E-MTAB-11912:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11912:Sample 1

tag: Namespace:Department of Cell and Developmental Biology

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: To dissociate organoids to single cells, matched healthy organoids for the same human sample in different media conditions were manually collected under a stereoscope. Following collection, dissociation enzymes and reagents from the Neural Tissue Dissociation Kit (Miltenyi, 130-092- 628) were used, and all incubation steps were carried out in a refrigerated centrifuge pre-chilled to 10°C unless otherwise stated. All tubes and pipette tips used to handle cell suspensions were pre-washed with 1% BSA in 1X HBSS to prevent adhesion of cells to the plastic. Tissue was treated for 15 minutes at 10°C with Mix 1 and then incubated for 10-minute increments at 10°C with Mix 2, and interrupted by agitation through pipetting with a P1000 pipette until fully dissociated. Cells were filtered through a 70 µm filter coated with 1% BSA in 1X HBSS, spun down at 500g for 5 minutes at 10°C and resuspended in 500mL 1X HBSS (with Mg2+, Ca2+). Cells were spun down (500g for 5 minutes at 10°C) and washed twice by suspension in 2 mL of HBSS + 1% BSA, followed by centrifugation. Cells were counted using a hemocytometer, then spun down and resuspended to reach a concentration of 1,000 cells/µL and kept on ice. Single cell libraries were immediately prepared on the 10x Chromium by the University of Michigan Advanced Genomics Core facility with a target capture of 5,000 cells. A full, detailed protocol of tissue dissociation for single cell RNA sequencing can be found at http://www.jasonspencelab.com/protocols. Duodenal tissue was cut into smaller pieces (~0.5-1 cm) and cut open longitudinally to expose the villi. To separate the epithelium, specimens then were incubated in disease(StemCell Technologies, Cat#07923) for 30 minutes on ice in a Petri dish. Dispase then was removed and replaced with 100% fetal bovine serum (FBS) for 15 minutes on ice. To mechanically separate the tissue layers, 3 mLs of Advanced DMEM/F12 (Gibco, Cat#12634-028) equal to the initial volume of FBS was added to the biopsy tissue before vigorously pipetting the mixture several times. Epithelial fragments then settled to the bottom of the Petri dish where they were collected manually on a stereoscope by pipette. The epithelium was then washed with ice-cold Advanced DMEM/F12 and allowed to settle to the bottom of a 1.5 mL tube. The supernatant was withdrawn from the loose tissue pellet and replaced with Matrigel (Corning, Cat# 354234). The Matrigel containing the isolated epithelium then was gently mixed before being pipetted into individual 50 µL droplets in a 24-well plate. The plate containing the droplets then was incubated at 37°C for at least 10 minutes to allow the Matrigel to solidify before adding media. Culture media consisted of LWRN conditioned media generated as previously described45,46 and combined with human basal media (Advanced DMEM/F12 (Gibco, Cat#12634-028); Glutamax 4mM (Gibco, Cat#35050-061); HEPES 20 mM (Gibco, Cat#15630-080); N2 Supplement (2X)(Gibco, Cat#17502-048), B27 Supplement (2X) (Fisher, Cat#17504-044), PenicillinStreptomycin (2X) (Gibco, Cat#15140-122), N-acetylcysteine (2 mM) (Sigma, Cat#A9165-25G), Nicotinamide (20 mM) (Sigma, Cat#N0636-061)). Complete media was comprised of 25% LWRN and 75% human basal media to which rhEGF (R&D, Cat#236-EG, 100 ng/mL) or rhEREG (R&D, Cat#5898-NR-050, 1 ng/mL) was added. Immediately after tissue dissociation, single cell libraries were prepared on the 10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2, 16 rxns PN-120237 was used. Immediately after tissue dissociation, single cell libraries were prepared on the 10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2, 16 rxns PN-120237 was used

characteristic: description

text: late embryonic stage

characteristic: developmental stage

text: normal

characteristic: disease

text: intestinal organoid culture

characteristic: growth condition

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: duodenum

characteristic: organism part

text: intestinal epithelial cell

characteristic: progenitor cell type

text: Homo sapiens

text: Sample 1


E-MTAB-11912:Sample 2

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Cell and Developmental Biology

text: public

text: E-MTAB-11912:Sample 2

text: ArrayExpress

text: human

text: late embryonic stage

text: normal

text: intestinal organoid culture

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: duodenum

text: intestinal epithelial cell

text: Homo sapiens

text: Sample 2

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cells from Genital Discs

characteristic: cell type

text: fruit fly

text: Cut&Tag in Genital Discs for H3K27me3 - wild-type

text: wandering L3 larvae

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: both

characteristic: sex

text: white

characteristic: strain

text: Genital Discs

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: Cells from Genital Discs

text: fruit fly

characteristic: common name

text: Cut&Tag in Genital Discs for H3K27me3 - Deletion Fab7

characteristic: description

text: wandering L3 larvae

text: Drosophila melanogaster

text: Drosophila melanogaster

text: both

text: fab7(1) mutant

text: Genital Discs


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Noord-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Utrecht

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status


characteristic: External Id

text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

characteristic: collected by

characteristic: collection date

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: External Id

text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

characteristic: collected by

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

characteristic: collection date

characteristic: description

text: South Africa, KwaZulu-Natal

characteristic: geographic location

text: Human, Stool

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: sub species Diarizonae


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Brandenburg


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collecting institution

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38468072/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: SIB

text: Laboratorio di Diagnostica Molecolare, Servizio di Genetica Medica EOLAB, Ente Ospedaliero Cantonale; Via Mirasole 22/A, 6500 Bellinzona

characteristic: collection date

text: Spina Valeria Romina, Gloria Gaudio, Gladys Martinetti Lucchini, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: public

characteristic: SRA accession

tag: Namespace:Institute of Medical Virology, Zürich, Switzerland

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Stadtspital Triemli, Zürich, Switzerland

characteristic: collecting institution

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Riccarda Capaul, Guido Bloemberg, Michael Huber, Alexandra Trkola, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba64bfb/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba64a56/2022

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38383935/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

text: public

tag: Namespace:ETH ZURICH D-BSSE

text: SIB

characteristic: broker name

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

characteristic: collecting institution

text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Maurice Redondo, Olivier Kobel, Christoph Noppen, Sebastian Kurscheid, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-37776735/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38384209/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-37791015/2022

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-37813350/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC center name

text: public

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38360268/2022

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Laboratorio di Diagnostica Molecolare, Servizio di Genetica Medica EOLAB, Ente Ospedaliero Cantonale; Via Mirasole 22/A, 6500 Bellinzona

characteristic: collection date

text: Spina Valeria Romina, Gloria Gaudio, Gladys Martinetti Lucchini, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38430846/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38411340/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38388540/2022

characteristic: organism

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38415100/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38415025/2022

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Stadtspital Triemli, Zürich, Switzerland

characteristic: collection date

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Riccarda Capaul, Guido Bloemberg, Michael Huber, Alexandra Trkola, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba648c1/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38454107/2022

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: GE

text: Human

text: restricted access

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