characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542180

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Kiritimatiellaeota bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Kiritimatiellaeota bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_SL__bin71


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542283

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

unit: DD

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: Candidatus Spyradenecus faecavium

characteristic: organism

text: MetaChick

text: Candidatus Spyradenecus faecavium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_S__bin172

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542220

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_DM__bin34


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542143

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallales bacterium

characteristic: organism

text: MetaChick

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_N__bin192

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542002,ERS4542003,ERS4542004,ERS4542005,ERS4542006,ERS4542007,ERS4542008,ERS4542009,ERS4542010,ERS4542011

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E0_DP__bin101


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542212,ERS4542213,ERS4542214,ERS4542215,ERS4542216,ERS4542217,ERS4542218,ERS4542219,ERS4542220,ERS4542221

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallales bacterium

characteristic: organism

text: MetaChick

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E02__bin388

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542072,ERS4542073,ERS4542074,ERS4542075,ERS4542076,ERS4542077,ERS4542078,ERS4542079,ERS4542080,ERS4542081

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E12__bin89


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542258

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallales bacterium

characteristic: organism

text: MetaChick

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_MD__bin55

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542312,ERS4542313,ERS4542314,ERS4542315,ERS4542316,ERS4542317,ERS4542318,ERS4542319,ERS4542320,ERS4542321

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E08__bin304


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542214

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallaceae bacterium

characteristic: organism

text: MetaChick

text: uncultured Victivallaceae bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_AG__bin40

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallaceae bacterium

text: MetaChick

characteristic: project name

text: ERS4542212,ERS4542213,ERS4542214,ERS4542215,ERS4542216,ERS4542217,ERS4542218,ERS4542219,ERS4542220,ERS4542221

characteristic: sample derived from

text: uncultured Victivallaceae bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E02__bin272


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542077

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallis sp.

characteristic: organism

text: MetaChick

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_FG__bin79

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542005

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallis sp.

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_NM__bin32


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallis sp.

characteristic: organism

text: MetaChick

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E02__bin296

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542182,ERS4542183,ERS4542184,ERS4542185,ERS4542186,ERS4542187,ERS4542188,ERS4542189,ERS4542190,ERS4542191

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallis sp.

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E24__bin120


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542052,ERS4542053,ERS4542054,ERS4542055,ERS4542056,ERS4542057,ERS4542058,ERS4542059,ERS4542060,ERS4542061

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: Victivallis lenta

characteristic: organism

text: MetaChick

text: Victivallis lenta

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E10__bin221

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542062

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallis sp.

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_L__bin78


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542144

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Victivallis sp.

characteristic: organism

text: MetaChick

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_AF__bin59

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542312,ERS4542313,ERS4542314,ERS4542315,ERS4542316,ERS4542317,ERS4542318,ERS4542319,ERS4542320,ERS4542321

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Victivallis sp.

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Victivallis sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E08__bin343


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542302,ERS4542303,ERS4542304,ERS4542305,ERS4542306,ERS4542307,ERS4542308,ERS4542309,ERS4542310,ERS4542311

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: Victivallis vadensis

characteristic: organism

text: MetaChick

text: Victivallis vadensis

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E07__bin296

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542202,ERS4542203,ERS4542204,ERS4542205,ERS4542206,ERS4542207,ERS4542208,ERS4542209,ERS4542210,ERS4542211

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E27__bin281


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: ERS4542202,ERS4542203,ERS4542204,ERS4542205,ERS4542206,ERS4542207,ERS4542208,ERS4542209,ERS4542210,ERS4542211

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E27__bin309

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542142

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_A__bin45


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542315

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_FD__bin43

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542212,ERS4542213,ERS4542214,ERS4542215,ERS4542216,ERS4542217,ERS4542218,ERS4542219,ERS4542220,ERS4542221

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E02__bin54


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542322,ERS4542323,ERS4542324,ERS4542325,ERS4542326,ERS4542327,ERS4542328,ERS4542329,ERS4542330,ERS4542331

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E09__bin38

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E27__bin283


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542006

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: Candidatus Merdousia gallistercoris

characteristic: organism

text: MetaChick

text: Candidatus Merdousia gallistercoris

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_NN__bin30

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542318

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_CN__bin113


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542183

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_SP__bin28

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542282,ERS4542283,ERS4542284,ERS4542285,ERS4542286,ERS4542287,ERS4542288,ERS4542289,ERS4542290,ERS4542291

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E05__bin89


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542325

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_GG__bin115

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542312,ERS4542313,ERS4542314,ERS4542315,ERS4542316,ERS4542317,ERS4542318,ERS4542319,ERS4542320,ERS4542321

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E08__bin216


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542156

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_RF__bin120

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4541998

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Spyradosoma merdigallinarum

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: Candidatus Spyradosoma merdigallinarum

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_NE__bin38


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542212,ERS4542213,ERS4542214,ERS4542215,ERS4542216,ERS4542217,ERS4542218,ERS4542219,ERS4542220,ERS4542221

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Opitutales bacterium

characteristic: organism

text: MetaChick

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: E02__bin69

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542132,ERS4542133,ERS4542134,ERS4542135,ERS4542136,ERS4542137,ERS4542138,ERS4542139,ERS4542140,ERS4542141

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Opitutales bacterium

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: E19__bin342


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542278

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: uncultured Verrucomicrobia bacterium

characteristic: organism

text: MetaChick

text: uncultured Verrucomicrobia bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_CI__bin11

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542323

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Akkermansia sp.

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: uncultured Akkermansia sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_AB__bin50


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: Candidatus Akkermansia intestinavium

characteristic: organism

text: MetaChick

text: Candidatus Akkermansia intestinavium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_CI__bin71

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542125

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Akkermansia intestinigallinarum

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_QD__bin125


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT default parameters

characteristic: binning parameters

text: MetaBAT v2.12.1

characteristic: binning software

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542086

characteristic: description

text: host-associated habitat

text: host-associated habitat

text: caecal content

text: France

text: Jouy-en-Josas

text: metagenome-assembled genome

text: chicken caecal content

text: chicken gut metagenome

text: Akkermansia muciniphila

characteristic: organism

text: MetaChick

text: Akkermansia muciniphila

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: BRZ_DI__bin80

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT default parameters

text: MetaBAT v2.12.1

text: BUSCO 5.2.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542277

text: host-associated habitat

characteristic: environment (biome)

text: host-associated habitat

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jouy-en-Josas

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

characteristic: isolation source

text: chicken gut metagenome

characteristic: metagenomic source

text: Blastocystis sp. subtype 6

text: MetaChick

characteristic: project name

characteristic: sample derived from

text: Blastocystis sp. subtype 6

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: BRZ_BR__eukbin11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Biozentrum, University of Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Biozentrum, University of Basel

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: For extraction of mouse peritoneal macrophage, we followed a previously described protocol. A total of 5 mice (3 from BALB/c and 2 from C57BL/6) were used for the study. In short, the mice were euthanized using CO2 as per the protocol validated by the ethics committee. The abdomen of the mouse was cleaned with 70% ethanol. A small incision was made at the outer skin of the peritoneum and the inner skin lining of the peritoneum was exposed. Five ml of ice-cold 3% fetal calf serum (FCS) in 1X PBS was injected into the cavity using a 27G needle. The peritoneum was gently massaged to dislodge the immune cells in the cavity. A 25G needle was used to collect the fluid and was placed in a sterile ice-cold tube on ice. The peritoneal lavage was centrifuged at 200g for 5 min, and resuspended in RPMI-1640 medium supplemented with 10% heat inactivated FCS. The cells were plated in a 10 cm plate at 37 degrees Celsius and 5% CO2. The plates were washed 3 times after 6 hours with 1X PBS supplemented with 3% FCS to remove the floating cells. The adherent cells were scraped and used for 10X Genomics Single cell transcriptomics library preparation. The abdomen of the mouse was cleaned with 70% ethanol. A small incision was made at the outer skin of the peritoneum and the inner skin lining of the peritoneum was exposed. 10X Genomics Single cell transcriptomics library preparation according to the manufacturer's protocol. 10X Genomics Single cell transcriptomics library preparation according to the manufacturer's protocol.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peritoneum

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: BALB/c

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Biozentrum, University of Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: macrophage

text: house mouse

text: adult

text: wild type genotype

text: not applicable

text: Mus musculus

text: Mus musculus

text: peritoneum

text: Mus musculus

text: male


text: Health Board of Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

tag: Namespace:Health Board of Estonia

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Heleri Inno

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

unit: years

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

characteristic: description

text: Estonia

text: Northern Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

text: Northern Estonia

characteristic: geographic location (region and locality)

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

text: Central Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Central Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: Western Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: Western Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Central Estonia

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: GATCGGAAGAGCACACGTCTGAACTCCAGTCAC[i7]ATCTCGTATGCCGTCTTCTGCTTG / AATGATACGGCGACCACCGAGATCTACAC[i5]ACACTCTTTCCCTACACGACGCTCTTCCGATCT

characteristic: adapters

text: SeBiMER

characteristic: broker name

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

text: not collected

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (45liter)

characteristic: isolation source

text: ATTACTCG-TCAGAGCC

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

text: water sample filtered on 20micrometers polycarbonate filter

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not collected

text: not applicable

text: Bay of Biscay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (35liter)

text: ATTACTCG-CTTCGCCT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

text: not collected

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (45liter)

characteristic: isolation source

text: ATTACTCG-TAAGATTA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: open bay

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: not applicable

text: Bay of Biscay

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (119liter)

text: ATTACTCG-ACGTCCTG

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: open bay

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: France

text: not collected

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bay of Biscay

text: metatranscriptome

characteristic: investigation type

text: sea water (241liter)

characteristic: isolation source

text: TCCGGAGA-AGGCTATA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (194liter)

text: TCCGGAGA-AGGATAGG

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (194liter)

characteristic: isolation source

text: TCCGGAGA-TCAGAGCC

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (93liter)

text: TCCGGAGA-CTTCGCCT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (137liter)

characteristic: isolation source

text: TCCGGAGA-TAAGATTA

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (83liter)

text: TCCGGAGA-ACGTCCTG

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (90liter)

characteristic: isolation source

text: TCCGGAGA-GTCAGTAC

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (480liter)

text: CGCTCATT-GCCTCTAT

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (380liter)

characteristic: isolation source

text: CGCTCATT-AGGATAGG

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (294liter)

text: CGCTCATT-TCAGAGCC

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Remedios2018_22_st222_070818_0000

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (48liter)

characteristic: isolation source

text: CGCTCATT-CTTCGCCT

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Illumina mRNA TruSeq Stranded Kit

characteristic: SRA accession

text: sample_Remedios2018_24_st222_070818_0405

characteristic: Submitter Id

characteristic: adapters

text: SeBiMER

characteristic: broker name

characteristic: collection date

text: seawater metagenome

characteristic: common name

text: coastal environment

characteristic: environment (biome)

text: ria

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: Spain

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: geographic location (region and locality)

text: metatranscriptome

text: sea water (68liter)

text: CGCTCATT-TAAGATTA

text: seawater metagenome

characteristic: organism

text: Illumina PCR Primer Cocktail

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

text: not applicable

text: not applicable

text: phytoplankton community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Illumina mRNA TruSeq Stranded Kit

text: sample_Remedios2018_26_st222_070818_0800

text: SeBiMER

text: seawater metagenome

text: coastal environment

text: ria

text: water

characteristic: environmental package

text: Yes

characteristic: environmental sample

text: Spain

characteristic: geographic location (depth)

text: not applicable

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: sea water (187liter)

characteristic: isolation source

text: CGCTCATT-ACGTCCTG

characteristic: multiplex identifiers

text: seawater metagenome

text: Illumina PCR Primer Cocktail

characteristic: pcr primers

characteristic: project name

characteristic: sample description

characteristic: sample name

text: seawater metagenome

text: Sequencing by synthesis (Illumina)

characteristic: sequencing method

text: not applicable

characteristic: target gene

text: not applicable

characteristic: target subfragment

text: phytoplankton community