characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Wallenberg Centre for Molecular Medicine, Linkoping University, Sweden; Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology; Faculty of Medicine and Health Sciences; Linkoping University, Sweden

text: ArrayExpress

characteristic: cell line

text: kidney epithelial cell

characteristic: cell type

text: human

text: Protocols: 500,000 cells were harvested using TrypLE (Cat. #12604013, Gibco). Human embryonic kidney 293T cells (HEK293T) were cultured at 37 °C in a humidified incubator with 5% CO2. Cells were cultured in high glucose Dulbecco’s Modified Eagle Medium (Cat. #41965039, Gibco) supplemented with 10 % bovine calf serum (Cat. #1233C, Sigma-Aldrich) and 1X Penicillin-Streptomycin (Cat. #15140148, Gibco). HEK293T cells were cultured in media containing 10 µM CHIR99021, a GSK-3 inhibitor, (Cat. #SML1046, Sigma Aldrich) for 24 hr. Cells were washed three times in Nuclear Extraction (NE) buffer (HEPES-KOH pH-8.2 [20 mM], KCl [10 mM], Spermidine [0.5 mM], IGEPAL [0.05%], Glycerol [20%], Roche Complete Protease Inhibitor EDTA-Free), resuspended in 40 µl NE per sample and bound to 20 µl Magnetic ConA Agarose beads equilibrated in binding buffer. After incubation nuclei and beads are resuspended for 5 min in EDTA wash buffer (wash buffer with EDTA [0.2 mM]). Samples were divided in 200 µl PCR tubes and antibody incubation was performed in 200 µl wash buffer with 2 µl of antibody (for antibody and batch information, see Table 1) ON at 4 °C on a rotator. After ON incubation samples were washed 5 times in wash buffer and resuspended in 200 µl of pAG-MN buffer (wash buffer with pAG-MN 0.6 µg/ml) for 30 min at 4 °C on a rotator. Samples were washed five times, followed by digestion for 30 min in wet ice in wash buffer with 2 mM CaCl2. After 30 min the digestion buffer was removed and the reaction was stopped with 50 µl of 1X Urea STOP buffer (NaCl [100 mM], EDTA [2 mM], EGTA [2 mM], IGEPAL [0.5%], Urea [8.8 M]) and the samples were incubated 1 hr at 4°C. Beads were collected on the magnet and liquid transferred to a new PCR tube in which it was cleaned up twice using Mag-Bind TotalPure NGS beads (Cat. #M1327, Omega Bio-Tek) at 2X, and then resuspended in 20 µl Tris-HCl pH 7.5. Library preparation was performed using the KAPA Hyper Prep Kit for Illumina platforms (Cat. #KK8504, KAPA Biosystems) according to the manufacturer’s guidelines with the following modifications. End repair and A-tailing was performed with 0.4X volume reactions with 20 µl of purified DNA. The thermocycler conditions were set to 12 °C for 15 min, 37 °C for 15 min and 58 °C for 25 min to prevent thermal degradation of the shortest fragments. Adapter ligation was performed in 0.4X volume reactions. KAPA Dual Indexed adapters were used at 0.15 µM. A post-ligation clean-up was performed with Mag-Bind TotalPure NGS beads at 1.2X the sample volume. Resuspension was done in 10 mM Tris-HCl pH 8.0. Library amplification was performed in 0.5X volume reactions. The cycling conditions were set as follows: 45 sec initial denaturation at 98 °C, 15 sec denaturation at 98 °C, 10 sec annealing/elongation at 60 °C, 1 min final extension at 72 °C, hold at 4 °C, with 13 cycles. After amplification, a post-amplification cleanup was performed using NGS beads at 1.2X sample volume. Libraries were then run on an E-Gel EX 2% agarose gel (Cat. # G402022, Invitrogen) for 10 min using the E-Gel Power Snap Electrophoresis System (Invitrogen). Bands of interest between 150 and 500 bp were excised and purified using the GeneJET Gel Extraction Kit (Cat. #K0691, Thermo Scientific) according to manufacturer’s instructions.

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

characteristic: strain

characteristic: title


status: PUBLIC

tag: attribute

text: Wallenberg Centre for Molecular Medicine, Linkoping University, Sweden; Department of Biomedical and Clinical Sciences, Division of Molecular Medicine and Virology; Faculty of Medicine and Health Sciences; Linkoping University, Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: kidney epithelial cell

text: human

characteristic: common name

text: embryo

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: cell line

text: kidney epithelial cell

characteristic: cell type

text: human

text: Protocols: 500,000 cells were harvested using TrypLE (Cat. #12604013, Gibco). Human embryonic kidney 293T cells (HEK293T) were cultured at 37 °C in a humidified incubator with 5% CO2. Cells were cultured in high glucose Dulbecco’s Modified Eagle Medium (Cat. #41965039, Gibco) supplemented with 10 % bovine calf serum (Cat. #1233C, Sigma-Aldrich) and 1X Penicillin-Streptomycin (Cat. #15140148, Gibco). HEK293T cells were cultured in media containing 10 µM CHIR99021, a GSK-3 inhibitor, (Cat. #SML1046, Sigma Aldrich) for 24 hr. Samples were washed twice in wash buffer (HEPES pH 7.5 [20 mM], NaCl [150 mM], Spermidine [0.5 mM], Roche Complete Protease Inhibitor EDTA-Free (Cat. # COEDTAFRO, Roche)) and bound to 20 µl Magnetic ConA Agarose beads (Cat. #ABIN6952467, antibodies-online) equilibrated in binding buffer (HEPES pH 7.5 [20 mM], KCl [10 mM], CaCl2 [1 mM], MnCl2 [1 mM]). Antibody incubation was performed in 150 µl antibody buffer (wash buffer with digitonin [0.01%] and EDTA [2 mM]) with 1.5 µl anti-β-catenin antibody (Cat. #ABIN2855042, antibodies-online) overnight at 4 °C. Thereafter washes were performed with wash buffer containing 0.01% digitonin. After overnight incubation, samples were washed three times and pAG-MN protein was added at 0.6 µg/ml, in total volume of 150 µl. pAG/MNase was a gift from Steven Henikoff (Addgene plasmid #123461; http://n2t.net/addgene:123461; RRID: Addgene_123461), expressed and purified as described in (REF Meers 2019a). Samples were washed three times, followed by digestion for 30 min in wet ice in wash buffer supplemented with 2 mM CaCl2. 2X stop buffer (NaCl [340 mM], EDTA [20 mM], EGTA [4 mM], digitonin [0.05%], RNase A [100 µg/ml], glycogen [50 µl/ml]) was added to stop the reaction, and samples were incubated for 30 min at 37 °C. Beads were collected on the magnet and liquid transferred to a new tube. 2.5 µl proteinase K (Cat. #P8107S, New England BioLabs) and 2 µl 10% SDS were added, and samples incubated for 1 hr at 50 °C. Library preparation was performed using the KAPA Hyper Prep Kit for Illumina platforms (Cat. #KK8504, KAPA Biosystems) according to the manufacturer’s guidelines with the following modifications. End repair and A-tailing was performed with 0.4X volume reactions with 20 µl of purified DNA. The thermocycler conditions were set to 12 °C for 15 min, 37 °C for 15 min and 58 °C for 25 min to prevent thermal degradation of the shortest fragments. Adapter ligation was performed in 0.4X volume reactions. KAPA Dual Indexed adapters were used at 0.15 µM. A post-ligation clean-up was performed with Mag-Bind TotalPure NGS beads at 1.2X the sample volume. Resuspension was done in 10 mM Tris-HCl pH 8.0. Library amplification was performed in 0.5X volume reactions. The cycling conditions were set as follows: 45 sec initial denaturation at 98 °C, 15 sec denaturation at 98 °C, 10 sec annealing/elongation at 60 °C, 1 min final extension at 72 °C, hold at 4 °C, with 13 cycles. After amplification, a post-amplification cleanup was performed using NGS beads at 1.2X sample volume. Libraries were then run on an E-Gel EX 2% agarose gel (Cat. # G402022, Invitrogen) for 10 min using the E-Gel Power Snap Electrophoresis System (Invitrogen). Bands of interest between 150 and 500 bp were excised and purified using the GeneJET Gel Extraction Kit (Cat. #K0691, Thermo Scientific) according to manufacturer’s instructions.

characteristic: description

text: embryo

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


text: public

text: ArrayExpress

text: house mouse

text: Protocols: Tissues were dissociated to single-cellsingle cell via incubation in Tryple Express Enzyme (12-604-013, Thermo Fisher Scientific; 1 ml /4 limbs) for 15 minutes at 37C °C on a shaker. The cell suspension was resuspended in ice-cold PBS, filtered through a 40 m cell strainer (KKE3.1, Carl Roth) and further processed for CUT&RUN. The age of embryos was determined according to timed mating and vaginal plug observation (E0.5 dpc) and confirmed by morphological criteria. Pregnant females were sacrificed by cervical dislocation and E11.5 embryos were surgically removed. Hindlimbs were dissected under a dissection stereomicroscope (SZ61, Olympus), and pooled. Cells were washed three times in Nuclear Extraction (NE) buffer (HEPES-KOH pH-8.2 [20 mM], KCl [10 mM], Spermidine [0.5 mM], IGEPAL [0.05%], Glycerol [20%], Roche Complete Protease Inhibitor EDTA-Free), resuspended in 40 µl NE per sample and bound to 20 µl Magnetic ConA Agarose beads equilibrated in binding buffer. After incubation nuclei and beads are resuspended for 5 min in EDTA wash buffer (wash buffer with EDTA [0.2 mM]). Samples were divided in 200 µl PCR tubes and antibody incubation was performed in 200 µl wash buffer with 2 µl of antibody (for antibody and batch information, see Table 1) ON at 4 °C on a rotator. After ON incubation samples were washed 5 times in wash buffer and resuspended in 200 µl of pAG-MN buffer (wash buffer with pAG-MN 0.6 µg/ml) for 30 min at 4 °C on a rotator. Samples were washed five times, followed by digestion for 30 min in wet ice in wash buffer with 2 mM CaCl2. After 30 min the digestion buffer was removed and the reaction was stopped with 50 µl of 1X Urea STOP buffer (NaCl [100 mM], EDTA [2 mM], EGTA [2 mM], IGEPAL [0.5%], Urea [8.8 M]) and the samples were incubated 1 hr at 4°C. Beads were collected on the magnet and liquid transferred to a new PCR tube in which it was cleaned up twice using Mag-Bind TotalPure NGS beads (Cat. #M1327, Omega Bio-Tek) at 2X, and then resuspended in 20 µl Tris-HCl pH 7.5. Library preparation was performed using the KAPA Hyper Prep Kit for Illumina platforms (Cat. #KK8504, KAPA Biosystems) according to the manufacturer’s guidelines with the following modifications. End repair and A-tailing was performed with 0.4X volume reactions with 20 µl of purified DNA. The thermocycler conditions were set to 12 °C for 15 min, 37 °C for 15 min and 58 °C for 25 min to prevent thermal degradation of the shortest fragments. Adapter ligation was performed in 0.4X volume reactions. KAPA Dual Indexed adapters were used at 0.15 µM. A post-ligation clean-up was performed with Mag-Bind TotalPure NGS beads at 1.2X the sample volume. Resuspension was done in 10 mM Tris-HCl pH 8.0. Library amplification was performed in 0.5X volume reactions. The cycling conditions were set as follows: 45 sec initial denaturation at 98 °C, 15 sec denaturation at 98 °C, 10 sec annealing/elongation at 60 °C, 1 min final extension at 72 °C, hold at 4 °C, with 13 cycles. After amplification, a post-amplification cleanup was performed using NGS beads at 1.2X sample volume. Libraries were then run on an E-Gel EX 2% agarose gel (Cat. # G402022, Invitrogen) for 10 min using the E-Gel Power Snap Electrophoresis System (Invitrogen). Bands of interest between 150 and 500 bp were excised and purified using the GeneJET Gel Extraction Kit (Cat. #K0691, Thermo Scientific) according to manufacturer’s instructions.

text: embryonic day 11.5

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hindlimb

characteristic: organism part

text: Mus musculus

text: JAX SWISS 034608

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUTE OF VIROLOGY, TECHNISCHE UNIVERSITAET MUENCHEN / HELMHOLTZ ZENTRUM MUENCHEN

characteristic: Submitter Id

text: human

text: A549 cells, control replicate 1, technical replicate 1

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF VIROLOGY, TECHNISCHE UNIVERSITAET MUENCHEN / HELMHOLTZ ZENTRUM MUENCHEN

text: public

text: human

characteristic: common name

text: A549 cells, control replicate 1, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 1, technical replicate 3

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 2, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 2, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 2, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 3, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 3, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells, control replicate 3, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 1, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 1, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 1, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 2, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 2, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 2, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 3, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 3, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: INSTITUTE OF VIROLOGY, TECHNISCHE UNIVERSITAET MUENCHEN / HELMHOLTZ ZENTRUM MUENCHEN

text: public

text: human

text: A549 cells infected with IAV/PR8, replicate 3, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 1, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 1, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 1, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 2, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 2, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 2, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 3, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 3, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35MdNS1, replicate 3, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 1, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 1, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 1, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 2, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 2, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 2, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: INSTITUTE OF VIROLOGY, TECHNISCHE UNIVERSITAET MUENCHEN / HELMHOLTZ ZENTRUM MUENCHEN

text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 3, technical replicate 1

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 3, technical replicate 2

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: A549 cells infected with IAV/SC35M, replicate 3, technical replicate 3

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

characteristic: Submitter Id

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN12258/2022

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: title


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: ST

text: fallow deer

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

type: AMR curated data - CABBAGE

value: ceftriaxone

value: EUCAST

value: disk diffusion

value: susceptible

value: Escherichia coli

value: cefepime

value: gentamicin

value: sulfamethoxazole

value: cefoxitin

value: ciprofloxacin

value: tigecycline

value: cefotaxime

value: ceftazidime

value: erythromycin

value: trimethoprim

value: chloramphenicol

value: amoxicillin-clavulanic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: tetracycline

value: nalidixic acid

value: meropenem

value: ceftriaxone

value: azithromycin


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: EUCAST

value: disk diffusion

value: susceptible

value: Escherichia coli

value: cefepime


text: public

text: PRT

text: Portugal

text: EPEC

text: red deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: ampicillin

value: tigecycline

value: cefoxitin

value: gentamicin

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: ceftazidime

value: trimethoprim

value: chloramphenicol


text: public

text: PRT

text: Portugal

text: ETEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: wild boar

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: TET-SMX

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: erythromycin

value: nalidixic acid

value: cefotaxime

value: amoxicillin-clavulanic acid


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: EUCAST

value: tetracycline

value: azithromycin

value: ceftriaxone

value: sulfamethoxazole

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: cefepime

value: disk diffusion

value: susceptible

value: Escherichia coli

value: tigecycline

value: ampicillin


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: red deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: chloramphenicol

value: trimethoprim

value: ceftazidime


text: public

text: PRT

text: Portugal

text: STEC

text: red deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: erythromycin

value: gentamicin

value: ciprofloxacin

value: cefotaxime

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: EPEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: amoxicillin-clavulanic acid

value: EUCAST

value: ceftriaxone

value: azithromycin

value: cefoxitin

value: tetracycline


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: disk diffusion

value: susceptible

value: Escherichia coli

value: cefepime

value: sulfamethoxazole


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: ampicillin

value: trimethoprim

value: meropenem

value: tigecycline


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: cefotaxime

value: gentamicin

value: ciprofloxacin


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: EUCAST

value: erythromycin

value: chloramphenicol

value: amoxicillin-clavulanic acid

value: nalidixic acid

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: cefoxitin

value: disk diffusion

value: susceptible

value: ceftriaxone


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: Escherichia coli

value: tetracycline

value: ampicillin

value: azithromycin

value: sulfamethoxazole


text: public

text: PRT

text: Portugal

text: ETEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: cefotaxime

value: trimethoprim

value: meropenem

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: red deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: EUCAST

value: chloramphenicol

value: cefepime


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: erythromycin

value: ceftazidime

value: gentamicin

value: ciprofloxacin


text: public

text: PRT

text: Portugal

text: ETEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: disk diffusion

value: susceptible

value: ceftriaxone

value: cefoxitin

value: amoxicillin-clavulanic acid

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: Escherichia coli

value: sulfamethoxazole

value: cefotaxime

value: tetracycline


text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: EUCAST

value: ampicillin

value: meropenem

value: tigecycline

value: azithromycin

value: trimethoprim


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: cefepime

value: erythromycin

value: gentamicin

value: ceftazidime

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: disk diffusion

value: susceptible

value: cefoxitin

value: ciprofloxacin

value: ceftriaxone


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: red deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: Escherichia coli

value: nalidixic acid

value: tetracycline

value: amoxicillin-clavulanic acid

value: sulfamethoxazole

value: cefotaxime


text: public

text: PRT

text: Portugal

text: EPEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: EUCAST

value: azithromycin

value: tigecycline

value: ampicillin

value: trimethoprim

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: disk diffusion

value: chloramphenicol

value: erythromycin

value: cefepime

value: gentamicin


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: red deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: cefoxitin

value: ceftriaxone

value: ceftazidime


text: public

text: PRT

text: Portugal

text: EPEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: amoxicillin-clavulanic acid

value: ciprofloxacin

value: nalidixic acid

value: cefotaxime

value: tetracycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: OND:HND

text: Animal

value: EUCAST

value: trimethoprim

value: sulfamethoxazole

value: tigecycline

value: ampicillin


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: disk diffusion

value: chloramphenicol

value: azithromycin

value: erythromycin

value: meropenem


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: susceptible

value: Escherichia coli

value: cefoxitin

value: ceftriaxone


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: amoxicillin-clavulanic acid

value: nalidixic acid

value: ceftazidime


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: tetracycline

value: EUCAST

value: gentamicin

value: cefotaxime


text: public

text: PRT

text: Portugal

text: STEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: sulfamethoxazole

value: ciprofloxacin

value: tigecycline

value: trimethoprim

value: cefepime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: disk diffusion

value: azithromycin

value: chloramphenicol

value: ampicillin

value: erythromycin


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: wild boar

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: amoxicillin-clavulanic acid

value: ceftriaxone

value: cefoxitin


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: nalidixic acid

value: EUCAST

value: tetracycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: gentamicin

value: meropenem

value: cefotaxime

value: sulfamethoxazole


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: disk diffusion

value: cefepime

value: trimethoprim

value: ceftazidime

value: tigecycline

value: ciprofloxacin


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: susceptible

value: Escherichia coli

value: ampicillin

value: azithromycin

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: ceftriaxone

value: EUCAST

value: amoxicillin-clavulanic acid

value: erythromycin


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: tetracycline

value: gentamicin

value: cefoxitin

value: meropenem

value: nalidixic acid


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: cefotaxime

value: disk diffusion

value: cefepime

value: trimethoprim

value: sulfamethoxazole

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: susceptible

value: Escherichia coli

value: azithromycin

value: tigecycline


text: public

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: EUCAST

value: amoxicillin-clavulanic acid

value: ceftriaxone

value: ciprofloxacin

value: chloramphenicol


text: public

text: PRT

text: Portugal

text: STEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: meropenem

value: cefoxitin

value: ampicillin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: fallow deer

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: AMP-NAL-CIP

text: Faeces

text: Escherichia coli

text: Animal

value: disk diffusion

value: nalidixic acid

value: resistant

value: cefotaxime

value: gentamicin

value: erythromycin


text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: fallow deer

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: trimethoprim

value: ceftazidime

value: sulfamethoxazole


text: public

text: PRT

text: Portugal

text: ExPEC

text: wild boar

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: source

value: EUCAST

value: tigecycline

value: tetracycline

value: cefepime

value: azithromycin

value: ceftriaxone


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Water

text: Escherichia coli

text: Susceptible

text: Water

text: Escherichia coli

text: Environment

value: disk diffusion

value: ampicillin

value: ciprofloxacin

value: chloramphenicol


text: public

text: Portugal

text: ExPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: seagull

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia coli

characteristic: organism

text: MDR-ESBL

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title


text: public

text: Portugal

text: EAEC

text: seagull

text: OHEJP-DISCOVER

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

text: MDR-ESBL

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: ExPEC

text: Wild birds

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: ExPEC

characteristic: Pathotype

text: Other wild birds

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal


text: public

text: PRT

text: Portugal

text: EAEC

characteristic: SRA accession

characteristic: ST

text: Wild birds

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: meropenem

value: gentamicin

value: cefoxitin

value: cefotaxime

value: amoxicillin-clavulanic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: STEC

text: Waterfowl

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: trimethoprim

value: erythromycin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

text: Cattle

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: sulfamethoxazole

value: EUCAST

value: nalidixic acid

value: tetracycline

value: ceftazidime

value: tigecycline


text: public

text: PRT

text: Portugal

text: STEC

characteristic: SRA accession

characteristic: ST

text: Cattle

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: disk diffusion

value: ciprofloxacin

value: ceftriaxone

value: cefepime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

text: hedgehog

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: title

value: cefoxitin

value: chloramphenicol

value: ampicillin

value: meropenem

value: azithromycin

value: gentamicin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: STEC

characteristic: Pathotype

text: pigeon

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: TET-SMX-TMP

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: susceptible

value: Escherichia coli

value: amoxicillin-clavulanic acid

value: resistant

value: erythromycin

value: cefotaxime

value: trimethoprim


text: public

text: PRT

text: Portugal

text: EPEC

characteristic: SRA accession

characteristic: ST

text: seagull

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

value: EUCAST

value: disk diffusion

value: nalidixic acid

value: sulfamethoxazole

value: tigecycline

value: tetracycline

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: EPEC

text: OHEJP-DISCOVER

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

text: ampC-promotor

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: non-STEC

characteristic: Pathotype

text: Pet

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source


text: public

text: Portugal

text: EAEC

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia coli

characteristic: organism

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: ExPEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

text: ESBL

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: ExPEC

text: Dogs

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Other biological samples

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: non-STEC

characteristic: Pathotype

text: Cats

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Other biological samples

text: Escherichia coli

text: Animal


text: public

text: Portugal

text: ExPEC

characteristic: SRA accession

characteristic: ST

text: Pet

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: EAEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: ESBL

text: Other biological samples

text: Escherichia coli

text: Animal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: ExPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: ETEC

text: Dogs

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title


text: public

text: Portugal

text: ExPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: non-STEC

text: OHEJP-DISCOVER

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: ExPEC

text: Seagulls

text: OHEJP-DISCOVER

text: Escherichia coli

characteristic: organism

text: ESBL

characteristic: resistance profile

text: Faeces

characteristic: sample

text: Escherichia coli

text: Animal


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: EPEC

text: Seagulls

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

characteristic: serotype

text: Animal


text: public

text: Portugal

text: EAEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Seagulls

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: EAEC

text: Seagulls

text: OHEJP-DISCOVER

characteristic: description

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: OND:HND

text: Animal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: EPEC

text: Broiler chickens

text: OHEJP-DISCOVER

text: Escherichia coli

characteristic: organism

text: ESBL

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: non-STEC

text: Broiler chickens

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Faeces

characteristic: sample

text: Escherichia coli

text: Animal


text: public

text: Portugal

text: ExPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Broiler chickens

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

characteristic: serotype

text: Animal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: EAEC

text: Broiler chickens

text: OHEJP-DISCOVER

characteristic: description

characteristic: isolation date

text: Escherichia coli

text: ESBL

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: EAEC

text: Broiler chicken

text: OHEJP-DISCOVER

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: ESBL

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EAEC

text: Seagull

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: NAL-CIP

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: ampicillin

value: chloramphenicol

value: ceftriaxone

value: cefepime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: ExPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia coli

text: ESBL

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: ExPEC

text: Wild birds

text: OHEJP-DISCOVER

characteristic: description

characteristic: isolation date

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: MDR

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: susceptible

value: Escherichia coli

value: ciprofloxacin

value: cefoxitin

value: gentamicin

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: non-STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Cats

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: AMP-CIP-NAL

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: erythromycin

value: EUCAST

value: resistant

value: azithromycin

value: amoxicillin-clavulanic acid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: ExPEC

text: Cats

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: disk diffusion

value: sulfamethoxazole

value: tetracycline

value: tigecycline


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: ceftriaxone

value: ceftazidime

value: chloramphenicol

value: cefotaxime

value: ampicillin

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: cefepime

value: susceptible

value: Escherichia coli

value: cefoxitin

value: ciprofloxacin

value: trimethoprim

value: gentamicin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: erythromycin

value: EUCAST

value: disk diffusion

value: meropenem

value: amoxicillin-clavulanic acid


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ExPEC

text: Dogs

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: sulfamethoxazole

value: tetracycline

value: azithromycin

value: ceftriaxone

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: tigecycline

value: nalidixic acid

value: cefotaxime


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: ampicillin

value: cefepime


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ExPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: cefoxitin

value: trimethoprim

value: erythromycin

value: gentamicin

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: ExPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Cats

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: EUCAST

value: disk diffusion

value: chloramphenicol


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: sulfamethoxazole

value: ceftriaxone

value: meropenem

value: tetracycline


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ExPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: ceftazidime

value: nalidixic acid

value: cefotaxime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: susceptible

value: Escherichia coli

value: ampicillin

value: tigecycline

value: azithromycin

value: amoxicillin-clavulanic acid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: ExPEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: cefoxitin

value: cefepime

value: ciprofloxacin

value: gentamicin

value: erythromycin


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Dogs

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: EUCAST

value: disk diffusion

value: ceftriaxone

value: chloramphenicol

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: ceftazidime

value: sulfamethoxazole

value: tetracycline

value: cefotaxime

value: nalidixic acid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: meropenem

value: ampicillin

value: azithromycin


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Dogs

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: ciprofloxacin

value: tigecycline

value: amoxicillin-clavulanic acid

value: cefepime

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: ETEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: EUCAST

value: disk diffusion

value: ceftriaxone

value: chloramphenicol

value: cefoxitin


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: cefotaxime

value: erythromycin

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: ceftazidime

value: susceptible

value: Escherichia coli

value: nalidixic acid

value: sulfamethoxazole

value: tetracycline


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: ExPEC

text: Cats

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: azithromycin

value: tigecycline

value: amoxicillin-clavulanic acid

value: meropenem

value: ampicillin


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ETEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: cefepime

value: EUCAST

value: disk diffusion

value: ceftriaxone


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Cats

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: gentamicin

value: cefoxitin

value: chloramphenicol

value: ciprofloxacin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: ExPEC

text: Cats

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: cefotaxime

value: susceptible

value: Escherichia coli

value: erythromycin

value: trimethoprim

value: ceftazidime


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ETEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: tetracycline

value: nalidixic acid

value: amoxicillin-clavulanic acid

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: ExPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Dogs

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: EUCAST

value: meropenem

value: sulfamethoxazole

value: cefepime


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: ampicillin

value: disk diffusion

value: gentamicin

value: ceftriaxone

value: azithromycin

value: cefoxitin


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ETEC

text: Dogs

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: chloramphenicol

value: susceptible

value: Escherichia coli

value: erythromycin

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Cats

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: nalidixic acid

value: cefotaxime

value: tetracycline

value: ceftazidime

value: trimethoprim


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Dogs

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: EUCAST

value: meropenem

value: amoxicillin-clavulanic acid

value: tigecycline

value: sulfamethoxazole


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Cats

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: ampicillin

value: disk diffusion

value: azithromycin

value: gentamicin

value: cefepime


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Cats

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: susceptible

value: Escherichia coli

value: ceftriaxone

value: chloramphenicol

value: erythromycin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Pig

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: Susceptible

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: nalidixic acid

value: cefotaxime

value: cefoxitin

value: ceftazidime

value: ciprofloxacin


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Pig

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: Susceptible

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

value: amoxicillin-clavulanic acid

value: EUCAST

value: meropenem

value: tetracycline

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Piglet

characteristic: Submitter Id

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: TET

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: disk diffusion

value: ampicillin

value: gentamicin

value: azithromycin

value: tigecycline


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Piglet

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

characteristic: organism

text: NAL-SMX

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: title

value: susceptible

value: Escherichia coli

value: resistant

value: cefepime

value: ceftriaxone

value: sulfamethoxazole


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: EPEC

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: NAL-SMX

text: Faeces

text: Escherichia coli

text: Animal

value: erythromycin

value: nalidixic acid

value: chloramphenicol

value: ceftazidime


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

text: Piglet

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: NAL-SMX

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: EUCAST

value: cefotaxime

value: ciprofloxacin

value: cefoxitin

value: tetracycline

value: meropenem


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: ExPEC

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: AMP-TET-TMP-SMX

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

characteristic: title

value: disk diffusion

value: gentamicin

value: tigecycline

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Portugal

text: EAEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: ExPEC

text: Pig

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

characteristic: isolation date

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PRT

text: Portugal

text: EAEC

text: Pig

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: Susceptible

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: amoxicillin-clavulanic acid

value: susceptible

value: Escherichia coli

value: ampicillin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EAEC

text: Pig

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: TET-SMX

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

characteristic: title

value: azithromycin

value: resistant

value: nalidixic acid

value: sulfamethoxazole


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: STEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Pigs

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

characteristic: isolation date

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: Animal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PRT

text: Portugal

text: STEC

text: Pigs

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: AMP-TET

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: chloramphenicol

value: EUCAST

value: erythromycin

value: cefotaxime

value: ceftriaxone


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PRT

text: Portugal

text: EPEC

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia

text: other (non-clinical isolate)

text: Faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: AMP-AMC-GMN-TMP-SMX

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

characteristic: title

value: tetracycline

value: disk diffusion

value: cefepime

value: ceftazidime

value: ciprofloxacin

value: meropenem

value: cefoxitin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PRT

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Piglet

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

text: Escherichia

text: other (non-clinical isolate)

characteristic: isolation date

text: Faeces

text: gastrointestinal system

text: Escherichia coli

text: TMP-SMX

text: Faeces

text: Escherichia coli

text: Animal

value: susceptible

value: Escherichia coli

value: trimethoprim

value: amoxicillin-clavulanic acid

value: ampicillin

value: gentamicin


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PRT

text: Portugal

text: EPEC

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia

characteristic: genus

text: other (non-clinical isolate)

characteristic: host

characteristic: isolate

text: Faeces

text: gastrointestinal system

characteristic: lab id

text: Escherichia coli

text: TET-SMX

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal

value: EUCAST

value: chloramphenicol

value: resistant

value: nalidixic acid

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Portugal

text: ExPEC

text: Piglet

text: OHEJP-DISCOVER

text: Escherichia coli

characteristic: organism

text: ESBL

characteristic: resistance profile

text: Faeces

text: Escherichia coli

text: Animal

characteristic: source

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Portugal

text: EPEC

characteristic: Pathotype

characteristic: SRA accession

characteristic: ST

text: Piglet

characteristic: Submitter Id

text: OHEJP-DISCOVER

characteristic: description

characteristic: isolation date

text: Escherichia coli

text: MDR

text: Faeces

text: Escherichia coli

text: OND:HND

text: Animal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Portugal

text: ExPEC

text: Piglet

text: OHEJP-DISCOVER

characteristic: lab id

text: Escherichia coli

text: MDR

text: Faeces

characteristic: sample

text: Escherichia coli

characteristic: serotype

text: Animal