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characteristic: collection date

text: not provided

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text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Offaly

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

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text: Oro-Nasopharyngeal swab

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text: National Virus Reference Laboratory

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

unit: DD

characteristic: geographic location (latitude)

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text: Europe / Ireland / Offaly

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characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Roscommon

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text: Europe / Ireland / Sligo

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text: Europe / Ireland / Tipperary

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text: Europe / Ireland / Waterford

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text: hCoV-19/Ireland/WD-NVRL-S22IRL00356425/2022

characteristic: virus identifier


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text: Europe / Ireland / Waterford

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characteristic: geographic location (latitude)

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text: Europe / Ireland / Waterford

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text: hCoV-19/Ireland/WD-NVRL-S22IRL00356419/2022

characteristic: virus identifier


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text: Europe / Ireland / Waterford

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characteristic: geographic location (latitude)

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text: Europe / Ireland / Westmeath

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text: hCoV-19/Ireland/WH-NVRL-S22IRL00370341/2022

characteristic: virus identifier


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text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: organism

text: hCoV-19/Ireland/WH-NVRL-S22IRL00356319/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wicklow

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: sample capture status

text: hCoV-19/Ireland/WW-NVRL-S22IRL00356041/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wicklow

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: hCoV-19/Ireland/WW-NVRL-S22IRL00356805/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356900/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356904/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00357173/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00357171/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356907/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356917/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00357184/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: not provided

characteristic: host subject id

text: not applicable

characteristic: isolate

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356910/2022

characteristic: title


characteristic: ENA-CHECKLIST

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

text: not applicable

text: Oro-Nasopharyngeal swab

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00356916/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Norwegian Institute of Public Health (NIPH)

text: Mona Holberg-Petersen, Lise Andresen, Cathrine Fladeby, Mariann Nilsen, Teodora Plamenova Ribarska, Pål Marius Bjørnstad, Gregor D. Gilfillan, Arvind Yegambaram Meenakshi Sundaram, Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Pedersen Benedikte Nevjen, Line Victoria Moen, Rasmus Riis Kopperud, Hilde Vollan, Olav Hungnes, Karoline Bragstad

characteristic: authors

text: ELIXIR-Norway

text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Norwegian Institute of Public Health (NIPH)

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: not provided

text: Norway

text: Oslo

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Vestfold og Telemark

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELIXIR-Norway

text: not provided

text: Norway

text: Viken

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: authors

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Norway

text: Vestland

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELIXIR-Norway

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Agder

characteristic: geographic location (region and locality)

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: External Id

text: University clinic Duesseldorf

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:University clinic Duesseldorf

characteristic: Submitter Id

text: ZOTZ KLIMAS MVZ Düsseldorf-Centrum GbR ÜBAG für Labormedizin, Genetik, Zytologie, Pathologie

text: not collected

text: Germany

text: Northrhine Westphalia; Duesseldorf metropolitan area

text: human

text: not collected

text: homo sapien

text: not collected

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

text: not provided

text: Norway

text: Trondelag

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2


characteristic: External Id

text: CAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: crimson-patched longwing

characteristic: common name

text: Thorax DNA Extract

characteristic: description

text: Adult

characteristic: dev stage

text: Heliconius erato

text: Heliconius erato

text: Thorax

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GSC

text: public

characteristic: Submitter Id

text: France

characteristic: geographic location (country and/or sea)

text: Devèze, Cantal

characteristic: geographic location (region and locality)

text: Silene nutans

characteristic: organism

text: Silene nutans


characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Troms og Finnmark

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUT PASTEUR

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


AB 005 FO A1

characteristic: External Id

text: INSTITUT PASTEUR

text: public

text: AB 005 FO A1

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: AB 005 FO A1


AB 005 RA A1

text: INSTITUT PASTEUR

text: public

text: AB 005 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: AB 005 RA A1


AB 006 FO A3

text: INSTITUT PASTEUR

text: public

text: AB 006 FO A3

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: AB 006 FO A3


MC 025 FO A1

text: INSTITUT PASTEUR

text: public

text: MC 025 FO A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 025 FO A1


MC 025 FO A2

text: INSTITUT PASTEUR

text: public

text: MC 025 FO A2

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 025 FO A2


MC 025 RA A1

text: INSTITUT PASTEUR

text: public

text: MC 025 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 025 RA A1


MC 025 RA A3

text: INSTITUT PASTEUR

text: public

text: MC 025 RA A3

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 025 RA A3


MC 048 RA A1

text: INSTITUT PASTEUR

text: public

text: MC 048 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 048 RA A1


MC 053 RA A1

text: INSTITUT PASTEUR

text: public

text: MC 053 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 053 RA A1


MC 054 FO A1

text: INSTITUT PASTEUR

text: public

text: MC 054 FO A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 054 FO A1


MC 071 FO A1

text: INSTITUT PASTEUR

text: public

text: MC 071 FO A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 071 FO A1


MC 071 FO B5

text: INSTITUT PASTEUR

text: public

text: MC 071 FO B5

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 071 FO B5


MC 071 RA A2

text: INSTITUT PASTEUR

text: public

text: MC 071 RA A2

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 071 RA A2


MC 071 RA B1

text: INSTITUT PASTEUR

text: public

text: MC 071 RA B1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MC 071 RA B1


MY 100 FO A1

text: INSTITUT PASTEUR

text: public

text: MY 100 FO A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 100 FO A1


MY 100 RA B2

text: INSTITUT PASTEUR

text: public

text: MY 100 RA B2

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 100 RA B2


MY 101 RA A1

text: INSTITUT PASTEUR

text: public

text: MY 101 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 101 RA A1


MY 102 RA A1

text: INSTITUT PASTEUR

text: public

text: MY 102 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 102 RA A1


MY 213 RA A1

text: INSTITUT PASTEUR

text: public

text: MY 213 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 213 RA A1


MY 218 FO A2

text: INSTITUT PASTEUR

text: public

text: MY 218 FO A2

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 218 FO A2


MY 300 FO A2

text: INSTITUT PASTEUR

text: public

text: MY 300 FO A2

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 300 FO A2


MY 302 RA A1

text: INSTITUT PASTEUR

text: public

text: MY 302 RA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 302 RA A1


MY 305 FO A1

text: INSTITUT PASTEUR

text: public

text: MY 305 FO A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 305 FO A1


MY 365 SE B4

text: INSTITUT PASTEUR

text: public

text: MY 365 SE B4

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 365 SE B4


MY 373 FO A3

text: INSTITUT PASTEUR

text: public

text: MY 373 FO A3

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 373 FO A3


MY 375 SA A1

text: INSTITUT PASTEUR

text: public

text: MY 375 SA A1

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: MY 375 SA A1


characteristic: GISAID Accession ID

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ELIXIR-Norway

text: not provided

text: Norway

text: Viken

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: authors

text: ELIXIR-Norway

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Trondelag

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ELIXIR-Norway

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Vestfold og Telemark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: authors

text: ELIXIR-Norway

text: not provided

text: Norway

text: Rogaland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: description

text: Dianthus sylvestris

characteristic: organism

text: Dianthus sylvestris


characteristic: External Id

text: AALBORG UNIVERSITY

text: public

characteristic: INSDC status

tag: Namespace:AALBORG UNIVERSITY

text: Intestinal microbiota from trout

text: metagenome

text: metagenome


text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NATURAL HISTORY MUSEUM

characteristic: barcoding center

text: COPO

characteristic: broker name

text: ALEXANDRA NORTH

characteristic: collected by

text: PLYMOUTH UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: palmate newt

characteristic: common name

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: England | Dartmoor | Princetown

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: ALEXANDRA NORTH

characteristic: identified by

text: PLYMOUTH UNIVERSITY

text: not collected

characteristic: lifestage

text: Lissotriton helveticus

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Lissotriton helveticus

text: MALE

characteristic: sex

characteristic: specimen id

text: Not Applicable

characteristic: specimen voucher

text: 6992d9e2-9e03-4cd2-a794-21d36d2d4550-DTOL-specimen

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NATURAL HISTORY MUSEUM

characteristic: barcoding center

text: COPO

characteristic: broker name

text: MARK WILKINSON

characteristic: collected by

text: NATURAL HISTORY MUSEUM

text: common newt

text: United Kingdom

text: England |Penge

text: NOT COLLECTED

text: MARK WILKINSON

text: NATURAL HISTORY MUSEUM

text: not collected

text: Lissotriton vulgaris

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Lissotriton vulgaris

text: FEMALE

text: Not Applicable

text: d4808397-ecba-402a-aa37-e0419e84657b-DTOL-specimen

characteristic: title


characteristic: GISAID Accession ID

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Agder

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FZB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: WGS of M. tuberculosis compleyx strains from Namibia

characteristic: description

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: Spital Dornach, Dornach, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Christian Beisel, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler, Tim Roloff, Fanny Wegner, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-18r4lr1/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-3orylo6/2022

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-j63r895/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-08rel18/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-7njw8yl/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-j63r2ok/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-mn4rvd8/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-ETHZ-mn4rv0v/2022

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-mn4r0or/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-wx0lm5p/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-08rek97/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-o9yjm4x/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-28r2l0k/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: University Psychiatric Clinics Basel, Basel, Switzerland

text: Christian Beisel, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler, Tim Roloff, Fanny Wegner, Hans Hirsch, Adrian Egli

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-1n92ld4/2022

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-xlv8erp/2022

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-7njwlkx/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-28r2vnk/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-nm2dx00/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BL

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-mn4rv6v/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-5xr6jyd/2022

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-93jnyed/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-wx0lmk5/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-l8vrwx5/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-o9yjmww/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-28r2v0k/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-r8pd92x/2022

characteristic: isolate


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Christian Beisel, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler, Tim Roloff, Fanny Wegner, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-65jpldk/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Norwegian Institute of Public Health (NIPH)

text: public

characteristic: INSDC status

text: Mona Holberg-Petersen, Lise Andresen, Cathrine Fladeby, Mariann Nilsen, Teodora Plamenova Ribarska, Pål Marius Bjørnstad, Gregor D. Gilfillan, Arvind Yegambaram Meenakshi Sundaram, Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Pedersen Benedikte Nevjen, Line Victoria Moen, Rasmus Riis Kopperud, Hilde Vollan, Olav Hungnes, Karoline Bragstad

characteristic: authors

text: ELIXIR-Norway

text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

text: not provided

text: Norway

text: Oslo

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolation source host associated

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-nm2dxoo/2022

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-7njw8d3/2022


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-nm2dejl/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Spital Dornach, Dornach, Switzerland

text: Switzerland

text: SO

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SO-ETHZ-65jpljo/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-xlv8mer/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-j63r925/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-xlv8m3o/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Vestfold og Telemark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-65jpxdk/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

text: Felix-Platter Spital, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-ETHZ-jlvj85m/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Christian Beisel, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler, Tim Roloff, Fanny Wegner, Hans Hirsch, Adrian Egli

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-o9yj8dw/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Basel

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-yv2nm36/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Norwegian Institute of Public Health (NIPH)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Mona Holberg-Petersen, Lise Andresen, Cathrine Fladeby, Mariann Nilsen, Teodora Plamenova Ribarska, Pål Marius Bjørnstad, Gregor D. Gilfillan, Arvind Yegambaram Meenakshi Sundaram, Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Pedersen Benedikte Nevjen, Line Victoria Moen, Rasmus Riis Kopperud, Hilde Vollan, Olav Hungnes, Karoline Bragstad

characteristic: authors

text: ELIXIR-Norway

text: Oslo University Hospital, Department of Microbiology ; P.O.Box 4956 Nydalen, N-0424 Oslo, Norway

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Agder

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Viken

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: CAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Heliconius erato lativitta

characteristic: common name

text: Thorax DNA extract

characteristic: description

text: Heliconius erato lativitta

characteristic: organism

text: Heliconius erato lativitta

text: Thorax

characteristic: tissue type

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CAM

text: public

text: crimson-patched longwing

text: Thorax DNA extract

text: Heliconius erato

text: Heliconius erato

text: Thorax


characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: authors

text: ELIXIR-Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ELIXIR-Norway

characteristic: broker name

text: not provided

text: Norway

characteristic: geographic location (country and/or sea)

text: Troms og Finnmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: authors

text: ELIXIR-Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

text: Innlandet

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Laboratory of Molecular Infection Medicine Sweden (MIMS), Umea university

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: bronchial epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Primary human bronchial epithelial cells (HBEC) were isolated with informed consent from lung tissue from of patients who underwent thoracic surgery. HBEC were grown in Bronchial Epithelial Cell Medium (BEpiCM, SC3211-b, SienCell) with recommended supplements (SC3262, SienCell) and 100 U PeSt. For differentiation 0.75 x105 cells were seeded onto a 6.5 mm semipermeable transwell insert (0.4 µm Pore Polyester Membrane Insert, Corning) in differentiation media (DMEM:BEpiCM 1:1 supplemented with 52 μg/ml bovine pituitary extract, 0.5 μg/ml hydrocortisone, 0.5 ng/ml human recombinant epidermal growth factor, 0.5 μg/ml epinephrine, 10 μg/ml transferrin, 5 μg/ml insulin, 50 nM retinoic acid (all from Sigma Aldrich) and PeSt according to (doi: 10.1152/ajplung.00311.2001. PubMed PMID: 11792627). Cells were maintained submerged for the first 7 days, after which the media was removed from the apical side and cells were grown at air-liquid interface for an additional two weeks to reach full differentiation. Media was replaced three times per week with addition of fresh retinoic acid to the media shortly before usage. Immediately prior to infection the apical side of the HBEC ALI cultures was rinsed three times with PBS. For infection, 1.5x104 PFU of SARS-CoV-2 in a total volume of 100 µl infection medium (DMEM + 100 U PeSt) was added to the apical compartment, corresponding to an approximate MOI of 0.05. Cells were incubated at 37 °C and 5 % CO2 for 2.5 h before the inoculum was removed and the cells washed with PBS to remove residual medium. According to the 10x single-cell protocol. Uninfected samples we handled according to the standard 10x protocol while infected samples underwent the methanol fixation protocol CG000136_Demonstrated_Protocol_MethanolFixationCells_RevE.pdf as provided by 10x genomics. According to the 10x single-cell protocol

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: infect

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: mix

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Molecular Infection Medicine Sweden (MIMS), Umea university

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: bronchial epithelial cell

text: human

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: mix

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: bronchial epithelial cell

characteristic: cell type

text: human

text: adult

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: mix


text: public

tag: Namespace:INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

text: house mouse

characteristic: common name

text: Mus musculus bone marrow-derived macrophages, TENT5A Flox/Flox TENT5C KO, direct RNA sequencing, biological replicate 1

characteristic: description

text: Mus musculus

text: Mus musculus


text: INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

text: public

text: house mouse

text: Mus musculus bone marrow-derived macrophages, TENT5A Flox/Flox TENT5C KO, direct RNA sequencing, biological replicate 2

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Mus musculus, bone marrow-derived macrophages, WT, direct RNA sequencing, biological replicate 1

text: Mus musculus

text: Mus musculus

text: Mus musculus bone marrow-derived macrophages, WT, direct RNA sequencing, biological replicate 1


text: public

text: house mouse

text: Mus musculus, bone marrow-derived macrophages, WT, direct RNA sequencing, biological replicate 2

text: Mus musculus

text: Mus musculus

text: Mus musculus bone marrow-derived macrophages, WT, direct RNA sequencing, biological replicate 2


characteristic: GISAID Accession ID

text: public

characteristic: authors

text: ELIXIR-Norway

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Norway

characteristic: geographic location (country and/or sea)

text: Vestfold og Telemark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate