characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Remedios2018_28_st222_070818_1200

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (53liter)

text: CGCTCATT-GTCAGTAC

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Remedios2018_30_st222_070818_1600

text: GATCGGAAGAGCACACGTCTGAACTCCAGTCAC[i7]ATCTCGTATGCCGTCTTCTGCTTG / AATGATACGGCGACCACCGAGATCTACAC[i5]ACACTCTTTCCCTACACGACGCTCTTCCGATCT

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (185liter)

characteristic: isolation source

text: GAGATTCC-AGGCTATA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

text: water sample filtered on 20micrometers polycarbonate filter

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (380liter)

text: GAGATTCC-GCCTCTAT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Remedios2018_43_st222_110718_1400

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (187liter)

characteristic: isolation source

text: GAGATTCC-AGGATAGG

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Remedios2018_45_st222_110718_1800

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (287liter)

text: GAGATTCC-TCAGAGCC

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Remedios2018_47_st222_110718_2200

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (287liter)

characteristic: isolation source

text: GAGATTCC-CTTCGCCT

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Remedios2018_49_st222_120718_0400

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (487liter)

text: GAGATTCC-TAAGATTA

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Remedios2018_50_st222_130718_1200

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (486liter)

characteristic: isolation source

text: GAGATTCC-ACGTCCTG

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Remedios2018_51_st222_150718_1930

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (286liter)

text: GAGATTCC-GTCAGTAC

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_azti 1_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_azti 1_2019

text: GATCGGAAGAGCACACGTCTGAACTCCAGTCAC[i]ATCTCGTATGCCGTCTTCTGCTTG/AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Basque Country Coast

text: metatranscriptome

characteristic: investigation type

text: sea water (15liter)

characteristic: isolation source

text: GTGGCC

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: azti 1_2019

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_azti 4_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_azti 4_2019

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

text: Basque Country Coast

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (5.3liter)

text: GTTTCG

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: azti 4_2019

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_azti 5_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_azti 5_2019

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Basque Country Coast

text: metatranscriptome

characteristic: investigation type

text: sea water (14liter)

characteristic: isolation source

text: CGTACG

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: azti 5_2019

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_azti 6_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_azti 6_2019

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

text: Basque Country Coast

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (5.55liter)

text: GAGTGG

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: azti 6_2019

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_azti 7_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_azti 7_2019

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Basque Country Coast

text: metatranscriptome

characteristic: investigation type

text: sea water (14liter)

characteristic: isolation source

text: ACTGAT

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: azti 7_2019

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_Arcachon 1_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Arcachon 1_2019

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: enclosed bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arcachon Bay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (8liter)

text: ATTCCT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: Arcachon 1_2019

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_Arcachon 2_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Arcachon 2_2019

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: enclosed bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Arcachon Bay

text: metatranscriptome

characteristic: investigation type

text: sea water (10liter)

characteristic: isolation source

text: ATCACG

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: Arcachon 2_2019

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_Arcachon 3_2019

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Arcachon 3_2019

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: enclosed bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Arcachon Bay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (10liter)

text: CGATGT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: Arcachon 3_2019

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_pelgas X05_2019_030519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_pelgas X05_2019_030519

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (187liter)

characteristic: isolation source

text: TGACCA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: pelgas X05_2019_030519

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_pelgas X10_2019_060519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_pelgas X10_2019_060519

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Bay of Biscay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (420liter)

text: GCCAAT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: pelgas X10_2019_060519

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_pelgas X02_2019_020519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_pelgas X02_2019_020519

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (171liter)

characteristic: isolation source

text: TAGCTT

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: pelgas X02_2019_020519

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_pelgas X14_2019_070519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_pelgas X14_2019_070519

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Bay of Biscay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (356liter)

text: CTTGTA

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: pelgas X14_2019_070519

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_pelgas X20_2019_150519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_pelgas X20_2019_150519

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (408liter)

characteristic: isolation source

text: AGTCAA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: pelgas X20_2019_150519

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_pelgas X21_2019_150519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_pelgas X21_2019_150519

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Bay of Biscay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (327liter)

text: AGTTCC

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: pelgas X21_2019_150519

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_pelgas X24_2019_220519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_pelgas X24_2019_220519

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (227liter)

characteristic: isolation source

text: ATGTCA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

text: pelgas X24_2019_220519

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


sample_pelgas X27_2019_230519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_pelgas X27_2019_230519

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Bay of Biscay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (360liter)

text: CCGTCC

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: pelgas X27_2019_230519

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


sample_pelgas X28_2019_240519

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_pelgas X28_2019_240519

text: not provided

characteristic: alkanility

text: not provided

characteristic: barometric pressure

text: SeBiMER

text: not provided

characteristic: carbon dioxyde

text: not provided

characteristic: chemical administration

text: seawater metagenome

text: not provided

characteristic: conductivity

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: not provided

characteristic: fluorescence

text: France

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: not provided

characteristic: humidity

text: metatranscriptome

characteristic: investigation type

text: sea water (276liter)

characteristic: isolation source

text: not provided

characteristic: light intensity

text: GTCCGC

characteristic: multiplex identifiers

text: not provided

characteristic: nitrate

text: not provided

characteristic: observed biotic relationship

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

text: not provided

characteristic: perturbation

text: not provided

characteristic: ph

text: not provided

characteristic: phosphate

text: not provided

characteristic: pollutants

text: not provided

characteristic: pressure

characteristic: project name

text: not provided

characteristic: relationship to oxygen

text: not provided

characteristic: salinity

characteristic: sample description

text: pelgas X28_2019_240519

characteristic: sample name

text: not provided

characteristic: sample salinity

text: not provided

characteristic: sample temperature

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not provided

characteristic: sodium

text: not provided

characteristic: solar irradiance

text: not applicable

text: not applicable

text: not provided

text: not provided

text: phytoplankton community

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Division of Genetics and Genomics, Institute for Molecular Bioscience, University of Queensland

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: The Medulloblastoma PDOX mouse model Med-1712FH used in this study was generated in the Olson laboratory (Fred Hutchinson Cancer Research Center, Seattle) using paediatric patient tumour tissue obtained from Seattle Children’s Hospital with approval from the Institutional Review Board. This model is publicly available from https://research.fredhutch.org/olson/en/btrl.html. Med-1712FH tissue was derived from a 4.9–year old patient and classified as a SHH-MB, characterised by desmoplastic/ nodular morphology. The PDOX line was generated by implanting the tumour cells in the cerebellum of immunocompromised NSG mice within hours of surgical removal from the patient and propagating them from mouse to mouse exclusively without in vitro passaging as previously described 29. Xenografted tumours were subjected to genomic analysis and compared to the primary tumour from which they originated. Palbociclib hydrochloride (Pfizer) was used for all treatment samples in this study. Palbociclib was dissolved in 50 mmol/L sodium lactate, pH 4 and administered orally daily at 100mg/kg for a total of seven days before being collected for Visium Spatial gene Expression. This timepoint corresponds to early treatment where we first see visible signs of drug efficacy (data not shown) therefore correlating to potential changes to intratumoural heterogeneity at this point. For all untreated tumour-bearing mice, euthanasia was performed prior to the end of the study if mice demonstrated signs of tumour-related morbidity or lost more than 20% body weight loss. Tissue sections were stained in Mayer’s hematoxylin (Dako) for five minutes and eosin (Sigma) for two minutes. Imaging was performed on a Zeiss Axio Scan Z1 slide scanner. Brain samples were embedded in the optimal cutting temperature compound (OCT) immediately following the dissection. OCT-covered brain specimens were frozen by dipping into chilled isopentane solution. OCT-embedded tissue blocks were cryosectioned at 8μm thickness. To generate orthotopic xenografts, NSG mice were anesthetized and a small incision made in the skin to expose the skull. A handheld 0.7 millimetre microdrill was used to create a hole in the calvarium above the right cerebellar hemisphere, two mm lateral (right) to the sagittal suture and two mm posterior of the lambdoid suture. Tumour tissue from symptomatic donor mice was dissociated in serum-free Dulbecco’s Modified Eagle’s Medium (DMEM) using a 21G needle. The cells were filtered, centrifuged, and resuspended in DMEM at a concentration of 50,000 cells/ul. Two microlitres of the cell suspension (100,000 cells) was injected into the brain parenchyma approximately two millimetres under the dura. SurgiFoam was inserted into the burr hole site to mitigate leakage and the incision was closed with surgical staples. Three-four sections were stored at -80OC for RNA extraction using the QIAGEN RNeasy micro kit (#74004). The yield was first measured by Qubit RNA HS assay kit (#Q32852) and quality assessed using an Agilent 2100 Bioanalyzer with RNA 6000 Pico assay (#5067-1513). The RNA integrity number (RIN) of all samples was approximately 9. Prior to preparing libraries for Visium, morphology and RNA quality was assessed for each sample (Figure S1), and sample-specific tissue permeabilisation optimisation was performed according to the Visium Spatial Tissue Optimisation User Guide Rev B (10x Genomics, #CG000238). Tissue optimisation aims to maintain the balance between capture efficiency and mRNA diffusion. This process is especially vital for tumour tissue where there are regions of densely packed nuclei which are much more difficult to permeabilise. Also, tissue parts from human cancer cells or from the host mouse brain have different permeabilization efficiencies. To address this, the thickness of the sections was adjusted in addition to the tissue permeabilisation time. Ultimately, 8μm was found as the optimal sectioning thickness work for both region types. Briefly, sequential cryosectioned frozen tissue sections were placed inside each of 8 Capture Areas on a Visium Tissue Optimisation Slide (#3000394), fixed in pre-chilled methanol at -20ºC for 30 minutes, stained in Mayer’s hematoxylin (Dako) for 5 minutes and eosin (Sigma) for 2 minutes. Imaging was performed on a Zeiss Axio Scan Z1 slide scanner. Tissue in the 8 arrays was then permeabilised over a range of time points (1 to 70 minutes) to allow cellular RNA to hybridise directly to the oligo-dT nucleotides printed on the slide (Supp. Fig. 1). The captured RNA was reverse transcribed, incorporating fluorescently labelled nucleotides to generate fluorescently labelled complementary DNA (cDNA). The fluorescent oligonucleotide-bound cDNA was visualised on a Leica DMi8 inverted widefield microscope. The H&E and fluorescent images were then assessed to select an ideal permeabilization time that generated the brightest and most distinct signal, correlating to morphological features of the tissue. The optimised 8-minute permeabilisation time point was then used to generate ST libraries from the MB PDX tissues on the Visium Gene Expression Slide. Visium Gene Expression Slides (#2000233) contain four capture arrays with oligonucleotides for RNA capture, spatially distinguished by approximately 5000 uniquely barcoded ‘spots’ (Supp. Fig. 1). These barcoded oligonucleotides also contain Unique Molecular Identifiers (UMIs) to allow tracing of single mRNA transcripts per spot. Following Tissue Optimisation, 8μm MB PDX tissues were sectioned onto a Visium Gene Expression Slide and sequencing libraries were prepared according to the Visium Spatial Gene Expression User Guide Rev C (10x Genomics, #CG000239). Amplification of cDNA was performed for 17 cycles and final indexed samples were amplified for 12 cycles.

characteristic: description

text: medulloblastoma

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

characteristic: title

text: human cells grafted to mouse brain

characteristic: xenograft


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Genetics and Genomics, Institute for Molecular Bioscience, University of Queensland

text: public

text: ArrayExpress

text: human

text: medulloblastoma

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: human cells grafted to mouse brain


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Department of Molecular Genetics, University of Toronto; Genetics and Genome Biology, SickKids Research Institute

text: ArrayExpress

text: subordinate

characteristic: colony hierarchy position

text: naked mole-rat

text: Protocols: Subordinate male (wild-type) naked mole-rat between 5 years of age were anesthetized with isoflurane and rapidly decapitated. One gonad was removed and flash frozen in isopentane on dry ice. Tissue for DNA extraction was homogenized in cell lysis buffer [10mM TRIS(pH8.0), 25mM EDTA, 100mM NaCl, 0.5% SDS, RNase A] and digested with proteinase K overnight at 37C. The resulting lysate was extracted twice with TRIS saturated phenol (pH8.0) followed by a single extraction with chloroform. DNA was precipitated from solution by adding 1/10th volume 3M Sodium Acetate and 2.5 volumes of 95% ethanol followed by gentle inversion. Precipitated DNA was spooled onto a glass rod and washed with excess 70% ethanol and allowed to partially air dry before being resuspended in an appropriate volume of EB [10mM TRIS (pH8.0)] DNA for library preparation was sheared to an average size of 10kb on a Covaris g-TUBE. Libraries were prepared with the Oxford Nanopore SQK-LSK109 library prep by ligation kit according to the manufacturerвЂ™s instructions. The resulting libraries were quantified by fluorometry using a Qubit High Sensitivity DNA quantification kit (ThermoFisher) and 100 fmol of each resulting library was used to load a Promethion flowcell.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

text: Heterocephalus glaber

text: Heterocephalus glaber

text: gonad

text: Heterocephalus glaber

text: male

characteristic: sex

text: WT

characteristic: strain


text: Department of Molecular Genetics, University of Toronto; Genetics and Genome Biology, SickKids Research Institute

text: public

characteristic: SRA accession

text: E-MTAB-11831:BRE_Female_Gonad_10x_Linked_WGS

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: breeder

text: naked mole-rat

characteristic: common name

text: Protocols: A female breeder (approximately 4 years of age), male breeder (approximately 5.5 years of age) naked-mole-rat and a female and male subordinate (offspring of the breeders; approximately 1 year of age) were selected. Animals were anesthetized with isoflurane and rapidly decapitated. A gonad was removed for each animal and flash frozen in isopentane on dry ice. Tissue for DNA extraction was homogenized in cell lysis buffer [10mM TRIS(pH8.0), 25mM EDTA, 100mM NaCl, 0.5% SDS, RNase A] and digested with proteinase K overnight at 37C. The resulting lysate was extracted twice with TRIS saturated phenol (pH8.0) followed by a single extraction with chloroform. DNA was precipitated from solution by adding 1/10th volume 3M Sodium Acetate and 2.5 volumes of 95% ethanol followed by gentle inversion. Precipitated DNA was spooled onto a glass rod and washed with excess 70% ethanol and allowed to partially air dry before being resuspended in an appropriate volume of EB [10mM TRIS (pH8.0)] The Genome Reagent Kits v2 User Guide, Protocol Step 4 (https://support.10xgenomics.com/genome-exome/index/doc/user-guide-chromium-genome-reagent-kit-v2-chemistry) library construction protocol was followed exactly with no changes.

characteristic: description

text: adult

text: wild type genotype

text: not applicable

characteristic: isolate

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: gonad

characteristic: organism part

text: Heterocephalus glaber

text: female

text: WT


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11831:BRE_Male_Gonad_10x_Linked_WGS

text: ArrayExpress

text: breeder

text: naked mole-rat

text: adult

text: wild type genotype

text: not applicable

text: Heterocephalus glaber

text: Heterocephalus glaber

text: gonad

text: Heterocephalus glaber

text: male

text: WT

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11831:SUB_Female_Gonad_10x_Linked_WGS

text: ArrayExpress

text: subordinate

characteristic: colony hierarchy position

text: naked mole-rat

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

text: Heterocephalus glaber

text: Heterocephalus glaber

text: gonad

text: Heterocephalus glaber

text: female

characteristic: sex

text: WT

characteristic: strain


text: public

text: E-MTAB-11831:SUB_Male_Gonad_10x_Linked_WGS

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: subordinate

text: naked mole-rat

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: not applicable

characteristic: isolate

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: gonad

characteristic: organism part

text: Heterocephalus glaber

text: male

text: WT


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Tree of Life Programme

text: Arporn Wangwiwatsin

characteristic: collected by

text: Khon Kaen University

characteristic: collecting institution

characteristic: collection date

text: Thailand

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Khon Kaen

characteristic: geographic location (region and locality)

text: Urban

characteristic: habitat

text: Narong Kuntikeo

characteristic: identified by

text: Khon Kaen University

text: adult

characteristic: lifestage

text: Opisthorchis viverrini

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Opisthorchis viverrini

text: HERMAPHRODITE MONOECIOUS

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Arporn Wangwiwatsin

text: Khon Kaen University

text: Thailand

text: Khon Kaen

text: Urban

text: Narong Kuntikeo

text: Khon Kaen University

text: adult

text: Opisthorchis viverrini

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: sample same as

text: Opisthorchis viverrini

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: NOT COLLECTED

text: N


text: University clinic Duesseldorf

text: public

tag: Namespace:University clinic Duesseldorf

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University clinic Duesseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

text: not collected

text: Germany

text: human

text: not collected

text: homo sapien

text: not collected


text: GA

text: TA

characteristic: GENOTYPE

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR BIOLOGY

characteristic: common name

text: 16S rRNA gene amplicons from bacteria on plant leaves and A.thaliana Gigantea amplicons (hamPCR)

characteristic: description

text: collection

characteristic: organism

text: collection


text: GA

text: TA

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: 16S rRNA gene amplicons from bacteria on plant leaves and A.thaliana Gigantea amplicons

text: collection

text: collection


text: GA

text: TA

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: collection

text: collection


text: TC

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: collection

text: collection


text: GA

text: TA

text: #N/A

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: #N/A

text: #N/A

text: collection

text: collection


text: TC

text: #N/A

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: #N/A

text: #N/A

text: collection

text: collection


text: IFREMER

text: public

text: GV team (IFREMER)

characteristic: collected by

characteristic: collection date

text: Vibrio aestuarianus 01-032

text: France

characteristic: geographic location (country and/or sea)

text: Argenton, Brittany

characteristic: geographic location (region and locality)

text: Oyster

characteristic: isolation source

text: Vibrio aestuarianus

text: Vibrio aestuarianus

characteristic: strain

text: Vibrio aestuarianus 01-032


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 01-151

text: France

text: La Trinit�, Brittany

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 01-151

characteristic: title


text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: GV team (IFREMER)

text: Vibrio aestuarianus 01-308

text: France

text: Normandy

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 01-308


text: IFREMER

text: public

characteristic: Submitter Id

text: GV team (IFREMER)

text: Vibrio aestuarianus 02-041

characteristic: description

text: France

text: Argenton, Brittany

text: Oyster

text: Vibrio aestuarianus

characteristic: organism

text: Vibrio aestuarianus

text: Vibrio aestuarianus 02-041


text: IFREMER

text: public

text: GV team (IFREMER)

characteristic: collected by

characteristic: collection date

text: Vibrio aestuarianus 07-115

text: France

characteristic: geographic location (country and/or sea)

text: Brittany

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 07-115


text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 11-KB19

text: Spain

text: Fangar Bay

characteristic: geographic location (region and locality)

text: Oyster

characteristic: isolation source

text: Vibrio aestuarianus

text: Vibrio aestuarianus

characteristic: strain

text: Vibrio aestuarianus 11-KB19


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 11-U17

text: Italy

text: Goro lagoon

text: Zooplankton

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 11-U17


characteristic: External Id

text: IFREMER

characteristic: INSDC center name

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 12-016a

text: France

text: La Tremblade, Charente Maritime

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 12-016a

characteristic: title


text: IFREMER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GV team (IFREMER)

text: Vibrio aestuarianus 12-055

text: France

text: Agnas, Charente Maritime

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 12-055


text: IFREMER

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: GV team (IFREMER)

text: Vibrio aestuarianus 12-063

characteristic: description

text: France

text: Brest, Brittany

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 12-063


text: IFREMER

text: public

text: GV team (IFREMER)

characteristic: collected by

characteristic: collection date

text: Vibrio aestuarianus 12-122

text: France

text: Brittany

text: Cockle

text: Vibrio aestuarianus

characteristic: organism

text: Vibrio aestuarianus

text: Vibrio aestuarianus 12-122


text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 12-128a

text: France

characteristic: geographic location (country and/or sea)

text: Brittany

characteristic: geographic location (region and locality)

text: Oyster

characteristic: isolation source

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 12-128a


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFREMER

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 12-130

text: France

text: Agnas, Charente Maritime

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

characteristic: strain

text: Vibrio aestuarianus 12-130


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

text: public

text: GV team (IFREMER)

text: Vibrio aestuarianus 12-142

text: France

text: Normandy

text: Oyster

text: Vibrio aestuarianus

text: Vibrio aestuarianus

text: Vibrio aestuarianus 12-142


text: University clinic Duesseldorf

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

characteristic: INSDC status

text: N

characteristic: SRA accession

characteristic: Submitter Id

text: 16S rRNA gene amplicons from plant leaves

characteristic: common name

text: 16S rRNA gene amplicons, using 515F and 799R primers

characteristic: description

text: A.thaliana

characteristic: host

text: collection

characteristic: organism

text: collection


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: N

text: 16S rRNA gene amplicons from blank sample

text: A.thaliana

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: N

text: A.thaliana

text: collection

text: collection


text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: A.thaliana

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: A.thaliana

text: collection

text: collection


text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: N

text: B.napus

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: N

text: B.napus

text: collection

text: collection


text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: B.napus

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: B.napus

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: 16S rRNA gene amplicons from soil

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: 16S rRNA gene amplicons from soil

text: lysateLB

text: collection

text: collection


text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Y

text: lysateLB

text: collection

text: collection


text: BLANK

text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: 16S rRNA gene amplicons from blank

text: blank

text: collection

text: collection


text: University clinic Duesseldorf

text: public

characteristic: collecting institution

characteristic: collection date

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id


characteristic: ENA-CHECKLIST

text: CHRISTIAN-ALBRECHTS UNIVERSITY OF KIEL

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CHRISTIAN-ALBRECHTS UNIVERSITY OF KIEL

characteristic: Submitter Id

text: not provided

text: human

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

characteristic: project name

text: Homo sapiens

text: Illumina NovaSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JHI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild barley (Hordeum spontaneum) from Israel

text: Israel

characteristic: geographic location (country and/or sea)

text: 31.690 35.013

characteristic: lat lon

text: Hordeum vulgare subsp. spontaneum

text: Hordeum vulgare subsp. spontaneum


text: AG

text: AG

text: blank

characteristic: GENOTYPE

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

characteristic: INSDC status

text: blank

text: blank

characteristic: SRA accession

characteristic: Submitter Id

characteristic: common name

text: 16S rRNA gene amplicons and A.thaliana Gigantea amplicons (hamPCR)

characteristic: description

text: blank

text: collection

text: collection


text: CT

text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: collection

characteristic: organism

text: collection


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: collection

text: collection

characteristic: title


characteristic: ENA-CHECKLIST

text: AG

text: AG

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: collection

text: collection


characteristic: ENA-FIRST-PUBLIC

text: CT

text: CT

text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: BOIL

text: collection

text: collection


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: INSDC status

text: unknown

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:53

text: mouse-ald-gta sample 1596gDNA

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: unknown

text: Not applicable

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 2

characteristic: host subject id

characteristic: host taxid

text: unknown

characteristic: host weight

text: days

text: Not applicable

text: g

characteristic: latitude

text: unknown

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: unknown

text: KZALD

text: EtOH

text: Not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: unknown

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:54

text: mouse-ald-gta sample 300gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: unknown

text: Not applicable

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 3

text: unknown

text: days

text: Not applicable

text: g

text: unknown

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: unknown

text: KZALD

characteristic: title

text: EtOH

text: Not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: unknown

text: 5/23/17 11:55

text: mouse-ald-gta sample 457gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

text: unknown

text: Not applicable

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 4

characteristic: host subject id

characteristic: host taxid

text: unknown

characteristic: host weight

text: days

text: Not applicable

text: g

characteristic: latitude

text: unknown

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: unknown

text: KZALD

text: EtOH

text: Not applicable


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:00

text: mouse-ald-gta sample 5499gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 1

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:01

text: mouse-ald-gta sample 5500gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 2

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:02

text: mouse-ald-gta sample 5501gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 3

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:03

text: mouse-ald-gta sample 5502gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 4

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:04

text: mouse-ald-gta sample 5503gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 5

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:05

text: mouse-ald-gta sample 5504gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 6

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:06

text: mouse-ald-gta sample 5505gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 7

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Alcohol

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:07

text: mouse-ald-gta sample 5506gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 8

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:08

text: mouse-ald-gta sample 5507gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 9

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: TRUE

text: KZALD

characteristic: title

text: Alcohol

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:09

text: mouse-ald-gta sample 5508gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 10

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Glucose

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:10

text: mouse-ald-gta sample 5509gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 11

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Glucose

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:11

text: mouse-ald-gta sample 5510gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 12

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Glucose

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:12

text: mouse-ald-gta sample 5511gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 13

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Glucose

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:13

text: mouse-ald-gta sample 5512gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 14

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Glucose

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:14

text: mouse-ald-gta sample 5513gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 15

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Glucose

text: Glycerol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:15

text: mouse-ald-gta sample 5514gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 16

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:16

text: mouse-ald-gta sample 5515gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 17

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:17

text: mouse-ald-gta sample 5516gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 18

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: alt

characteristic: anonymized name

characteristic: cage

text: 5/23/17 11:18

text: mouse-ald-gta sample 5517gDNA

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:gastrointestinal system

text: Not applicable

text: UBERON:lumen of gut

text: UBERON:cecum

text: mouse

characteristic: host common name

text: Not applicable

text: adult

text: Mus musculus

text: mouse 19

text: weeks

text: Not applicable

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: cecum content

text: mouse gut metagenome

text: male

text: FALSE

text: KZALD

characteristic: title

text: Alcohol

text: GTA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5/23/17 11:19

text: mouse-ald-gta sample 5518gDNA

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: intestine environment

text: USA:CA:San Diego

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: Not applicable

characteristic: host body mass index

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:cecum

characteristic: host body site

text: mouse

text: Not applicable

characteristic: host height

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: mouse 20

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: Not applicable

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: UCSDMI

text: FALSE

text: cecum content

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: FALSE

characteristic: sick

text: KZALD

text: Alcohol

text: GTA