E-MTAB-11954:Sample 54

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 54

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 54


E-MTAB-11954:Sample 37

status: PUBLIC

tag: attribute

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 37

tag: Namespace:City of Hope National Medical Center

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Blood: EDTA. 3 ml minimum, 6ml preferred Bone Marrow: 3 ml minimum, 6ml preferred FFPE: FFPE Block designated by the molecular pathologist, which is not exposed to any de-calcifying solutions. Or 1 H&E and 15 USS(unstained slides 10uM thickness) Not Applicable Growth protocol is not applicable Not Applicable Blood and Bone Marrow:Qiagen RNeasy Mini Kit FFPE: Total Nucleic Acid FFPE Tissue Extraction-Agencourt FormaPure Archer FusionPlex protocol for Ion Torrent

text: adult acute lymphoblastic leukemia

text: Hispanic

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 37

characteristic: title


E-MTAB-11954:Sample 92

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: Yes

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 92

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 92


E-MTAB-11954:Sample 22

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 22

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 22


E-MTAB-11954:Sample 30

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 30

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Asian

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 30

characteristic: title


E-MTAB-11954:Sample 41

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 41

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: AA

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 41


E-MTAB-11954:Sample 42

text: PB: 55 BM: 90

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 42

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 42


E-MTAB-11954:Sample 93

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 93

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Asian

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 93

characteristic: title


E-MTAB-11954:Sample 32

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 32

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: 1. ZC3HAV1-ABL2 2. UBE2N-SOCS2 3. PAX5-PDE3B

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 32


E-MTAB-11954:Sample 70

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 70

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 70


E-MTAB-11954:Sample 13

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 13

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 13

characteristic: title


E-MTAB-11954:Sample 25

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

text: Yes

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 25

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 25


E-MTAB-11954:Sample 8

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: SSBP2-CHD1 (fusion with unknown significance)

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-11954:Sample 1

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 1

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1

characteristic: title


E-MTAB-11954:Sample 94

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 94

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 94


E-MTAB-11954:Sample 31

text: PB

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 31

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: EPOR-IGH P2RY8-CD99P1

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 31


E-MTAB-11954:Sample 2

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 2

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected, TFG-GPR128 polymorphic fusion detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: female

characteristic: sex

text: Sample 2

characteristic: title


E-MTAB-11954:Sample 95

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 95

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: White

characteristic: ethnic group

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 95


E-MTAB-11954:Sample 39

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 39

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: TERF2 -JAK2

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 39


E-MTAB-11954:Sample 62

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 62

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: female

characteristic: sex

text: Sample 62

characteristic: title


E-MTAB-11954:Sample 24

text: PB: 80

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 24

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 24


E-MTAB-11954:Sample 29

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 29

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 29


E-MTAB-11954:Sample 26

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 26

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 26

characteristic: title


E-MTAB-11954:Sample 51

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 51

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: AA

characteristic: ethnic group

text: TCF3 -PBX1

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 51


E-MTAB-11954:Sample 65

text: PB

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 65

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 65


E-MTAB-11954:Sample 38

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 38

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: NUP214 -ABL1

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: female

characteristic: sex

text: Sample 38

characteristic: title


E-MTAB-11954:Sample 58

text: PB: 90 BM: 92

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 58

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: White

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 58


E-MTAB-11954:Sample 85

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 85

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 85


E-MTAB-11954:Sample 98

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 98

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: female

characteristic: sex

text: Sample 98

characteristic: title


E-MTAB-11954:Sample 12

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 12

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: White

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 12


E-MTAB-11954:Sample 97

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 97

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 97


E-MTAB-11954:Sample 68

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 68

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 68

characteristic: title


E-MTAB-11954:Sample 81

text: PB

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 81

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: TFG-GPR128 (Polymorphic fusion)

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 81


E-MTAB-11954:Sample 82

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 82

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 82


E-MTAB-11954:Sample 9

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: Yes

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 9

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: IGH

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 9

characteristic: title


E-MTAB-11954:Sample 69

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 69

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 69


E-MTAB-11954:Sample 86

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 86

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 86


E-MTAB-11954:Sample 4

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

text: Yes

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 4

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 4

characteristic: title


E-MTAB-11954:Sample 46

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 46

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: White

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 46


E-MTAB-11954:Sample 23

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Yes

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: IGH-CRLF2 CDKN2A-CDKN2B-AS1

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 23


E-MTAB-11954:Sample 33

text: Tested on PB BM: 80

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 33

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 33

characteristic: title


E-MTAB-11954:Sample 64

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: Yes

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 64

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 64


E-MTAB-11954:Sample 88

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 88

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 88


E-MTAB-11954:Sample 6

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 6

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 6

characteristic: title


E-MTAB-11954:Sample 47

text: No blast info

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 47

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: White

characteristic: ethnic group

text: INTERGENIC-MYC

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 47


E-MTAB-11954:Sample 35

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Yes

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 35

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: EPOR-IGH

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: male

text: Sample 35


E-MTAB-11954:Sample 28

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 28

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 28

characteristic: title


E-MTAB-11954:Sample 52

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 52

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 52


E-MTAB-11954:Sample 83

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 83

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 83


E-MTAB-11954:Sample 74

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 74

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 74

characteristic: title


E-MTAB-11954:Sample 7

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: Yes

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 7

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 7


E-MTAB-11954:Sample 84

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 84

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 84


E-MTAB-11954:Sample 27

text: Yes

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 27

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Asian

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 27

characteristic: title


E-MTAB-11954:Sample 16

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

text: Yes

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 16

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: blood

text: Ph-like

text: Homo sapiens

text: female

text: Sample 16


E-MTAB-11954:Sample 67

text: No blast info

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 67

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 67


E-MTAB-11954:Sample 91

text: No blast info

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 91

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Ph-like

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 91

characteristic: title


E-MTAB-11954:Sample 75

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 75

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: White

characteristic: ethnic group

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 75


E-MTAB-11954:Sample 15

text: PB

characteristic: Blast % by Flow cytometry

text: Yes

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 15

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 15


E-MTAB-11954:Sample 66

text: PB: 25% circulating blast

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 66

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 66

characteristic: title


E-MTAB-11954:Sample 87

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11954:Sample 87

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult acute lymphoblastic leukemia

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: female

text: Sample 87


E-MTAB-11954:Sample 76

text: No

characteristic: CRLF2 expression

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: No

characteristic: IGH rearranmgment by FISH

text: City of Hope National Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11954:Sample 76

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult acute lymphoblastic leukemia

text: Hispanic

text: no fusions detected

text: Homo sapiens

text: Homo sapiens

text: blood

text: Other

text: Homo sapiens

text: male

text: Sample 76


E-MTAB-11954:Sample 89

characteristic: Blast % by Flow cytometry

text: No

characteristic: ENA-FIRST-PUBLIC

text: No

text: City of Hope National Medical Center

text: public

text: E-MTAB-11954:Sample 89

text: ArrayExpress

text: human

text: adult acute lymphoblastic leukemia

text: White

text: no fusions detected

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: Other

characteristic: ph like

text: Homo sapiens

text: male

characteristic: sex

text: Sample 89

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IHU - Mediterranee Infection

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:IHU - Mediterranee Infection

characteristic: Submitter Id

text: Citrobacter timonensis was isolated from a patient stool as part of a culturomics study aimaing at cultivating all bacteria in human feces.

characteristic: description

text: Citrobacter sp. Marseille-Q6884

characteristic: organism

text: Citrobacter sp. Marseille-Q6884

characteristic: strain

text: Citrobacter timonensis genome

characteristic: title


text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: SRA accession

tag: Namespace:VALE INSTITUTE OF TECHNOLOGY

text: ITV Vale Institute of Technology

characteristic: collecting institution

text: not provided

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

text: Brazil

characteristic: geographic location (country and/or sea)

text: NOVA TIMBOTEUA

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

characteristic: description

text: Brazil

text: NOVA TIMBOTEUA

text: human

text: recovered

text: diseased

text: Homo sapiens

text: male

text: not provided

characteristic: sample capture status


text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: SRA accession

text: ITV Vale Institute of Technology

characteristic: collecting institution

text: not provided

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

text: Brazil

characteristic: geographic location (country and/or sea)

text: BELÉM

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

text: public

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

text: BELÉM

text: human

text: recovered

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ITV Vale Institute of Technology

characteristic: collecting institution

text: not provided

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

characteristic: description

text: Brazil

text: PRIMAVERA

text: human

text: recovered

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

characteristic: geographic location (country and/or sea)

text: PRIMAVERA

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

text: Homo sapiens

text: male

text: not provided

characteristic: organism

characteristic: title


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

text: CONCEICAO DO ARAGUAIA

text: human

text: recovered

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: Submitter Id

text: ITV Vale Institute of Technology

characteristic: collecting institution

text: not provided

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

characteristic: description

text: Brazil

text: CONCEICAO DO ARAGUAIA

text: human

text: recovered

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: sample capture status


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

characteristic: geographic location (country and/or sea)

text: MARABA

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: SRA accession

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

text: MARABA

text: human

text: recovered

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ITV Vale Institute of Technology

characteristic: collecting institution

text: not provided

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

characteristic: description

text: Brazil

text: ANANINDEUA

text: human

text: recovered

text: diseased

text: Homo sapiens

text: male

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

characteristic: geographic location (country and/or sea)

text: SAO JOAO DE PIRABAS

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: organism

characteristic: title


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

text: REDENCAO

text: human

text: recovered

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: Submitter Id

text: ITV Vale Institute of Technology

characteristic: collecting institution

text: not provided

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

characteristic: description

text: Brazil

text: ANANINDEUA

text: human

text: recovered

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: sample capture status


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

characteristic: geographic location (country and/or sea)

text: CASTANHAL

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: SRA accession

text: ITV Vale Institute of Technology

text: not provided

text: Universidade Federal do Pará

text: Brazil

text: OEIRAS DO PARA

text: human

text: recovered

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: not provided

characteristic: isolate


text: VALE INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ITV Vale Institute of Technology

characteristic: collecting institution

characteristic: collection date

text: Universidade Federal do Pará

characteristic: collector name

characteristic: description

text: Brazil

text: BELÉM

unit: years

characteristic: host age

text: human

text: recovered

text: diseased

text: Homo sapiens

text: male

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VALE INSTITUTE OF TECHNOLOGY

text: public

characteristic: SRA accession

text: ITV Vale Institute of Technology

text: Universidade Federal do Pará

text: Brazil

characteristic: geographic location (country and/or sea)

text: BELÉM

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: recovered

characteristic: host disease outcome

text: diseased

text: Homo sapiens

text: female

text: not provided

characteristic: organism

characteristic: title


text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Scotland

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

characteristic: SRA accession

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1606221 of study ERP017012.

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: organism

text: A comprehensive sequencing evaluation of the fecal microbial composition and functional perturbation in the diarrhea condition of suckling piglets.

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.1_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: Phascolarctobacterium succinatutens

text: Phascolarctobacterium succinatutens

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium;s__Phascolarctobacterium succinatutens

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.10_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: Bilophila wadsworthia

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Bilophila wadsworthia

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila;s__Bilophila wadsworthia

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.11_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.12_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.13_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Solobacterium sp.

text: uncultured Solobacterium sp.

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Solobacterium;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.14_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.16_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.17_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.18_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1606221 of study ERP017012.

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Clostridia bacterium

text: A comprehensive sequencing evaluation of the fecal microbial composition and functional perturbation in the diarrhea condition of suckling piglets.

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.19_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Prevotella sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Prevotella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.2_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.20_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroides sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroides sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides coprophilus

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.21_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Sutterella sp.

text: uncultured Sutterella sp.

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Sutterella;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.22_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.23_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.24_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.26_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.27_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1606221 of study ERP017012.

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: Butyricimonas virosa

characteristic: organism

text: A comprehensive sequencing evaluation of the fecal microbial composition and functional perturbation in the diarrhea condition of suckling piglets.

characteristic: project name

characteristic: sample derived from

text: Butyricimonas virosa

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Butyricimonas;s__Butyricimonas virosa

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.28_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.29_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: Lactobacillus amylovorus

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Lactobacillus amylovorus

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus amylovorus

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.3_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.30_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.4_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Oscillibacter sp.

text: uncultured Oscillibacter sp.

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Oscillospiraceae;g__Oscillibacter;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.5_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Lachnoclostridium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnoclostridium sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Lachnoclostridium;s__[Clostridium] asparagiforme

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.7_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Fusobacterium sp.

text: uncultured Fusobacterium sp.

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606221_bin.8_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1606221 of study ERP017012.

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured Odoribacter sp.

characteristic: organism

text: A comprehensive sequencing evaluation of the fecal microbial composition and functional perturbation in the diarrhea condition of suckling piglets.

characteristic: project name

characteristic: sample derived from

text: uncultured Odoribacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Odoribacter;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606221_bin.9_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1606222 of study ERP017012.

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606222_bin.1_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Pig digestive system

text: EBI-EMG

text: CheckM

characteristic: contamination score

characteristic: description

text: Feces

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: pig gut metagenome

characteristic: isolation source

text: Intestine

characteristic: local environmental context

text: pig gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR1606222_bin.10_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Pig digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

text: Feces

text: China

text: metagenome-assembled genome

text: pig gut metagenome

text: Intestine

text: pig gut metagenome

text: uncultured Bacteroidales bacterium

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: ERR1606222_bin.12_metaWRAP_v1.3_MAG

characteristic: title