characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor2_24hpi_37C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: ICV


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor2_24hpi_37C_IDV

tag: Namespace:University of Bern Institute for Infectious Diseases

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

text: Protocols: We performed a temporal transcriptome analysis on human, porcine, and bovine airway epithelial cell (AEC) cultures infected with ICV and IDV, as well as uninfected hAEC cultures, incubated either at 33°C or 37°C. AEC cultures from the different species were harvested at 24, 48 72, 96 hpi and processed for Bulk RNA Barcoding and sequencing (BRB-seq). Virus-infected and control hAEC cultures were lyzed with 350 uL of MR1 lysis buffer from NucleoMag RNA kit(Macherey-Nagel) according manufacturers guidelines, samples were stored at -80°C for later analysis. Cell lysates were collected at 24, 48, 72, and 96 hpi from cultures  incubated at 33°C and 37°C. Isolation and culturing of primary material was performed as previously described (Gultom, M., Laloli, L. & Dijkman, R. Well-Differentiated Primary Mammalian Airway Epithelial Cell Cultures. in Methods in Molecular Biology 2203, 119–134). Until the experimental procedures, all AEC cultures were maintained at 37°C in a humidified incubator with 5% CO2. Total cellular RNA from mock and virus-infected hAEC cultures was extracted with the NucleoMag RNA kit (Macherey-Nagel) according manufacturers guidelines on a Kingfisher Flex Purification system (Thermofisher). Total RNA concentration was quantified with QuantiFluor® RNA System (Promega) according manufactures guidelines on a Cytation 5 multimode reader (Biotek). BRB-seq protocol (Alpern, D., Gardeux, V., Russeil, J. et al. BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing. Genome Biol 20, 71 (2019). https://doi.org/10.1186/s13059-019-1671-x)

characteristic: description

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: IDV

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Bern Institute for Infectious Diseases

text: public

text: E-MTAB-11939:Porcine_Donor2_24hpi_37C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11939:Porcine_Donor2_48hpi_33C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


text: public

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor2_48hpi_33C_IDV

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor2_48hpi_33C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: Mock

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor2_48hpi_37C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor2_48hpi_37C_IDV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor2_48hpi_37C_Mock

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor2_72hpi_33C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: ICV

characteristic: strain

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor2_72hpi_33C_IDV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor2_72hpi_33C_Mock

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor2_72hpi_37C_ICV

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor2_72hpi_37C_IDV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: IDV

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor2_72hpi_37C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor2_96hpi_33C_ICV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor2_96hpi_33C_IDV

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor2_96hpi_33C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: Protocols: We performed a temporal transcriptome analysis on human, porcine, and bovine airway epithelial cell (AEC) cultures infected with ICV and IDV, as well as uninfected hAEC cultures, incubated either at 33°C or 37°C. AEC cultures from the different species were harvested at 24, 48 72, 96 hpi and processed for Bulk RNA Barcoding and sequencing (BRB-seq). Virus-infected and control hAEC cultures were lyzed with 350 uL of MR1 lysis buffer from NucleoMag RNA kit(Macherey-Nagel) according manufacturers guidelines, samples were stored at -80°C for later analysis. Cell lysates were collected at 24, 48, 72, and 96 hpi from cultures  incubated at 33°C and 37°C. Isolation and culturing of primary material was performed as previously described (Gultom, M., Laloli, L. & Dijkman, R. Well-Differentiated Primary Mammalian Airway Epithelial Cell Cultures. in Methods in Molecular Biology 2203, 119–134). Until the experimental procedures, all AEC cultures were maintained at 37°C in a humidified incubator with 5% CO2. Total cellular RNA from mock and virus-infected hAEC cultures was extracted with the NucleoMag RNA kit (Macherey-Nagel) according manufacturers guidelines on a Kingfisher Flex Purification system (Thermofisher). Total RNA concentration was quantified with QuantiFluor® RNA System (Promega) according manufactures guidelines on a Cytation 5 multimode reader (Biotek). BRB-seq protocol (Alpern, D., Gardeux, V., Russeil, J. et al. BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing. Genome Biol 20, 71 (2019). https://doi.org/10.1186/s13059-019-1671-x)

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: Mock

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Bern Institute for Infectious Diseases

text: public

text: E-MTAB-11939:Porcine_Donor2_96hpi_37C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor2_96hpi_37C_IDV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor2_96hpi_37C_Mock

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor3_24hpi_33C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: ICV

characteristic: strain

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor3_24hpi_33C_IDV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor3_24hpi_33C_Mock

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor3_24hpi_37C_ICV

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor3_24hpi_37C_IDV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: IDV

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor3_24hpi_37C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor3_48hpi_33C_ICV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor3_48hpi_33C_IDV

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor3_48hpi_33C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: Mock

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor3_48hpi_37C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor3_48hpi_37C_IDV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor3_48hpi_37C_Mock

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor3_72hpi_33C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: Protocols: We performed a temporal transcriptome analysis on human, porcine, and bovine airway epithelial cell (AEC) cultures infected with ICV and IDV, as well as uninfected hAEC cultures, incubated either at 33°C or 37°C. AEC cultures from the different species were harvested at 24, 48 72, 96 hpi and processed for Bulk RNA Barcoding and sequencing (BRB-seq). Virus-infected and control hAEC cultures were lyzed with 350 uL of MR1 lysis buffer from NucleoMag RNA kit(Macherey-Nagel) according manufacturers guidelines, samples were stored at -80°C for later analysis. Cell lysates were collected at 24, 48, 72, and 96 hpi from cultures  incubated at 33°C and 37°C. Isolation and culturing of primary material was performed as previously described (Gultom, M., Laloli, L. & Dijkman, R. Well-Differentiated Primary Mammalian Airway Epithelial Cell Cultures. in Methods in Molecular Biology 2203, 119–134). Until the experimental procedures, all AEC cultures were maintained at 37°C in a humidified incubator with 5% CO2. Total cellular RNA from mock and virus-infected hAEC cultures was extracted with the NucleoMag RNA kit (Macherey-Nagel) according manufacturers guidelines on a Kingfisher Flex Purification system (Thermofisher). Total RNA concentration was quantified with QuantiFluor® RNA System (Promega) according manufactures guidelines on a Cytation 5 multimode reader (Biotek). BRB-seq protocol (Alpern, D., Gardeux, V., Russeil, J. et al. BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing. Genome Biol 20, 71 (2019). https://doi.org/10.1186/s13059-019-1671-x)

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: ICV

characteristic: strain

characteristic: title


text: University of Bern Institute for Infectious Diseases

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor3_72hpi_33C_IDV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor3_72hpi_33C_Mock

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor3_72hpi_37C_ICV

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor3_72hpi_37C_IDV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: IDV

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor3_72hpi_37C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor3_96hpi_33C_ICV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11939:Porcine_Donor3_96hpi_33C_IDV

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor3_96hpi_33C_Mock

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: respiratory system

characteristic: replicate

text: Sus scrofa

text: Mock

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11939:Porcine_Donor3_96hpi_37C_ICV

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

characteristic: common name

characteristic: growth condition

text: not applicable

characteristic: isolate

text: Sus scrofa

text: Sus scrofa

text: respiratory system

characteristic: organism part

text: Sus scrofa

text: ICV


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11939:Porcine_Donor3_96hpi_37C_IDV

characteristic: Submitter Id

text: ArrayExpress

text: primary cell line

text: respiratory epithelial cell

text: pig

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: IDV


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11939:Porcine_Donor3_96hpi_37C_Mock

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: respiratory epithelial cell

characteristic: cell type

text: pig

characteristic: description

text: not applicable

text: Sus scrofa

text: Sus scrofa

text: respiratory system

text: Sus scrofa

text: Mock


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate


text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: not provided

text: Samples prepared at Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh by McHugh M, Dewar R, Rooke S, O'Toole Á, Scher E, Hill V, McCrone JT, Colquhoun R, Yu X, Jackson B, Rambaut A, Templeton K and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh

characteristic: collecting institution

characteristic: collection date

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

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text: public

characteristic: INSDC status

tag: Namespace:University Hospital Basel

text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

text: Christian Beisel, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler, Tim Roloff, Fanny Wegner, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

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text: restricted access

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: University Hospital Basel

text: public

characteristic: SRA accession

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text: Felix-Platter Spital, Basel, Switzerland

characteristic: collecting institution

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text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

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characteristic: GISAID Accession ID

text: University Hospital Basel

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text: public

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text: SIB

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text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

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characteristic: ENA-CHECKLIST

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characteristic: GISAID Accession ID

text: University Hospital Basel

characteristic: INSDC center name

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text: public

text: SIB

characteristic: broker name

text: Spital Dornach, Dornach, Switzerland

characteristic: collecting institution

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text: Switzerland

text: BL

text: Human

text: restricted access

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text: restricted access

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characteristic: host subject id

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

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characteristic: host common name

text: restricted access

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text: restricted access

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text: Spital Langenthal, SRO AG, Labor

text: Alexander Imhof, Cedric Howald, Lorenzo Cerutti, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: BE

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text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

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text: hCoV-19/Switzerland/BE-SRO-500011_7373/2022

characteristic: isolate


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text: Spital Langenthal, SRO AG, Labor

characteristic: collector name

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text: restricted access

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text: hCoV-19/Switzerland/BE-SRO-500011_6458/2022

characteristic: title


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text: SRO

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characteristic: isolate


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text: Spital Langenthal, SRO AG, Labor

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text: Switzerland

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text: restricted access

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text: restricted access

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characteristic: organism

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: SRO

text: public

characteristic: INSDC status

text: SIB

text: Spital Langenthal, SRO AG, Labor

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

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characteristic: host common name

text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-SRO-500011_3616/2022

text: Severe acute respiratory syndrome coronavirus 2

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characteristic: isolate

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text: hCoV-19/Switzerland/BE-SRO-500011_2804/2022

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text: hCoV-19/Switzerland/LU-SRO-500011_7026/2022

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characteristic: organism

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text: SIB

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collector name

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characteristic: organism

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text: University Hospital Basel

text: public

characteristic: INSDC status

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text: Lantcron Irwing, Basel, Switzerland

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

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text: hCoV-19/Switzerland/BE-SRO-500011_3682/2022

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text: Spital Langenthal, SRO AG, Labor

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text: hCoV-19/Switzerland/BE-SRO-500011_6743/2022

text: Severe acute respiratory syndrome coronavirus 2

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text: Spital Langenthal, SRO AG, Labor

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text: not provided

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2021-12-20

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-21882/2020

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-86994/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-01-10

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2022-01-17

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-03-14

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Department of Clinical Microbiology, Odense University Hospital, Odense, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2020-11-30

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Molekylær Medicinsk Afdeling, Aarhus University Hospital, Aarhus, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-11-08

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-185214/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-15890/2020

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-10-25

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=3,last_infection_date=2021-11-15

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-02-21

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-27

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: isolate


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-12-28

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: organism

characteristic: sample capture status