characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Polar Biome

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: GSC

text: public

text: [AO] Arctic Ocean (MRGID:1906)

characteristic: Oxygen Sensor

text: Tara Oceans Expedition (2009-2013)

characteristic: Project Name

characteristic: Protocol Label

characteristic: Salinity Sensor

text: Rosette Vertical Sampling System [RVSS]

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Temperature

text: This sample (TARA_B110001448) was collected at station TARA_158 during campaign TARA_20130519Z of the Tara Oceans expedition (2009-2013), using a Rosette Vertical Sampling System [RVSS]. The sampling event (TARA_20130604T0905Z_158_Combined-EVENTS_CAST) occurred at position latitudeN=67.1675 and longitudeE=0.2177, on date/time=2013-06-04T09:05:00, at a depth of 642-660 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(10L-or-15min)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity, metagenomics and/or transcriptomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110001449.

characteristic: description

characteristic: environment (feature) further details

text: marine metagenome

characteristic: protocol description

characteristic: sample material label

text: marine metagenome

text: TARA_20130604T0905Z_158_Combined-EVENTS_CAST_MES_(651m)_SEQ-(10L-or-15min)_W0.22-3_B110001448


status: PUBLIC

unit: mg Chl/m3

tag: attribute

characteristic: Chlorophyll Sensor

text: Tara Oceans Consortium, Coordinators & Tara Oceans Expedition, Participants. Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA. doi:10.1594/PANGAEA.842197 (2015) (https://dx.doi.org/10.1594/PANGAEA.842197)

characteristic: Citation

unit: m

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Polar Biome

characteristic: Environment (Biome)

characteristic: Environment (Feature)

text: water (ENVO:00002006), including particulate matter (ENVO:01000060) such as planktonic material (ENVO:01000063)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

unit: DD

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: [AO] Arctic Ocean (MRGID:1906)

characteristic: Marine Region

unit: µmol/L

characteristic: Nitrate Sensor

unit: µmol/kg

text: Tara Oceans Expedition (2009-2013)

characteristic: SRA accession

unit: practical salinity unit

text: Rosette Vertical Sampling System [RVSS]

text: This version can be used to provide data discovery services

text: SV Tara

characteristic: Submitter Id

unit: ºC

text: This sample (TARA_B110001449) was collected at station TARA_158 during campaign TARA_20130519Z of the Tara Oceans expedition (2009-2013), using a Rosette Vertical Sampling System [RVSS]. The sampling event (TARA_20130604T0905Z_158_Combined-EVENTS_CAST) occurred at position latitudeN=67.1675 and longitudeE=0.2177, on date/time=2013-06-04T09:05:00, at a depth of 642-660 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(10L-or-15min)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity, metagenomics and/or transcriptomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110001448.

text: discrete depth between 400-800 m, within the mesopelagic zone (ENVO:00000213) within the aphotic zone (ENVO:00000210)

text: marine metagenome

characteristic: organism

text: In the size fraction W0.22-3 micrometres, the sample material was pre-filtered on 3-micrometres, using a 142-mm-diameter Millipore polycarbonate membrane (ref:TSTP14250), and concentrated on 0.22-micrometres, using a 142-mm-diameter Millipore polyethersulfone Express Plus membrane filter (ref:GPWP14250). A volume of 10 Litres was filtered and the 0.22-micrometre-pore-size filter was packaged in a sterile Falcon tube (50 mL), treated with the addition of 10 mL of RNA-Later, labelled with a barcode identification sticker and stored on board in a freezer at -20 degree Celsius. Note 1: Latex or nitril gloves were used for this protocol. Note 2: All containers, filter holders and tubing were washed with 0.1% bleach, rinsed twice with fresh water and rinsed again twice with the pre-filtered sample material. All tweezers are kept clean with ethanol. Note 3: A peristaltic pump (Masterflex, EW-77410-10) was used with a flow rate rendering a pressure of ca. 10-15 psi. Note 4: When the filtration rate decreased considerably, filters were replaced. All filters from one filtration were stored in the same sample container. Note 5: The entire process did not exceed 15 minutes. A total of 2 replicates were prepared and sent for later analysis to the Institute of Marine Science (CSIC), Barcelona, Spain.

text: marine metagenome

text: TARA_20130604T0905Z_158_Combined-EVENTS_CAST_MES_(651m)_SEQ-(10L-or-15min)_W0.22-3_B110001449

characteristic: title


characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Polar Biome

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: GSC

text: public

text: [AO] Arctic Ocean (MRGID:1906)

characteristic: Oxygen Sensor

text: Tara Oceans Expedition (2009-2013)

characteristic: Project Name

characteristic: Protocol Label

characteristic: Salinity Sensor

text: Rosette Vertical Sampling System [RVSS]

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Temperature

text: This sample (TARA_B110000878) was collected at station TARA_205 during campaign TARA_20130921Z of the Tara Oceans expedition (2009-2013), using a Rosette Vertical Sampling System [RVSS]. The sampling event (TARA_20131008T1824Z_205_Combined-EVENTS_CAST) occurred at position latitudeN=72.4456 and longitudeE=-71.8814, on date/time=2013-10-08T18:24:00, at a depth of 482-500 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(10L-or-15min)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity, metagenomics and/or transcriptomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110000877.

characteristic: description

characteristic: environment (feature) further details

text: marine metagenome

characteristic: protocol description

characteristic: sample material label

text: marine metagenome

text: TARA_20131008T1824Z_205_Combined-EVENTS_CAST_MES_(491m)_SEQ-(10L-or-15min)_W0.22-3_B110000878


characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Polar Biome

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

characteristic: Further Details

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: [AO] Arctic Ocean (MRGID:1906)

characteristic: Marine Region

characteristic: Nitrate Sensor

text: Tara Oceans Expedition (2009-2013)

characteristic: SRA accession

text: Rosette Vertical Sampling System [RVSS]

text: SV Tara

characteristic: Submitter Id

text: This sample (TARA_B110000493) was collected at station TARA_206 during campaign TARA_20130921Z of the Tara Oceans expedition (2009-2013), using a Rosette Vertical Sampling System [RVSS]. The sampling event (TARA_20131012T1802Z_206_Combined-EVENTS_CAST) occurred at position latitudeN=70.9433 and longitudeE=-53.5127, on date/time=2013-10-12T18:02:00, at a depth of 407-416 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [MES] marine water layer (ENVO:01000295) within the mesopelagic zone (ENVO:00000213). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(10L-or-15min)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity, metagenomics and/or transcriptomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110000494.

text: marine metagenome

characteristic: organism

text: marine metagenome

text: TARA_20131012T1802Z_206_Combined-EVENTS_CAST_MES_(411m)_SEQ-(10L-or-15min)_W0.22-3_B110000493

characteristic: title


characteristic: Chlorophyll Sensor

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Polar Biome

characteristic: Environment (Biome)

characteristic: Environment (Feature)

characteristic: Environment (Material)

text: water

characteristic: Environmental Package

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: GSC

text: public

text: [AO] Arctic Ocean (MRGID:1906)

characteristic: Oxygen Sensor

text: Tara Oceans Expedition (2009-2013)

characteristic: Project Name

characteristic: Protocol Label

characteristic: Salinity Sensor

text: high volume peristaltic pump [HVP-PUMP]

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: SV Tara

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Temperature

text: This sample (TARA_B110000856) was collected at station TARA_208 during campaign TARA_20131020Z of the Tara Oceans expedition (2009-2013), using a high volume peristaltic pump [HVP-PUMP]. The sampling event (TARA_20131020T1034Z_208_EVENT_PUMP) occurred at position latitudeN=69.1136 and longitudeE=-51.5086, on date/time=2013-10-20T10:34:00, at a depth of 3-7 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a [SRF] surface water layer (ENVO:00010504). The sample material was size-fractionated (0.22-3 micrometres) and prepared on board using protocol [SEQ-(10L-or-15min)_W0.22-3] for later detection and identification of biological and molecular entities (nucleotides) by sequencing (SEQ) methods. This sample may be used for example in biodiversity, metagenomics and/or transcriptomics studies of prokaryotes. This sample has replicate sample(s): TARA_B110000857.

characteristic: description

text: discrete depth within the epipelagic zone (ENVO:00000209) at the top of the photic zone (ENVO:00000209), <10 m from a strong peak in chlorophyll fluorescence

characteristic: environment (feature) further details

text: marine metagenome

characteristic: protocol description

characteristic: sample material label

text: marine metagenome

text: TARA_20131020T1034Z_208_EVENT_PUMP_SRF_(5m)_SEQ-(10L-or-15min)_W0.22-3_B110000856


text: 36 days

characteristic: ArrayExpress-Age

characteristic: ArrayExpress-GrowthCondition

text: Whole

characteristic: ArrayExpress-OrganismPart

text: Schistosoma mansoni

characteristic: ArrayExpress-Species

text: 36 days

characteristic: ArrayExpress-TimePoint

characteristic: ArrayExpress-Treatment

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Schistosoma mansoni

characteristic: common name

text: Schistosoma mansoni

characteristic: organism

text: Schistosoma mansoni


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Streptococcus pneumoniae

text: USA

characteristic: country

text: human

characteristic: host scientific name

text: carriage

characteristic: isolate

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

characteristic: strain

characteristic: subject id

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:MPIC (Max-Planck-Institute for Chemistry, Germany)

characteristic: collection date

text: air

characteristic: environment (biome)

text: air

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: air metagenome

characteristic: project name

text: air metagenome

text: HiSeq 2500

characteristic: sequencing method

text: 3436_A_L001_AQ10_Petrochemical_Pollution


text: MPIC (Max-Planck-Institute for Chemistry, Germany)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: air

text: air

text: air

text: Saudi Arabia

text: metagenome

text: air metagenome

characteristic: organism

text: air metagenome

text: HiSeq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: air

characteristic: environment (biome)

text: air

text: air

text: Indian Ocean

text: metagenome

text: air metagenome

text: air metagenome

text: HiSeq 2500

characteristic: title


text: public

text: air

text: air

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Oman

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: air metagenome

text: air metagenome

text: HiSeq 2500


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: air

text: air

text: air

text: Saudi Arabia

text: metagenome

text: air metagenome

characteristic: project name

text: air metagenome

text: HiSeq 2500

characteristic: sequencing method

text: 3436_A_L002_AQ10_Petrochemical_Pollution


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: air

text: air

text: air

text: Barbados

text: metagenome

text: air metagenome

characteristic: organism

text: air metagenome

text: HiSeq 2500


text: public

text: lichens

characteristic: environment (biome)

text: lichens

characteristic: environment (feature)

text: lichens

characteristic: environment (material)

text: Barbados

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: air metagenome

text: air metagenome

text: HiSeq 2500

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: air

text: air

text: air

text: Cyprus

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: air metagenome

text: air metagenome

text: HiSeq 3000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: air

text: air

text: air

text: Cyprus

text: metagenome

text: air metagenome

characteristic: project name

text: air metagenome

text: HiSeq 2500

characteristic: sequencing method


text: public

characteristic: collection date

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Cyprus

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: air metagenome

characteristic: organism

text: air metagenome

text: HiSeq 2500


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: lichen

text: lichen

text: lichen

text: Cyprus

characteristic: geographic location (longitude)

text: metagenome

text: air metagenome

text: air metagenome

text: HiSeq 2500

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: lichen

text: lichen

text: lichen

text: Niger

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: air metagenome

text: air metagenome

text: HiSeq 2500


text: public

characteristic: collection date

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Niger

characteristic: geographic location (country and/or sea)

text: metagenome

text: air metagenome

characteristic: project name

text: air metagenome

text: HiSeq 2500

characteristic: sequencing method


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: air

text: air

text: air

text: Saudi Arabia

characteristic: geographic location (latitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: air metagenome

characteristic: organism

text: air metagenome

text: HiSeq 2500

text: AQABA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: air

text: air

text: air

text: Indian Ocean

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: air metagenome

text: air metagenome

text: HiSeq 2500

text: AQABA

characteristic: title


text: public

characteristic: collection date

text: air

characteristic: environment (biome)

text: air

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Oman

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: air metagenome

characteristic: project name

text: air metagenome

text: HiSeq 2500

characteristic: sequencing method

text: AQABA


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: air

text: air

text: air

text: Barbados

characteristic: geographic location (latitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: air metagenome

text: air metagenome

text: HiSeq 2500

text: BARBADOS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: air

text: air

text: air

text: Saudi Arabia

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: air metagenome

characteristic: organism

text: air metagenome

text: HiSeq 2500

text: BARBADOS


text: public

characteristic: collection date

text: air

characteristic: environment (biome)

text: air

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: Niger

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

characteristic: investigation type

text: air metagenome

text: air metagenome

text: HiSeq 2500

text: CyPRUS

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: air

text: air

text: air

text: Cyprus

text: host-associated

text: metagenome

text: air metagenome

characteristic: project name

text: air metagenome

text: HiSeq 2500

characteristic: sequencing method

text: CyPRUS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: lichens

text: lichens

text: lichens

text: Niger

characteristic: geographic location (latitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: air metagenome

text: air metagenome

text: HiSeq 2500

text: SAHEL


text: public

characteristic: collection date

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Niger

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: air metagenome

characteristic: organism

text: air metagenome

text: HiSeq 2500

text: SAHEL


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute of Physiological Chemistry, University of Ulm

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: pancreatic stellate cell

text: house mouse

characteristic: common name

text: Protocols: Pancreas tissue was collected from the animals sacrificed at the end of the experiment. Isolation of the pancreatic stellate cells (PSCs) was performed by gradient centrifugation using Nycodenz solution. The cells layer was collected and purified by negative selection using CD45 microbeads and MACS LD column. To induce pancreatitis, animals were injected with three episodes of caerulein (50μg/kg six time each episode) per week over two weeks. To activate the cre recombinase, animals received daily tamoxifen treatment for 5 days during the first week. All animals were sacrificed 3 weeks after the first injection episode. The total RNA from cells was extracted with the RNeasy Mini kit (Qiagen) according to the manufacturer's protocol. Library preparation: Random primed cDNA library- Purification of poly-A containing mRNA molecules- mRNA fragmentation- Random primed cDNA synthesis- Adapter ligation and adapter specific PCRamplification

characteristic: description

text: chronic pancreatitis

characteristic: disease

text: Col1a2Cre.ERT tg/+; NEMOwt/wt

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Physiological Chemistry, University of Ulm

text: public

characteristic: Submitter Id

text: ArrayExpress

text: pancreatic stellate cell

text: house mouse

text: autoimmune pancreatitis type 1

text: Col1a2Cre.ERT tg/+; NEMOfl/fl

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pancreas

text: Col1a2 mediated NEMO knockout

text: Mus musculus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: pancreatic stellate cell

text: house mouse

text: chronic pancreatitis

text: Col1a2Cre.ERT tg/+; NEMOwt/wt

text: Mus musculus

text: Mus musculus

text: pancreas

text: wild type phenotype

text: Mus musculus

text: male


text: public

text: ArrayExpress

characteristic: broker name

text: pancreatic stellate cell

text: house mouse

characteristic: common name

characteristic: description

text: autoimmune pancreatitis type 1

characteristic: disease

text: Col1a2Cre.ERT tg/+; NEMOfl/fl

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: Col1a2 mediated NEMO knockout

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: pancreatic stellate cell

text: house mouse

text: chronic pancreatitis

text: Col1a2Cre.ERT tg/+; NEMOwt/wt

text: Mus musculus

text: Mus musculus

text: pancreas

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


E-MTAB-7753:Sample 1-replicate1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7753:Sample 1-replicate1

tag: Namespace:Shandong Provincial Key Laboratory of Synthetic Biology, Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: cell pellets from 50 ml culture were collected by centrifugation at -4 °C and 9,000 rpm (Hitachi CF16RXII, Qingdao, China) for 5 min. Afterwards, pellets were frozen in liquid nitrogen and stored at-80°C. Total RNA was extracted using the mirVana miRNA Isolation Kit (Ambion) following the manufacturer’s protocol. RNA integrity was evaluated using the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). The samples with RNA Integrity Number (RIN) ≥ 7 were subjected to the subsequent analysis. Double stranded cDNA was generated using the SuperScript Double-Stranded cDNA synthesis kit (Invitrogen) according to the manufacturer’s instructions.It was performed by Oebiotech (Shanghai, China) The libraries were constructed using TruSeq Stranded mRNA LTSample Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions. This part of experiment is carried out at Oebiotech (Shanghai, China)

text: exponential phase

characteristic: growth condition

text: Clostridium ljungdahlii DSM 13528

characteristic: organism

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Sample 1-replicate1


E-MTAB-7753:Sample 2-replicate1

text: Shandong Provincial Key Laboratory of Synthetic Biology, Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7753:Sample 2-replicate1

text: ArrayExpress

characteristic: broker name

characteristic: description

text: exponential phase

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Sample 2-replicate1


E-MTAB-7753:Sample 3-replicate2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7753:Sample 3-replicate2

text: ArrayExpress

text: stationary phase

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Sample 3-replicate2


E-MTAB-7753:Sample 4-replicate2

text: public

text: E-MTAB-7753:Sample 4-replicate2

text: ArrayExpress

text: stationary phase

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Clostridium ljungdahlii DSM 13528

text: Sample 4-replicate2


text: public

tag: Namespace:Swedish University of Agricultural Sciences

text: Transcriptome of Brettanomyces naardenensis during aerobic batch cultivation

text: Brettanomyces naardenensis

text: Brettanomyces naardenensis


text: Swedish University of Agricultural Sciences

text: public

text: Brettanomyces naardenensis

text: Brettanomyces naardenensis

text: Transcriptome of Brettanomyces naardenensis


text: CAM

text: public

text: Heliconius butterfly

characteristic: common name

text: Thorax DNA extract

text: Heliconius cydno chioneus x Heliconius melpomene rosina


text: CAM

text: public

text: Heliconius butterfly

text: Thorax DNA extract

text: Heliconius melpomene rosina

text: Heliconius melpomene rosina


text: CAM

text: public

text: Raised on Passiflora biflora painted with P.auriculata extract

text: Pupa

text: Heliconius erato demophoon

text: Heliconius erato demophoon

text: Whole body


text: CAM

text: public

text: Heliconius butterfly

text: Thorax DNA extract

text: Heliconius cydno chioneus

text: Heliconius cydno chioneus


text: JIC

text: public

text: Pure culture grown in vitro

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG002


text: JIC

text: public

text: Genomic DNA extracted from pure mycelial culture grown in vitro.

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG006


text: JIC

text: public

text: DNA isolated from pure culture grown in vitro.

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG032


text: JIC

text: public

text: DNA extracted from pure culture grown in vitro.

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG033


text: JIC

text: public

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG038


text: JIC

text: public

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG039


text: JIC

text: public

text: Genomic DNA extracted from pure culture grown in vitro.

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG059


text: JIC

text: public

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate AG098


text: JIC

text: public

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate PR003


sandrea

text: JIC

text: public

text: sandrea

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Isolate SAndrea


text: JIC

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was extracted from this EMS M2 putant, which showed phenotypic loss of resistance to the Albugo candida isolate Ex1. A Nextera Illumina library was prepared, bulked with other multiplexed samples, capture was performed using the v2 Brassica bait library. HiSeq Illumina sequencing and de-multiplexing was performed by Novogene.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was extracted from this EMS M2 putative mutant, which showed phenotypic loss of resistance to the Albugo candida isolate Ex1. A Nextera Illumina library was prepared, bulked with other multiplexed samples, capture was performed using the v2 Brassica bait library. HiSeq Illumina sequencing and de-multiplexing was performed by Novogene.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was sheared using covaris (microtube) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC. This sample was obtained through collaboration with Marc Nishimura from Jeff Dangl's group.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA from At Col-0 was sheared using covaris (minitubes) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was sheared using covaris (microtube) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was sheared using covaris (microtube) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC. This sample was obtained through collaboration with Eunyoung Chae from Detlef Weigel's group.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was sheared using covaris (minitubes) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was sheared using covaris (minitubes) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC. This sample was obtained through collaboration with Eunyoung Chae from Detlef Weigel's group.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: thale cress

text: Genomic DNA was sheared using covaris (microtube) to ~800 bp, NEBNEXT Ultra DNA prep and barcoding PCR was performed. The library was pooled with 22 others and enriched using the BrRenSeq v1 bait library. Sequencing was performed on MiSeq at TGAC. This sample was obtained through collaboration with Mahmut Tor.

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: JIC

text: public

text: Sample 14713 was isolated from an abalone that did not have clinical or histological evidence of ATM. Large subunit rDNA PCR & sequencing of PCR fragment indicated it is a Haliphthoros sp.

text: Haliphthoros milfordensis

text: Haliphthoros milfordensis


text: JIC

text: public

text: Halioticida noduliformans 15835-3 isolated from abalone with typical clinical and histological signs of ATM

text: Halioticida noduliformans

text: Halioticida noduliformans


text: JIC

text: public

text: Isolate 14678 3 was isolated from a clinical case of abalone tubercle mycosis

text: Halioticida noduliformans

text: Halioticida noduliformans


text: JIC

text: public

text: This organism was isolated from substrate in a tank where an adult abalone contracted abalone tubercle mycosis. We're not sure whether this organism is Halioticida noduliformans. However, it was positive when tested by PCR using the method of Greeff et al.

text: Halioticida noduliformans

text: Halioticida noduliformans


text: JIC

text: public

text: potato

text: Potato was infected with Phytophthora infestans. RNA was isolated from infected plant tissue discs, and used for RNA-seq.

text: Solanum tuberosum

text: Solanum tuberosum


text: JIC

text: public

text: garden four-o'clock

text: Mirabilis jalapa was infected with Phytophthora mirabilis. RNA was isolated from infected plant tissue discs, and used for RNA-seq.

text: Mirabilis jalapa

text: Mirabilis jalapa


text: public

tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: collection date

text: Freshwater metagenome from Lake Zurich, Switzerland; 80 m depth, 03-Apr-2019

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

text: ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-03-12-2019-09:06:06:235-971

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Freshwater metagenome from Lake Thun, Switzerland; 5 m depth, 08-Apr-2019

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Switzerland

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: Freshwater metagenome from Lake Greifensee, Switzerland; 5 m depth, 03-Apr-2019

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Freshwater metagenome from Lake Maggiore, Italy; 5 m depth, 09-Apr-2019

text: freshwater lake

text: large lake

text: fresh water

text: Italy

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Maggiore, Italy; 300 m depth, 09-Apr-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Italy

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Freshwater metagenome from Lake Lugano, Italy; 5 m depth, 02-Apr-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Freshwater metagenome from Lake Lugano, Italy; 50 m depth, 02-Apr-2019

text: freshwater lake

text: large lake

text: fresh water

text: Italy

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Mondsee, Austria; 5 m depth, 02-May-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Austria

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Freshwater metagenome from Lake Mondsee, Austria; 40 m depth, 02-May-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Freshwater metagenome from Lake Attersee, Austria; 5 m depth, 03-May-2019

text: freshwater lake

text: large lake

text: fresh water

text: Austria

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Attersee, Austria; 150 m depth, 03-May-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Austria

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Freshwater metagenome from Lake Traunsee, Austria; 5 m depth, 03-May-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Freshwater metagenome from Lake Traunsee, Austria; 90 m depth, 03-May-2019

text: freshwater lake

text: large lake

text: fresh water

text: Austria

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Medard, Czechia; 5 m depth, 09-Apr-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Freshwater metagenome from Lake Medard, Czechia; 20 m depth, 09-Apr-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Freshwater metagenome from Lake Milada, Czechia; 5 m depth, 16-Apr-2019

text: freshwater lake

text: large lake

text: fresh water

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Milada, Czechia; 15 m depth, 16-Apr-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

characteristic: organism

text: ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-03-12-2019-09:06:06:235-971

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Freshwater metagenome from Lake Most, Czechia; 5 m depth, 30-Apr-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Freshwater metagenome from Lake Most, Czechia; 60 m depth, 30-Apr-2019

text: freshwater lake

text: large lake

text: fresh water

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Medard, Czechia; 5 m depth, 09-Jul-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Freshwater metagenome from Lake Medard, Czechia; 20 m depth, 09-Jul-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Freshwater metagenome from Lake Milada, Czechia; 5 m depth, 22-Jul-2019

text: freshwater lake

text: large lake

text: fresh water

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Freshwater metagenome from Lake Most, Czechia; 50 m depth, 30-Jul-2019

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: large lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Freshwater metagenome from Lake Milada, Czechia; 15 m depth, 22-Jul-2019

text: freshwater lake

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ROTHAMSTED RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ROTHAMSTED RESEARCH

text: beet armyworm

characteristic: common name

text: Spodoptera exigua

text: Spodoptera exigua

text: Pest genomics: Spodoptera exigua genome and annotation


text: ROTHAMSTED RESEARCH

text: public

characteristic: Submitter Id

text: African cotton leafworm

text: Spodoptera littoralis

characteristic: organism

text: Spodoptera littoralis

text: Pest genomics: Spodoptera littoralis genome and annotation

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:University of Copenhagen, Faculty of Health and Medical Sciences

characteristic: collection date

text: WGS of environmental Vibrio cholerae from Lake Tanganyika

characteristic: description

text: Tanzania

text: healthy

characteristic: host health state

text: Oreochromis tanganyicae

characteristic: host scientific name

characteristic: isolate

text: Fish Lake Tamganyika

characteristic: isolation source

text: Vibrio cholerae

text: Vibrio cholerae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Copenhagen, Faculty of Health and Medical Sciences

characteristic: INSDC first public

text: public

text: Tanzania

characteristic: geographic location (country and/or sea)

text: healthy

text: Oreochromis tanganyicae

text: Fish Lake Tamganyika

text: Vibrio cholerae

text: Vibrio cholerae


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Tanzania

text: healthy

text: lake water

text: Water from Lake Tamganyika

text: Vibrio cholerae

text: Vibrio cholerae


text: public

characteristic: Submitter Id

text: Tanzania

text: healthy

text: Lake water

text: Water from Lake Tamganyika

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

characteristic: title


1D Soil Control Csu

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BAYREUTH

characteristic: INSDC center name

text: public

text: 1D Soil Control Csu

tag: Namespace:UNIVERSITY OF BAYREUTH

text: Peatland

text: uncultured microorganism

text: uncultured microorganism

text: H2 Supplementation Carex rostrata Summer


1R Soil Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 1R Soil Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


2D Soil Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 2D Soil Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


2R Soil Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 2R Soil Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


3D Soil Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 3D Soil Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


3R Soil Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 3R Soil Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


7D Soil H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 7D Soil H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


7R Soil H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 7R Soil H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


8D Soil H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 8D Soil H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


8R Soil H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 8R Soil H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


9D Soil H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 9D Soil H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


9R Soil H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 9R Soil H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


10D Root Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 10D Root Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


10R Root Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 10R Root Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


11D Root Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 11D Root Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


11R Root Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 11R Root Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


12D Root Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 12D Root Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


12R Root Control Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 12R Root Control Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


16D Root H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 16D Root H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


16R Root H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 16R Root H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


17D Root H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 17D Root H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


17R Root H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 17R Root H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


18D Root H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 18D Root H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


18R Root H2 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: 18R Root H2 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B1D Soil t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: B1D Soil t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B1R Soil t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: B1R Soil t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B2D Soil t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: B2D Soil t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B2R Soil t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: B2R Soil t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B3D Soil t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: B3D Soil t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B3R Soil t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: B3R Soil t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W1D Root t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: W1D Root t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W1R Root t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: W1R Root t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W2D Root t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: W2D Root t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W2R Root t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: W2R Root t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W3D Root t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: W3D Root t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W3R Root t0 Csu

text: UNIVERSITY OF BAYREUTH

text: public

text: W3R Root t0 Csu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


text: ROTHAMSTED RESEARCH

text: public

text: striped riceborer

characteristic: common name

text: Annotated genome assembly for Chilo suppressalis. Single individual taken for CLR PacBio, Hi-C (Arima kit) and 10X illumina sequencing. Insecticide suseptible. Syngenta received this strain from Aventis in April 2000

characteristic: description

text: Chilo suppressalis

text: Chilo suppressalis

text: Annotated genome assembly of Chilo suppressalis from the Pest Genomics Initiative.


text: MDC BERLIN

text: public

tag: Namespace:MDC BERLIN

text: human

text: Homo sapiens

text: Homo sapiens

text: BCMA CAR T cells_control_1_1


text: MDC BERLIN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: BCMA CAR T cells_EBAG9-modulated _1_2


text: MDC BERLIN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: BCMA CAR T cells_control_2_1


text: MDC BERLIN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: BCMA CAR T cells_EBAG9-modulated_2_2


text: MDC BERLIN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: BCMA CAR T cells_control_3_1


text: MDC BERLIN

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: BCMA CAR T cells_EBAG9-modulated_3_2


1D Root Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 1D Root Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism

text: H2 Supplementation Experiment Molinia caerulea Summer


1R Root Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 1R Root Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


2D Root Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 2D Root Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


2R Root Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 2R Root Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


3D Root Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 3D Root Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


3R Root Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 3R Root Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


4D Root H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 4D Root H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


4R Root H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 4R Root H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


5D Root H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 5D Root H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


5R Root H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 5R Root H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


6D Root H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 6D Root H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


6R Root H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 6R Root H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


7D Soil Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 7D Soil Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


7R Soil Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 7R Soil Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


8D Soil Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 8D Soil Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


8R Soil Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 8R Soil Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


9D Soil Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 9D Soil Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


9R Soil Control Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 9R Soil Control Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


10D Soil H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 10D Soil H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


10R Soil H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 10R Soil H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


11D Soil H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 11D Soil H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


11R Soil H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 11R Soil H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


12D Soil H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 12D Soil H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


12R Soil H2 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: 12R Soil H2 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B1D Soil t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: B1D Soil t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B1R Soil t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: B1R Soil t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B2D Soil t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: B2D Soil t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B2R Soil t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: B2R Soil t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B3D Soil t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: B3D Soil t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


B3R Soil t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: B3R Soil t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W1D Root t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: W1D Root t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W1R Root t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: W1R Root t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W2D Root t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: W2D Root t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W2R Root t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: W2R Root t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W3D Root t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: W3D Root t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


W3R Root t0 Msu

text: UNIVERSITY OF BAYREUTH

text: public

text: W3R Root t0 Msu

text: Peatland

text: uncultured microorganism

text: uncultured microorganism


MtCINC

text: ROTHAMSTED RESEARCH

text: public

text: MtCINC

text: soybean looper

text: Chrysodeixis includens

text: Chrysodeixis includens

text: Chrysodeixis includens Mitchondria


text: ROTHAMSTED RESEARCH

text: public

text: soybean looper

text: Oxford Nanopore MinION reads for the Chrysodeixis includens genome. Unknown sex individual taken for nanopore, 10X Illumina, and multi-individual for Hi-C sequencing (Arima kit). 1988 from South Carolina USA. More recent collections from Athens, Georgia, USA..

text: Chrysodeixis includens

text: Chrysodeixis includens

text: Oxford Nanopore MinION reads for the Chrysodeixis includens genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: soybean looper

text: 10X genomics Chrysodeixis includens data from one individual, nanopore data for same individual is available.

text: Chrysodeixis includens

text: Chrysodeixis includens

text: 10X genomics Chrysodeixis includens


text: ROTHAMSTED RESEARCH

text: public

text: striped riceborer

text: Genome sequencing 10X genomics Illumina sequencing of one individual.

text: Chilo suppressalis

text: Chilo suppressalis

text: Genome sequencing 10X genomics Illumina


text: ROTHAMSTED RESEARCH

text: public

text: African cotton leafworm

text: Spodoptera littoralis 10X genomics Illumina from one individual

text: Spodoptera littoralis

text: Spodoptera littoralis

text: Spodoptera littoralis genome sequencing


text: ROTHAMSTED RESEARCH

text: public

text: beet armyworm

text: Spodoptera exigua 10X genomics Illumina genome sequencing from one individual

text: Spodoptera exigua

text: Spodoptera exigua

text: Spodoptera exigua genome sequencing


text: ROTHAMSTED RESEARCH

text: public

text: African cotton leafworm

text: Spodoptera littoralis 10X genomics Illumina supernova assembly of the mitochondria.

text: Spodoptera littoralis

text: Spodoptera littoralis

text: Spodoptera littoralis mitochondria


text: ROTHAMSTED RESEARCH

text: public

text: striped riceborer

text: Hi-C sequencing from Arima genomics kit of Chilo suppressalis.

text: Chilo suppressalis

text: Chilo suppressalis

text: Chilo suppressalis genome sequencing using Hi-C


text: ROTHAMSTED RESEARCH

text: public

text: beet armyworm

text: Spodoptera exigua genome sequencing project using 10X genomics Illumina and PacBio.

text: Spodoptera exigua

text: Spodoptera exigua

text: Spodoptera exigua Mitochondria


text: ROTHAMSTED RESEARCH

text: public

text: soybean looper

text: Annotated genome assembly of Chrysodeixis includens. Nanopore and 10X Illumina data from the same individual used by MaSuRCA with Hi-C data to scaffold to chromosome level. Freebayes route used to correct the genome. Suggest to improve would be to reassemble using corrected nanopore reads and try error correcting using low coverage HiFi data from another individual. Initial test looked promising to improve repeat representation due to nanopore errors and collapsing in these regions. Maker annotation pipeline used with both transcriptome transfer and de novo gene prediction as inputs to Evigene to pick best gene models. Curation of P450, ABC, UGT, IRAC gene models where RNA-seq evidence was present. Unknown sex individual taken for nanopore, 10X Illumina, and multi-individual for Hi-C sequencing (Arima kit). 1988 from South Carolina USA. More recent collections from Athens, Georgia, USA.

text: Chrysodeixis includens

text: Chrysodeixis includens

text: Annotated genome assembly of Chrysodeixis includens from the Pest Genomics Initiative.


characteristic: GISAID Accession ID

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

tag: Namespace:ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specific multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: ReCoDID COVID-19 pilot study

characteristic: project name

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: sample derived from

text: Dutch COVID-19 response sample sequencing

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Rotterdam

characteristic: geographic location (region and locality)

text: Human

text: Homo sapiens

text: not provided

text: restricted access

text: hCoV-19/Netherlands/Rotterdam_1363790/2020

characteristic: organism

text: ReCoDID COVID-19 pilot study

characteristic: title


characteristic: GISAID Accession ID

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: ZuidHolland

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: ReCoDID COVID-19 pilot study


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Flevoland

text: Human

text: Homo sapiens

text: not provided

text: restricted access

text: ReCoDID COVID-19 pilot study

characteristic: project name

characteristic: sample capture status

characteristic: sample derived from


characteristic: GISAID Accession ID

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Drente

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

characteristic: organism

text: ReCoDID COVID-19 pilot study

characteristic: title


text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: subject id


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF HELSINKI

characteristic: collection date

text: RNA from 20 wild plants collected in Eastern zone of Tanzania.

characteristic: description

text: Yes

characteristic: environmental sample

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Eastern zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool JDH-1


text: UNIVERSITY OF HELSINKI

text: public

text: RNA from 16 wild plants collected in Northern zone of Tanzania.

text: Yes

text: Tanzania

text: Northern zone

characteristic: geographic location (region and locality)

text: Phaseolus vulgaris

characteristic: organism

text: Phaseolus vulgaris

text: siRNA sample pool JDH-2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

text: RNA from 10 wild plants collected in Southern highlands zone of Tanzania.

text: Yes

text: Tanzania

text: Southern Highlands zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool JDH-3


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: RNA from 19 wild plants collected in Southern highlands zone of Tanzania.

text: Yes

text: Tanzania

text: Southern Highlands zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool JDH-4


text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Yes

text: Tanzania

text: Eastern zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool JDH-5


text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RNA from 24 wild plants collected in Northern zone of Tanzania.

text: Tanzania

text: Northern zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool JDH-6


text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

text: RNA from 30 wild plants collected in Lake zone of Tanzania.

text: Yes

text: Tanzania

text: Lake zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool HXH-16


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: RNA from five wild plants (three plants of Bolusafra bituminosa Kuntze and two plants of Ocimum basilicum L.) that caused symptoms on common bean plants.

text: Yes

text: Tanzania

text: Eastern zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool aIVN-1


text: UNIVERSITY OF HELSINKI

text: public

characteristic: collection date

text: RNA from a common bean plant that developed severe symptoms after inoculation with sap from Ocimum basilicum.

text: No

text: Tanzania

text: Eastern zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool AINV-2


text: UNIVERSITY OF HELSINKI

text: public

text: RNA from four common bean plants that developed mild viral disease symptoms after inoculation with wild plants.

characteristic: description

text: No

text: Tanzania

text: Eastern zone

text: Phaseolus vulgaris

text: Phaseolus vulgaris

text: siRNA sample pool AIVN-3


CFBP 2533

text: public

text: CFBP 2533

tag: Namespace:Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

text: W.J. Kamp

characteristic: collected by

characteristic: culture collection

text: New Zealand

text: Pelargonium peltatum

characteristic: host scientific name

text: Kemp 41

characteristic: isolate

text: Xanthomonas hortorum pv. pelargonii

text: Xanthomonas hortorum pv. pelargonii

text: CFBP 2533

characteristic: strain

text: Xanthomonas hortorum pv. pelargonii CFBP 2533

text: pathotype strain of Xanthomonas hortorum pv. pelargonii


CFBP 7900

characteristic: ENA-CHECKLIST

text: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

text: public

text: CFBP 7900

text: F. Crowe

text: USA

characteristic: geographic location (country and/or sea)

text: Oregon, Madras

characteristic: geographic location (region and locality)

text: Daucus carota L.

text: Xanthomonas hortorum pv. carotae

characteristic: organism

text: Xanthomonas hortorum pv. carotae

text: CFBP 7900

text: Xanthomonas hortorum pv. carotae CFBP 7900

characteristic: title

text: pathotype strain of Xanthomonas hortorum pv. carotae


NCPPB 940

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: NCPPB 940

text: J. Niederhauser

text: USA

text: New York, Ithaca

text: Taraxacum kok-saghyz

text: Xanthomonas hortorum pv. taraxaci

text: Xanthomonas hortorum pv. taraxaci

text: NCPPB 940

text: Xanthomonas hortorum pv. taraxaci NCPPB 940

text: pathotype strain of Xanthomonas hortorum pv. taraxaci


text: Maynooth University

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Maynooth University

characteristic: Submitter Id

characteristic: collection date

text: chicken

characteristic: common name

text: chicken

characteristic: environment (biome)

text: gastrointestinal tract

characteristic: environment (feature)

text: caecum

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Gallus gallus

text: Plasmid Sequencing

characteristic: project name

text: Gallus gallus

text: MinION

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HANYANG UNIVERSITY

characteristic: INSDC first public

text: public

tag: Namespace:HANYANG UNIVERSITY

text: Swine

characteristic: host

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Illumina

text: E. coli WGS

characteristic: title


text: HANYANG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cattle

text: Escherichia coli

text: Escherichia coli

text: Illumina

text: E. coli WGS


text: HANYANG UNIVERSITY

text: public

text: Gallus gallus

text: Escherichia coli

text: Escherichia coli

text: Illumina

text: E. coli WGS


text: HANYANG UNIVERSITY

text: public

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Illumina

text: E. coli WGS


text: Mouse

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Human

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: INRA DE TOURS

text: public

tag: Namespace:INRA DE TOURS

characteristic: collection date

text: chicken

text: In this study we measured the the impact of a 4-bacteria probiotic mix, inoculated just after hatching, on the outcome of a Salmonella experimental infection performed 7 days later. This impact has been assessed at several levels including (1) the patterns of immune genes experssion (2) the gut microbiota composition, characterized using a 16S metabarcoding approach.

characteristic: description

text: temperate

characteristic: environment (biome)

text: intestine

characteristic: environment (feature)

text: feces and organ

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Gallus gallus

text: MoMir-PPC

characteristic: project name

text: Gallus gallus

text: Illumina

text: Impact of a 4-bacteria probiotic mix against Salmonella colonization: immune response and gut microbiota composition


18SMockCommunity 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Virginia Commonwealth University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 18SMockCommunity 2

text: pig

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: DNA extracted from positive control

characteristic: title


text: Virginia Commonwealth University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: DNA extracted from negative control


text: Virginia Commonwealth University

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: DNA extracted from mud samples near pig bones


text: Virginia Commonwealth University

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: DNA extracted from pig bones


text: Virginia Commonwealth University

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: DNA extracted from water samples near pig bones


text: Virginia Commonwealth University

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: DNA extracted from positive control


18SMockCommunity 1

text: Virginia Commonwealth University

text: public

text: 18SMockCommunity 1

text: pig

text: Sus scrofa

text: Sus scrofa

text: DNA extracted from positive control


text: male

characteristic: ArrayExpress-SEX

text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

text: Male

characteristic: GENDER

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus


text: female

text: Anopheles funestus

text: Female

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus


text: male

text: Anopheles gambiae

text: Male

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: female

text: Anopheles maculipalpis

text: Female

text: SC

text: public

text: Anopheles maculipalpis

text: Anopheles maculipalpis

text: Anopheles maculipalpis


text: female

text: Anopheles bellator

text: Female

text: SC

text: public

text: Anopheles bellator

text: Anopheles bellator

text: Anopheles bellator


text: male

text: Anopheles darlingi

text: Male

text: SC

text: public

text: Anopheles darlingi

text: Anopheles darlingi

text: Anopheles darlingi


text: female

text: Anopheles darlingi

text: Female

text: SC

text: public

text: Anopheles darlingi

text: Anopheles darlingi

text: Anopheles darlingi


text: not applicable

characteristic: ArrayExpress-PHENOTYPE

text: not applicable

text: gut metagenome

text: Not Applicable

text: SC

text: public

text: not applicable

characteristic: PHENOTYPE

text: gut metagenome

text: gut metagenome

text: gut metagenome


text: Schistosoma mattheei

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Schistosoma mattheei

text: Schistosoma mattheei

text: Schistosoma mattheei

text: Schistosoma mattheei


text: Schistosoma rodhaini

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Schistosoma rodhaini

text: Schistosoma rodhaini

text: Schistosoma rodhaini

text: Schistosoma rodhaini


text: Schistosoma margrebowiei

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Schistosoma margrebowiei

text: Schistosoma margrebowiei

text: Schistosoma margrebowiei

text: Schistosoma margrebowiei


text: Schistosoma curassoni

text: SC

characteristic: INSDC last update

text: public

text: Schistosoma curassoni

text: Schistosoma curassoni

characteristic: organism

text: Schistosoma curassoni

text: Schistosoma curassoni


text: Dicrocoelium dendriticum

text: SC

text: public

characteristic: INSDC status

text: Dicrocoelium dendriticum

text: Dicrocoelium dendriticum

text: Dicrocoelium dendriticum

text: Dicrocoelium dendriticum

characteristic: title


text: Schistosoma haematobium

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Schistosoma haematobium

text: Schistosoma haematobium

text: Schistosoma haematobium

text: Schistosoma haematobium


text: Schistosoma guineensis

text: SC

text: public

text: Schistosoma guineensis

characteristic: common name

text: Schistosoma guineensis

text: Schistosoma guineensis

text: Schistosoma guineensis


text: Schistosoma spindale

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Schistosoma spindale

text: Schistosoma spindale

text: Schistosoma spindale

text: Schistosoma spindale


text: UNIVERSITY OF CALIFORNIA AT IRVINE

text: public

tag: Namespace:UNIVERSITY OF CALIFORNIA AT IRVINE

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: wastewater metagenome

text: influent

characteristic: sewage type


E-MTAB-9289:Sample 1

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9289:Sample 1

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: 3 tumor samples and paired normal samples of cervical adenocarcinoma were collected at ACTREC-TMC DNA was extracted from tumor tissue and blood normals using qiagen tissue and blood extraction kit the genomic DNA was fragmented by Covaris and fragments of 350bp were selected and A tailing was performed. Adapters were then added to the ends of DNA and amplified using ligation mediated PCR approach which was further subjected to single end separation and cyclization. DNA Nanoballs were produced by rolling circle amplification

characteristic: description

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

characteristic: disease

text: somatic genotype

characteristic: genotype

text: donor 1

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-9289:Sample 2

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9289:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: germline genotype

text: donor 1

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 2

characteristic: title


E-MTAB-9289:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9289:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: cervical adenocarcinoma

text: germline genotype

text: donor 2

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-9289:Sample 4

text: ACTREC

text: public

text: E-MTAB-9289:Sample 4

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: cervical adenocarcinoma

characteristic: disease

text: somatic genotype

characteristic: genotype

text: donor 2

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 4


E-MTAB-9289:Sample 5

text: ACTREC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9289:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: cervical adenocarcinoma

text: somatic genotype

text: donor 3

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: Homo sapiens

text: female

text: Sample 5


E-MTAB-9289:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC

text: public

text: E-MTAB-9289:Sample 6

characteristic: age

text: ArrayExpress

text: human

text: adult

text: cervical adenocarcinoma

text: germline genotype

text: donor 3

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 6

characteristic: title


text: public

tag: Namespace:GFZ German Research Centre for Geosciences

characteristic: collection date

text: DNA extract from soil samples associated with landslides in the Southern Alps of New Zealand

characteristic: description

text: temperate soil biome

characteristic: environment (biome)

text: landslide soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Alps of New Zealand

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: Primary succession of soil microbial communities in landslide chronosequence in the Southern Alps of New Zealand

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: common name

text: temperate soil biome

text: landslide soil

text: soil

text: New Zealand

text: Southern Alps of New Zealand

text: mimarks-survey

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rRNA

characteristic: title


text: public

tag: Namespace:Department of Ophthalmology, Inselspital

text: human

text: control

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: stool sample


text: Department of Ophthalmology, Inselspital

text: public

text: human

text: control

text: Homo sapiens

text: Homo sapiens

text: stool sample


text: public

text: human

text: patient

text: Homo sapiens

text: Homo sapiens

text: stool sample


text: ANIMAL AND PLANT HEALTH AGENCY

text: public

tag: Namespace:ANIMAL AND PLANT HEALTH AGENCY

text: UK livestock

text: Escherichia coli

text: Escherichia coli