characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM Gustave Roussy institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Down syndrome

text: trisomic with GATA1s mutation

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: induced pluripotent stem cell

text: Homo sapiens


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Palaeogenetics

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre for Palaeogenetics

characteristic: Submitter Id

text: woolly mammoth

characteristic: common name

text: woolly mammoth

text: Mammuthus primigenius

characteristic: organism

text: Mammuthus primigenius

text: woolly mammoth

characteristic: title


E-MTAB-11745:Pooled hemocytes

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11745:Pooled hemocytes

tag: Namespace:Department of Comparative Physiology, Science for Life Laboratory, Uppsala University

unit: gram

characteristic: body weight

text: ArrayExpress

text: hemocyte

unit: degree

characteristic: collection latitude

characteristic: collection longitude

text: signal crayfish

text: Protocols: Freshwater crayfish Pacifastacus leniusculus (adult intermolt males) were obtained from lake Erken (located in east-central Sweden near the Baltic coast (59.8 N 18.6 E). The animals were maintained in the crayfish facility at department of Organismal Biology, Uppsala University, in running tap water at 10-12°C, in a 12:12 light:dark cycle. The water was aerated with plastic tubing and ceramic oxygen stones. The animals were fed once a week. Hemocytes were collected by bleeding 2 mL in a 1:1 volume with anti-coagulant solution (0.14 M NaCl, 0.1 M glucose, 30 mM trisodium citrate, 26 mM citric acid, 10 mM EDTA, pH 4.6) using a 18 G needle (BD microlane). Samples were centrifuged for 5 min at 800 × g. The supernatant was discarded, and the cell pellet washed in 2 mL 0.15 M NaCl. The wash-ing was repeated two more times, and finally the hemocytes were suspended in 1 mL 0.15 M NaCl with 0.04% BSA and used as hemocyte sample for scRNA-seq. The cell numbers in both samples were determined with a hemocytometer. Sequencing libraries were prepared using Chromium Single Cell 3’ reagent kit v3 (cat# 1000075/1000073/120262, 10xGenomics) according to the manufacturer’ protocol (CG000183 Single Cell 3’ reagent Kit User Guide, v3 chemistry, 10x Genomics).

text: adult

text: wild type genotype

text: Sweden, Lake Erken

characteristic: geographical location

text: laboratory aquarium since Sep 2020

characteristic: growth condition

text: pooled hemocytes from 4 individuals

characteristic: individual

text: not applicable

characteristic: isolate

text: Pacifastacus leniusculus

text: Pacifastacus leniusculus

text: hematopoietic system

characteristic: organism part

characteristic: sampling date

text: Pacifastacus leniusculus

text: male

characteristic: sex

text: Pooled hemocytes


E-MTAB-11745:Pooled HPT including APC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Comparative Physiology, Science for Life Laboratory, Uppsala University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11745:Pooled HPT including APC

text: ArrayExpress

characteristic: broker name

text: hematopoietic cell

text: signal crayfish

text: Protocols: Freshwater crayfish Pacifastacus leniusculus (adult intermolt males) were obtained from lake Erken (located in east-central Sweden near the Baltic coast (59.8 N 18.6 E). The animals were maintained in the crayfish facility at department of Organismal Biology, Uppsala University, in running tap water at 10-12°C, in a 12:12 light:dark cycle. The water was aerated with plastic tubing and ceramic oxygen stones. The animals were fed once a week. Each Hpt and APC was dissected from the crayfish, and digested into single cells by incubation in 300 μl of 0.1% collagenase (Type I), 0.1% collagenase (Type IV) in CPBS at room temperature for 20 min on a rotating plate. After collagenase treatment the tissue was gently passed 10–20 times through a Pasteur pipette and centrifuged at 800 g for 5 min to remove the collagenase solution. The pellet was washed once in 1 mL 0.15 M NaCl with 0.04% BSA by centrifugation at 800 x g for 5 min, suspended in 1 mL 0.15 M NaCl with 0.04% BSA and then filtered through a 40 mm cell strainer. Isolated cells from four animals were pooled to the HPT sample used for scRNA-seq. Sequencing libraries were prepared using Chromium Single Cell 3’ reagent kit v3 (cat# 1000075/1000073/120262, 10xGenomics) according to the manufacturer’ protocol (CG000183 Single Cell 3’ reagent Kit User Guide, v3 chemistry, 10x Genomics).

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Sweden, Lake Erken

text: laboratory aquarium since Sep 2020

text: pooled HPT including APC from 4 individuals

text: not applicable

text: Pacifastacus leniusculus

text: Pacifastacus leniusculus

text: hematopoietic system

text: Pacifastacus leniusculus

text: male

text: Pooled HPT including APC


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: not provided

text: not provided

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Kentucky

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: food sample

text: France

text: not provided

text: Gallus gallus

text: not provided

characteristic: isolate

text: chicken meat - carcass

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Newport


characteristic: ENA-LAST-UPDATE

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

text: food sample

characteristic: description

text: France

text: not provided

text: Gallus gallus

text: not provided

text: chicken meat - carcass

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Anatum


text: ANSES

text: public

characteristic: Submitter Id

characteristic: collection date

text: farm environment

text: Reunion

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Gallus gallus

text: not provided

text: poultry - broilers

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Kentucky


text: ANSES

text: public

text: eco-system

text: France

text: not provided

text: not provided

characteristic: host scientific name

text: not provided

text: digestate

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Kentucky

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: ANSES

text: public

text: not provided

text: not provided

text: France

text: not provided

text: not provided

text: not provided

text: not provided

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Javiana

characteristic: title


text: ANSES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: not provided

text: France

text: not provided

text: not provided

text: not provided

characteristic: isolate

text: not provided

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: ParatyphiB


characteristic: ENA-LAST-UPDATE

text: Louvain Drug Research Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Louvain Drug Research Institute

text: house mouse

characteristic: common name

text: mouse gut microbiota

characteristic: description

text: gut microbiome

characteristic: environment (biome)

text: caecum

characteristic: environment (feature)

text: caecal content

characteristic: environment (material)

text: Belgium

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: CD

characteristic: host diet

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Mus musculus

text: Gut microbes and food reward motivation

characteristic: project name

text: Mus musculus

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Louvain Drug Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: mouse gut microbiota

text: gut microbiome

text: caecum

text: caecal content

text: Belgium

characteristic: geographic location (country and/or sea)

text: HFD

text: host-associated

text: Mus musculus

characteristic: organism

text: Gut microbes and food reward motivation

text: Mus musculus

text: Illumina

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Molecular Microbiology John Innes Centre

text: ArrayExpress

characteristic: broker name

text: Protocols: For each sample 100 mL of culture was crosslinked with 1% formaldehyde (Sigma #F8775) incubated for 30 min at 30�C with shaking and neutralized with 125 mM of glycine for 5 min on ice. The cells were washed twice in ice-cold PBS pH 7.4 (Sigma #P4417-50TAB) and resuspended in 1 mL of IP lysis Buffer (10 mM Tris-HCl pH 8.0 50 mM NaCl 0.8% Triton X-100 1x protease inhibitor (Roche #11836170001)). A. vinelandii was grown at 30�C and 250 rpm in NIL medium (containing 0.2 g/L MgCl2 90 mg/L CaCl2 0.8 g/L KH2PO4 0.2 g/L K2HPO4 14 mg/L Na2SO4 120 mg/L Fe2(SO4)3 and 2.4 mg/L Na2MoO4) supplemented with 2% sucrose. To examine regulation of alternative nitrogenases in the absence of molybdenum trace Mo (up to 8 ppb) was selectively removed by filtering NIL media through activated charcoal. For with-vanadium conditions vanadium was added at 1uM. Cells were then lysed and the DNA sheared by sonication 15 times at an amplitude of 8 microns to obtain fragments between 200 and 1000 base pairs long. The clarified lysate was diluted to 1/3 to a volume of 1.5 ml with IP buffer (50 mM Tris-HCl pH 8.0 250 mM NaCl 0.8% Triton X-100 1x protease inhibitor) prior immuno-precipitation with EZview Red ANTI-FLAG M2 affinity gel (Sigma#F2426) following the manufacturer instructions. Briefly 45 ?L of beads were washed three times with ice cold TBS (Sigma # T5030-50TAB) and added to the 1500 ?L of cross-linked lysate and incubated in a rotating wheel at 4�C until for 18 hours then washed four times with IP Buffer. The DNA fragments were then eluted from the beads with 100 ?L of IP Elution buffer (50 mM Tris-HCl pH 7.6 10 mM EDTA 1% SDS) overnight at 65�C. The beads were removed by centrifugation and the volume of the supernatant adjusted to 200 ?L with TE buffer (10 mM Tris-HCl pH 7.4 1 mM EDTA) and treated with 3 ?L of proteinase K 10mg/ml (Roche # 03115879001) for 2 hours at 55�C. The samples were cleaned by phenol phenol/chloroform extraction and purified using a Macherey-Nagel NucleoSpin� Gel and PCR Clean-up (Catalog#740609.50) following the manufactured instructions. Library construction was carried out by an external contractor (Genewiz) using the Illumina TruSeq ChIP library preparation kit.

characteristic: description

text: wild type genotype

characteristic: genotype

text: NIL medium

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Azotobacter vinelandii

text: Azotobacter vinelandii

text: whole organism

characteristic: organism part

text: Azotobacter vinelandii

text: DJ

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Molecular Microbiology John Innes Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild type genotype

text: NIL medium

text: not applicable

text: Azotobacter vinelandii

text: Azotobacter vinelandii

text: whole organism

text: Azotobacter vinelandii

text: DJ


name: E-MTAB-11726:strain DM4, dichloromethane utilization, biological replicate 1

characteristic: INSDC last update

text: public

tag: Namespace:CNRS / Universite de Strasbourg UMR7156, Genetique Moleculaire, Genomique, Microbiologie,

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: Methylorubrum extorquens wild-type strain DM4 were harvested at mid-phase (OD at 600nm of 0.15). Methylorubrum extorquens wild-type strain DM4 was grown aerobically at 30°C in in 1.2L Erlenmeyer flasks closed with gas-tight screw caps with Mininert R valves (Supelco) in M3 media (Roselli et al , 2013: https://doi.org/10.1371/journal.pone.0056598) supplemented with methanol or DCM provided at 10mM as the sole source of carbon and energy in independent biological duplicates. For 220-mL cultures, one-carbon growth substrates were supplied at 10 mM final concentration, by adding either aqueous solutions of 2.75 mL of filter-sterilized aqueous stock solution of methanol (800 mM), or 141μL of neat dichloromethane. Cells were harvested upon reaching mid-exponential phase. Growth was stopped by addition of 27.5 mL stabilization buffer. This buffer was prepared by mixing 5 mL of phenol and 5mL of 1 M sodium acetate pH 5.5, then after centrifugation at 1,800 g for 3 min, 5 mL of the lower phase was mixed with 95 mL of absolute ethanol. Resulting cell suspensions were centrifuged at 5,000 rpm for 5 min at 4◦C, and suspended in 10 mL TE containing 2 mg.mL−1lysozyme (Euromedex). After 15 min incubation at 37◦C, each cell suspension was centrifuged 10 min at 4◦C, the obtained pellet resuspended in 10 mL of Trizol (Invitrogen), and 2.5 mL of chloroform was added. RNA was precipitated with isopropanol and washed with ethanol (70%), then resuspended in DEPC-water. RNA were then treated with a TURBO DNA-free kit (Ambion) to remove residual genomic DNA. Differential (dRNA-seq) library construction. Ribosomal RNAs-depleted RNA samples were poly(A)-tailed using poly(A) polymerase for library construction in a strand specific manner. Briefly, after a treatment with 5’ monophosphate-dependent RNA exonuclease (TEX), the four samples were split in two: one part was treated with RNA 5' polyphosphatase (5'PP) to remove the 5'PPP structures while the other part was left untreated, and used for “+” and “-“ library construction, respectively. RNA adapter was ligated to RNA with a 5’ monophosphate end. Oligo(dT)-adapter primer was used to perform synthesis of first strand cDNA with M-MLV reverse transcriptase. Resulting cDNAs were PCR-amplified with high fidelity DNA polymerase and barcoded using 3’ sequencing adaptors. After cDNAs purification using the Agencourt AMPure XP kit (Beckman Coulter Genomics) and quality-checked using capillary electrophoresis (Shimadzu MultiNA microchip electrophoresis system), the cDNA were pooled and ready to be sequenced.

text: wild type genotype

text: logarithmic phase culture

text: not applicable

text: Methylorubrum extorquens

characteristic: organism

text: Methylorubrum extorquens

text: Methylorubrum extorquens


name: E-MTAB-11726:strain DM4, dichloromethane utilization, biological replicate 2

characteristic: ENA-LAST-UPDATE

text: CNRS / Universite de Strasbourg UMR7156, Genetique Moleculaire, Genomique, Microbiologie,

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild type genotype

text: logarithmic phase culture

text: not applicable

text: Methylorubrum extorquens

text: Methylorubrum extorquens

text: Methylorubrum extorquens

characteristic: title


name: E-MTAB-11726:wild-type DM4 strain, methanol utilization, biological replicate 1

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

characteristic: description

text: wild type genotype

text: logarithmic phase culture

text: not applicable

text: Methylorubrum extorquens

text: Methylorubrum extorquens

text: Methylorubrum extorquens


name: E-MTAB-11726:wild-type DM4 strain, methanol utilization, biological replicate 2

text: public

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: logarithmic phase culture

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Methylorubrum extorquens

text: Methylorubrum extorquens

text: Methylorubrum extorquens


characteristic: ENA-CHECKLIST

text: CHINESE ACADEMY OF SCIENCES

text: public

tag: Namespace:CHINESE ACADEMY OF SCIENCES

characteristic: collection date

text: Soil microorganisms

text: broad-leaved forest

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: metagenome

characteristic: project name

text: soil metagenome

text: Hiseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Yingtan Red Soil


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: Submitter Id

text: fecal sample

characteristic: description

text: human-gut

text: human-gut

text: human-gut

text: Netherlands

text: not provided

text: not provided

text: intervention

characteristic: group

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: human feces metagenome

characteristic: organism

text: NOBLE

text: human feces metagenome

text: Illumina-hiseq

text: Baseline

characteristic: timepoint

characteristic: title


characteristic: ENA-CHECKLIST

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

characteristic: collection date

text: fecal sample

text: human-gut

characteristic: environment (biome)

text: human-gut

characteristic: environment (feature)

text: human-gut

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: intervention

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: human feces metagenome

text: NOBLE

characteristic: project name

text: human feces metagenome

text: Illumina-hiseq

characteristic: sequencing method

text: Lctf


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fecal sample

characteristic: description

text: human-gut

text: human-gut

text: human-gut

text: Netherlands

text: not provided

text: not provided

text: intervention

text: human-gut

text: mimarks-survey

text: human feces metagenome

text: NOBLE

text: human feces metagenome

text: Illumina-hiseq


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: fecal sample

text: human-gut

characteristic: environment (biome)

text: human-gut

characteristic: environment (feature)

text: human-gut

characteristic: environment (material)

text: Netherlands

text: not provided

text: not provided

text: placebo

characteristic: group

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: human feces metagenome

characteristic: organism

text: NOBLE

text: human feces metagenome

text: Illumina-hiseq

text: Placebo

characteristic: timepoint

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: fecal sample

text: human-gut

text: human-gut

text: human-gut

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: intervention

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: human feces metagenome

text: NOBLE

characteristic: project name

text: human feces metagenome

text: Illumina-hiseq

characteristic: sequencing method

text: Baseline


characteristic: ENA-CHECKLIST

text: OXFORD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Lgr5+ cells in the ApcMin;Lgr5DTR mice were ablated with a single intraperitoneal dose of Diphtheria Toxin (DT) (Cat # 322326-1mg, Merck) in saline (50 μg kg−1). The ApcMin;Lgr5DTR mice were culled 24 hours and 5 days post DT. Untreated ApcMin control mice were aged until symptomatic, then culled. Mice were approximately 4 months of age. The entire intestinal tract was removed and divided into small intestine (proximal, middle and distal) and colon. The intestines were flushed with PBS, opened longitudinally using a gut preparation apparatus (Rudling et al 2006). For fresh frozen samples, individual polyps were cut out with a scalpel and snap frozen in liquid nitrogen for subsequent RNA extraction. The remaining tissue was fixed overnight in 10% neutral buffered formalin (Merck) and processed into FFPE blocks for subsequent histological analysis. For FFPE samples, the tissue was fixed overnight in 10% neutral buffered formalin (Merck) and processed into FFPE blocks. 4um sections were cut and H and E stained to identify polyps. Tissue from identified polyps were removed from deparaffinised slides with a needle and collected. For fresh frozen samples, RNA was extracted using the RNeasy Micro Kit from Qiagen (74004) and DNase treatment was performed using the DNA-free kit from Life Technologies (AM1906). For FFPE samples, RNA was extracted using the High Pure FFPET RNA Isolation Kit (Roche). 3'RNAseq libraries were prepared using the QuantSeq 3' mRNA-Seq Library Prep Kit (Lexogen, Austria). RNA input varying from 20-1000ng and 14-20 PCR cycles were used. Library quality and quantity were assessed using the HS 1000 DNA TapeStation (Agilent) and DNA High Sensitivity Qubit Assay (ThermoFisher) respectively.

characteristic: description

text: adult

characteristic: developmental stage

text: intestinal polyp

characteristic: disease

characteristic: genotype

characteristic: individual

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: duodenum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: adult

text: intestinal polyp

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ileum

text: neoplasm

text: Mus musculus

text: female

text: frozen specimen

characteristic: title


text: OXFORD

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: intestinal polyp

characteristic: disease

characteristic: genotype

characteristic: individual

text: not applicable

text: Mus musculus

text: Mus musculus

text: jejunum

text: neoplasm

text: Mus musculus

text: female

text: frozen specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD

text: public

text: ArrayExpress

text: house mouse

text: adult

text: intestinal polyp

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: duodenum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

characteristic: strain


text: OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: intestinal polyp

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ileum

text: neoplasm

text: Mus musculus

text: male

text: frozen specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

text: public

tag: Namespace:MURDOCH UNIVERSITY

characteristic: collection date

text: Packed Bioreactor t1

characteristic: description

text: Entic Haplustolls

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: NucleoSpin soil genomic DNA extraction kit

characteristic: nucleic acid extraction

text: bioreactor metagenome

characteristic: pcr primers

text: Bioreactors for creating spatial organisation in the soil microbiome

characteristic: project name

text: bioreactor metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Packed Bioreactor t2

text: Entic Haplustolls

text: Forest

text: Soil

text: Colombia

text: mimarks-survey

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: Illumina

text: 16S rRNA

characteristic: title


text: MURDOCH UNIVERSITY

text: public

text: Packed Bioreactor t3

characteristic: description

text: Entic Haplustolls

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

characteristic: nucleic acid extraction

text: bioreactor metagenome

characteristic: pcr primers

characteristic: project name

text: bioreactor metagenome

text: Illumina

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Packed Bioreactor t4

text: Entic Haplustolls

text: Forest

text: Soil

text: Colombia

text: mimarks-survey

text: bioreactor metagenome

text: bioreactor metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


text: MURDOCH UNIVERSITY

text: public

characteristic: collection date

text: Inocula after normalization

characteristic: description

text: Entic Haplustolls

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: Illumina

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Soil Rhizosphere P2

text: Entic Haplustolls

text: Forest

text: Soil

text: Colombia

text: mimarks-survey

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr primers

characteristic: project name

text: soil metagenome

text: Illumina

text: 16S rRNA


text: MURDOCH UNIVERSITY

text: public

characteristic: collection date

text: Soil Rhizosphere P3

characteristic: description

text: Entic Haplustolls

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Soil Rhizosphere P1

text: Entic Haplustolls

text: Forest

text: Soil

text: Colombia

text: mimarks-survey

characteristic: miscellaneous environmental package

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: 16S rRNA

characteristic: title


text: MURDOCH UNIVERSITY

text: public

characteristic: collection date

text: Soil initial

characteristic: description

text: Entic Haplustolls

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: nucleic acid extraction

text: soil metagenome

characteristic: pcr primers

characteristic: project name

text: soil metagenome

text: Illumina

text: 16S rRNA

text: Soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MURDOCH UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Batch bioreactor

text: Entic Haplustolls

text: Forest

text: Soil

text: Colombia

text: mimarks-survey

text: bioreactor metagenome

text: bioreactor metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Bb


text: LBMC UMR5239

text: public

tag: Namespace:LBMC UMR5239

text: house mouse

characteristic: common name

text: mouse dissected embryonic subpart of tooth germ

characteristic: description

text: 15.0 dpc

text: the first molar tooth germ was dissected from the rest of the molar row, and further cut into buccal and lingual halves. Halves from Left and right germs were pooled.

text: Mus musculus

characteristic: organism

text: Mus musculus

text: F

characteristic: sex

text: CD1, Charles River

characteristic: strain

text: lower first molar germ, buccal part, embryo#3, weight 359 mg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, lingual part, embryo#3, weight 359 mg


characteristic: External Id

text: LBMC UMR5239

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, buccal part, embryo#4, weight 359 mg


text: LBMC UMR5239

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, lingual part, embryo#4 weight 359 mg


text: LBMC UMR5239

text: public

characteristic: Submitter Id

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, buccal part, embryo#3, weight 359 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, lingual part, embryo#3, weight 359 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, buccal part, embryo#4, weight 359 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, lingual part, embryo#4, weight 359 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: the first molar tooth germ was dissected from the rest of the molar row, and separated into epithelial and mesenchymal parts with dispase treatment. Halves from Left and right germs were pooled.

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, epithelial part, embryo#1, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, epithelial part, embryo#2, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, mesenchymal part, embryo#1, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, mesenchymal part, embryo#2, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, epithelial part, embryo#1, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, epithelial part, embryo#2, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: mouse dissected embryonic subpart of tooth germ

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, mesenchymal part, embryo#1, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, mesenchymal part, embryo#2, weight 350 or 370 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, epithelial part, embryo#1, weight 788 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, epithelial part, embryo#2, weight 808 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, mesenchymal part, embryo#1, weight 788 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, mesenchymal part, embryo#2, weight 808 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, epithelial part, embryo#1, weight 788 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, epithelial part, embryo#2, weight 808 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, mesenchymal part, embryo#1, weight 788 mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: the first molar tooth germ was dissected from the rest of the molar row, and separated into epithelial and mesenchymal parts with dispase treatment. Halves from Left and right germs were pooled.

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: Upper first molar germ, mesenchymal part, embryo#2, weight 808 mg


text: LBMC UMR5239

text: public

text: golden hamster

text: hamster dissected embryonic subpart of tooth germ

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, epithelial part, 2 embryos same litter, weight 413 and 427 mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, mesenchymal part, 2 embryos same litter, weight 413 and 427 mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: Upper first molar germ, epithelial part, 2 embryos same litter, weight 413 and 427 mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: Upper first molar germ, mesenchymal part, 2 embryos same litter, weight 413 and 427 mg


text: LBMC UMR5239

text: public

text: house mouse

text: mouse dissected embryonic whole tooth germ

text: 14.5 dpc

text: the first molar tooth germ was dissected from the rest of the molar row. Left and right germs were pooled.

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 282-283mg


text: LBMC UMR5239

text: public

text: house mouse

text: 14.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 282-283mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 371mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 371mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 453-459mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 453-459mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 590mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 590mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 750-753mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 750-753mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 867mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 867mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 1028mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 1028mg


text: LBMC UMR5239

text: public

text: house mouse

text: 18.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 1232-1242mg


text: LBMC UMR5239

text: public

text: house mouse

text: mouse dissected embryonic whole tooth germ

text: 18.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 1232-1242mg


text: LBMC UMR5239

text: public

text: house mouse

text: 14.5 dpc

text: the first molar tooth germ was dissected from the rest of the molar row. Left and right germs were pooled.

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 282-286mg


text: LBMC UMR5239

text: public

text: house mouse

text: 14.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 282-286mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 352-357mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 352-357mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 493-495mg


text: LBMC UMR5239

text: public

text: house mouse

text: 15.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 493-495mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 592mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 592mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 716mg


text: LBMC UMR5239

text: public

text: house mouse

text: 16.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 716mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 924-928mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 924-928mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 1118mg


text: LBMC UMR5239

text: public

text: house mouse

text: 17.5 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 1188mg


text: LBMC UMR5239

text: public

text: house mouse

text: mouse dissected embryonic whole tooth germ

text: 18.0 dpc

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: lower first molar germ, whole tooth germ, single embryo, weight 1204-1209mg


text: LBMC UMR5239

text: public

text: house mouse

text: 18.0 dpc

text: the first molar tooth germ was dissected from the rest of the molar row. Left and right germs were pooled.

text: Mus musculus

text: Mus musculus

text: F

text: CD1, Charles River

text: upper first molar germ, whole tooth germ, single embryo, weight 1204-1209mg


text: LBMC UMR5239

text: public

text: golden hamster

text: hamster dissected embryonic whole tooth germ

text: 12.25 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 310-318mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.25 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 310-318mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 431-432mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 431-432mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 532mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 532mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.25 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 768mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.25 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 768mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 958mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 958mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.75 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 1050-1058mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.75 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 1050-1058mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 14.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 1195mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 14.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 1195mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 14.5 dpc

text: the first molar tooth germ was dissected from the rest of the molar row. Left and right germs were pooled.

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 1667mg


text: LBMC UMR5239

text: public

text: golden hamster

text: hamster dissected embryonic whole tooth germ

text: 14.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 1667mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 11.8 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 231-234mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 237mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 11.8 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 231-234mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 371mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 12.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 371mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 548mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.0 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

text: F

text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 548mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.25 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

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text: LBMC UMR5239

text: public

text: golden hamster

text: 13.25 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 793-795mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

text: lower first molar germ, whole tooth germ, single embryo, weight 1019mg


text: LBMC UMR5239

text: public

text: golden hamster

text: 13.5 dpc

text: Mesocricetus auratus

text: Mesocricetus auratus

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text: upper first molar germ, whole tooth germ, single embryo, weight 1019mg


text: LBMC UMR5239

text: public

text: golden hamster

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text: Mesocricetus auratus

text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

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text: LBMC UMR5239

text: public

text: golden hamster

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text: Mesocricetus auratus

text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 1035mg


text: LBMC UMR5239

text: public

text: golden hamster

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text: the first molar tooth germ was dissected from the rest of the molar row. Left and right germs were pooled.

text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

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text: Mesocricetus auratus

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text: RjHan:AURA, Janvier

text: upper first molar germ, whole tooth germ, single embryo, weight 1570mg


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text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6333b/2022

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Stadtspital Waid, Zürich, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6339e/2022


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Stadtspital Triemli, Zürich, Switzerland

characteristic: collection date

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6359f/2022

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Stadtspital Waid, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6365f/2022

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba635a0/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

text: UniversitätsSpital Zürich, Zürich, Switzerland

characteristic: collection date

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba63307/2022

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SIB

text: Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Sarah Nadeau, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Verena Kufner, Gabriela Ziltener, Maryam Zaheri, Stefan Schmutz, Annette Audigé, Maria Grünberg, Kevin Steiner, Jon Huder, Cyril Shah, Riccarda Capaul, Guido Bloemberg, Jürg Böni, Michael Huber, Alexandra Trkola, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba63440/2022

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Stadtspital Waid, Zürich, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6333c/2022


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Universität Zürich, Zürich, Switzerland

characteristic: collection date

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-465e18f1/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Stadtspital Waid, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6339d/2022

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba63650/2022

text: active surveillance in response to outbreak


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

text: Stadtspital Waid, Zürich, Switzerland

characteristic: collection date

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6350e/2022

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Bard College

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Bard College

text: Soil samples from transect

characteristic: description

text: farm soil

characteristic: environment (biome)

text: surface

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina NextEra

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Orebro University Hospital

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Orebro University Hospital

characteristic: Submitter Id

characteristic: collection date

text: Azerbaidjan, NA, NA

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: male

characteristic: host sex

text: urine

characteristic: isolation source host associated

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

characteristic: strain

characteristic: title


characteristic: External Id

text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: PacBio Sequel genome sequence of Aquimarina sp. strain EL43

characteristic: description

text: Marine

characteristic: environment (biome)

text: Atlantic Ocean

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: 215x coverage

characteristic: finishing strategy

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Algarve, Pedra da Greta

characteristic: geographic location (region and locality)

text: gorgonian coral

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Aquimarina sp. EL_43

text: PacBio Sequel genome sequencing of octocoral-derived Aquimarina sp. EL43

characteristic: project name

characteristic: reference for biomaterial

text: Aquimarina sp. EL_43

text: PacBio Sequel (Pacific Biosciences)

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: PacBio Sequel genome sequence of Aquimarina sp. strain Aq349

characteristic: description

text: Marine

text: Atlantic Ocean

text: seawater

text: 194x coverage

text: Portugal

text: Algarve, Gale Alta

text: marine sponge

text: host-associated

text: Aquimarina sp. Aq349

characteristic: organism

text: PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq349

text: Aquimarina sp. Aq349

text: PacBio Sequel (Pacific Biosciences)

characteristic: title


text: iBB-IST

text: public

text: PacBio Sequel genome sequence of Aquimarina sp. strain Aq107

text: Marine

characteristic: environment (biome)

text: Atlantic Ocean

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: 210x coverage

characteristic: finishing strategy

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Algarve, Gale Alta

characteristic: geographic location (region and locality)

text: marine sponge

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Aquimarina sp. Aq107

text: PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq107

characteristic: project name

text: Aquimarina sp. Aq107

text: PacBio Sequel (Pacific Biosciences)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: PacBio Sequel genome sequence of Aquimarina sp. strain Aq78

characteristic: description

text: Marine

text: Atlantic Ocean

text: seawater

text: 262x coverage

text: Portugal

text: Algarve, Gale Alta

text: marine sponge

text: host-associated

text: Aquimarina sp. Aq78

text: PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq78

characteristic: reference for biomaterial

text: Aquimarina sp. Aq78

text: PacBio Sequel (Pacific Biosciences)

characteristic: sequencing method


text: public

tag: Namespace:EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD

text: public

text: 3 to 6

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: intestinal epithelial cell

text: house mouse

text: Protocols: Organoids were collected by removing culture media from the tissue culture well. Matrigel constructs holding the organoids were theen dissolved in ice-cold PBS, and the organoids were centrifuged at 1200 rpm for 5 minutes at 4 ºC to form a cell pellet which was used for downstream RNA extraction. The organoids were maintained in Advanced Dulbecco’s Modified Eagle Medium/F12 (Thermo Fisher) supplemented with penicillin/streptomycin, 10 mmol/L HEPES, Glutamax, 1x N2 supplement (Thermo Fisher), 1× B27 supplement (Thermo Fisher), 1.25 mmol/L N-acetyl-l-cysteine (Sigma-Aldrich). Wild-type organoids were further supplemented with 50 ng/mL recombinant murine epidermal growth factor (Thermo Fisher), 500 ng/mL RSPO1 (R&D systems), and 100 ng/mL noggin (PeproTech). AKPT and KPN organoids were further supplemented with 50 ng/mL recombinant murine epidermal growth factor (Thermo Fisher) and 100 ng/mL noggin (PeproTech). Organoids were plated on DAY 0 and the media was supplemented with 1 ng/mL of recombinant mouse interferon-gamma protein (PeproTech) on DAY 3. Samples were collected 24 h later. RNA was extracted using the RNeasy Micro Kit from Qiagen (74004) and DNase treatment was performed using the DNA-free kit from Life Technologies (AM1906). 3'RNAseq libraries were prepared using the QuantSeq 3' mRNA-Seq Library Prep Kit FWD (Lexogen, Austria). RNA input varying from 100-1000ng and 14-20 PCR cycles were used. Library quality and quantity were assessed using the HS 1000 DNA TapeStation (Agilent) and DNA High Sensitivity Qubit Assay (ThermoFisher) respectively.

text: villinCreER;Apcfl/fl;KrasG12D/+;Trp53fl/flTgfbrIfl/fl

characteristic: genotype

text: organoid culture

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: Mus musculus


text: OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3 to 6

text: ArrayExpress

text: intestinal epithelial cell

text: house mouse

characteristic: description

text: villinCreER;KrasG12D/+;Trp53fl/flRosa26N1icd/+

text: organoid culture

text: not applicable

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus


characteristic: ENA-CHECKLIST

text: OXFORD

text: public

text: 3 to 6

text: ArrayExpress

text: intestinal epithelial cell

text: house mouse

characteristic: common name

text: wild type genotype

text: organoid culture

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

characteristic: strain

characteristic: title


E-MTAB-11767:Day 10_1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UoH

text: public

text: E-MTAB-11767:Day 10_1

text: ArrayExpress

characteristic: broker name

text: neuroepithelium

text: human

text: Protocols: Cells from culture collected using a cell scrapper and pelleted GnRH differentiation protocol published in 2016. The first twenty days of the protocol During the stem cell differentiation, first ten days consisted of dual-SMAD inhibition (Dorsomporphin and SB431542), followed by another ten days of FGF8 treatment. Using Nucleospin RNA kit from Machery-Nagel. DNase treatment performed seperately using DNase from Promega NEBNext Ultra Directional polyA capture method as paired-end sequencing for read length 150 bp

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: Day 10_1


E-MTAB-11767:Day 10_2

text: UoH

characteristic: INSDC center name

text: public

text: E-MTAB-11767:Day 10_2

text: ArrayExpress

text: neuroepithelium

text: human

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 10_2


E-MTAB-11767:Day 10_3

text: UoH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11767:Day 10_3

text: ArrayExpress

text: neuroepithelium

text: human

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 10_3


E-MTAB-11767:Day 10_4

text: UoH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11767:Day 10_4

text: ArrayExpress

text: neuroepithelium

text: human

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 10_4


E-MTAB-11767:Day 13_1

text: UoH

text: public

text: E-MTAB-11767:Day 13_1

characteristic: Submitter Id

text: ArrayExpress

text: neural progenitor

text: human

characteristic: description

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 13_1


E-MTAB-11767:Day 13_2

characteristic: ENA-CHECKLIST

text: UoH

text: public

text: E-MTAB-11767:Day 13_2

text: ArrayExpress

text: neural progenitor

text: human

characteristic: common name

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 13_2


E-MTAB-11767:Day 13_3

text: UoH

text: public

text: E-MTAB-11767:Day 13_3

text: ArrayExpress

text: neural progenitor

text: human

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 13_3


E-MTAB-11767:Day 13_4

text: UoH

text: public

text: E-MTAB-11767:Day 13_4

text: ArrayExpress

text: neural progenitor

text: human

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 13_4

characteristic: title


E-MTAB-11767:Day 15_1

characteristic: ENA-FIRST-PUBLIC

text: UoH

text: public

text: E-MTAB-11767:Day 15_1

text: ArrayExpress

text: neural progenitor

text: human

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 15_1


E-MTAB-11767:Day 15_2

characteristic: ENA-LAST-UPDATE

text: UoH

text: public

text: E-MTAB-11767:Day 15_2

text: ArrayExpress

text: neural progenitor

text: human

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

text: Day 15_2