession

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Abdominal Drainage

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: External Id

text: MARATHON Study Consortium

text: public

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


text: MARATHON Study Consortium

characteristic: INSDC center name

text: public

text: Klebsiella pneumoniae ST395

characteristic: description

text: Russia

text: diseased

text: Homo sapiens

text: Urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: MARATHON Study Consortium

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae ST395

text: Russia

text: diseased

text: Homo sapiens

text: Bronchoalveolar Lavage (BAL)

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


characteristic: INSDC last update

text: public

tag: Namespace:University of Cologne (Institute for Zoology)

text: ArrayExpress

characteristic: broker name

text: Protocols: Algal filaments were collected with a 40 µm strainer (Falcon® 40 µm Cell Strainer; Corning, New York, USA) from a well-grown culture, added to liquid nitrogen in a ceramic mortar, and ground to powder.Nine large cultures of Orciraptor agilis were set up in vented T-175 cell culture flasks (Sarstedt, Nümbrecht, Germany) by adding about 30 ml of an Orciraptor suspension (gliding, aggressive cells from regular cultures) to about 250 ml of freeze-killed, algal material diluted in distilled water (details on dilution above ), and incubated at 21 °C in the dark. One day after inoculation, three cultures with digesting and dividing Orciraptor cells (“digesting-dividing” condition) were processed for extraction of total RNA (details below). Two days after inoculation, the remaining cultures contained gliding, aggressive flagellates. Three of these cultures were directly processed for RNA extraction (“gliding” condition), while the other three cultures were spiked with 250 µl concentrated, freeze-killed Mougeotia filaments. These algae have been ultrasonicated before, to fragment filaments into shorter pieces (for faster sedimentation), and washed two times with distilled water (by centrifugation at 1000 g for 10 min and resuspension). After about 45 min, when almost all Orciraptor cells had started attack on the Mougeotia filaments (“attacking” condition), total RNA was extracted. Mougeotia sp.: Several milliliters of TRIzol Reagent (Thermo Fisher Scientific Inc., Waltham, Massachusetts, USA) were added and mixed with the ground algal material during thawing. The resulting TRIzol extract was transferred in a test tube, mixed for several minutes at room temperature, and subjected to RNA isolation according to the manufacturer’s instructions of the TRIzol Reagent. The isolated RNA was checked for integrity by agarose gel electrophoresis, quantified, and stored frozen in nuclease-free water.Orciraptor agilis: After careful aspiration of most of the culture supernatant, the cells were quickly agitated and filtered onto a 3 µm polycarbonate membrane disc filter (Sterlitech, Auburn, Washington, USA) with a vacuum filtration device. The cell-bearing filter was then put upside down in a 60 mm Petri dish with 3 ml TRIzol Reagent (Thermo Fisher Scientific Inc., Waltham, Massachusetts, USA), and placed on a rocking table. After several minutes of mixing, the filter was removed from the Petri dish and the TRIzol extract stored frozen at -80 °C until further processing. From these samples, RNA was isolated according to the manufacturer’s instructions of the TRIzol Reagent, then treated with the TURBO™ DNase (Thermo Fisher Scientific Inc., Waltham, Massachusetts, USA), checked for integrity by agarose gel electrophoresis, quantified, and stored frozen in nuclease-free water. Strand-specific library preparation (including poly-A-enrichment)

text: Mougeotia sp. culture

characteristic: growth condition

text: Mougeotia sp. CCAC 3626

text: Mougeotia sp. CCAC 3626

characteristic: replicate

text: Mougeotia sp. CCAC 3626


text: University of Cologne (Institute for Zoology)

text: public

text: ArrayExpress

text: digesting

text: Orciraptor agilis

text: Orciraptor agilis

text: Orciraptor agilis


text: public

text: ArrayExpress

text: gliding

text: Orciraptor agilis

text: Orciraptor agilis

text: Orciraptor agilis


text: public

text: ArrayExpress

text: attacking

text: Orciraptor agilis

text: Orciraptor agilis

text: Orciraptor agilis


text: Principal Investigator/ SO 'F'

text: public

tag: Namespace:Principal Investigator/ SO 'F'

text: ArrayExpress

text: U-87 MG

text: parent

characteristic: cohort

text: human

characteristic: common name

text: Protocols: Each sample was collected by scraping the cells from 10cm dishes and the pellet was stored at -20 degree. RNA was extracted by Trizol solubilization and extraction protocol by the manufacturer. Step 1: Depletion of rRNA was done to removes abundant RNA from purified total RNA using the Ribo-Zero Plus rRNA Depletion kit. Step2: This step fragments and primes the depleted RNA using random hexamers for cDNA synthesis. Step3: This step reverse transcribes the cleaved RNA fragments primed with random hexamers into first strand cDNA. The addition of Actinomycin D to the FSA (First Strand Synthesis Act D Mix) prevents spurious DNAdependent synthesis, while allowing RNA-dependent synthesis and improving strand specificity. Step4: This step removes the RNA template and synthesizes a replacement strand to generate double-stranded cDNA. dUTP is incorporated in place of dTTP to quench the second strand during amplification. Magnetic beads separate the double-stranded cDNA from the Second Strand Marking Master Mix. Step5: This step adds one adenine (A) nucleotide to the 3′ends of the blunt fragments to prevent them from ligating to each other during adapter ligation reaction. One corresponding thymine (T) nucleotide on the 3′end of the adapter provides a complementary overhang for ligating the adapter to the fragment. This strategy ensures a low rate of chimera (concatenated template) formation. Step6: This step ligates multiple indexing adapters to the ends of the double-stranded cDNA fragments, which prepares them for hybridization onto a flow cell. Step 7: This step uses PCR to selectively amplify DNA fragments with adapter molecules on both ends. PCR is performed with PPC (PCR Primer Cocktail) that anneals to the ends of the adapters. Refre to: https://support.illumina.com//downloads/truseq-stranded-total-rna-with-ribo-zero-plus-rrna-depletion-ref-guide.html

text: adult

characteristic: developmental stage

text: glioblastoma multiforme

characteristic: disease

text: wild type genotype

characteristic: genotype

text: 0.5kPa brain substitute substrate

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Principal Investigator/ SO 'F'

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: U-87 MG

text: parent

text: human

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: approx 1 GPa plastic surface

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


characteristic: External Id

text: Principal Investigator/ SO 'F'

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: U-87 MG

text: recurrent

text: human

characteristic: description

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: 0.5kPa brain substitute substrate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

characteristic: title


text: Principal Investigator/ SO 'F'

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: U-87 MG

text: recurrent

characteristic: cohort

text: human

characteristic: common name

text: adult

text: glioblastoma multiforme

text: wild type genotype

text: approx 1 GPa plastic surface

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: IDIBELL

text: public

characteristic: collection date

text: Invasive Disease

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: BLOOD

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDIBELL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Invasive Disease

text: Spain

text: diseased

text: Homo sapiens

text: PLEURAL LIQUID

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: IDIBELL

characteristic: INSDC last update

text: public

text: Invasive Disease

characteristic: description

text: Spain

text: diseased

text: Homo sapiens

text: ASCITIC LIQUID

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

text: IDIBELL

text: public

characteristic: collection date

text: Invasive Disease

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: CEREBROSPINAL FLUID

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: IDIBELL

text: public

text: Invasive Disease

text: Spain

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: ARTICULAR LIQUID

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM), Shanghai0, China, 20001.

text: ArrayExpress

characteristic: broker name

text: monocyte

text: human

characteristic: common name

text: Protocols: we deleted a 120-bp region at rs2280381 in the U-937 cell line using CRISPR/Cas9 with two sgRNAs targeted around rs2280381 loci. Plasmids expressing Cas9 and sgRNAs were nucleofected into cells, and cell clones were screened to obtain bi-allelic 120-bp deletion clones. Clones exposed to CRISPR/Cas9 complexes with wildtype genotype were selected as controls. Total RNA was extracted using TRIzol reagent (15596018, Thermo Fisher) 1 μg total RNA was purified to remove rRNA and was used to generate the cDNA libraries using Illumina NEBNext® Ultra™ Directional RNA Library Prep Kit

text: adult

characteristic: developmental stage

text: lymphoma

characteristic: disease

text: rs2280381 region knockout

characteristic: genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM), Shanghai0, China, 20001.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: human

characteristic: description

text: adult

text: lymphoma

text: rs2280381 region knockout

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: monocyte

text: human

text: adult

text: lymphoma

text: wild type genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


E-MTAB-11318:Sample 1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11318:Sample 1

tag: Namespace:TMU Research Center of Cancer Translational Medicine, Taipei Medical University

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Type II myofibers were collected from gastrocnemius muscle from each group of mice. The muscle tissue was directly frozen in liquid nitrogen for storage after collection. The muscle tissue was homogenized in the TriZol reagent, and RNA was precipitated by the isopropanol and ethanol. mRNA libraries were generated using the Illumina TruSeq Stranded mRNA Library Prep Kit (Illumina).

text: adult

text: Rrm2b F/F;HSA-Cre

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: gastrocnemius

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-11318:Sample 2

characteristic: ENA-CHECKLIST

text: TMU Research Center of Cancer Translational Medicine, Taipei Medical University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11318:Sample 2

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: Rrm2b F/F;HSA-Cre

characteristic: genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: gastrocnemius

text: Mus musculus

text: male

text: Sample 2


E-MTAB-11318:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-11318:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: Rrm2b F/F;Pax7-CreERT2

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: gastrocnemius

text: Mus musculus

text: male

text: Sample 3

characteristic: title


E-MTAB-11318:Sample 4

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11318:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: Rrm2b F/F;Pax7-CreERT2

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: gastrocnemius

characteristic: organism part

text: Mus musculus

text: male

text: Sample 4


E-MTAB-11318:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11318:Sample 5

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: gastrocnemius

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 5


E-MTAB-11318:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-11318:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: gastrocnemius

text: Mus musculus

text: male

text: Sample 6


characteristic: External Id

text: CLEMSON UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:CLEMSON UNIVERSITY

characteristic: collection date

text: sorghum

text: USA

characteristic: geographic location (country)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: greenhouse

characteristic: growth condition

text: eukaryote

characteristic: investigation type

text: Sorghum bicolor

characteristic: organism

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Sorghum bicolor

text: Illumina

characteristic: sequencing method

text: Sorghum Association Panel Accession

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: Submitter Id

text: mother

characteristic: condition

text: Poland

characteristic: geographic location (country and/or sea)

text: human metagenome

characteristic: project name

text: human metagenome

text: urine


characteristic: External Id

text: Centrum Medyczne Ksztalcenia Podyplomowego

characteristic: INSDC center name

text: public

text: patient

characteristic: description

text: Poland

text: human metagenome

text: human metagenome

text: urine


text: public

text: mother

text: Poland

text: human metagenome

characteristic: organism

text: human metagenome

text: urine


text: public

text: control

text: Poland

text: human metagenome

text: human metagenome

text: urine


text: public

text: body urothelium

text: Poland

text: human metagenome

text: human metagenome

text: bladder


text: public

text: trigonal urothelium

text: Poland

text: human metagenome

text: human metagenome

text: bladder


text: Maastricht University

text: public

tag: Namespace:Maastricht University

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Colon and jejunum biopsies were collected into tubes containing RNA later, and kept at 4C overnight. Samples were then stored at -80C until analysis. Performed using miRNeasy Mini Kit (Qiagen, The Netherlands), following manufacturer's protocol for Animal Tissue including a DNase treatment. Samples with purified RNA were prepared for sequencing using Lexogen SENSE mRNA- seq protocol and library preparation kit (Lexogen, The Netherlands).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Maastricht University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: jejunum

text: Mus musculus

text: male

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Cedars Sinai Medical Center; F. Widjaja Foundation Inflammatory Bowel & Immunobiology Research Institute

text: gut metagenome

characteristic: organism

text: 16S rRNA from WT 8 weeks old female mice extracted from fecal samples ERC000011

characteristic: sample_description checklist_accession

text: gut metagenome


text: Cedars Sinai Medical Center; F. Widjaja Foundation Inflammatory Bowel & Immunobiology Research Institute

text: public

text: gut metagenome

text: gut metagenome


text: public

text: gut metagenome

text: 16S rRNA from WT 8 weeks old male mice extracted from fecal samples ERC000011

text: gut metagenome


text: public

text: gut metagenome

text: 16S rRNA from BATF3KO 8 weeks old female mice extracted from fecal samples ERC000011

text: gut metagenome


text: public

text: gut metagenome

text: 16S rRNA from BATF3KO 8 weeks old male mice extracted from fecal samples ERC000011

text: gut metagenome


text: UB (Universitat de Barcelona)

text: public

tag: Namespace:UB (Universitat de Barcelona)

text: CNAG-CRG

characteristic: broker name

text: Laura Baldo

text: University of Barcelona

characteristic: collecting institution

text: Lilford's wall lizard

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: sea level

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Aire islet

characteristic: geographic location (region and locality)

text: island

characteristic: habitat

text: Laura Baldo

text: adult

characteristic: lifestage

text: Podarcis lilfordi

text: LIVER

characteristic: original collection date

text: CBP

characteristic: project name

characteristic: sample derived from

text: Podarcis lilfordi

text: FEMALE

text: rPodLil1 liver DNA

characteristic: tolid


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NT

characteristic: LocalityCode

characteristic: SRA accession

tag: Namespace:UPPSALA UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Sediment

characteristic: experimental factor

text: Ukraine

unit: DD

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: freshwater sediment metagenome

characteristic: organism

text: freshwater sediment metagenome

text: Illumina NovaSeq

characteristic: sequencing method

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NT

text: temperate

text: lake

text: soil

text: Soil

text: Ukraine

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina NovaSeq


text: UPPSALA UNIVERSITY

text: public

text: NT

characteristic: LocalityCode

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: lake water

characteristic: environment (material)

text: Water

characteristic: experimental factor

text: Ukraine

characteristic: investigation type

characteristic: miscellaneous environmental package

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina NovaSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MU

text: freshwater

text: lake

text: sediment

text: Sediment

text: Ukraine

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Illumina NovaSeq

characteristic: sequencing method

characteristic: target gene

characteristic: target subfragment

characteristic: title


text: UPPSALA UNIVERSITY

text: public

text: MU

characteristic: LocalityCode

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: temperate

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Soil

text: Ukraine

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina NovaSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MU

text: freshwater

text: lake

text: lake water

text: Water

characteristic: experimental factor

text: Ukraine

characteristic: investigation type

characteristic: miscellaneous environmental package

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina NovaSeq


text: UPPSALA UNIVERSITY

text: public

text: GY

characteristic: LocalityCode

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Sediment

text: Ukraine

text: freshwater sediment metagenome

text: freshwater sediment metagenome

text: Illumina NovaSeq

characteristic: sequencing method

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GY

text: temperate

text: lake

text: soil

text: Soil

text: Ukraine

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina NovaSeq


text: UPPSALA UNIVERSITY

text: public

text: GY

characteristic: LocalityCode

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: lake water

characteristic: environment (material)

text: Water

characteristic: experimental factor

text: Ukraine

characteristic: investigation type

characteristic: miscellaneous environmental package

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina NovaSeq


characteristic: ENA-CHECKLIST

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