characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-06

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


status: PUBLIC

tag: attribute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-241481/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-92778/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-11-30

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-114396/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-11-02

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-01-04

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-12-13

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-71817/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-132561/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-73180/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-10057/2020

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-09-21

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2020-12-21

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-03-22

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-07-26

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-38035/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-11-29

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-77572/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-12-07

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2020-09-28

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2021-05-24

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-6842/2020

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2020-05-25

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-28

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-154756/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-02-08

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-1365/2020

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-80705/2020

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-11-08

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-293623/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2021-12-13

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-82122/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-01-04

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-164622/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-169058/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-50445/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-160138/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-84642/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-247932/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-01-10

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2020-10-26

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-5685/2020

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-12-07

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-101899/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-20

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-31173/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-239484/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-11-02

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-10-05

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-111669/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-55482/2020

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Portugal

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: not provided

text: not provided

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


text: UCLouvain

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Fecal pellet

characteristic: description

text: mouse

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: 16S amplicon sequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11850:SUB_Female_Hypothalamus_HiC_Rep1

tag: Namespace:Department of Molecular Genetics, University of Toronto; Genetics and Genome Biology, SickKids Research Institute

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: naked mole-rat

characteristic: common name

text: Protocols: Hi-C 20 subordinate (wild-type) female naked mole-rats between 1-4 years of age were anesthetized with isoflurane and rapidly decapitated. The brain was sliced coronally into 1 mm sections on an acrylic block. Sections were transferred to cold PBS and the hypothalamus removed using a scalpel blade and flash frozen whole in isopentane on dry ice. Hi-C experiments were performed using the Arima Hi-C kit (Arima Genomics) according to the manufacturer’s instructions. Briefly, pooled flash frozen brain tissues were cross-linked with 2% formaldehyde for 20 min at RT in buffer containing 100mM NaCl, 1mM EDTA, 0.5mM EGTA, 50mM HEPES (pH8.0) in 1X PBS. DNA content was estimated and 3ug was used as input per biological replicate. Chromatin was digested with enzyme cocktail included in the kit. Ends were filled-in in the presence of biotinylated nucleotides, followed by subsequent ligation. Ligated DNA was sonicated using the Diagenode Picoruptor ( 10 Cycles of 30 Secs On/Off) to an average fragment size of 400 bp DNA was then subjected to a double-size selection to retain DNA fragments between 200 and 600 bp using Ampure XP beads (Beckman Coulter). Biotin-ligated DNA was precipitated with streptavidin-coupled magnetic beads (included in the kit). The library was prepared using Swift Biosciences Accel-NGS 2s Plus library kit (Cat # 21024). Final amplification before sequencing was done with KAPA Library Amplification Kit ( Cat # KK2620).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Heterocephalus glaber

text: Heterocephalus glaber

text: hypothalamus

characteristic: organism part

text: adult subordinate

characteristic: phenotype

text: Heterocephalus glaber

text: female

characteristic: sex


text: Department of Molecular Genetics, University of Toronto; Genetics and Genome Biology, SickKids Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11850:SUB_Female_Hypothalamus_HiC_Rep2

characteristic: Submitter Id

text: ArrayExpress

text: naked mole-rat

characteristic: description

text: adult

text: wild type genotype

text: not applicable

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: hypothalamus

text: adult subordinate

text: Heterocephalus glaber

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Scotland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Hohenheim University - Institute of Plant Nutrition

characteristic: collection date

text: bread wheat

characteristic: common name

text: Experiement with winter wheat plants: Controlled Temperature 12�C

characteristic: environment (biome)

text: Soil from fieldsite (Kleinhohenheim) tansfered to the greenhouse

characteristic: environment (feature)

text: Rhizosphere Soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Triticum aestivum

text: NocsPS

characteristic: project name

text: Triticum aestivum

text: Ilumina sequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hohenheim University - Institute of Plant Nutrition

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: bread wheat

text: Rhizosphere Soil

text: Germany

text: Triticum aestivum

characteristic: organism

text: NocsPS

text: Triticum aestivum

text: Ilumina sequencing

text: soil

characteristic: title


text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Wheat Blast fungus from Wheat #16 variety 19TH EBSWYT-82

characteristic: description

text: Zambia

characteristic: geographic location (country and/or sea)

text: Mpika

characteristic: geographic location (region and locality)

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #3 variety COUCAL

text: Zambia

text: Mpika

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #4 variety RAWYT-1-26

text: Zambia

text: Mpongwe

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #6 variety RPWYT-35

text: Zambia

text: Mpika

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #7 variety 19TH ESBWYT-45

text: Zambia

text: Mpongwe

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #8 variety COUCAL

text: Zambia

text: Mpika

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #9 variety RNWYT-18

text: Zambia

text: Mount Makulu

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #10 variety HON-9

text: Zambia

text: Mpika

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #11 variety KWALE

text: Zambia

text: Mpika

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #13 variety COUCAL

text: Zambia

text: Mount Makulu

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #14 variety 20TH FHBSN-50

text: Zambia

text: Mount Makulu

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #15 variety 19TH EBSWYT-18

text: Zambia

text: Mpongwe

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


text: JIC

text: public

text: Wheat Blast fungus from Wheat #17 variety 29TH HRSWN-8

text: Zambia

text: Mount Makulu

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Magnaporthe oryzae


E-MTAB-11805:Sample 3

text: public

text: E-MTAB-11805:Sample 3

tag: Namespace:Department of microbiology and immunology, University of Gothenburg, SWEDEN

text: 10 to 20

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD3+ T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Peyer´s patch cells were excised from the small intestine and single-cell solutions prepared. CD3+ T cells were isolated via cell sorting into eppendorf tubes using a BD FACSAria cell sorter. Sorted cells were directly transferred from the tube to the 10X cartridge. 10XV1 10XV1

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mouse 3

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Peyer's patch

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: No pretreatment

characteristic: stimulus

characteristic: strain

text: Sample 3


E-MTAB-11805:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of microbiology and immunology, University of Gothenburg, SWEDEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11805:Sample 8

characteristic: Submitter Id

text: 10 to 20

text: ArrayExpress

text: CTB tetramer binding T cell

text: house mouse

text: Protocols: Peyer´s patch cells were excised from the small intestine of mice that had been orally immunized with cholera toxin 7 days previously and single-cell solutions prepared. Antigen specific cells were identified using a CTB specific MHCII tetramer and were isolated via cell sorting into eppendorf tubes using a BD FACSAria cell sorter. Sorted cells were directly transferred from the tube to the 10X cartridge. 10XV1 10XV1

text: adult

text: wild type genotype

text: Pool 1 8 mice

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

text: Oral immunization CT 7 days before

text: Sample 8

characteristic: title


E-MTAB-11805:Sample 5

text: public

text: E-MTAB-11805:Sample 5

text: 10 to 20

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CTB tetramer binding T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Mesenteric Lymph Node cells were excised from mice that had been orally immunized with cholera toxin 7 days previously and single-cell solutions prepared. Antigen specific cells were identified using a CTB specific MHCII tetramer and were isolated via cell sorting into eppendorf tubes using a BD FACSAria cell sorter. Sorted cells were directly transfered from the tube to the 10X cartridge. 10XV1 10XV1

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Pool 1 8 mice

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: mesenteric lymph node

text: Mus musculus

text: mixed

text: Oral immunization CT 7 days before

text: Sample 5


E-MTAB-11805:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11805:Sample 4

text: 10 to 20

text: ArrayExpress

text: CD3+ T cell

text: house mouse

text: adult

text: wild type genotype

text: Mouse 2

text: not applicable

text: Mus musculus

text: Mus musculus

text: Peyer's patch

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: No pretreatment

characteristic: stimulus

characteristic: strain

text: Sample 4


E-MTAB-11805:Sample 2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11805:Sample 2

characteristic: Submitter Id

text: 10 to 20

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD3+ T cell

text: house mouse

text: Protocols: Mesenteric lymph node cells were excised and single-cell solutions prepared. CD3+ T cells were isolated via cell sorting into eppendorf tubes using a BD FACSAria cell sorter. Sorted cells were directly transferred from the tube to the 10X cartridge. 10XV1 10XV1

text: adult

text: wild type genotype

text: Mouse 2

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mesenteric lymph node

text: Mus musculus

text: mixed

text: No pretreatment

text: Sample 2

characteristic: title


E-MTAB-11805:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11805:Sample 10

text: 10 to 20

text: ArrayExpress

text: CTB tetramer binding T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Peyer´s patch cells were excised from the small intestine of mice that had been orally immunized with cholera toxin and then boosted 5 days before the experiment and single-cell solutions prepared. Antigen specific cells were identified using a CTB specific MHCII tetramer and were isolated via cell sorting into eppendorf tubes using a BD FACSAria cell sorter. Sorted cells were directly transfered from the tube to the 10X cartridge. 10XV1 10XV1

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Pool 3 6 mice

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: Peyer's patch

text: Mus musculus

text: mixed

text: Oral prime and boost immunization CT, boost 5 days before

text: Sample 10


E-MTAB-11805:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11805:Sample 9

text: 10 to 20

text: ArrayExpress

text: CTB tetramer binding T cell

text: house mouse

text: adult

text: wild type genotype

text: Pool 2 6 mice

text: not applicable

text: Mus musculus

text: Mus musculus

text: Peyer's patch

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Oral immunization CT 7 days before

characteristic: stimulus

characteristic: strain

text: Sample 9


E-MTAB-11805:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11805:Sample 7

characteristic: Submitter Id

text: 10 to 20

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CTB tetramer binding T cell

text: house mouse

text: Protocols: Mesenteric lymph node cells were excised from mice that had been orally immunized with cholera toxin and then boosted 5 days before the experiment and single-cell solutions prepared. Antigen specific cells were identified using a CTB specific MHCII tetramer and were isolated via cell sorting into eppendorf tubes using a BD FACSAria cell sorter. Sorted cells were directly transferred from the tube to the 10X cartridge. 10XV1 10XV1

text: adult

text: wild type genotype

text: Pool 3 6 mice

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mesenteric lymph node

text: Mus musculus

text: mixed

text: Sample 7

characteristic: title


E-MTAB-11805:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11805:Sample 6

text: 10 to 20

text: ArrayExpress

text: CTB tetramer binding T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Pool 2 6 mice

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: mesenteric lymph node

text: Mus musculus

text: mixed

text: Oral immunization CT 7 days before

text: Sample 6


E-MTAB-11805:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11805:Sample 1

text: 10 to 20

text: ArrayExpress

text: CD3+ T cell

text: house mouse

text: adult

text: wild type genotype

text: Mouse 1

text: not applicable

text: Mus musculus

text: Mus musculus

text: mesenteric lymph node

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: No pretreatment

characteristic: stimulus

characteristic: strain

text: Sample 1


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collected by

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa, Western Cape

characteristic: geographic location

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Newport

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Northern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: strain


text: Anthony Smith

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: UH

text: public

characteristic: collection date

text: river water sample

text: river

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: river water

characteristic: environment (material)

text: Indonesia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: riverine metagenome

characteristic: organism

text: Antibiotic resistance in Indonesia

characteristic: project name

text: riverine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Control (500 m from Spring Water)

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: river water sample

characteristic: description

text: river

text: river

text: river water

text: Indonesia

text: metagenome

text: riverine metagenome

text: Antibiotic resistance in Indonesia

text: riverine metagenome

text: Illumina MiSeq

text: Impacted by animal farms (Cattle farm)

characteristic: title

text: water


text: UH

text: public

characteristic: Submitter Id

characteristic: collection date

text: river water sample

text: river

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: river water

characteristic: environment (material)

text: Indonesia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: riverine metagenome

text: Antibiotic resistance in Indonesia

text: riverine metagenome

text: Illumina MiSeq

text: Impacted by animal farms (Chicken slaughterhouse)

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

text: public

text: river water sample

text: river

text: river

text: river water

text: Indonesia

text: metagenome

characteristic: investigation type

text: riverine metagenome

characteristic: organism

text: Antibiotic resistance in Indonesia

characteristic: project name

text: riverine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Impacted by urban activities (Hospital)

text: water

characteristic: water environmental package


text: UH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: river water sample

characteristic: description

text: river

text: river

text: river water

text: Indonesia

text: metagenome

text: riverine metagenome

text: Antibiotic resistance in Indonesia

text: riverine metagenome

text: Illumina MiSeq

text: Impacted by urban activities (City)

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UH

text: public

text: river water sample

text: river

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: river water

characteristic: environment (material)

text: Indonesia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: riverine metagenome

text: Antibiotic resistance in Indonesia

text: riverine metagenome

text: Illumina MiSeq

text: Impacted by urban activities (City downstream)

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: river water sample

text: river

text: river

text: river water

text: Indonesia

text: metagenome

characteristic: investigation type

text: riverine metagenome

characteristic: organism

text: Antibiotic resistance in Indonesia

characteristic: project name

text: riverine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Estuary (river)

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: river water sample

characteristic: description

text: river

text: river

text: river water

text: Indonesia

text: metagenome

text: riverine metagenome

text: Antibiotic resistance in Indonesia

text: riverine metagenome

text: Illumina MiSeq

text: Estuary (seawater)

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:University of Innsbruck, Austria Salk Institute

text: ArrayExpress

characteristic: broker name

text: neuron

characteristic: cell type

text: human

characteristic: common name

text: Protocols: For RNA-Seq, total bulk RNA was extracted from flow cytometry-isolated iNs following 24 days of conversion. iNs were sorted based on the expression of the PSA-NCAM surface markers using PSA-NCAM-PE (Miltenyi). Sorting was performed at 4 °C directly into ice-cold Trizol LS reagent (ThermoFisher). Human fibroblasts were obtained from the UCSD Shiley-Marcos Alzheimer‘s disease research center (ADRC) and provided written informed consent. All procedures were approved by local human subjects committees. Fibroblasts were cultured in DMEM containing 15 % fetal bovine serum and 0.1 % non-essential amino acids at 37°C with 5 % CO2. They were transduced with a lentivirus pLVXUbC-rtTA-Ngn2:2A:Ascl1 (Addgene: #127289) and selected with puromycin (1 µg/ml) as previously described (Mertens et al., 2021). To initiate conversion, puromycin-selected fibroblasts were pooled 3:1 and, after 24 hours, medium was changed to neural conversion medium for three weeks. Neural conversion medium is based on DMEM:F12 and Neurobasal (1:1), supplemented with N2 supplement (1x, ThermoFisher), B27 supplement (1x, ThermoFisher), doxycycline (2 µg/ml, Sigma Aldrich), Laminin (1 µg/ml, Sigma Aldrich), dibutyryl-cyclic-AMP (100 µg/ml, Santa Cruz), human recombinant noggin (150 ng/ml, R&D), LDN-193189 (0.5 µM, Sanova Pharma), A83-1 (0.5 µM, Santa Cruz), CHIR99021 (3 µM, LC Laboratories), forskoling (5 µM, LC Laboratories) and SB-431542 (10 µM, MedChem). After two weeks of conversion, cells were treated for 10 days with shikonin (10 µM, ChemCruz) before FACS sorting and harvest of RNA in Trizol. RNA was extracted according to the manufacturer’s protocol, followed by TURBO DNase digestion (ThermoFisher). RNA integrity was assessed using the Bioanalyzer High Sensitivity RNA Analysis Kit (Agilent). A cDNA library was generated using the TruSeq Stranded mRNA Sample Preparation Kit (Illumina).

text: adult

characteristic: developmental stage

text: Alzheimer disease

characteristic: disease

text: somatic genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens


E-MTAB-11855:AD1 S

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Innsbruck, Austria Salk Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11855:AD1 S

text: ArrayExpress

text: neuron

text: human

text: adult

text: Alzheimer disease

text: somatic genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

text: AD1 S


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neuron

characteristic: cell type

text: human

characteristic: description

text: adult

text: familial Alzheimer disease

text: somatic genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

characteristic: title


E-MTAB-11855:AD11 S

text: public

text: E-MTAB-11855:AD11 S

text: ArrayExpress

text: neuron

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: familial Alzheimer disease

characteristic: disease

text: somatic genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: fibroblast

text: Homo sapiens

text: AD11 S


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: neuron

text: human

text: adult

text: Alzheimer disease

text: somatic genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens


E-MTAB-11855:AD2 S

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-11855:AD2 S

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neuron

characteristic: cell type

text: human

text: adult

text: Alzheimer disease

text: somatic genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

text: AD2 S


E-MTAB-11855:AD3 S

text: public

text: E-MTAB-11855:AD3 S

text: ArrayExpress

text: neuron

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer disease

characteristic: disease

text: somatic genotype

characteristic: genotype

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

text: AD3 S

characteristic: title


E-MTAB-11855:AD5 S

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11855:AD5 S

text: ArrayExpress

text: neuron

text: human

text: adult

text: Alzheimer disease

text: somatic genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: fibroblast

text: Homo sapiens

text: AD5 S


E-MTAB-11855:AD7 S

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11855:AD7 S

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neuron

text: human

text: adult

text: Alzheimer disease

text: somatic genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens

text: AD7 S


E-MTAB-11855:AD8 S

text: public

text: E-MTAB-11855:AD8 S

text: ArrayExpress

text: neuron

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer disease

characteristic: disease

text: somatic genotype

characteristic: genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

text: AD8 S


E-MTAB-11855:AD9 S

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11855:AD9 S

text: ArrayExpress

text: neuron

text: human

text: adult

text: Alzheimer disease

text: somatic genotype

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

text: AD9 S

characteristic: title


E-MTAB-11855:Control 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11855:Control 10

characteristic: Submitter Id

text: ArrayExpress

text: neuron

text: human

text: adult

text: normal

text: somatic genotype

text: Control 10

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: fibroblast

text: Homo sapiens

text: Control 10


E-MTAB-11855:Control 3

text: public

text: E-MTAB-11855:Control 3

text: ArrayExpress

characteristic: broker name

text: neuron

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: somatic genotype

text: Control 3

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens

text: Control 3


E-MTAB-11855:Control 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11855:Control 5

text: ArrayExpress

text: neuron

text: human

text: adult

text: normal

text: somatic genotype

characteristic: genotype

text: Control 5

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: fibroblast

text: Homo sapiens

text: Control 5


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

characteristic: collected by

characteristic: collection date

text: South Africa, North West

characteristic: geographic location

text: Human, Blood culture

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: description

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: University clinic Duesseldorf

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University clinic Duesseldorf

characteristic: Submitter Id

text: Center of Medical Microbiology, Virology, and Hospital Hygiene, University of Duesseldorf

characteristic: collecting institution

text: not collected

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Northrhine Westphalia; Duesseldorf metropolitan area

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIPH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

characteristic: broker name

characteristic: collection date

text: S. pyogenes

characteristic: common name

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

text: Homo sapiens

text: Blood

characteristic: isolation source

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: title


characteristic: External Id

text: NIPH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: Abscess

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collected by

text: South Africa, Free State

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collection date

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa

text: Human, Other

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: Typhi

characteristic: title


text: UNIBE-IG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: dog

characteristic: common name

text: English Springer Spaniel - female

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: English Springer Spaniel


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIBE-IG

text: public

text: dog

text: Labrador Retriever - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Labrador Retriever


characteristic: ENA-LAST-UPDATE

text: UNIBE-IG

text: public

text: dog

text: Labrador Retriever - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Labrador Retriever


text: UNIBE-IG

characteristic: INSDC center name

text: public

text: dog

text: Leonberger - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


text: UNIBE-IG

characteristic: INSDC first public

text: public

text: dog

text: Leonberger - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


text: UNIBE-IG

text: public

text: dog

text: Belgian Shepherd (Malinois) - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Belgian Shepherd (Malinois)


text: UNIBE-IG

text: public

text: dog

text: Belgian Shepherd (Malinois) - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Belgian Shepherd (Malinois)


text: UNIBE-IG

text: public

text: dog

text: Belgian Shepherd (Groenendael) - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Belgian Shepherd (Groenendael)


text: UNIBE-IG

text: public

text: dog

text: Hungarian Short-Haired Pointer (Vizsla) - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Hungarian Short-Haired Pointer (Vizsla)


text: UNIBE-IG

text: public

text: dog

text: Poodle - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Poodle


text: UNIBE-IG

text: public

text: dog

text: Saarlooswolfhund - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Saarlooswolfhund


text: UNIBE-IG

text: public

text: dog

text: Weimaraner - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Weimaraner


text: UNIBE-IG

text: public

text: dog

text: Miniature Schnauzer - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Miniature Schnauzer


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: South Africa, Limpopo

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


characteristic: External Id

text: UNIBE-IG

characteristic: INSDC last update

text: public

text: dog

text: Appenzeller Sennenhund - female

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Appenzeller Sennenhund


text: UNIBE-IG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: dog

text: Australian Shepherd - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Australian Shepherd

characteristic: title


text: UNIBE-IG

text: public

characteristic: Submitter Id

text: dog

characteristic: common name

text: Mixed breed - female

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Mixed breed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIBE-IG

text: public

text: dog

text: Mixed breed - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Mixed breed


text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: dog

text: Chihuahua

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Chihuahua


text: UNIBE-IG

text: public

text: dog

text: Labradoodle - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Labradoodle


text: UNIBE-IG

text: public

text: dog

text: Pitbull mix - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Pitbull mix


text: UNIBE-IG

text: public

text: dog

text: Shih Tzu - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Shih Tzu


text: UNIBE-IG

text: public

text: dog

text: Broholmer -male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Broholmer


text: UNIBE-IG

text: public

text: dog

text: Doberman Pinscher - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Doberman Pinscher


text: UNIBE-IG

text: public

text: dog

text: German Shepherd - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: German Shepherd


text: UNIBE-IG

text: public

text: dog

text: English Springer Spaniel - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: English Springer Spaniel


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

characteristic: collection date

text: South Africa, Limpopo

characteristic: geographic location

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica


characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

characteristic: description

text: South Africa, Limpopo

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae

characteristic: title