characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EBI-EMG

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Solobacterium sp.

text: In this study we report fort the first time the characterization of the fecal microbiome of an ancient autochthonous pig breed that lives in the woods of the Nebrodi and Madonie mountains on the northern coast of the Mediterranean island of Sicily (Italy). Using whole-metagenome shotgun sequencing (WGS) we provide a detailed taxonomic and functional profiling of the microbial community associated with this rare and endangered-maintained pig breed.

characteristic: project name

characteristic: sample derived from

text: uncultured Solobacterium sp.

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13040390_bin.2_metaWRAP_v1.3_MAG


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13040390 of study SRP292297.

characteristic: description

text: Pig digestive system

text: Colon

text: Feces

text: Italy

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

text: pig gut metagenome

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: SRR13040390_bin.3_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EBI-EMG

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

characteristic: metagenomic source

text: Lactobacillus amylovorus

characteristic: project name

characteristic: sample derived from

text: Lactobacillus amylovorus

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13040390_bin.5_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

text: CheckM

characteristic: description

text: Pig digestive system

text: Colon

text: Feces

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: pig gut metagenome

text: pig gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: SRR13040390_bin.7_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: EBI-EMG

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Pig digestive system

characteristic: environment (biome)

text: Colon

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Erysipelotrichaceae bacterium

characteristic: project name

characteristic: sample derived from

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13040390_bin.8_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

text: CheckM

characteristic: description

text: Pig digestive system

text: Colon

text: Feces

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: pig gut metagenome

text: pig gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: SRR13040390_bin.9_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

unit: years

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00360076/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00356494/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00356025/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00359077/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00359087/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00359073/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00358599/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00359085/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00358597/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00359093/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00358602/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00358596/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00358591/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Clare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CE-NVRL-S22IRL00359081/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-S22IRL00358614/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/CN-NVRL-S22IRL00360351/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00358845/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cavan

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CN-NVRL-S22IRL00358241/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cavan

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CN-NVRL-S22IRL00358842/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00360809/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00360803/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00360802/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357066/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357065/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00356605/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357056/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357071/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357072/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00358320/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357197/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357198/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357202/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357089/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-S22IRL00357217/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Carlow

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CW-NVRL-S22IRL00359560/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Carlow

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CW-NVRL-S22IRL00359737/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Carlow

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CW-NVRL-S22IRL00359736/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360165/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00359994/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360114/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360128/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360119/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00359573/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360199/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360194/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360179/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360909/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360173/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360198/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360178/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360146/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00359855/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360172/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360195/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360185/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00359978/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360120/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360779/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360116/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360275/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360107/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360447/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360434/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360791/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360797/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360269/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360438/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360681/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360682/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360182/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00359989/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360215/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360968/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360281/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360270/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360696/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00360699/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00360192/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00359982/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00356689/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00356685/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00356793/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00356796/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00356779/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00356720/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00356128/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00356116/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/D-NVRL-S22IRL00356585/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/D-NVRL-S22IRL00356129/2022

characteristic: virus identifier