text: Dicrocoelium dendriticum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Dicrocoelium dendriticum

text: Dicrocoelium dendriticum

text: Dicrocoelium dendriticum

text: Dicrocoelium dendriticum


status: PUBLIC

text: Schistosoma guineensis

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Schistosoma guineensis

characteristic: common name

text: Schistosoma guineensis

characteristic: organism

text: Schistosoma guineensis

text: Schistosoma guineensis

characteristic: title


text: Schistosoma spindale

text: SC

text: public

text: Schistosoma spindale

text: Schistosoma spindale

text: Schistosoma spindale

text: Schistosoma spindale


text: Heterobilharzia americana

text: SC

text: public

text: Heterobilharzia americana

text: Heterobilharzia americana

text: Heterobilharzia americana


text: Schistosoma intercalatum

text: SC

text: public

text: Schistosoma intercalatum

text: Schistosoma intercalatum

text: Schistosoma intercalatum

text: Schistosoma intercalatum


text: SAHMRI

text: public

characteristic: collection date

text: human

text: Rectal swabs

characteristic: description

text: Hospital

characteristic: environment (biome)

text: Rectal

characteristic: environment (feature)

text: Swab

characteristic: environment (material)

text: Myanmar

characteristic: geographic location (country and/or sea)

text: 16.9042� N

unit: DD

characteristic: geographic location (latitude)

text: 96.0997� E

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Shotgun metagenomics

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SAHMRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Rectal swabs

text: Hospital

text: Rectal

text: Swab

text: Myanmar

text: 16.9042� N

text: 96.0997� E

text: human-gut

text: metagenome

text: Homo sapiens

text: Homo sapiens

text: 16S rRNA gene amplicon sequencing


text: public

tag: Namespace:GFZ German Research Centre for Geosciences

characteristic: Submitter Id

characteristic: collection date

text: desert

characteristic: environment (biome)

text: alkaline flat

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

characteristic: environmental package

text: Chile

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Yungay valley, Región de Antofagasta, Chile

characteristic: geographic location (region and locality)

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: 515F (GTGYCAGCMGCCGCGGTAA) 806R (GGACTACNVGGGTWTCTAAT)

characteristic: pcr primers

text: soil metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300bp

text: bacteria and archaea

characteristic: subspecific genetic lineage

text: 16S rRNA

characteristic: target gene

text: 16S V4

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: desert

text: alkaline flat

text: soil

text: soil

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: sediment

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: bacteria and archaea

text: 16S rRNA

text: 16S V4


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

tag: Namespace:CENTER FOR GENOMIC REGULATION (CRG)

characteristic: Submitter Id

text: zebrafish

characteristic: common name

characteristic: description

text: Danio rerio

characteristic: organism

text: Danio rerio


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Medical University of Vienna

text: public

tag: Namespace:Medical University of Vienna

text: Medical University of Vienna

text: human

text: Austria

text: lung tansplantation

characteristic: host disease status

text: homo sapiens

characteristic: host scientific name

text: bronchoalveolar lavage fluid

characteristic: isolate

text: lung

characteristic: isolation source host-associated

text: Homo sapiens

text: Homo sapiens

text: 16s rRNA amplicons from human bronchoalveolar lavage

characteristic: title


characteristic: External Id

text: Medical University of Vienna

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Medical University of Vienna

text: human

text: Austria

characteristic: geographic location (country and/or sea)

text: lung transplantation

text: homo sapiens

text: bronchoalveolar lavage fluid

text: lung

text: Homo sapiens

text: Homo sapiens


text: QUEEN'S UNIVERSITY BELFAST

text: public

tag: Namespace:QUEEN'S UNIVERSITY BELFAST

characteristic: Submitter Id

characteristic: collection date

text: laboratory

characteristic: environment (biome)

text: laboratory

characteristic: environment (feature)

text: liquid

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: metagenome

text: DNA controls

characteristic: project name

text: metagenome

text: Ilumina Miseq

characteristic: sequencing method

text: Controls


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: QUEEN'S UNIVERSITY BELFAST

characteristic: INSDC center name

text: public

text: ZymoBIOMICS

text: ZymoBIOMICS

text: liquid

text: United Kingdom

text: host-associated

text: metagenome

characteristic: organism

text: DNA controls

text: metagenome

text: Ilumina Miseq

text: Controls

characteristic: title


text: QUEEN'S UNIVERSITY BELFAST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: laboratory

text: environmental

text: liquid

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: DNA controls

text: metagenome

text: Ilumina Miseq

text: Controls


Rumen fluid#1

text: VETERINARY MEDICINE UNIVERSITY

text: public

text: Rumen fluid#1

text: Illumina adapters

characteristic: adapters

text: ruminal fluid#animal1

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

unit: centuries

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

text: 95ºC for 3 minutes, 20 cycles at 95ºC for 30 seconds, 55ºC for 30 seconds, 72ºC for 30 seconds and then 72ºC for 5 minutes.

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

unit: °C

characteristic: sample storage temperature

unit: g

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#2

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal2

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: SD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#3

text: Illumina adapters

text: ruminal fluid#animal3

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#4

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal4

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: SD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#5

text: Illumina adapters

text: ruminal fluid#animal5

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#6

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal6

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#7

text: Illumina adapters

text: ruminal fluid#animal7

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#8

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal8

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: O

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#9

text: Illumina adapters

text: ruminal fluid#animal9

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: FD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#10

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal10

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: C

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#11

text: Illumina adapters

text: ruminal fluid#animal11

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#12

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal12

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#13

text: Illumina adapters

text: ruminal fluid#animal13

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

text: 95ºC for 3 minutes, 20 cycles at 95ºC for 30 seconds, 55ºC for 30 seconds, 72ºC for 30 seconds and then 72ºC for 5 minutes.\

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#14

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal14

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#15

text: Illumina adapters

text: ruminal fluid#animal15

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: FD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#16

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal16

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: O

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#17

text: Illumina adapters

text: ruminal fluid#animal17

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#18

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal18

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#19

text: Illumina adapters

text: ruminal fluid#animal19

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#20

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal20

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: C

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#21

text: Illumina adapters

text: ruminal fluid#animal21

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#22

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal22

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: C

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#23

text: Illumina adapters

text: ruminal fluid#animal23

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#24

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal24

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#25

text: Illumina adapters

text: ruminal fluid#animal25

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#26

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal26

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: O

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Rumen fluid#27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rumen fluid#27

text: Illumina adapters

text: ruminal fluid#animal27

text: rumen

text: GIT

text: ruminal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Rumen fluid#28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rumen fluid#28

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: ruminal fluid#animal28

characteristic: description

text: rumen

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: ruminal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: SD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#1

text: Illumina adapters

text: lower intestine content#animal1

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#2

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal2

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: SD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#3

text: Illumina adapters

text: lower intestine content#animal3

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#4

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal4

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: SD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#5

text: Illumina adapters

text: lower intestine content#animal5

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#6

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal6

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#7

text: Illumina adapters

text: lower intestine content#animal7

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#8

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal8

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: O

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#9

text: Illumina adapters

text: lower intestine content#animal9

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: FD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#10

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal10

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: C

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#11

text: Illumina adapters

text: lower intestine content#animal11

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#12

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal12

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#13

text: Illumina adapters

text: lower intestine content#animal13

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: O

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#14

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal14

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#15

text: Illumina adapters

text: lower intestine content#animal15

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: FD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#16

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal16

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: O

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#17

text: Illumina adapters

text: lower intestine content#animal17

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#18

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal18

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#19

text: Illumina adapters

text: lower intestine content#animal19

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#20

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal20

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: C

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#21

text: Illumina adapters

text: lower intestine content#animal21

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#22

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal22

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: C

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#23

text: Illumina adapters

text: lower intestine content#animal23

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#24

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal24

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: FD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#25

text: Illumina adapters

text: lower intestine content#animal25

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: SD

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#26

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal26

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: O

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Lower intestine fluid#27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lower intestine fluid#27

text: Illumina adapters

text: lower intestine content#animal27

text: lower intestine

text: GIT

text: intestinal fluid

text: Portugal

characteristic: geographic location (longitude)

text: Santarém

characteristic: geographic location (region and locality)

text: 6 months

characteristic: host age

text: white

characteristic: host color

text: sheep

characteristic: host common name

text: C

characteristic: host diet

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Lower intestine fluid#28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lower intestine fluid#28

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: lower intestine content#animal28

characteristic: description

text: lower intestine

characteristic: environment (biome)

text: GIT

characteristic: environment (feature)

text: intestinal fluid

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Santarém

text: 6 months

text: white

text: sheep

text: SD

text: male

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Negative control#1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Negative control#1

text: Illumina adapters

text: Lab environment

text: liquid

text: PBS

text: United Kingdom

characteristic: geographic location (longitude)

text: Belfast

characteristic: geographic location (region and locality)

characteristic: host age

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

text: 5 μL

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Negative control#2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Negative control#2

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

characteristic: description

text: Lab environment

characteristic: environment (biome)

text: Liquid

characteristic: environment (feature)

text: PBS

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Belfast

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: 5 μL

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


Negative control#3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Negative control#3

text: Illumina adapters

text: Molecular water#control3

text: Lab environment

text: Liquid

text: Molecular water

text: United Kingdom

characteristic: geographic location (longitude)

text: Belfast

characteristic: geographic location (region and locality)

characteristic: host age

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: PCR

characteristic: nucleic acid amplification

text: Fast DNA SPIN Kit for Soil

characteristic: nucleic acid extraction

text: metagenome

characteristic: pcr conditions

text: 515F and 806R

characteristic: pcr primers

characteristic: sample storage temperature

text: 5 μL

characteristic: sample volume or weight for DNA extraction

text: metagenome

text: Illumina Miseq

text: 16S: V4- 250 bp

characteristic: target gene


Positive control

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VETERINARY MEDICINE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Positive control

characteristic: Submitter Id

text: Illumina adapters

characteristic: adapters

characteristic: collection date

text: D6300 ZymoBIOMICS Microbial Community Standard

characteristic: description

text: Lab environment

characteristic: environment (biome)

text: Liquid

characteristic: environment (feature)

text: comercial mock community

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Belfast

text: host-associated

text: metagenome

text: PCR

text: Fast DNA SPIN Kit for Soil

text: metagenome

characteristic: organism

text: 515F and 806R

characteristic: project name

text: 5 μL

text: metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S: V4- 250 bp

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medical University of Vienna

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Medical University of Vienna

text: human

characteristic: common name

text: Austria

text: lung transplantation

characteristic: host disease status

text: homo sapiens

characteristic: host scientific name

text: bronchoalveolar lavage fluid

characteristic: isolate

text: lung

characteristic: isolation source host-associated

text: Homo sapiens

text: Homo sapiens


text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: description

text: Danio rerio

text: Danio rerio


text: Bioinformatics Group

text: public

tag: Namespace:Bioinformatics Group

text: Regulation of cell division in archaea: the small protein CdrS promotes cell division and controls multiple genes in Haloferax volcanii

text: Haloferax volcanii DS2

characteristic: organism

text: Haloferax volcanii DS2

text: Sample A small protein regulates cell division

characteristic: title


16S profile from BPR1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Microbiomas Foundation

text: public

text: 16S profile from BPR1

tag: Namespace:Microbiomas Foundation

text: environmental system

characteristic: broad-scale environmental context

characteristic: collection date

text: 16S targeted sequencing from biochemical passive reactors treating acid mine drainage

text: soil

characteristic: environmental medium

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: environmental system

characteristic: local environmental context

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: bacterium

text: Taxonomical composition of microbiomes from BPR treating AMD

characteristic: project name

text: bacterium

text: Illumina

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Pavlova lutheri

text: Pavlova lutheri


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC

text: public

text: Pycnococcus provasolii

characteristic: organism

text: Pycnococcus provasolii


text: GSC

text: public

text: Picochlorum sp. RCC289

text: Picochlorum sp. RCC289


text: GSC

text: public

text: Picochlorum sp. RCC475

text: Picochlorum sp. RCC475


text: GSC

text: public

text: Porphyridium purpureum

text: Porphyridium purpureum


text: GSC

text: public

text: Triparma pacifica

text: Triparma pacifica


text: GSC

text: public

text: Nannochloropsis gaditana

text: Nannochloropsis gaditana


text: GSC

text: public

text: Thoracosphaera heimii

text: Thoracosphaera heimii


text: GSC

text: public

text: Chloropicon sieburthii

text: Chloropicon sieburthii


E-MTAB-9364:Sample 3

text: public

text: E-MTAB-9364:Sample 3

tag: Namespace:The Westmead Clinical School, Faculty of Medicine and Health, University of Sydney, Sydney, Australia

text: ArrayExpress

characteristic: broker name

text: Protocols: CFA/I-positive strain H10407 was grown under different in vitro conditions to reach the early exponential growth phase (OD600 = 0.4). For water survival, H10407 was suspended in a water to a final concentration of 1 × 10(6) cfu/mL and incubated at room temperature without shaking for 48 h . RNA was extracted using the RNeasy Mini Kit (Qiagen, Hilden, Germany). Ribosomal RNA was depleted using Invitrogen’s RiboMinus Prokaryotic Kit (Invitrogen Inc.) and contaminating DNA was removed using RNase-free DNase (Invitrogen Inc.). The cDNA libraries were prepared using Illumina TruSeq RNA sample preparation kit

characteristic: description

text: aerobic culturing (acidic media, pH5)

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

characteristic: phenotype

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

characteristic: strain

text: Sample 3

characteristic: title


E-MTAB-9364:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Westmead Clinical School, Faculty of Medicine and Health, University of Sydney, Sydney, Australia

text: public

text: E-MTAB-9364:Sample 4

text: ArrayExpress

text: aerobic culturing (acidic media, pH5)

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 4


E-MTAB-9364:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9364:Sample 5

text: ArrayExpress

text: aerobic culturing (alkaline media, pH9)

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 5


E-MTAB-9364:Sample 6

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9364:Sample 6

text: ArrayExpress

text: aerobic culturing (alkaline media, pH9)

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 6


E-MTAB-9364:Sample 2

text: public

characteristic: SRA accession

text: E-MTAB-9364:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: aerobic culturing (neutral media, pH7)

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 2


E-MTAB-9364:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-9364:Sample 1

text: ArrayExpress

text: aerobic culturing (neutral media. pH7)

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 1


E-MTAB-9364:Sample 7

text: public

text: E-MTAB-9364:Sample 7

text: ArrayExpress

characteristic: broker name

text: anaerobic culturing (neutral media, pH7)

text: not applicable

text: Escherichia coli ETEC H10407

characteristic: organism

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 7


E-MTAB-9364:Sample 8

text: public

text: E-MTAB-9364:Sample 8

text: ArrayExpress

characteristic: description

characteristic: growth condition

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 8


E-MTAB-9364:Sample 10

text: public

text: E-MTAB-9364:Sample 10

text: ArrayExpress

text: water survival (48 hr)

text: not applicable

characteristic: isolate

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

characteristic: phenotype

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

text: Sample 10


E-MTAB-9364:Sample 9

text: public

text: E-MTAB-9364:Sample 9

text: ArrayExpress

text: water survival (48 hr)

text: not applicable

text: Escherichia coli ETEC H10407

text: Escherichia coli ETEC H10407

text: CFA/I expressing ETEC

text: Escherichia coli ETEC H10407

text: ETEC str H10407 (O78:H11)

characteristic: strain

text: Sample 9

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FUBB

text: public

characteristic: collection date

text: soil

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Madagascar

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: I like the way you eat it: Lemur (Indri indri) gut mycobiome and geophagy

characteristic: project name

text: metagenome

text: illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2031

characteristic: common name

text: A SARS-CoV-2 specific multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

text: not collected

characteristic: geographic location (region and locality)

characteristic: gisaid id

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: ReCoDID COVID-19 pilot study

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: sample derived from

text: Dutch COVID-19 response sample sequencing

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2032

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not collected

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

text: ReCoDID COVID-19 pilot study

characteristic: project name

characteristic: title


text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2033

characteristic: common name

characteristic: description

text: Netherlands

text: not collected

characteristic: geographic location (region and locality)

characteristic: gisaid id

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: organism

text: ReCoDID COVID-19 pilot study

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2037

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not collected

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

text: ReCoDID COVID-19 pilot study

characteristic: project name

characteristic: sample derived from


text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2040

characteristic: common name

characteristic: description

text: Netherlands

text: not collected

characteristic: geographic location (region and locality)

characteristic: gisaid id

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: organism

text: ReCoDID COVID-19 pilot study

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2041

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not collected

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

text: ReCoDID COVID-19 pilot study

characteristic: project name

characteristic: sample capture status