characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267052 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Apibacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Apibacter sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267052_bin.10_metawrap_v1.3.0_MAG


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Gilliamella sp.

characteristic: organism

text: metagenomic sequencing of Apis cerana and Apis mellifera colonies in China

text: uncultured Gilliamella sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267052_bin.11_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Bartonella apis

characteristic: project name

characteristic: sample derived from

text: Bartonella apis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267052_bin.6_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Leclercia sp.

characteristic: organism

text: uncultured Leclercia sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267052_bin.9_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267053 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Frischella perrara

characteristic: project name

characteristic: sample derived from

text: Frischella perrara

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267053_bin.4_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267054 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Lactobacillus sp.

characteristic: organism

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267054_bin.12_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Enterobacteriaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Enterobacteriaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267054_bin.5_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267055 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Gilliamella apicola

characteristic: organism

text: Gilliamella apicola

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267055_bin.2_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267056 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Lactobacillus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267056_bin.6_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Gilliamella sp.

characteristic: organism

text: uncultured Gilliamella sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267056_bin.8_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267059 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Lactobacillus apis

characteristic: project name

characteristic: sample derived from

text: Lactobacillus apis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267059_bin.1_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Neisseriaceae bacterium

characteristic: organism

text: uncultured Neisseriaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267059_bin.12_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Lactobacillaceae bacterium

text: metagenomic sequencing of Apis cerana and Apis mellifera colonies in China

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267059_bin.8_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267060 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Lactobacillus sp.

characteristic: organism

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267060_bin.2_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Dysgonomonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Dysgonomonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267060_bin.4_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267061 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Synechococcus sp.

characteristic: organism

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267061_bin.11_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Escherichia coli

characteristic: project name

characteristic: sample derived from

text: Escherichia coli

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267061_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267062 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Bifidobacterium coryneforme

characteristic: organism

text: Bifidobacterium coryneforme

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267062_bin.3_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Melissococcus plutonius

characteristic: project name

characteristic: sample derived from

text: Melissococcus plutonius

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267062_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267063 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Ventosimonas sp.

characteristic: organism

text: uncultured Ventosimonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267063_bin.6_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Lactobacillus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267063_bin.8_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267064 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Snodgrassella alvi

characteristic: organism

text: Snodgrassella alvi

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267064_bin.2_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Bifidobacterium sp.

text: metagenomic sequencing of Apis cerana and Apis mellifera colonies in China

characteristic: project name

characteristic: sample derived from

text: uncultured Bifidobacterium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267064_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Enterobacter cloacae

characteristic: organism

text: Enterobacter cloacae

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267064_bin.8_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267065 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Providencia alcalifaciens

characteristic: project name

characteristic: sample derived from

text: Providencia alcalifaciens

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267065_bin.12_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Lactobacillus sp.

characteristic: organism

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267065_bin.7_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267066 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Bifidobacterium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Bifidobacterium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267066_bin.4_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Gilliamella sp.

characteristic: organism

text: uncultured Gilliamella sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267066_bin.6_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Weissella confusa

characteristic: project name

characteristic: sample derived from

text: Weissella confusa

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267066_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267070 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Erwinia sp.

characteristic: organism

text: uncultured Erwinia sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267070_bin.16_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Enterobacterales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Enterobacterales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267070_bin.21_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267073 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Lactobacillus sp.

characteristic: organism

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267073_bin.2_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Gilliamella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Gilliamella sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267073_bin.4_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267074 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Bifidobacterium sp.

characteristic: organism

text: metagenomic sequencing of Apis cerana and Apis mellifera colonies in China

text: uncultured Bifidobacterium sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267074_bin.3_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Bartonella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Bartonella sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267074_bin.9_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267075 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Gilliamella sp.

characteristic: organism

text: uncultured Gilliamella sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267075_bin.4_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Bartonella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Bartonella sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267075_bin.6_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Lactobacillus panisapium

characteristic: organism

text: Lactobacillus panisapium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267075_bin.7_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Enterobacter huaxiensis

characteristic: project name

characteristic: sample derived from

text: Enterobacter huaxiensis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267075_bin.8_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267076 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Frischella perrara

characteristic: organism

text: Frischella perrara

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267076_bin.10_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267077 of study SRP252002.

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Lactobacillaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267077_bin.11_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Bifidobacterium sp.

characteristic: organism

text: uncultured Bifidobacterium sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267077_bin.13_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Gilliamella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Gilliamella sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267077_bin.14_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Snodgrassella alvi

characteristic: organism

text: Snodgrassella alvi

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267077_bin.16_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: Apibacter mensalis

text: metagenomic sequencing of Apis cerana and Apis mellifera colonies in China

characteristic: project name

characteristic: sample derived from

text: Apibacter mensalis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267077_bin.2_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267078 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: uncultured Dysgonomonas sp.

characteristic: organism

text: uncultured Dysgonomonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267078_bin.5_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Bartonella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Bartonella sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267078_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267079 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Gilliamella apicola

characteristic: organism

text: Gilliamella apicola

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267079_bin.6_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: honeybee

characteristic: environment (biome)

text: digestive system

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: honeybee metagenome

characteristic: isolation source

text: honeybee metagenome

characteristic: metagenomic source

text: uncultured Lactobacillus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillus sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR11267079_bin.8_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: common name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11267080 of study SRP252002.

text: honeybee

text: digestive system

text: gut content

text: China

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: honeybee metagenome

text: honeybee metagenome

text: Gilliamella apicola

characteristic: organism

text: Gilliamella apicola

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR11267080_bin.10_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Shanghai Tenth People's Hospital, Tongji University, China

text: ArrayExpress

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\"adenylate, then the adaptors were ligated to the end of these 3\"adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: euploid

characteristic: genotype

text: resistant strain FY1284

characteristic: individual

text: not applicable

text: Candida albicans

text: Candida albicans

text: whole organism

characteristic: organism part

text: large colony

characteristic: phenotype

text: Candida albicans

text: fluconazole; 0.5 microgram per milliliter for 24 hours

characteristic: stimulus

characteristic: strain


characteristic: ENA-CHECKLIST

text: Shanghai Tenth People's Hospital, Tongji University, China

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: aneuploid

text: resistant strain FY1284

text: not applicable

characteristic: isolate

text: Candida albicans

text: Candida albicans

text: whole organism

text: small colony

text: Candida albicans


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: resistant strain FY1285

text: not applicable

text: Candida albicans

characteristic: organism

text: Candida albicans

text: whole organism

text: large colony

text: Candida albicans

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: description

text: aneuploid

characteristic: genotype

text: resistant strain FY1285

characteristic: individual

text: not applicable

text: Candida albicans

text: Candida albicans

text: whole organism

text: small colony

text: Candida albicans


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Shanghai Tenth people's hosipital, Shanghai, China

text: ArrayExpress

text: Protocols: Cells were grown in YPD broth at 37˚C from OD600=0.01 till OD600=1.0. Cells were treated with 1 µg/ml or 4 µg/ml of tunicamycin, or DMSO (control) for 1h. Pellets of 5ml cell culture were obtained by centrifuging at maximum speed for 1min. the pellets were fast frozen in liquid nitrogen. RNA was extracted using the TRIzol method following the manufacturer's protocol. Cell pellets were transferred from liquid nitrogen into the 2ml tub containing 1.5ml Trizol reagent. The mix was shared for 3min, and kept for 5in at room temperature, then centrifuged at 10,000xg for 5min at 4˚C. The supernatant was added 200µl of chloroform/isoamyl alcohol (24:1) with 1ml lysis reagents. After centrifuged at 10,000g for 10min at 4˚C, the supernatant was transferred into another new tube with equal volume of isopropanol and put in the refrigerator at -20˚C for 1h. After centrifuged at 13600xg for 20min at 4˚C, the supernatant was precipitated by 1ml of 75% ethanol and let dry for 3-5min. The RNA pellet was dissolved with 30-100µl of DEPC water. The concentration of the extracted RNA was determined using a Nanodrop system (NanoDrop, Madison, USA), and the integrity of the RNA was examined by the RNA integrity number (RIN) using an Agilent 2100 bioanalyzer (Agilent, Santa Clara, USA) buffer at appropriate temperature. Then First-strand cDNA was generated using random hexamer-primed reverse transcription, followed by a second-strand cDNA synthesis. afterwards, A-Tailing Mix and RNA Index Adapters were added by incubating to end repair. The cDNA fragments obtained from previous step were amplified by PCR, and products were purified by Ampure XP Beads, then dissolved in EB solution. The product was validated on the Agilent Technologies 2100 bioanalyzer for quality control. The double stranded PCR products from previous step were heated denatured and circularized by the splint oligo sequence to get the final library. The single strand circle DNA (ssCir DNA) was formatted as the final library.

text: not applicable

text: Candida albicans

text: Candida albicans

text: whole organism

characteristic: organism part

text: Candida albicans

characteristic: strain

unit: degree celsius

characteristic: temperature


text: Shanghai Tenth people's hosipital, Shanghai, China

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: not applicable

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans


characteristic: ENA-FIRST-PUBLIC

text: CNRS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: air

characteristic: air environmental package

characteristic: collection date

text: temperate forest

characteristic: environment (biome)

text: mountain

characteristic: environment (feature)

text: air

characteristic: environment (material)

unit: m

characteristic: geographic location (altitude)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: air

text: temperate forest

text: mountain

text: water

text: France

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CNRS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: air

characteristic: air environmental package

characteristic: collection date

text: mock sample

characteristic: environment (biome)

text: mock sample

characteristic: environment (feature)

text: mock sample

text: France

text: metagenome

text: metagenome

text: metagenome

text: Illumina MiSeq


text: CNRS

text: public

text: air

text: blank

text: blank

text: blank

characteristic: environment (material)

characteristic: geographic location (altitude)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method


E-MTAB-11926:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: the Fourth Military Medical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11926:Sample 1

tag: Namespace:the Fourth Military Medical University

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: To generate murine bone marrow-derived macrophages (mBMDMs), the femur and tibia were removed from sacriﬁced adult mice. The bones were ﬁrst rinsed with sterile phosphate-buffered saline (PBS) containing 0.1% (v/v) penicillin–streptomycin (P/S) solution. Subsequently, the bone marrow was ﬂushed with Roswell Park Memorial Institute 1640 (RPMI 1640, HyClone) containing 10% FBS and 0.1% P/S and filtered with a cell strainer (70 mm). Cells were resuspended in RPMI 1640 after centrifugation and then primed with M-CSF (20 ng/ml, PeproTech) with medium exchange every other day for four days to generate mBMDMs. The WT and RBP-JCKO mBMDMs were infected with Hantaan virus (HTNV) at an MOI of 1 for 36 hours. Total RNA was extracted from WT and RBP-JCKO mBMDMs at 36 hpi, using TRIzol (Invitrogen). To remove trailing sequences below a Phred quality score of 20 and achieve uniform sequence lengths for downstream clustering processes, raw fastq sequences were treated with Trimmomatic tools (v 0.36) using the following options: TRAIL-ING: 20, MINLEN: 235 and CROP: 235. Sequencing read quality was inspected using FastQC software. Adapter removal and read trimming were performed using Trimmomatic. Sequencing reads were trimmed from the end (base quality less than Q20) and filtered by length (less than 25).Paired-end reads were aligned to the mouse reference genome mm10 with HISAT2. HTSeq v0. 6.0 was used to count the read numbers mapped to each gene. The whole sample expression levels were presented as the expected number of reads per kilobase of transcript sequence per million base pairs sequenced (RPKM), which is the recommended and most common method to estimate the level of gene expression.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Hantaan orthohantavirus

characteristic: infect

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: Sample 1

characteristic: title


E-MTAB-11926:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: the Fourth Military Medical University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11926:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: macrophage

text: house mouse

text: adult

text: wild type genotype

text: Hantaan orthohantavirus

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 2


E-MTAB-11926:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: the Fourth Military Medical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11926:Sample 3

text: ArrayExpress

text: macrophage

text: house mouse

text: adult

text: wild type genotype

text: Hantaan orthohantavirus

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 3


E-MTAB-11926:Sample 4

text: the Fourth Military Medical University

text: public

text: E-MTAB-11926:Sample 4

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: RBP-J knockout

text: Hantaan orthohantavirus

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 4


E-MTAB-11926:Sample 5

text: the Fourth Military Medical University

text: public

text: E-MTAB-11926:Sample 5

text: ArrayExpress

text: macrophage

text: house mouse

text: adult

text: RBP-J knockout

characteristic: genotype

text: Hantaan orthohantavirus

characteristic: infect

text: not applicable

characteristic: isolate

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: Sample 5


E-MTAB-11926:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: the Fourth Military Medical University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11926:Sample 6

text: ArrayExpress

text: macrophage

text: house mouse

text: adult

text: RBP-J knockout

text: Hantaan orthohantavirus

text: not applicable

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: Sample 6

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


E-MTAB-11928:RNAseq-Col-0 biol rep 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11928:RNAseq-Col-0 biol rep 1

tag: Namespace:Botanical Institute of the Christian-Albrechts-University of Kiel Genetics and molecularbiology in plants

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Protocols: Flowers were harvested simultaneously for all genotypes, snap-frozen in liquid nitrogen and stored at -80°C until use. The plants were grown in the Greenhouse under long day conditions. Total RNA extraction in Trizol from flowers. Total RNA were treated with Dnase and depleted of rRNAs using the RiboMinusTM Plant Kit for RNA-Seq (invitrogen), following the manufacturer’s instructions. The sequencing libraries of total RNA of two biological repeats per genotype were prepared using the NEXTflex Rapid Directional RNA-Seq Kit (Bioo Scientific) following the manufacturer's instructions.

characteristic: description

text: flowering stage

characteristic: developmental stage

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: not applicable

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower

characteristic: organism part

text: Arabidopsis thaliana

text: RNAseq-Col-0 biol rep 1


E-MTAB-11928:RNAseq-Col-0 biol rep 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Botanical Institute of the Christian-Albrechts-University of Kiel Genetics and molecularbiology in plants

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11928:RNAseq-Col-0 biol rep 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: flowering stage

text: wild type genotype

text: not applicable

characteristic: isolate

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: flower

text: Arabidopsis thaliana

text: RNAseq-Col-0 biol rep 2

characteristic: title


E-MTAB-11928:RNAseq-dweorg1 biol rep 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

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