COG-UK/LOND-YYBFOQJ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: COG-UK/LOND-YYBFOQJ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBFOQJ

text: not provided


status: PUBLIC

tag: attribute

text: Quadram Institute Bioscience

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Quadram Institute Bioscience

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: Quadram Institute Bioscience

characteristic: collection date

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: receipt date

text: active surveillance in response to outbreak

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

text: United Kingdom

text: Scotland

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: not provided


text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, Imperial College Healthcare NHS Trust

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBROCX

text: University College London, Great Ormond Street Hospital for Children NHS Foundation Trust, Imperial College Healthcare NHS Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBROCX

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBROCX

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: not provided


COG-UK/LOND-YYBDKIR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBDKIR

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBDKIR

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBRQCT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBRQCT

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBRQCT

text: not provided


COG-UK/LOND-YYBNOCU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBNOCU

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBNOCU

text: not provided


COG-UK/LOND-YYBNIPC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBNIPC

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBNIPC

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBNFPH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBNFPH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBNFPH

text: not provided


COG-UK/LOND-YYBNBZM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBNBZM

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBNBZM

text: not provided


COG-UK/LOND-YYBYQDM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBYQDM

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBYQDM

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: Quadram Institute Bioscience

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

text: not provided


COG-UK/LOND-YYBRCTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBRCTE

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBRCTE

text: not provided


COG-UK/LOND-YYBFGHS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBFGHS

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBFGHS

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBNXIB

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBNXIB

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBNXIB

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: Quadram Institute Bioscience

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: receipt date

text: not provided

text: not provided


COG-UK/LOND-YYBYCYU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBYCYU

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBYCYU

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBYOCZ

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBYOCZ

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBYOCZ

text: not provided


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: not provided


COG-UK/LOND-YYBNOFB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBNOFB

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBNOFB

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBDYSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBDYSC

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBDYSC

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: not provided


COG-UK/LOND-YYBDBIP

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBDBIP

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBDBIP

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBGMTF

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBGMTF

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBGMTF

text: not provided


COG-UK/LOND-YYBRGTQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBRGTQ

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBRGTQ

text: not provided


COG-UK/LOND-YYBFCTG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBFCTG

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBFCTG

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBRBKN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBRBKN

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBRBKN

text: not provided


COG-UK/LOND-YYBDTCO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBDTCO

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBDTCO

text: not provided


COG-UK/LOND-YYBDCAH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBDCAH

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBDCAH

characteristic: title

text: not provided

characteristic: virus identifier


COG-UK/LOND-YYBFTQE

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBFTQE

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: COG-UK/LOND-YYBFTQE

text: not provided


COG-UK/LOND-YYBNZHM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBNZHM

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBNZHM

text: not provided


COG-UK/LOND-YYBNJPA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBNJPA

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBNJPA

characteristic: title

text: not provided

characteristic: virus identifier


text: Quadram Institute Bioscience

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: Quadram Institute Bioscience

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: receipt date

characteristic: sample capture status

text: not provided

text: not provided


COG-UK/LOND-YYBGNBX

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBGNBX

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBGNBX

text: not provided


text: Quadram Institute Bioscience

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

text: Quadram Institute Bioscience

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: not provided


COG-UK/LOND-YYBRPXC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBRPXC

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: not provided

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBRPXC

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: Quadram Institute Bioscience

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: receipt date

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

text: not provided


COG-UK/LOND-YYBGUEO

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COG-UK/LOND-YYBGUEO

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

text: not provided

text: COG-UK/LOND-YYBGUEO

text: not provided


COG-UK/LOND-YYBYQUK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COG-UK/LOND-YYBYQUK

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: COG-UK/LOND-YYBYQUK

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University of Zurich Institute for Plant and Microbial Biology

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: Dark induced detached leaves sampled after 0d and 3d in the dark. 100mg tissue harvested an frozen in liquid nitrogen. Plants grown for 6 weeks on soil in short day condition (8h day/16h light), 23��C, 65% humidity, 100-200umol light Dark incubation of detached leaves on wet filter paper. Qiagen RNeasy kit standard Illumima protocol using Illumina Truseq RNA library prep kit v2

characteristic: description

text: FL.02 1/2 of flowers open stage

characteristic: developmental stage

text: Columbia ecotype

characteristic: ecotype

text: CYP89a9; TIC55; MES16

characteristic: genotype

text: no light

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

unit: day

characteristic: time


characteristic: ENA-CHECKLIST

text: University of Zurich Institute for Plant and Microbial Biology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: FL.02 1/2 of flowers open stage

text: Columbia ecotype

text: CYP89a9; TIC55; MES16

text: no light

text: not applicable

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: FL.02 1/2 of flowers open stage

text: Columbia ecotype

text: no light

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana


text: public

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: FL.02 1/2 of flowers open stage

characteristic: developmental stage

text: Columbia ecotype

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: no light

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: Indian Institute of Technology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-07-04-2022-14:46:40:405-309

tag: Namespace:Indian Institute of Technology

characteristic: Submitter Id

text: Mukesh Aakula

text: Oil sludge contaminated soil

text: India

characteristic: geographic location (country and/or sea)

text: Gourisagar,Sivasagar,Assam

characteristic: geographic location (region and locality)

text: soil metagenome

text: soil metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Rostock University Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Rostock University Medical Center

text: Gut microbiome dynamics in short bowel syndrome mice

text: soil metagenome

characteristic: organism

text: soil metagenome

characteristic: title


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19719

tag: Namespace:ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: cocker spaniel

characteristic: breed

text: dog

characteristic: common name

text: case

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M

characteristic: sex

text: WGS of dogs and cats with suspected heritable conditions


characteristic: ENA-CHECKLIST

text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19720

text: Labrador retriever

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19721

text: Labrador retriever

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19722

characteristic: Submitter Id

text: Labrador retriever

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: F


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19723

text: Labrador retriever

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19724

text: Labrador retriever

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19725

text: German wirehaired pointer

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19726

text: German wirehaired pointer

text: dog

text: case

text: Canis lupus familiaris

text: Canis lupus familiaris

text: M


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19727

text: German wirehaired pointer

text: dog

text: unaffected

text: Canis lupus familiaris

text: Canis lupus familiaris

text: F


text: public

text: ena-SAMPLE-TAB-09-04-2022-22:31:28:156-19728

text: German wirehaired pointer

text: dog

text: unaffected

text: Canis lupus familiaris

text: Canis lupus familiaris

text: F


text: Henan Provincial People's Hosipital

text: public

tag: Namespace:Henan Provincial People's Hosipital

characteristic: collection date

text: human fluid samples of viral infections

text: not collected

characteristic: environment (biome)

text: not collected

characteristic: environment (feature)

text: not collected

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human-associated environmental package

text: metagenome

characteristic: investigation type

text: human metagenome

characteristic: project name

text: human metagenome

text: DNA nanoball sequencing

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BRGM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: description

text: Yes

text: France

text: fungus metagenome

characteristic: organism

text: fungus metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: BRGM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Yes

text: France

text: soil metagenome

text: soil metagenome


text: public

tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Lake Thun, Switzerland; 5 m depth, June-2018

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

characteristic: file name

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: lake water metagenome

text: ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-03-12-2019-09:06:06:235-971

text: lake water metagenome

text: Illumina Novaseq

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT; kmer set 29,49,69,89,109,119,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Attersee

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Austria

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Attersee

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Constance

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Switzerland

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Lugano

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Lugano

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Italy

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Nitrosarchaeum sp. isolated from the hypolimnion of Lake Lugano

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: uncultured Candidatus Nitrosoarchaeum sp.

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Nitrosarchaeum sp. archaeon isolated from the hypolimnion of Lake Lugano

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Italy

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Maggiore

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Maggiore

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Italy

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Nitrosarchaeum sp. isolated from the hypolimnion of Lake Maggiore

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Mondsee

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Czech Republic

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Thun

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Thun

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Switzerland

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Traunsee

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: MEGAHIT; kmer set 29,49,69,89,109,119,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Traunsee

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Austria

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: Thaumarchaeota archaeon isolated from the epilimnion of Lake Zurich

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Thaumarchaeota archaeon isolated from the hypolimnion of Lake Zurich

characteristic: description

text: freshwater lake

text: large lake

text: fresh water

text: Switzerland

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Thaumarchaeota archaeon

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Thaumarchaeota archaeon

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: coverage and kmer

text: checkm

text: freshwater lake

characteristic: environment (biome)

text: large lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Thaumarchaeota archaeon

text: Thaumarchaeota archaeon

text: Illumina HiSeq 2500

text: multi-marker approach


text: UNIVERSITY OF OULU

text: public

tag: Namespace:UNIVERSITY OF OULU

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: Finland

text: human-associated

characteristic: human-associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: ChIP-seq data of HIF2A with VHL mutations

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

characteristic: title


Input

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Input

text: human

text: Input

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina

text: Input


text: UNIVERSITY OF OULU

text: public

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

text: eukaryote

text: Homo sapiens

text: RNA-seq data of VHL mutations

text: Homo sapiens

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VANDERBILT UNIVERSITY

text: public

tag: Namespace:VANDERBILT UNIVERSITY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Male mice homozygous for Zfp92 mutation and wild-type littermates were used for islet isolations at 14 weeks of age. Mouse islets were isolated following injection of 0.6 mg/mL Collagenase P (Roche) into the pancreatic bile duct. Partially dissociated tissue was fractionated using a Histopaque-1077 (Sigma) gradient followed by hand-picking of islets. Islets from individual mice were used for separate RNA sample isolations. All mice used for experiments were on C57Black/6J background. Wild type and Zfp92 knockout islets were used in the experiment. Total RNA was extracted from isolated mouse pancreatic islets using the Maxwell simplyRNA kit (Promega). cDNA libraries were constructed using Illumina library prep kit at Novogene.

characteristic: description

text: adult

characteristic: developmental stage

text: Zfp92 knockout

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: islet of Langerhans

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VANDERBILT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DBSSE-ETHZ

text: public

text: mixed

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: axolotl

text: Protocols: Anesthetized axolotls were injected intraperitoneally with 800 μM EdU (diluted in 1xPBS) at a dosage of 10 μl/g. FastGreen dye (Sigma-Aldrich) was added to the injection mix to aid visualization. Injected axolotls were kept out of water for a 15 min recovery period under benzocaine-soaked towels. After recovery, injected axolotls were returned to water. Following the desired pulse-chase period, axolotls were sacrificed and brains harvested. Animals were deeply anesthetized in 0.03% benzocaine and rectangular cranial skin/skull flaps above the right telencephalon hemisphere were performed using scalpels, forceps and spring scissors. A 1mm x 1mm piece of dorsolateral telencephalon was removed and the injury was always positioned between the choroid plexus and the olfactory bulb. After the injury, the cranial skin/skull flaps were restored without suture and the axolotls were returned to individual tanks. Frozen pallium dissections were dissociated for generating single-nuclei gene-expression libraries similarly to described above with some modifications (3). In brief, we prepared and precooled wash and Div-seq lysis buffers before moving tissue pieces to a precooled 1.5mL tube. 50µL of lysis buffer was added to the sample and dissociated via 2-5 short pulses with an electric grinder. The pestle of the grinder was washed with a 150µl wash buffer before centrifugation for 5 min at 500xg (4°C). Supernatant was removed and the pellet gently washed with 200µl of wash buffer before centrifugation for 5 min at 500xg (4°C). Supernatant was removed and the pellet was resuspended in 55µl of wash buffer. Resulting nuclei were then assessed (count and viability) using Trypan Blue assay, counted using the automated cell counter Countess (Thermo Fisher).EdU staining was performed immediately using Click-iT EdU Flow Cytometry assay Kit (Thermo Fisher Scientific, #C10424), 500 µl reaction buffer was added directly to the resuspension buffer (mix is made following the manufacturer’s protocol), mixed well and left in RT for 30min. 3ml of wash buffer was added to the resuspended nuclei and mixed well, then nuclei were spun down for 5 min at 500xg (4°C), supernatant was removed and nuclei were resuspended in 500 µl PBS + 0.5% BSA with DAPI and FACS sorted immediately. For snRNAseq profiling, nuclei were diluted to an appropriate concentration to obtain approximately 2,000-10,000 nuclei per lane of a 10x microfluidic chip device. Single-nuclei cDNA was synthesized per manufacturer recommendations (10x Genomics v3.1) before continuing to library preparation with 25% of the total cDNA volume.

characteristic: description

text: adult

characteristic: developmental stage

text: pool

text: not applicable

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: pallium

text: Ambystoma mexicanum

text: mixed

text: EdU labeling

characteristic: stimulus

text: White (d/d)


text: HARVARD MEDICAL SCHOOL

text: public

tag: Namespace:HARVARD MEDICAL SCHOOL

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:The Garvan Institute of Medical Research

text: ArrayExpress

text: retinal pigment epithelial cell

text: human

text: Protocols: RPE cells were harvested with 0.25% Trypsin-EDTA for 8 min, inactivated with RPE medium, and dissociated using manual trituration to yield a single-cell suspension. The cell suspension was centrifuged (5 minutes, 300 g, 4 °C), following which cells were resuspended in 1 mL of 0.1% BSA in PBS solution. Subsequently, cells were counted and assessed for viability with Trypan Blue, then pooled (eight samples maximum) at a concentration of 1000 live cells/μl (1*10^6 cells/mL) for single cell RNA-sequencing. Punch biopsies were obtained from subjects over the age of 18 years. Fibroblasts were expanded, cultured and banked in DMEM with high glucose, 10% fetal bovine serum (FBS), L-glutamine, 100 U/mL penicillin and 100 μg/mL streptomycin (all from Thermo Fisher Scientific, USA). All cell lines were mycoplasma-free (MycoAlert mycoplasma detection kit, Lonza, Switzerland). Fibroblasts at passage (p) 2 were used for reprogramming into iPSCs. iPSCs were maintained and passaged using a TECAN liquid handling platform, and cultured onto vitronectin XF™-coated plates (Stem Cell Technologies) in StemFlex™ (Thermo Fisher Scientific), with media changes every second day and weekly passaging using ReLeSR™ (Stem Cell Technologies). Reprogrammed RPE cells were maintained on RPE medium (Alpha-MEM, 5% FBS, non-essential amino acids, N1 supplement, penicillin - streptomycin - glutamate, taurine - hydrocortisone - triiodothyronine) and cultured for a further 22-29 days with media changes every 2-3 days. Cells were then passaged with 0.25% trypsin-EDTA and plated onto growth factor-reduced Matrigel-coated plates (Corning) to enrich in RPE cells for an additional 30 days (76-88 days total). Fibroblasts were reprogrammed into iPSCs through the nucleofection (Lonza) of episomal vectors expressing OCT-4, SOX2, KLF4, L-MYC, LIN28 and shRNA against p53 in feeder- and serum-free conditions using TeSR™-E7™medium (Stem Cell Technologies). Pluripotent cells were selected using anti-human TRA-1-60 Microbeads (Miltenyi). Pluripotency was assessed by expression of the markers OCT3/4 (sc-5279, Santa Cruz Biotechnology) and TRA-1-60 (MA1-023-PE, Thermo Fisher Scientific; ab16288, Abcam) by immunocytochemistry, and virtual karyotyping by CNV array on all lines. iPSCs were differentiated into RPE using E6 medium (Stem Cell Technologies) containing N2 supplement (Life Technologies), penicillin - streptomycin (Life Technologies) for 21-38 days (to reach RPE differentiation). Multi-donor single cell suspensions were loaded on to the wells of 10x Genomics Single A Chip and cDNA was extracted using the Chromium Single Cell 3′ Library & Gel bead kit (10x Genomics; PN-120237). cDNA was amplified through reverse transcription performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad) as follows: 45 min at 53 °C; 5 min at 85 °C; hold 4 °C. cDNA was recovered and purified with DynaBeads MyOne Silane Beads (Thermo Fisher Scientific; catalog no. 37002D). Subsequently, it was amplified as follows: for 3 min at 98°C; 12× (for 15 sec at 98 °C; for 20 sec at 67 °C; for 60 sec at 72°C); for 60 sec at 72 °C; hold 4 °C followed recommended cycle number based on targeted cell number. Amplified cDNA was purified with SPRIselect beads (Beckman Coulter; catalog no. B23318) and underwent quality control following manufacturer’s instructions.

text: adult

text: mixed normal and age-related macular degeneration

characteristic: disease

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Garvan Institute of Medical Research

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: retinal pigment epithelial cell

text: human

characteristic: common name

text: adult

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin

text: induced pluripotent stem cell

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: not provided

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: goose

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Heidelberg

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: goose meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Heidelberg


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: food sample

text: Pakistan

text: not provided

text: not provided

text: not provided

text: fish

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Hadar


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: not provided

text: poultry

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Virchow


text: ANSES

text: public

text: environment

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: quail

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: environment

text: Algeria

text: not provided

text: Gallus gallus

text: not provided

text: poultry

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Heidelberg

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feed sample

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: fishmeal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Montevideo


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: not provided

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Thompson


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: food sample

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: spices anot provided conot providediment herbs - dried

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kentucky


text: ANSES

text: public

text: not provided

text: not provided

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: not provided

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Thompson

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: marinated quail leg

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Inot providediana

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: marinated quail fillet

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Inot providediana


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: farm environment

text: France

text: not provided

text: Gallus gallus

text: not provided

text: poultry - broilers

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Inot providediana


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: poultry not specified

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Virchow


text: ANSES

text: public

text: environment

text: France

text: not provided

characteristic: host health state

text: Soliped

characteristic: host scientific name

text: not provided

text: domestic - horses

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Kentucky

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: organ/tissue

text: France

text: not provided

text: Gallus gallus

text: not provided

text: poultry

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Gallinarum

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: curry raw chicken skewer

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Infantis


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: cheese

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Dublin


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: turkey

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kentucky


text: ANSES

text: public

text: food sample

text: France

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: not provided

text: chicken meat

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Hadar

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: porc saussage

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Livingstone

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: faeces

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: pork

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Goldcoast


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: farm environment

text: France

text: not provided

text: Gallus gallus

text: not provided

text: poultry - laying hens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kottbus


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: duck

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kottbus


text: ANSES

text: public

text: environment

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: food not specified

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Newport

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: faeces

text: France

text: not provided

text: not provided

text: not provided

text: cattle

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: environment

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: cattle

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Dublin


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: porc meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Rissen


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: turkey

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: ANSES

text: public

text: factory environment

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: feed

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Schwarzengrunot provided

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: orange tree (dehydrated herbs)

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: ParatyphiB

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: India

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: cooked dish

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Agona


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: turkey carcass

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Saintpaul


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: not provided

text: poultry - broilers

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Agona


text: ANSES

text: public

text: eco-system

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: water - river

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Muenster

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: factory environment

text: France

text: not provided

text: not provided

text: not provided

text: feed

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: ParatyphiB

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: farm environment

text: France

text: not provided

text: Gallus gallus

text: not provided

characteristic: isolate

text: poultry - broilers

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Senftenberg


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: food sample

text: Reunion

text: not provided

text: Gallus gallus

text: not provided

text: poultry meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Virchow


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment dist

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: geese

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: ParatyphiB


text: ANSES

text: public

text: factory environment

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: feed

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Hadar

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: factory environment

text: France

text: not provided

text: not provided

text: not provided

text: feed

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Newport

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: factory environment

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: feed

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Livingstone


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: organ/tissue

text: France

text: not provided

text: not provided

text: not provided

text: wild bird

text: Salmonella enterica subsp. diarizonae

text: Salmonella enterica subsp. diarizonae

text: IIIb 61:k:1,5,7


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: food sample

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: turkey meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kentucky


text: ANSES

text: public

text: feed sample

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: feed for poultry

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: feed sample

text: France

text: not provided

text: not provided

text: not provided

text: feed for turkey

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: not provided

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: not provided

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Chester


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: food sample

text: France

text: not provided

text: Gallus gallus

text: not provided

text: chicken meat

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: ParatyphiB


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: turkey

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


text: ANSES

text: public

text: farm environment

text: France

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: not provided

text: poulrty - laying hens

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Senftenberg

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: farm environment

text: France

text: not provided

text: not provided

text: not provided

text: turkey

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Senftenberg

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: Reunion

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: shellfish - prawns - raw

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: ParatyphiB


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: farm environment

text: France

text: not provided

text: Gallus gallus

text: not provided

text: poulrty - laying hens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Agona


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: food sample

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: not provided

text: goat's milk cheese

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Newport


text: ANSES

text: public

text: food sample

text: France

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: daily product not specified

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Reading

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ANSES

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

text: daily product not specified

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: strain

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: daily product not specified

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Bredeney


characteristic: ENA-FIRST-PUBLIC

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: factory environment

text: France

text: not provided

text: not provided

text: not provided

text: cow's milk

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kedougou


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: collection date

text: farm environment

characteristic: description

text: Reunion

characteristic: geographic location (country and/or sea)

text: not provided

text: Gallus gallus

text: not provided

text: poultry - broilers

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Lonot providedon


text: ANSES

text: public

text: factory environment

text: France

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: not provided

text: poultry meat

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Chester

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

tag: Namespace:Uppsala University, Department of Medical Sciences, Molecular Epidemiology

text: Human gut metagenome, SCAPIS Uppsala, sample 1264

text: feces

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: Human gut metagenomes of SCAPIS Uppsala and Malmo

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Universidad de Extremadura

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Universidad de Extremadura

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: MCF7 and MDA-MB-231 cell lines were cultured in Dulbecco’s Modified Eagle Medium (DMEM, Gibco) supplemented with 10% fetal bovine serum (FBS, Gibco), and 1% penicillin/streptomycin (Gibco). For MCF7 and MDA-MB-231, media was additionally supplemented with 10 µg/ml human insulin (Sigma-Aldrich). MCF10-A cell line was cultured in DMEM/F12 (Sigma-Aldrich) supplemented with 5% heat-inactivated horse serum (Gibco), 20 ng/ml epidermal growth factor (Sigma-Aldrich), 0.5 mg/ml hydrocortisone (Sigma-Aldrich), 100 ng/ml cholera toxin (Sigma-Aldrich), 10 µg/ml insulin (Sigma-Aldrich), and 1% penicillin/streptomycin (Gibco). Cells were cultured at 37°C in a humidified incubator at 5% CO2. HEK293T cells were co-transfected with pLKO.1-Puro containing shRNA1 and shRNA2 against METTL3 or scramble control (Table S1), the packaging vector pCMV-dR8.2-dvpr and the envelope vector pCMV-VSV-G (ratio 6:8:2), with Jet-PEI Polyplus following the manufacturer’s instructions. Lentiviral particles were collected after 48 and 72 hours, filtered through a 0.45 µm filter and concentrated using Amicon Ultra-15 Centrifugal Filter (Merck). Knockdown of METTL3 was obtained by lentiviral transduction with the lentiviral particles in media supplemented with Polybrene (8 µg/ml). Transduced cells were selected by supplementing the culture media with puromycin (1 µg/ml) for an additional 4 days. Total RNA was extracted using the RNeasy Mini Kit (Qiagen) following the manufacturer’s recommendations. 1 ug of RNA from each sample was used for the following protocols. Paired-end libraries were built using Illumina Tru-seq RNA protocols by the Novogene company.

characteristic: description

text: adult

characteristic: developmental stage

text: breast cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens