characteristic: ENA-CHECKLIST

characteristic: External Id

text: CSIC

text: public

characteristic: collection date

text: cattle

text: RUSITEC supplemented with oregano oil, yeast or a combination of both

text: Anaerobic

characteristic: environment (biome)

text: Body fluid

characteristic: environment (feature)

text: domestic cow

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Bos taurus

characteristic: organism

text: Evaluation of a Colombian oregano oil (Lippia origanoides Kunth) and a novel yeast product from Pichia guilliermondii, alone or in combination, on rumen fermentation, methanogenesis and microbiome in the Rumen Simulation Technique

characteristic: project name

text: Bos taurus

text: Ion Torrent Amplicon Sequencing

characteristic: sequencing method

text: RUSITEC-OreganoYeast

characteristic: title


Acor

status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Acor

tag: Namespace:INRAE Toulouse

characteristic: Submitter Id

text: Ardisia cornudentata leaf

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: Belgium

text: Ghent University Botanic Garden, Ghent, Belgium

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: Inglis et al., 2018 (doi:10.1371/journal.pone.0206085)

characteristic: nucleic acid extraction

text: Ardisia cornudentata

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample from Ardisia cornudentata for metagenome analysis. Collected from the Ghent University Botanical Garden (BE), voucher 19862434

text: Ardisia cornudentata

text: Illumina WGS

text: Ardisia cornudentata leaf


Amam

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

text: Amam

text: Ardisia mamillata leaf

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Ardisia mamillata

text: plant-associated

text: Leaf sample form Ardisia mamillata for metagenome analysis. Collected from the Ghent University Bontaical Garden (BE), voucher 19730151

text: Ardisia mamillata

text: Illumina WGS

text: Ardisia mamillata leaf


Avir

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Avir

text: Ardisia virens leaf

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: United Kingdom

text: Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom

text: metagenome-assembled genome

text: Ardisia virens

characteristic: organism

text: plant-associated

text: Leaf sample form Ardisia virens for metagenome analysis. Collected from the Royal Botanic Garden Edinburgh (UK), voucher 200420025

characteristic: project name

text: Ardisia virens

text: Illumina WGS

characteristic: sequencing method

text: Ardisia virens leaf

characteristic: title


Fhom

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Fhom

characteristic: Submitter Id

text: Fadogia homblei leaf

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: Roodeplaat, Pretoria, South Africa

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: nucleic acid extraction

text: Fadogia homblei

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample form Fadogia homblei for metagenome analysis. Collected from Roodeplaat (SA), vouchered at Pretoria University, voucher 128010

text: Fadogia homblei

text: Illumina WGS

text: Fadogia homblei leaf


Phoc

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

text: public

text: Phoc

text: Pavetta hochstetteri leaf

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Pavetta gardeniifolia

text: plant-associated

text: Leaf sample form Pavetta hochstetteri for metagenome analysis. Royal Botanic Garden Edinburgh (UK), voucher 19671929

text: Pavetta gardeniifolia

text: Illumina WGS

text: Pavetta hochstetteri leaf


Prev

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Prev

text: Pavetta revoluta leaf

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: South Africa

text: The Manie van der Schijff Botanic Garden, Pretoria, South Africa

text: metagenome-assembled genome

text: Pavetta revoluta

characteristic: organism

text: plant-associated

text: Leaf sample from Pavetta revoluta for metagenome analysis. Collected at the Manie van der Schijff Botanic Garden, Pretoria (SA).

characteristic: project name

text: Pavetta revoluta

text: Illumina WGS

characteristic: sequencing method

text: Pavetta revoluta leaf

characteristic: title


Pter

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pter

characteristic: Submitter Id

text: Pavetta ternifolia leaf

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: Belgium

text: Meise Botanic Garden, Meise, Belgium

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: nucleic acid extraction

text: Pavetta ternifolia

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample from Pavetta ternifolia for metagenome analysis. Collected at the Meise Botanic Garden (BE), voucher 2002160529

text: Pavetta ternifolia

text: Illumina WGS

text: Pavetta ternifolia leaf


Pcap

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

text: Pcap

text: Psychotria capensis leaf

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Psychotria capensis

text: plant-associated

text: Leaf sample from Psychotria capensis for metagenome analysis. Collected at the Manie van der Schijff Botanic Garden, Pretoria (SA).

text: Psychotria capensis

text: Illumina WGS

text: Psychotria capensis leaf


Pzom

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Pzom

text: Psychotria zombamontana leaf

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: South Africa

text: metagenome-assembled genome

text: Psychotria zombamontana

characteristic: organism

text: plant-associated

text: Leaf sample from Psychotria zombamontana for metagenome analysis. Collected at the Manie van der Schijff Botanic Garden, Pretoria (SA).

characteristic: project name

text: Psychotria zombamontana

text: Illumina WGS

characteristic: sequencing method

text: Psychotria zombamontana leaf

characteristic: title


Vdry

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vdry

characteristic: Submitter Id

text: Vangueria dryadum leaf

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: Lowveld National Botanic Gardens, Mbombela, South Africa

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: nucleic acid extraction

text: Vangueria dryadum

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample from Vangueria dryadum for metagenome analysis. Collected at the Lowveld National Botanic Gardens (SA), vouchered at Pretoria University, voucher 128005

text: Vangueria dryadum

text: Illumina WGS

text: Vangueria dryadum leaf


Vesc

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

text: public

text: Vesc

text: Vangueria esculenta leaf

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Meise Botanic Garden, Meise, Belgium

text: metagenome-assembled genome

characteristic: investigation type

text: Vangueria esculenta

text: plant-associated

text: Leaf sample from Vangueria esculenta for metagenome analysis. Collected at the Meise Botanic Garden (BE), voucher 2012116870

text: Vangueria esculenta

text: Illumina WGS

text: Vangueria esculenta leaf


VinfVM

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: VinfVM

text: Vangueria infausta VM leaf

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: Voortrekker Monument, Pretoria, South Africa

text: metagenome-assembled genome

text: Vangueria infausta

characteristic: organism

text: plant-associated

text: Leaf sample from Vangueria infausta for metagenome analysis. Collected at Voortrekker Monument, Pretoria (SA), vouchered at Pretoria University, voucher 126086

characteristic: project name

text: Vangueria infausta

text: Illumina WGS

characteristic: sequencing method

text: Vangueria infausta VM leaf

characteristic: title


VinfLN

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

text: VinfLN

characteristic: Submitter Id

text: Vangueria infausta LN leaf

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: Inglis et al., 2018 (doi:10.1371/journal.pone.0206085)

characteristic: nucleic acid extraction

text: Vangueria infausta

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample from Vangueria infausta for metagenome analysis. Collected at Lowveld National Botanic Gardens (SA), vouchered at Pretoria University, voucher 128003

text: Vangueria infausta

text: Illumina WGS

text: Vangueria infausta LN leaf


Vmac

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

text: Vmac

text: Vangueria macrocalyx leaf

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Vangueria macrocalyx

text: plant-associated

text: Leaf sample from Vangueria macrocalyx for metagenome analysis. Collected at the Lowveld National Botanic Gardens (SA), vouchered at Pretoria University, voucher 128006

text: Vangueria macrocalyx

text: Illumina WGS

text: Vangueria macrocalyx leaf


VmadSA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: VmadSA

text: Vangueria madagascariensis SA leaf

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: metagenome-assembled genome

text: Vangueria madagascariensis

characteristic: organism

text: plant-associated

text: Leaf sample from Vangueria madagascariensis for metagenome analysis. Collected at the Lowveld National Botanic Gardens (SA), vouchered at Pretoria University, voucher 128004

characteristic: project name

text: Vangueria madagascariensis

text: Illumina WGS

characteristic: sequencing method

text: Vangueria madagascariensis SA leaf

characteristic: title


VmadE

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

text: VmadE

characteristic: Submitter Id

text: Vangueria madagascariensis EBG leaf

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: United Kingdom

text: Royal Botanic Garden Edinburgh, Edinburgh, United Kingdom

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: nucleic acid extraction

text: Vangueria madagascariensis

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample form Vangueria madagascariensis for metagenome analysis. Collected from the Royal Botanic Garden Edinburgh (UK), voucher 19715346

text: Vangueria madagascariensis

text: Illumina WGS

text: Vangueria madagascariensis EBG leaf


VmadM

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

text: public

text: VmadM

text: Vangueria madagascariensis BGM leaf

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Meise Botanic Garden, Meise, Belgium

text: metagenome-assembled genome

characteristic: investigation type

text: Vangueria madagascariensis

text: plant-associated

text: Leaf sample from Vangueria madagascariensis for metagenome analysis. Collected at the Meise Botanic Garden (BE), voucher 19584419

text: Vangueria madagascariensis

text: Illumina WGS

text: Vangueria madagascariensis BGM leaf


characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Vangueria pygmaea 08 leaf

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: Cullinan, South Africa

text: metagenome-assembled genome

text: Vangueria pygmaea

characteristic: organism

text: plant-associated

text: Leaf sample from Vangueria pygmaea for metagenome analysis. Collected at Cullinan (SA), vouchered at Pretoria University, voucher 126008

characteristic: project name

text: Vangueria pygmaea

text: Illumina WGS

characteristic: sequencing method

text: Vangueria pygmaea 08 leaf

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vangueria pygmaea 88 leaf

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: Cullinan, South Africa

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

characteristic: nucleic acid extraction

text: Vangueria pygmaea

text: plant-associated

characteristic: plant-associated environmental package

text: Leaf sample from Vangueria pygmaea for metagenome analysis. Collected at Cullinan (SA), vouchered at Pretoria University, voucher 126088

text: Vangueria pygmaea

text: Illumina WGS

text: Vangueria pygmaea 88 leaf


Vran

characteristic: ENA-CHECKLIST

characteristic: External Id

text: INRAE Toulouse

text: public

text: Vran

text: Vangueria randii leaf

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Vangueria randii

text: plant-associated

text: Leaf sample from Vangueria randii for metagenome analysis. Collected at the Lowveld National Botanic Gardens (SA), vouchered at Pretoria University, voucher 128008

text: Vangueria randii

text: Illumina WGS

text: Vangueria randii leaf


Vsou

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Vsou

text: Vangueria soutpansbergensis leaf

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: metagenome-assembled genome

text: Vangueria soutpansbergensis

characteristic: organism

text: plant-associated

text: Leaf sample from Vangueria soutpansbergensis for metagenome analysis. Collected at the Lowveld National Botanic Gardens (SA), vouchered at Pretoria University, voucher 128002

characteristic: project name

text: Vangueria soutpansbergensis

text: Illumina WGS

characteristic: sequencing method

text: Vangueria soutpansbergensis leaf

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles gambiae

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


Pcal

characteristic: ENA-FIRST-PUBLIC

text: INRAE Toulouse

text: public

text: Pcal

text: P. caledonica isolate R-49542

characteristic: description

text: Fadogia homblei

characteristic: host scientific name

text: Fadogia homblei leaves

text: Paraburkholderia caledonica

text: Paraburkholderia caledonica

characteristic: strain


FhoA

characteristic: ENA-LAST-UPDATE

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: FhoA

text: P. caledonica isolate R-82532

text: Fadogia homblei

text: Fadogia homblei leaves

text: Paraburkholderia caledonica

text: Paraburkholderia caledonica


text: University Medical Center Groningen

text: public

tag: Namespace:University Medical Center Groningen

text: Netherlands,

characteristic: country

characteristic: genotype

text: human

characteristic: host

text: Yes

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: University Medical Center Groningen

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Netherlands,

text: human

text: Yes

text: BAL

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


Acor symbiont

characteristic: ENA-FIRST-PUBLIC

text: INRAE Toulouse

text: public

text: Acor symbiont

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S,16S and 5S rRNA genes and at least 18 tRNAs.

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

text: Sequence homology, nucleotide composition, coverage, marker genes

characteristic: binning parameters

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Ardisia cornudentata

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Ardisia cornudentata leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Caballeronia sp.

text: Rubiaceae and Primulaceae leaf symbionts

characteristic: project name

characteristic: sample derived from

text: uncultured Caballeronia sp.

text: Illumina

characteristic: sequencing method

text: 16S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: Acor symbiont


Amam symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Amam symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Ardisia mamillata

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: Belgium

text: metagenome

text: Ardisia mamillata leaf

text: leaf metagenome

text: uncultured Caballeronia sp.

characteristic: organism

text: uncultured Caballeronia sp.

text: Illumina

text: 17S, multi-marker, whole-genome (ANI)

text: Amam symbiont

characteristic: title


Avir symbiont

text: INRAE Toulouse

text: public

text: Avir symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Ardisia virens

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Ardisia virens leaf

text: leaf metagenome

characteristic: metagenomic source

text: Candidatus Burkholderia crenata

characteristic: project name

characteristic: sample derived from

text: Candidatus Burkholderia crenata

text: Illumina

characteristic: sequencing method

text: 18S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: Avir symbiont


Phoc symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Phoc symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Pavetta hochstetteri

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: United Kingdom

text: metagenome

text: Pavetta hochstetteri leaf

text: leaf metagenome

text: uncultured Caballeronia sp.

characteristic: organism

text: uncultured Caballeronia sp.

text: Illumina

text: 19S, multi-marker, whole-genome (ANI)

text: Phoc symbiont

characteristic: title


Vdry symbiont

text: INRAE Toulouse

text: public

text: Vdry symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Vangueria dryadum

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Vangueria dryadum leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Paraburkholderia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Paraburkholderia sp.

text: Illumina

characteristic: sequencing method

text: 20S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: Vdry symbiont


Vesc symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vesc symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Vangueria esculenta

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: Belgium

text: metagenome

text: Vangueria esculenta leaf

text: leaf metagenome

text: uncultured Paraburkholderia sp.

characteristic: organism

text: uncultured Paraburkholderia sp.

text: Illumina

text: 21S, multi-marker, whole-genome (ANI)

text: Vesc symbiont

characteristic: title


Vin1 symbiont

text: INRAE Toulouse

text: public

text: Vin1 symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Vangueria infausta

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Vangueria infausta leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Paraburkholderia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Paraburkholderia sp.

text: Illumina

characteristic: sequencing method

text: 22S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: Vin1 symbiont


Vmac symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vmac symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Vangueria macrocalyx

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: metagenome

text: Vangueria macrocalyx leaf

text: leaf metagenome

text: uncultured Paraburkholderia sp.

characteristic: organism

text: uncultured Paraburkholderia sp.

text: Illumina

text: 23S, multi-marker, whole-genome (ANI)

text: Vmac symbiont

characteristic: title


VmadSA symbiont

text: INRAE Toulouse

text: public

text: VmadSA symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Vangueria madagascariensis collected in South Africa

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Vangueria madagascariensis leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Paraburkholderia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Paraburkholderia sp.

text: Illumina

characteristic: sequencing method

text: 24S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: VmadSA symbiont


VmadE symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: VmadE symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Vangueria madagascariensis collected in the Royal Botanic Garden Edinburgh

characteristic: description

text: Temperate Biome

text: Botanic Garden

text: Leaf

text: United Kingdom

text: metagenome

text: Vangueria madagascariensis leaf

text: leaf metagenome

text: uncultured Paraburkholderia sp.

characteristic: organism

text: uncultured Paraburkholderia sp.

text: Illumina

text: 25S, multi-marker, whole-genome (ANI)

text: VmadE symbiont

characteristic: title


VmadM symbiont

text: INRAE Toulouse

text: public

text: VmadM symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Vangueria madagascariensis collected in the Meise Botanic Garden

text: Temperate Biome

characteristic: environment (biome)

text: Botanic Garden

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Vangueria madagascariensis leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Paraburkholderia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Paraburkholderia sp.

text: Illumina

characteristic: sequencing method

text: 26S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: VmadM symbiont


Vpy1 symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vpy1 symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Vangueria pygmaea voucher PRU 126008

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: metagenome

text: Vangueria pygmaea leaf

text: leaf metagenome

text: uncultured Paraburkholderia sp.

characteristic: organism

text: uncultured Paraburkholderia sp.

text: Illumina

text: 27S, multi-marker, whole-genome (ANI)

text: Vpy1 symbiont

characteristic: title


Vpyg symbiont

text: INRAE Toulouse

text: public

text: Vpyg symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Vangueria pygmaea voucher PRU 126088

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Vangueria pygmaea leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Paraburkholderia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Paraburkholderia sp.

text: Illumina

characteristic: sequencing method

text: 28S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: Vpyg symbiont


Vran symbiont

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Toulouse

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vran symbiont

characteristic: Submitter Id

characteristic: assembly quality

text: metaSpades v3.15, default settings

characteristic: assembly software

characteristic: binning parameters

text: Autometa

text: BUSCO

text: Symbiont MAG of Vangueria randii

characteristic: description

text: Temperate Biome

text: Grassland

text: Leaf

text: South Africa

text: metagenome

text: Vangueria randii leaf

text: leaf metagenome

text: uncultured Paraburkholderia sp.

characteristic: organism

text: uncultured Paraburkholderia sp.

text: Illumina

text: 29S, multi-marker, whole-genome (ANI)

text: Vran symbiont

characteristic: title


Vsou symbiont

text: INRAE Toulouse

text: public

text: Vsou symbiont

text: metaSpades v3.15, default settings

text: Autometa

characteristic: binning software

characteristic: completeness score

text: BUSCO

characteristic: completeness software

characteristic: contamination score

text: Symbiont MAG of Vangueria soutpansbergensis

text: Temperate Biome

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Leaf

characteristic: environment (material)

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Vangueria soutpansbergensis leaf

text: leaf metagenome

characteristic: metagenomic source

text: uncultured Paraburkholderia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Paraburkholderia sp.

text: Illumina

characteristic: sequencing method

text: 30S, multi-marker, whole-genome (ANI)

characteristic: taxonomic identity marker

text: Vsou symbiont


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DBSSE-ETHZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: axolotl

characteristic: common name

text: Protocols: Whole axolotl brain was flash frozen before it was embedded in a prechilled optimal cutting temperature compound. The sample was then set into a dry ice bath with isopentane until frozen and stored at -80°C. Cryosections were cut at a thickness of 10µm, adhered to Visium (10x) spatial transcriptomic (ST) slides (10x) and stored at -80°C until the following day. Tissue slices were fixed in cold methanol before being stained with hematoxylin and eosin. ST slides were imaged as recommended on a Nikon T2i at 20x using a tile scan over all slice sections. Optimal permeabilization conditions were determined by using the Tissue Optimization kit (10x), and the optimal time was found to be 52 min. Spot-captured RNA was reverse transcribed before second-strand synthesis and cDNA denaturation. qPCR was used to determine the optimal number of cDNA amplification cycles as recommended by the manufacturer. cDNA was amplified using 18 cycles before continuing to Visium spatial gene expression library construction.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

unit: centimeter

characteristic: length

text: Ambystoma mexicanum

characteristic: organism

text: Ambystoma mexicanum

text: forebrain

characteristic: organism part

text: Ambystoma mexicanum

text: white d/d

characteristic: strain

characteristic: title


HG01358 CLM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Open Genomes

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: HG01358 CLM

tag: Namespace:Open Genomes

text: human

text: 1000 Genomes / Human Pangeome individual

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex


text: DBSSE-ETHZ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: neuron

text: axolotl

characteristic: common name

text: Protocols: Axolotls were fully anesthetized and decapitated with scissors. Brain was then microdissected and snap frozen. Frozen pallium microdissections and whole pallium dissections were dissociated for generating single-nuclei gene-expression libraries following a modified protocol from 10x (Demonstrated protocol CG000365, Rev B). In brief, we prepared and precooled wash and lysis buffers before moving tissue pieces to a precooled 1.5mL tube. 50µL of lysis buffer was added to the sample and dissociated via 2-5 short pulses with an electric grinder. The pestle of the grinder was washed with a 150µl wash buffer before centrifugation for 5 min at 500xg (4°C). Supernatant was removed and the pellet gently washed with 200µl of wash buffer before centrifugation for 5 min at 500xg (4°C). Supernatant was removed and the pellet was resuspended in 50-100µl of PBS + 0.5% BSA. Resulting nuclei were then assessed (count and viability) using Trypan Blue assay, counted using the automated cell counter Countess (Thermo Fisher). For snRNAseq profiling, nuclei were diluted to an appropriate concentration to obtain approximately 2,000-10,000 nuclei per lane of a 10x microfluidic chip device. Single-nuclei cDNA was synthesized per manufacturer recommendations (10x Genomics v3.1) before continuing to library preparation with 25% of the total cDNA volume.

characteristic: description

text: adult

text: not applicable

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: dorsal pallium

text: Ambystoma mexicanum

text: White (d/d)


text: DBSSE-ETHZ

text: public

text: ArrayExpress

text: neuron

text: axolotl

text: adult

characteristic: developmental stage

text: not applicable

characteristic: isolate

text: Ambystoma mexicanum

characteristic: organism

text: Ambystoma mexicanum

text: lateral pallium

characteristic: organism part

text: Ambystoma mexicanum

text: White (d/d)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DBSSE-ETHZ

text: public

text: ArrayExpress

text: neuron

text: axolotl

text: adult

text: not applicable

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: medial pallium

text: Ambystoma mexicanum

text: White (d/d)

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF BERN

characteristic: collection date

text: domestic pig

text: stable

characteristic: environment (biome)

text: stable

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Farm

characteristic: experimental factor

text: Switzerland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: piglet

characteristic: host life stage

text: female

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Sus scrofa domesticus

text: immune responses to African swine fever virus in pigs

characteristic: project name

text: Sus scrofa domesticus

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERN

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: domestic pig

characteristic: common name

characteristic: description

text: stable

text: stable

text: Feces

text: SPF

text: Switzerland

text: Feces

text: piglet

text: female

text: host-associated

text: metagenome

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus

text: Illumina

characteristic: title


text: UNIVERSITY OF BERN

characteristic: INSDC first public

text: public

characteristic: collection date

text: domestic pig

text: stable

characteristic: environment (biome)

text: stable

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Farm

characteristic: experimental factor

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Feces

characteristic: host body site

text: piglet

characteristic: host life stage

text: male

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERN

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: domestic pig

characteristic: common name

text: stable

text: stable

text: Feces

text: SPF

text: Switzerland

text: Feces

text: piglet

text: male

text: host-associated

text: metagenome

characteristic: investigation type

text: Sus scrofa domesticus

characteristic: project name

text: Sus scrofa domesticus

text: Illumina

characteristic: sequencing method


text: ROBERT KOCH INSTITUT

characteristic: INSDC first public

text: public

tag: Namespace:ROBERT KOCH INSTITUT

text: isolate obtained from a human listeriosis case in Germany

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IIa

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DBSSE-ETHZ

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: neuron

text: axolotl

text: Protocols: Axolotls were fully anesthetized and decapitated with scissors and the brain was snap frozen. Frozen pallium microdissections and whole pallium dissections were dissociated for generating single-nuclei gene-expression libraries following a modified protocol from 10x (Demonstrated protocol CG000365, Rev B). In brief, we prepared and precooled wash and lysis buffers before moving tissue pieces to a precooled 1.5mL tube. 50µL of lysis buffer was added to the sample and dissociated via 2-5 short pulses with an electric grinder. The pestle of the grinder was washed with a 150µl wash buffer before centrifugation for 5 min at 500xg (4°C). Supernatant was removed and the pellet gently washed with 200µl of wash buffer before centrifugation for 5 min at 500xg (4°C). Supernatant was removed and the pellet was resuspended in 50-100µl of PBS + 0.5% BSA. Resulting nuclei were then assessed (count and viability) using Trypan Blue assay, counted using the automated cell counter Countess (Thermo Fisher). For snRNAseq profiling, nuclei were diluted to an appropriate concentration to obtain approximately 2,000-10,000 nuclei per lane of a 10x microfluidic chip device. Combined snRNAseq and snATACseq were generated with the Chromium Single Cell Multiome ATAC + Gene Expression kit following manufacture recommendations (10x Genomics).

text: adult

characteristic: developmental stage

text: open chromatin

characteristic: fraction

characteristic: individual

text: not applicable

characteristic: length

text: Ambystoma mexicanum

text: Ambystoma mexicanum

text: pallium

characteristic: organism part

characteristic: replicate

text: Ambystoma mexicanum

text: white (d/d)


text: DBSSE-ETHZ

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: neuron

text: axolotl

characteristic: common name

characteristic: description

text: adult

text: RNA

text: not applicable

characteristic: isolate

text: Ambystoma mexicanum

characteristic: organism

text: Ambystoma mexicanum

text: pallium

text: Ambystoma mexicanum

text: white (d/d)


pvendiensis

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JLU

characteristic: INSDC center name

text: public

text: pvendiensis

text: Pseudocitrobacter vendiensis

text: Pseudocitrobacter vendiensis

text: Pseudocitrobacter vendiensis

characteristic: strain

text: pvendiensis

characteristic: title


text: mixed

characteristic: ArrayExpress-Sex

text: Schistosoma mansoni

characteristic: ArrayExpress-Species

text: Puerto Rican strain

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Schistosoma mansoni

text: Schistosoma mansoni

text: Sporocysts after 5 days in culture

characteristic: sample description

text: Schistosoma mansoni

text: Puerto Rican strain


text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-30-04-2022-18:37:56:862-20273

tag: Namespace:MEDICAL UNIVERSITY GRAZ

characteristic: Submitter Id

text: Graz

text: human gut metagenome

text: human gut metagenome


text: public

tag: Namespace:Max Planck Institute for Evolutionary Anthropology

text: human

characteristic: common name

text: tooth from archaeological human individual

characteristic: description

text: Greece

characteristic: geographic location (country and/or sea)

text: Crete, Lasithi

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host scientific name

text: 35.183333, 25.4666670

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Evolutionary Anthropology

characteristic: INSDC center name

text: public

text: human

text: Greece

text: Crete, Lasithi

text: Homo sapiens

text: 35.183333, 25.4666670

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC last update

text: public

text: Greece

text: Crete, Lasithi

text: Homo sapiens

text: 35.183333, 25.4666670

text: Yersinia pestis

text: Yersinia pestis

characteristic: title


text: public

characteristic: INSDC status

text: Greece

text: Crete, Lasithi

text: Homo sapiens

text: 35.183333, 25.4666670

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


text: cimbiur

characteristic: INSDC first public

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P24 reverse


text: cimbiur

text: public

characteristic: SRA accession

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P48 reverse


text: cimbiur

text: public

characteristic: Submitter Id

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P84 reverse


text: cimbiur

text: public

text: kissing bug

characteristic: common name

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P128 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

characteristic: description

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P138 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

characteristic: geographic location (country and/or sea)

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P158 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

characteristic: geographic location (region and locality)

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P163 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P165 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P168 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P169 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P172 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P197 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P203 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P205 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P223 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P240 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P244 reverse


text: cimbiur

text: public

text: kissing bug

text: 12S rRNA amplicons

text: Colombia

text: Boyaca

text: Triatomine abdomen

text: Triatoma dimidiata

text: Triatoma dimidiata

text: P247 reverse


text: cimbiur

text: public

text: SL-IR miniexon gene amplicon

text: Colombia

text: Boyaca

text: Triatoma dimidiata

characteristic: host scientific name

text: Triatomine abdomen

text: Trypanosoma cruzi

text: Trypanosoma cruzi


text: public

tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: MEGAHIT; kmer set 29,49,69,89,109,119,129,149

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Patescibacteria assembled from Lake Attersse

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Parcubacteria group bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Parcubacteria group bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Austria

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Parcubacteria group bacterium

text: Parcubacteria group bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Peribacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Peribacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Austria

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Taylorbacteria bacterium

text: Candidatus Taylorbacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Patescibacteria assembled from Lake Baikal

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Russia

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Levybacteria bacterium GW2011_GWA1_37_16

text: Illumina Hiseq X Ten

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Russia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Staskawiczbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Staskawiczbacteria bacterium

text: Illumina Hiseq X Ten

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Russia

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Nomurabacteria bacterium

text: Candidatus Nomurabacteria bacterium

text: Illumina Hiseq X Ten

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Patescibacteria assembled from Lake Constance

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Taylorbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Taylorbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Parcubacteria group bacterium

text: Parcubacteria group bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: uncultured Candidatus Saccharimonas sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Candidatus Saccharimonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Uhrbacteria bacterium

text: Candidatus Uhrbacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Nomurabacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Peribacteria bacterium

text: Candidatus Peribacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Ryanbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Ryanbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Patescibacteria assembled from Lake Greifensee

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Gracilibacteria bacterium

text: Candidatus Gracilibacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Patescibacteria assembled from Lake Ikeda

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Japan

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Staskawiczbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Staskawiczbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Japan

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Patescibacteria group bacterium

text: Patescibacteria group bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Japan

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Nomurabacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Japan

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Parcubacteria group bacterium

text: Parcubacteria group bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Japan

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Magasanikbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Magasanikbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Japan

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Peribacteria bacterium

text: Candidatus Peribacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Japan

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Uhrbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Uhrbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Patescibacteria assembled from Jiricka pond

characteristic: description

text: freshwater lake

text: pond

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: uncultured Candidatus Saccharimonas sp.

text: uncultured Candidatus Saccharimonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: pond

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Nomurabacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Patescibacteria assembled from Lake Lugano

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Nomurabacteria bacterium

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Patescibacteria group bacterium UBA4664

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Patescibacteria group bacterium UBA4664

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Peribacteria bacterium

text: Candidatus Peribacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Patescibacteria assembled from Lake Medard

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Nomurabacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Magasanikbacteria bacterium

text: Candidatus Magasanikbacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Patescibacteria assembled from Lake Maggiore

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Peribacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Peribacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Nomurabacteria bacterium

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Magasanikbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Magasanikbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Uhrbacteria bacterium

text: Candidatus Uhrbacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Yanofskybacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Yanofskybacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Italy

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Patescibacteria group bacterium UBA4664

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Patescibacteria group bacterium UBA4664

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Italy

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: uncultured Candidatus Saccharimonas sp.

text: uncultured Candidatus Saccharimonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: Patescibacteria assembled from Lake Milada

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Parcubacteria group bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Parcubacteria group bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: candidate division WWE3 bacterium

text: candidate division WWE3 bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Patescibacteria group bacterium UBA4664

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Patescibacteria group bacterium UBA4664

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Nomurabacteria bacterium

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

text: Candidatus Magasanikbacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Magasanikbacteria bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Patescibacteria assembled from Lake Mondsee

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Austria

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Nomurabacteria bacterium

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach


text: public

text: coverage and kmer

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: freshwater lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: fresh water

characteristic: environment (material)

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Freshwater lake

text: freshwater metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

characteristic: binning software

text: checkm

text: Patescibacteria assembled from Lake Most

characteristic: description

text: freshwater lake

text: lake

text: fresh water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Freshwater lake

text: freshwater metagenome

text: Candidatus Nomurabacteria bacterium

text: Candidatus Nomurabacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach