status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Senckenber Biodiversity and Climate Research Centre Frankfurt

characteristic: Submitter Id

text: Chironomus riparius

characteristic: organism

text: Chironomus riparius

text: L4 Larvae

characteristic: tissue type

characteristic: title


text: Senckenber Biodiversity and Climate Research Centre Frankfurt

text: public

text: Chironomus riparius

text: Chironomus riparius

text: L4 Larvae


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

tag: Namespace:WASHINGTON UNIVERSITY IN ST. LOUIS

text: Stool

characteristic: bio material

text: 14-member community

characteristic: description

text: Mus musculus

characteristic: host scientific name

text: metagenome

text: metagenome


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: Stool

text: 10-member community

text: Mus musculus

text: metagenome

text: metagenome


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: Stool

text: 4-member community

text: Mus musculus

text: metagenome

text: metagenome


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: Liver

text: house mouse

characteristic: common name

text: unsupplemented

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: Liver

text: house mouse

text: N-methylserotonin in water

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: Colon

text: house mouse

text: unsupplemented

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: Colon

text: house mouse

text: N-methylserotonin in water

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: TYG

characteristic: media

text: Bacteroides ovatus

text: Bacteroides ovatus

characteristic: supplementation


text: WASHINGTON UNIVERSITY IN ST. LOUIS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: TYG

text: Bacteroides ovatus

text: Bacteroides ovatus

text: 50 mg OF


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MEGA

text: Bacteroides ovatus

text: Bacteroides ovatus


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: MEGA

text: Bacteroides ovatus

characteristic: organism

text: Bacteroides ovatus

text: 50 mg OF

characteristic: title


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: TYG without hemin

text: Bacteroides ovatus

text: Bacteroides ovatus


text: WASHINGTON UNIVERSITY IN ST. LOUIS

text: public

text: TYG without hemin

text: Bacteroides ovatus

text: Bacteroides ovatus

text: 50 mg OF


text: public

text: Chironomus riparius

text: Chironomus riparius


PC3 Control Rep1

text: UNIVERSITY OF OULU

text: public

text: PC3 Control Rep1

tag: Namespace:UNIVERSITY OF OULU

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

text: Role of hemidesmosomes disassembly in PTEN-negative PC3 cell line

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: PC3 Control Rep1


PC3 Control Rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: PC3 Control Rep2

text: human

characteristic: common name

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina

text: PC3 Control Rep2


PC3 ITGA6ko Rep1

text: UNIVERSITY OF OULU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PC3 ITGA6ko Rep1

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: PC3 ITGA6ko Rep1

characteristic: title


PC3 ITGA6ko Rep2

text: UNIVERSITY OF OULU

text: public

text: PC3 ITGA6ko Rep2

text: human

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: PC3 ITGA6ko Rep2


PC3 ITGB4ko Rep1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: PC3 ITGB4ko Rep1

text: human

characteristic: common name

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina

text: PC3 ITGB4ko Rep1


PC3 ITGB4ko Rep2

text: UNIVERSITY OF OULU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PC3 ITGB4ko Rep2

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: PC3 ITGB4ko Rep2

characteristic: title


PC3 PLEC ITGA6 dKO Rep1

text: UNIVERSITY OF OULU

text: public

text: PC3 PLEC ITGA6 dKO Rep1

text: human

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: PC3 PLEC ITGA6 dKO Rep1


PC3 PLEC ITGA6 dKO Rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OULU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: PC3 PLEC ITGA6 dKO Rep2

text: human

characteristic: common name

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Illumina

text: PC3 PLEC ITGA6 dKO Rep2


PC3 PLEC ITGB4 dKO Rep1

text: UNIVERSITY OF OULU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PC3 PLEC ITGB4 dKO Rep1

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: environment (biome)

characteristic: environment (feature)

text: Finland

text: human-associated

text: eukaryote

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: PC3 PLEC ITGB4 dKO Rep1

characteristic: title


PC3 PLEC ITGB4 dKO Rep2

text: UNIVERSITY OF OULU

text: public

text: PC3 PLEC ITGB4 dKO Rep2

text: human

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: eukaryote

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: PC3 PLEC ITGB4 dKO Rep2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: microbiome

characteristic: common name

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:10` of the smoking group, at day 0 (baseline)

characteristic: description

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:25` of the smoking group, at day 0 (baseline)

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:35` of the control group, at day 0 (baseline)

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:24` of the smoking group, at day 21 during active smoking

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:42` of the control group, at day 21

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:21` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:22` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:23` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:25` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:33` of the control group, at day 35

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:34` of the control group, at day 35

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:35` of the control group, at day 35

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:42` of the control group, at day 35

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:43` of the control group, at day 35

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:NS:44` of the control group, at day 35

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:6` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:7` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:8` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: stool (shotgun) microbiome sample of mouse ID:`naive_smoking:SMK:9` of the smoking group, at day 35 during smoking cessation

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: C57 HFD day24-->SW HFD (GF): stool (shotgun) microbiome sample of GF mouse recieving FT from smoking mouse

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: C57 HFD day24-->SW HFD (GF): stool (shotgun) microbiome sample of GF mouse recieving FT from control mouse

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: C57 HFD day7-->SW HFD (GF): stool (shotgun) microbiome sample of GF mouse recieving FT from control mouse

text: metagenome

text: metagenome


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: microbiome

text: C57 HFD day7-->SW HFD (GF): stool (shotgun) microbiome sample of GF mouse recieving FT from smoking mouse

text: metagenome

text: metagenome


E-MTAB-10926:Sample 21

text: public

text: E-MTAB-10926:Sample 21

tag: Namespace:Section of Paediatric Infectious Disease, Faculty of Medicine, Imperial College London

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: steroid and interferon treatment

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: Protocols: Whole blood was collected at the time of recruitment into PAXgene blood miRNA tubes (PreAnalytiX), frozen, and total RNA (including RNA > 18 nucleotides) was isolated according to the manufacturer’s instructions (Qiagen). RNA samples were stored at −80°C, before undergoing an additional DNAse treatment using an RNA clean & concentrator kit (Zymo Research). Input material was normalised and strand specific library preparation was completed using NEBNext® Ultra™ II mRNA kit (NEB) and NEB rRNA/globin depletion probes following manufacturer’s instructions. Libraries were on a Tetrad (Bio-Rad) using in-house unique dual indexing primers. Individual libraries were normalised using Qubit and pooled together. The pooled library was diluted to ~10 nM for storage and denatured and further diluted prior to loading on the sequencer.

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 21


E-MTAB-10926:Sample 49

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Section of Paediatric Infectious Disease, Faculty of Medicine, Imperial College London

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10926:Sample 49

text: ArrayExpress

text: monoclonal antibody treatment

text: WHO severity score 5

text: human

characteristic: common name

characteristic: description

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 49


E-MTAB-10926:Sample 20

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 20

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: steroid and monoclonal antibody treatment

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 20

characteristic: title


E-MTAB-10926:Sample 50

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 50

text: ArrayExpress

text: WHO severity score 7

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: severe disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 50


E-MTAB-10926:Sample 51

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 51

text: ArrayExpress

text: WHO severity score 5

text: human

characteristic: common name

characteristic: description

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 51


E-MTAB-10926:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 1

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: no steroid, monoclonal antibody or interferon treatment

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 1

characteristic: title


E-MTAB-10926:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 10

text: ArrayExpress

text: WHO severity score 1

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: mild disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 10


E-MTAB-10926:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 11

text: ArrayExpress

text: WHO severity score 1

text: human

characteristic: common name

characteristic: description

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 11


E-MTAB-10926:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 12

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 12

characteristic: title


E-MTAB-10926:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 13

text: ArrayExpress

text: WHO severity score 1

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: mild disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 13


E-MTAB-10926:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 14

text: ArrayExpress

text: WHO severity score 1

text: human

characteristic: common name

characteristic: description

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 14


E-MTAB-10926:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 15

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 15

characteristic: title


E-MTAB-10926:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 16

text: ArrayExpress

text: WHO severity score 1

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: mild disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 16


E-MTAB-10926:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 17

text: ArrayExpress

text: WHO severity score 1

text: human

characteristic: common name

characteristic: description

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 17


E-MTAB-10926:Sample 18

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 18

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 18

characteristic: title


E-MTAB-10926:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 19

text: ArrayExpress

text: WHO severity score 1

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: mild disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 19


E-MTAB-10926:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 2

text: ArrayExpress

text: WHO severity score 1

text: human

characteristic: common name

characteristic: description

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 2


E-MTAB-10926:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 3

characteristic: title


E-MTAB-10926:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 4

text: ArrayExpress

text: WHO severity score 1

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: mild disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 4


E-MTAB-10926:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 5

text: ArrayExpress

text: WHO severity score 1

text: human

characteristic: common name

characteristic: description

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 5


E-MTAB-10926:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 6

characteristic: title


E-MTAB-10926:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 7

text: ArrayExpress

text: WHO severity score 1

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: mild disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 7


E-MTAB-10926:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 8

text: ArrayExpress

text: WHO severity score 1

text: human

characteristic: common name

characteristic: description

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-10926:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 9

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 1

characteristic: clinical information

text: human

text: adult

text: mild disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 9

characteristic: title


E-MTAB-10926:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 22

text: ArrayExpress

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 22


E-MTAB-10926:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 23

text: ArrayExpress

text: WHO severity score 3

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 23


E-MTAB-10926:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 24

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 24

characteristic: title


E-MTAB-10926:Sample 25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 25

text: ArrayExpress

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 25


E-MTAB-10926:Sample 26

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 26

text: ArrayExpress

text: WHO severity score 4

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 26


E-MTAB-10926:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 27

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 27

characteristic: title


E-MTAB-10926:Sample 30

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 30

text: ArrayExpress

text: WHO severity score 3

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 30


E-MTAB-10926:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 31

text: ArrayExpress

text: WHO severity score 4

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 31


E-MTAB-10926:Sample 32

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 32

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 3

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 32

characteristic: title


E-MTAB-10926:Sample 34

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 34

text: ArrayExpress

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 34


E-MTAB-10926:Sample 35

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 35

text: ArrayExpress

text: WHO severity score 4

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 35


E-MTAB-10926:Sample 37

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 37

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 37

characteristic: title


E-MTAB-10926:Sample 38

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 38

text: ArrayExpress

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 38


E-MTAB-10926:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 39

text: ArrayExpress

text: WHO severity score 4

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 39


E-MTAB-10926:Sample 40

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 40

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 40

characteristic: title


E-MTAB-10926:Sample 41

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 41

text: ArrayExpress

text: WHO severity score 3

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 41


E-MTAB-10926:Sample 42

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 42

text: ArrayExpress

text: WHO severity score 3

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 42


E-MTAB-10926:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 44

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 44

characteristic: title


E-MTAB-10926:Sample 45

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 45

text: ArrayExpress

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 45


E-MTAB-10926:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 46

text: ArrayExpress

text: WHO severity score 6

text: human

characteristic: common name

characteristic: description

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 46


E-MTAB-10926:Sample 47

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 47

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical history

text: WHO severity score 7

characteristic: clinical information

text: human

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 47

characteristic: title


E-MTAB-10926:Sample 48

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 48

text: ArrayExpress

text: WHO severity score 7

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: severe disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 48


E-MTAB-10926:Sample 52

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 52

text: ArrayExpress

text: WHO severity score 5

text: human

characteristic: common name

characteristic: description

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 52


E-MTAB-10926:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 28

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: steroid treatment

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 28

characteristic: title


E-MTAB-10926:Sample 29

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 29

text: ArrayExpress

text: steroid treatment

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 29


E-MTAB-10926:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 33

text: ArrayExpress

text: steroid treatment

text: WHO severity score 4

text: human

characteristic: common name

characteristic: description

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 33


E-MTAB-10926:Sample 36

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 36

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: steroid treatment

characteristic: clinical history

text: WHO severity score 4

characteristic: clinical information

text: human

text: adult

text: moderate disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 36

characteristic: title


E-MTAB-10926:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 43

text: ArrayExpress

text: steroid treatment

text: WHO severity score 4

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: moderate disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 43


E-MTAB-10926:Sample 53

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10926:Sample 53

text: ArrayExpress

text: steroid treatment

text: WHO severity score 6

text: human

characteristic: common name

characteristic: description

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 53


E-MTAB-10926:Sample 54

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10926:Sample 54

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: steroid treatment

characteristic: clinical history

text: WHO severity score 5

characteristic: clinical information

text: human

text: adult

text: severe disease severity

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 54

characteristic: title


E-MTAB-10926:Sample 55

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10926:Sample 55

text: ArrayExpress

text: steroid treatment

text: WHO severity score 6

text: human

text: adult

characteristic: developmental stage

characteristic: disease

text: severe disease severity

characteristic: disease staging

characteristic: individual

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 55


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BioSysM - LMU Munich

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BioSysM - LMU Munich

text: ArrayExpress

characteristic: cell line

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Three cell lines (WT J1, Tet1 KO H9 and Tet1 CM D7) were cultured as independent triplicates. The generation of Tet1 KO (clone H9) and Tet1 CM (clone D7) mESC lines was described previously (18, 30). Mouse ESCs were cultured in “Serum LIF” conditions and as independent replicates for 6 days prior to experiments. Here the cells were maintained on 0.2% gelatin-coated dishes in Dulbecco's modified Eagle's medium (Sigma) supplemented with 16% fetal bovine serum (FBS, Sigma), 0.1 mM ß-mercaptoethanol (Invitrogen), 2 mM L-glutamine (Sigma), 1× MEM Non-essential amino acids (Sigma), 100 U/mL penicillin, 100 μg/mL streptomycin (Sigma), LIF (ESGRO, Millipore). The genomic DNA was isolated using the QIAamp DNA Mini Kit (QIAGEN). DNA concentration was measured using Nanodrop (NanoPhotometer NP80, Implen). The gDNA was then diluted to 10ng/µL in 200µL TE buffer. To control the conversion efficiency 0,01 ng pUC19 methylated DNA and 0,2 ng unmethylated lambda DNA were added. The DNA was sheared into 350 - 400 bp fragments using the Bioruptor Plus sonication device (Diagenode) (30s on/off, 20 cycles). Bioanalyzer (Agilent) was used to control for the shearing efficiency. For library preparation 200 ng of the sheared DNA were used. The final EM-seq library preparation was performed according to the manufacturer's instructions (New England Biolabs).

characteristic: description

text: mouse embryo stage

text: TET1 catalytic mutant

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: blastocyst

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BioSysM - LMU Munich

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mouse embryonic stem cell

text: house mouse

text: mouse embryo stage

characteristic: developmental stage

text: TET1 knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: blastocyst

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BioSysM - LMU Munich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

text: mouse embryo stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: blastocyst

characteristic: organism part

text: Mus musculus


text: BioSysM - LMU Munich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: cell line

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: For RNA-seq, three different cell lines (WT J1, Tet1 KO H9, Tet1 CM D7) were cultured as independent quadruplicates. The generation of Tet1 KO (clone H9) and Tet1 CM (clone D7) mESC lines was described previously (18, 30). Mouse ESCs were cultured in “Serum LIF” conditions and as independent replicates for 6 days prior to experiments. Here the cells were maintained on 0.2% gelatin-coated dishes in Dulbecco's modified Eagle's medium (Sigma) supplemented with 16% fetal bovine serum (FBS, Sigma), 0.1 mM ß-mercaptoethanol (Invitrogen), 2 mM L-glutamine (Sigma), 1× MEM Non-essential amino acids (Sigma), 100 U/mL penicillin, 100 μg/mL streptomycin (Sigma), LIF (ESGRO, Millipore). RNA was isolated using the NucleoSpin Triprep Kit (Machery-Nagel) according to the manufacturer’s instructions. Isolated total RNA was normalised and subjected to RNA sequencing using a version of the prime-seq method (https://www.protocols.io/view/prime-seq-s9veh66). This method is based on the single cell RNA-seq method mcSCRB-seq (90) and is a three prime counting method that includes a sample specific barcode sequence (see scan name) and unique molecular identifiers (UMI) for accurate quantification of gene expression. Here we used the Nextera XT Kit (Illumina) for sequencing library preparation as described in the mcSCRB-seq protocol (90).

text: mouse embryo stage

text: normal

characteristic: disease

text: TET1 catalytic mutant

text: Mus musculus

text: Mus musculus

text: blastocyst

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BioSysM - LMU Munich

text: public

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

characteristic: common name

characteristic: description

text: mouse embryo stage

text: normal

text: TET1 knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: blastocyst

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

text: BioSysM - LMU Munich

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mouse embryonic stem cell

text: house mouse

text: mouse embryo stage

characteristic: developmental stage

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: blastocyst

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


E-MTAB-10984:GFP 1

text: WASHINGTON UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-10984:GFP 1

tag: Namespace:WASHINGTON UNIVERSITY

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Mice were dissected and midline laparotomy was performed with immediate excision of ~50-100mg left hepatic lobe. This was snap frozen in liquid nitrogen within 1 minute of the time of death. Trizol Reagent nucleic acid extraction protocol was performed exactly per manufacturer specification RNA sequencing was performed by the Washington University Genome Technology Access Center (GTAC) as we reported (Y. Zhang et al., Hepatic arginase 2 (Arg2) is sufficient to convey the therapeutic metabolic effects of fasting. Nature Communications 10, 1587 (2019).) . Library preparation was performed with 10ug of total RNA with a Bioanalyzer RIN score greater than 8.0. Ribosomal RNA was removed by poly-A selection using Oligo-dT beads (mRNA Direct kit, Life Technologies). mRNA was fragmented and reverse transcribed to yield cDNA using SuperScript III RT enzyme (Life Technologies) and random hexamers. A second strand reaction was performed to yield ds-cDNA, and then had Illumina sequencing adapters ligated to the ends.

characteristic: description

text: diabetes mellitus

characteristic: disease

text: GFP expression control

characteristic: genetic modification

text: db/db

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: left hepatic lobe

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex

text: C57 B6/J

characteristic: strain

text: GFP 1


E-MTAB-10984:GFP 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WASHINGTON UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10984:GFP 3

text: ArrayExpress

text: house mouse

text: diabetes mellitus

text: GFP expression control

text: db/db

text: Mus musculus

text: Mus musculus

text: liver

text: left hepatic lobe

text: Mus musculus

text: male

text: C57 B6/J

text: GFP 3


E-MTAB-10984:GFP 4

text: WASHINGTON UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10984:GFP 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: diabetes mellitus

text: GFP expression control

text: db/db

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: left hepatic lobe

text: Mus musculus

text: male

text: C57 B6/J

text: GFP 4

characteristic: title


E-MTAB-10984:NAMPT 5

text: WASHINGTON UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-10984:NAMPT 5

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: diabetes mellitus

characteristic: disease

text: NAMPT overexpression

characteristic: genetic modification

text: db/db

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

text: left hepatic lobe

text: Mus musculus

text: male

text: C57 B6/J

text: NAMPT 5


E-MTAB-10984:NAMPT 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WASHINGTON UNIVERSITY

text: public

text: E-MTAB-10984:NAMPT 6

text: ArrayExpress

text: house mouse

text: diabetes mellitus

text: NAMPT overexpression

text: db/db

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: left hepatic lobe

characteristic: sampling site

text: Mus musculus

text: male

characteristic: sex

text: C57 B6/J

characteristic: strain

text: NAMPT 6


E-MTAB-10984:NAMPT 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WASHINGTON UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10984:NAMPT 7

text: ArrayExpress

text: house mouse

text: diabetes mellitus

text: NAMPT overexpression

text: db/db

text: Mus musculus

text: Mus musculus

text: liver

text: left hepatic lobe

text: Mus musculus

text: male

text: C57 B6/J

text: NAMPT 7


E-MTAB-10984:NAMPT 8

text: WASHINGTON UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-10984:NAMPT 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: diabetes mellitus

text: NAMPT overexpression

text: db/db

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: left hepatic lobe

text: Mus musculus

text: male

text: C57 B6/J

text: NAMPT 8

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OSLO

text: public

tag: Namespace:UNIVERSITY OF OSLO

text: Atlantic cod

text: scRNAseq

characteristic: description

text: NIVAs Forskningsstasjon Solbergstrand, Norway" ERC000011

characteristic: geographic location (region and locality) checklist_accession

text: Gadus morhua

text: Gadus morhua

text: Spleen

characteristic: tissue type

text: Sample 1


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 2


characteristic: External Id

text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 3


text: UNIVERSITY OF OSLO

characteristic: INSDC center name

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 4


text: UNIVERSITY OF OSLO

characteristic: INSDC first public

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 5


text: UNIVERSITY OF OSLO

characteristic: INSDC last update

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 6


text: UNIVERSITY OF OSLO

text: public

characteristic: SRA accession

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 7


text: UNIVERSITY OF OSLO

text: public

characteristic: INSDC status

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 8


text: UNIVERSITY OF OSLO

text: public

characteristic: Submitter Id

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 9


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 10


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 11


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 12


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 13


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 14


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 15


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 16


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 17


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 18


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 19


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 20


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 21


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 22


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 23


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 24


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 25


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 26


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 27


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 28


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 29


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 30


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 31


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 32


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 33


text: UNIVERSITY OF OSLO

text: public

text: Atlantic cod

text: scRNAseq

text: Gadus morhua

text: Gadus morhua

text: Spleen

text: Sample 34


text: public

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROTHAMSTED RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ROTHAMSTED RESEARCH

characteristic: Submitter Id

text: Harlequin fly

characteristic: common name

text: Single Female individual taken for HiFi PacBio and multi-individual for Hi-C sequencing. Bought from a company that originally sourced in Germany.

characteristic: description

text: Germany

text: Chironomus riparius

characteristic: organism

text: Chironomus riparius

text: Chironomus riparius genome and annotation from the Pest Genomics Initiative

characteristic: title


text: ROTHAMSTED RESEARCH

text: public

characteristic: collection date

text: Harlequin fly

text: Raw HiFi PacBio reads. Single Female individual taken for HiFi PacBio and multi-individual for Hi-C sequencing. Bought from a company that originally sourced in Germany.

text: Germany

characteristic: geographic location (country and/or sea)

text: Chironomus riparius

text: Chironomus riparius

text: HiFi PacBio read for the Chironomus riparius genome and annotation from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: Harlequin fly

text: Hi-C Illumina paired end reads. Single Female individual taken for HiFi PacBio and multi-individual for Hi-C sequencing (Arima kit). Bought from a company that originally sourced in Germany.

text: Germany

text: Chironomus riparius

text: Chironomus riparius

text: Illumina Hi-C reads for the Chironomus riparius genome and annotation from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: western corn rootworm

text: Complete Chromosome genome assembly of Diabrotica virgifera virgifera. Unknown sex individual taken for HiFi PacBio and multi-individual for Hi-C sequencing. Collected in Minnesota in 1998. It is susceptible to all known resistant corn and common rootworm insecticides and is accepted as a standard susceptible control by all of the major rootworm researchers including University researchers. Genetic studies show that for all practical purposes it is the same as the Brookings WCR population.

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: Diabrotica_virgifera_virgifera_rawPacBio

text: western corn rootworm

text: HiFi PacBio reads from a single individual. Unknown sex individual taken for HiFi PacBio and multi-individual for Hi-C sequencing. Collected in Minnesota in 1998. It is susceptible to all known resistant corn and common rootworm insecticides and is accepted as a standard susceptible control by all of the major rootworm researchers including University researchers. Genetic studies show that for all practical purposes it is the same as the Brookings WCR population.

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera

text: HiFi PacBio reads for the Diabrotica virgifera virgifera genome and annotation from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: western corn rootworm

text: Hi-C Illumina paired end reads. Unknown sex individual taken for HiFi PacBio and multi-individual for Hi-C sequencing (Arima kit). Collected in Minnesota in 1998. It is susceptible to all known resistant corn and common rootworm insecticides and is accepted as a standard susceptible control by all of the major rootworm researchers including University researchers. Genetic studies show that for all practical purposes it is the same as the Brookings WCR population.

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera

text: Illumina Hi-C reads for the Diabrotica virgifera virgifera genome and annotation from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: Diabrotica_virgifera_virgifera_rawPacBio2

text: western corn rootworm

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera


text: ROTHAMSTED RESEARCH

text: public

text: Diabrotica_virgifera_virgifera_rawPacBio3

text: western corn rootworm

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera


text: ROTHAMSTED RESEARCH

text: public

text: Diabrotica_virgifera_virgifera_rawPacBio4

text: western corn rootworm

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera


text: ROTHAMSTED RESEARCH

text: public

text: brown planthopper

text: Hi-C Illumina reads for the Nilaparvata lugens genome. Multi-individual taken for CLR PacBio and multi-individual for Hi-C sequencing (Arima kit). One individual Nanopore sequencing. An insecticide susceptible strain which has become wingless during long-term culture. The strain has been maintained at Rothamsted since 2012, when it was supplied by Bayer. Bayer originally collected it from JAPAN in 1984 (close to Yuki Research Center).

text: Japan

text: Nilaparvata lugens

text: Nilaparvata lugens

text: Illumina Hi-C reads for the Nilaparvata lugens genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: brown planthopper

text: CLR PacBio reads for the Nilaparvata lugens genome. Multi-individual taken for CLR PacBio and multi-individual for Hi-C sequencing. One individual Nanopore sequencing. An insecticide susceptible strain which has become wingless during long-term culture. The strain has been maintained at Rothamsted since 2012, when it was supplied by Bayer. Bayer originally collected it from JAPAN in 1984 (close to Yuki Research Center).

text: Japan

text: Nilaparvata lugens

text: Nilaparvata lugens

text: CLR PacBio reads for the Nilaparvata lugens genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: brown planthopper

text: MinION nanopore reads from 2 flow cells for the Nilaparvata lugens genome. Multi-individual taken for CLR PacBio and multi-individual for Hi-C sequencing. One individual Nanopore sequencing - 2 flow cells, the same individual used for 10X illumina sequencing. An insecticide susceptible strain which has become wingless during long-term culture. The strain has been maintained at Rothamsted since 2012, when it was supplied by Bayer. Bayer originally collected it from JAPAN in 1984 (close to Yuki Research Center).

text: Japan

text: Nilaparvata lugens

text: Nilaparvata lugens

text: MinION nanopore reads for the Nilaparvata lugens genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: brown planthopper

text: 10X library of Illumina paired end for the Nilaparvata lugens genome. Multi-individual taken for CLR PacBio and multi-individual for Hi-C sequencing. One individual Nanopore sequencing - 2 flow cells, the same individual used for 10X illumina sequencing. An insecticide susceptible strain which has become wingless during long-term culture. The strain has been maintained at Rothamsted since 2012, when it was supplied by Bayer. Bayer originally collected it from JAPAN in 1984 (close to Yuki Research Center).

text: Japan

text: Nilaparvata lugens

text: Nilaparvata lugens

text: Illumina 10X reads for the Nilaparvata lugens genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: southern green stink bug

text: PacBio CLR reads for the Nezara viridula genome. Unknown sex individual taken for CLR PacBio and 10X, multi-individual for Hi-C sequencing. Insecticide susceptible individuals.

text: France

text: Nezara viridula

text: Nezara viridula

text: PacBio CLR reads for the Nezara_viridula genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: southern green stink bug

text: Illumina Hi-C reads for the Nezara viridula genome. Unknown sex individual taken for CLR PacBio and 10X, multi-individual for Hi-C sequencing (Arima kit). Insecticide susceptible individuals.

text: France

text: Nezara viridula

text: Nezara viridula

text: Illumina Hi-C reads for the Nezara_viridula genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: southern green stink bug

text: Illumina Hi-C reads for the Nezara viridula genome. Unknown sex individual taken for CLR PacBio, 10X Illumina and multi-individual for Hi-C sequencing. Insecticide susceptible individuals.

text: France

text: Nezara viridula

text: Nezara viridula

text: Illumina 10X reads for the Nezara_viridula genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: southern green stink bug

text: PacBio CLR reads for the Nezara viridula genome. Unknown sex individual taken for CLR PacBio and 10X, multi-individual for Hi-C sequencing. Insecticide suseptible individuals.

text: France

text: Nezara viridula

text: Nezara viridula


text: ROTHAMSTED RESEARCH

text: public

text: cotton aphid

text: Hi-C reads for the Aphis gossypii genome. Multi-individual taken for CLR PacBio and multi-individual for Hi-C (Arima kit) and 10X illumina sequencing. Bayer culture since 2001, collected from cucumber greehouse in Hohenheim Germany.

text: Germany

text: Aphis gossypii

text: Aphis gossypii

text: Illumina HiC reads for the Aphis gossypii genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cotton aphid

text: Hi-C reads for the Aphis gossypii genome. Multi-individual taken for CLR PacBio (contaminated with myzus persicae) and multi-individual for Hi-C and 10X illumina sequencing. Bayer culture since 2001, collected from cucumber greehouse in Hohenheim Germany.

text: Germany

text: Aphis gossypii

text: Aphis gossypii

text: CLR PacBio reads for the Aphis_gossypii genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage stem flea beetle

text: Illumina 10X reads for the Psylliodes chrysocephala genome. Unknown sex individual used for 10X and then male 10X and female 10X samples. Single individual with parastoid wasp taken for PacBio HiFi. Single adult beetle from field sample collected at Rothamsted farm on 28 July 2017. GPS 51.8093, -0.3548

text: United Kingdom

text: Psylliodes chrysocephala

text: Psylliodes chrysocephala

text: Illumina 10X reference reads for the Psylliodes chrysocephala genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage stem flea beetle

text: United Kingdom

text: Psylliodes chrysocephala

text: Psylliodes chrysocephala

text: Illumina 10X female reads for the Psylliodes chrysocephala genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage stem flea beetle

text: United Kingdom

text: Psylliodes chrysocephala

text: Psylliodes chrysocephala

text: Illumina 10X Male reads for the Psylliodes chrysocephala genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage stem flea beetle

text: HiFi PacBio reads for the Psylliodes chrysocephala genome. Unknown sex individual used for 10X and then male 10X and female 10X samples. Single individual with parastoid wasp taken for PacBio HiFi. Single adult beetle from field sample collected at Rothamsted farm on 28 July 2017. GPS 51.8093, -0.3548

text: United Kingdom

text: Psylliodes chrysocephala

text: Psylliodes chrysocephala

text: HiFi PacBio reads for the Psylliodes chrysocephala genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage stem flea beetle

text: Illumina HiC reads (Arima kit) for the Psylliodes chrysocephala genome. Unknown sex individual used for 10X and then male 10X and female 10X samples. Single individual with parastoid wasp taken for PacBio HiFi. Adult beetles from field sample collected at Rothamsted farm on 28 July 2017. GPS 51.8093, -0.3548

text: United Kingdom

text: Psylliodes chrysocephala

text: Psylliodes chrysocephala

text: Illumina Hi-C reference reads for the Psylliodes chrysocephala genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cucumber beetle

text: Illumina 10X reads for the Diabrotica balteata genome. Unknown sex multi-individual used for PacBio CLR and Hi-C. 10X Illumina reads single individual. Not chemical resistance. collected in the USA 27th July 2011

text: USA

text: Diabrotica balteata

text: Diabrotica balteata

text: Illumina 10X reads for the Diabrotica balteata genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cucumber beetle

text: PacBio CLR reads for the Diabrotica balteata genome. Unknown sex multi-individual used for PacBio CLR and Hi-C, 10X Illumina reads single individual. Not chemical resistance. collected in the USA 27th July 2011

text: USA

text: Diabrotica balteata

text: Diabrotica balteata

text: PacBio CLR reads for the Diabrotica balteata genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cucumber beetle

text: Illumina Hi-C reads for the Diabrotica balteata genome. Unknown sex multi-individual used for PacBio CLR and Hi-C (Arima kit). 10X Illumina reads single individual. Not chemical resistance. collected in the USA 27th July 2011

text: USA

text: Diabrotica balteata

text: Diabrotica balteata

text: Illumina Hi-C reads for the Diabrotica balteata genome from the Pest Genomics Initiative.


Bemisia tabaci_HIC

text: ROTHAMSTED RESEARCH

text: public

text: Bemisia tabaci_HIC

text: Silver leaf whitefly

text: Illumina Hi-C reads for the Bemisia tabaci Q-type almeria genome. Unknown sex multi-individual used for PacBio CLR and Hi-C (Arima kit). Originally sourced from Spain. Obtained by Syngenta from Rothamsted Research in 2007

text: United Kingdom

text: Bemisia tabaci

text: Bemisia tabaci

text: Illumina Hi-C reads for the Bemisia tabaci genome from the Pest Genomics Initiative.


Bemisia tabaci_CLR

text: ROTHAMSTED RESEARCH

text: public

text: Bemisia tabaci_CLR

text: Silver leaf whitefly

text: PacBio CLR reads for the Bemisia tabaci Q-type almeria genome. Unknown sex multi-individual used for PacBio CLR and Hi-C. Originally sourced from Spain. Obtained by Syngenta from Rothamsted Research in 2007

text: United Kingdom

text: Bemisia tabaci

text: Bemisia tabaci

text: PacBio CLR reads for the Bemisia tabaci genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cucumber beetle

text: PacBio Iso-seq reads from multi-individual adults. Not chemical resistance. collected in the USA 27th July 2011

text: USA

text: Diabrotica balteata

text: Diabrotica balteata

text: PacBio Iso-seq reads for the Diabrotica balteata transcriptome Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: sugarcane borer

text: PacBio Iso-seq reads for the Diatraea saccharalis transcriptome. Unknown sex single individual used for PacBio CLR and, HiFi and Hi-C. Sourced on 03.25.2020; USA; 700 Chesterfield Pwky W Chesterfield, MO 63017 (Bayer)

text: USA

text: Diatraea saccharalis

text: Diatraea saccharalis

text: PacBio Iso-seq reads for the Diatraea saccharalis transcriptome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: sugarcane borer

text: PacBio HiFi reads for the Diatraea saccharalis genome. Unknown sex single individual used for PacBio CLR and, HiFi and Hi-C. Sourced on 03.25.2020; USA; 700 Chesterfield Pwky W Chesterfield, MO 63017 (Bayer)

text: USA

text: Diatraea saccharalis

text: Diatraea saccharalis

text: PacBio HiFi reads for the Diatraea saccharalis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: sugarcane borer

text: Illumina Hi-C reads for the Diatraea saccharalis genome. Unknown sex single individual used for PacBio CLR and, HiFi and Hi-C (Arima kit). Sourced on 03.25.2020; USA; 700 Chesterfield Pwky W Chesterfield, MO 63017 (Bayer)

text: USA

text: Diatraea saccharalis

text: Diatraea saccharalis

text: Illumina Hi-C reads for the Diatraea saccharalis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: sugarcane borer

text: PacBio CLR reads for the Diatraea saccharalis genome. Unknown sex single individual used for PacBio CLR and, HiFi and Hi-C. Sourced on 03.25.2020; USA; 700 Chesterfield Pwky W Chesterfield, MO 63017 (Bayer)

text: USA

text: Diatraea saccharalis

text: Diatraea saccharalis

text: PacBio CLR reads for the Diatraea saccharalis genome from the Pest Genomics Initiative.


Phaedon cochleariae_HiC

text: ROTHAMSTED RESEARCH

text: public

text: Phaedon cochleariae_HiC

text: mustard beetle

text: Illumina Hi-C reads for the Phaedon cochleariae genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads (Arima kit). Sample taken on 01.02.1961; UK; England (Rothamsted Experimental Station)

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae

text: Illumina Hi-C reference reads for the Phaedon cochleariae genome from the Pest Genomics Initiative.


Phaedon cochleariae_HiFi

text: ROTHAMSTED RESEARCH

text: public

text: Phaedon cochleariae_HiFi

text: mustard beetle

text: PacBio HiFi reads for the Phaedon cochleariae genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Sample taken on 01.02.1961; UK; England (Rothamsted Experimental Station)

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae

text: PacBio HiFi reference reads for the Phaedon cochleariae genome from the Pest Genomics Initiative.


Phaedon cochleariae_HiFi2

text: ROTHAMSTED RESEARCH

text: public

text: Phaedon cochleariae_HiFi2

text: mustard beetle

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae


Phaedon cochleariae_isoseq2

text: ROTHAMSTED RESEARCH

text: public

text: Phaedon cochleariae_isoseq2

text: mustard beetle

text: PacBio iso-seq reads for the Phaedon cochleariae genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Sample taken on 01.02.1961; UK; England (Rothamsted Experimental Station)

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae

text: PacBio iso-seq reference reads for the Phaedon cochleariae transcriptome from the Pest Genomics Initiative.


Phaedon cochleariae_isoseq1

text: ROTHAMSTED RESEARCH

text: public

text: Phaedon cochleariae_isoseq1

text: mustard beetle

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae


text: United Arab Emirates University, UAE

text: public

tag: Namespace:United Arab Emirates University, UAE

text: 6 to 8

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: C57BL/6 or transgenic male mice, between 8-10 weeks old, were culled by CO2 administration. The proximal small intestine was dissected and rinsed with phosphate buffer saline (PBS) and mucosal scrapes were used for isolation of total RNA using the RNeasy Mini Kit (QIAGEN). isolation of total RNA using the RNeasy Mini Kit (QIAGEN) Strand-specific sequencing libraries were prepared with the TruSeq stranded Total RNA kit (Illumina)

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

text: proximal small intestine

characteristic: sampling site

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: United Arab Emirates University, UAE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 6 to 8

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: small intestine

text: proximal small intestine

text: Mus musculus


text: ROTHAMSTED RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: stripe beetle

characteristic: common name

text: Illumina Hi-C reads for the Phyllotreta striolata and Phyllotreta cruciferae genome. Single individual, unknown sex used for HiFi PacBio. Both species present in the Hi-C Illumina reads (Arima kit). Mixed sample with Phyllotreta cruciferae. taken from Canada in September 2020.

characteristic: description

text: Canada

text: Phyllotreta striolata

text: Phyllotreta striolata

text: Illumina Hi-C reference reads for the Phyllotreta striolata and Phyllotreta cruciferae genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

characteristic: collection date

text: stripe beetle

text: PacBio HiFi reads for the Phyllotreta striolata genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Mixed sample with Phyllotreta cruciferae. taken from Canada in September 2020.

text: Canada

characteristic: geographic location (country and/or sea)

text: Phyllotreta striolata

characteristic: organism

text: Phyllotreta striolata

text: PacBio HiFi reference reads for the Phyllotreta striolata genome from the Pest Genomics Initiative.

characteristic: title


text: ROTHAMSTED RESEARCH

text: public

text: crucifer flea beetle

text: PacBio HiFi reads for the Phyllotreta cruciferae genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Mixed sample with Phyllotreta striolata. taken from Canada in September 2020.

text: Canada

text: Phyllotreta cruciferae

text: Phyllotreta cruciferae

text: PacBio HiFi reference reads for the Phyllotreta cruciferae genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage seed weevil

text: Illumina Hi-C reads for the Ceutorhynchus assimilis genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads (Arima kit). Collected from Rothamsted Farm and Cross Farm in Harpenden during Oilseed Rape harvest in July 2020. Cross Farm GPS 51.803468, -0.331117

text: United Kingdom

text: Ceutorhynchus assimilis

text: Ceutorhynchus assimilis

text: Illumina Hi-C reads for the Ceutorhynchus assimilis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage seed weevil

text: PacBio HiFi reads for the Ceutorhynchus assimilis genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Collected from Rothamsted Farm and Cross Farm in Harpenden during Oilseed Rape harvest in July 2020. Cross Farm GPS 51.803468, -0.331117

text: United Kingdom

text: Ceutorhynchus assimilis

text: Ceutorhynchus assimilis

text: PacBio HiFi reads for the Ceutorhynchus assimilis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage seed weevil

text: Illumina RNA-seq reads for the Ceutorhynchus assimilis genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Collected from Rothamsted Farm and Cross Farm in Harpenden during Oilseed Rape harvest in July 2020. Cross Farm GPS 51.803468, -0.331117

text: United Kingdom

text: Ceutorhynchus assimilis

text: Ceutorhynchus assimilis

text: Illumina RNA-seq reads for the Ceutorhynchus assimilis transcriptome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: neotropical brown stinkbug

text: Illumina Hi-C reads for the Euschistus heros genome. multi-individual Hi-C (Arima kit). Sensitive to pesticide. Brazil sourced.

text: Brazil

text: Euschistus heros

text: Euschistus heros

text: Illumina Hi-C reads for the Euschistus heros genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: soybean looper

text: Illumina Hi-C reads for the Chrysodeixis includens genome. Unknown sex individual taken for nanopore, 10X Illumina, and multi-individual for Hi-C sequencing (Arima kit). 1988 from South Carolina USA. More recent collections from Athens, Georgia, USA.

text: USA

text: Chrysodeixis includens

text: Chrysodeixis includens

text: Illumina Hi-C reads for the Chrysodeixis includens genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: African cotton leafworm

text: Illumina 10X reads for the Spodoptera littoralis genome. Single individual taken for CLR PacBio and 10X illumina sequencing. Suseptible, February 1963 Egypt from Syngenta Kaha Field station.

text: Egypt

text: Spodoptera littoralis

text: Spodoptera littoralis

text: Illumina 10X reads for the Spodoptera littoralis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: African cotton leafworm

text: PacBio CLR reads for the Spodoptera littoralis genome. Single individual taken for CLR PacBio and 10X illumina sequencing. Suseptible, February 1963 Egypt from Syngenta Kaha Field station.

text: Egypt

text: Spodoptera littoralis

text: Spodoptera littoralis

text: PacBio CLR reads for the Spodoptera littoralis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: beet armyworm

text: PacBio CLR reads for the Spodoptera exigua genome. Single individual taken for CLR PacBio and 10X illumina sequencing. Insecticide suseptible. In culture at Bayer since 2007, originally collected from an unknown host plant (Andermatt, Switzerland).

text: Switzerland

text: Spodoptera exigua

text: Spodoptera exigua

text: PacBio CLR reads for the Spodoptera exigua genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: beet armyworm

text: Illumina 10X reads for the Spodoptera exigua genome. Single individual taken for CLR PacBio and 10X illumina sequencing. Insecticide suseptible. In culture at Bayer since 2007, originally collected from an unknown host plant (Andermatt, Switzerland).

text: Switzerland

text: Spodoptera exigua

text: Spodoptera exigua

text: Illumina 10X reads for the Spodoptera exigua genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: striped riceborer

text: PacBio CLR reads for the Chilo suppressalis genome. Single individual taken for CLR PacBio, Hi-C (Arima kit) and 10X illumina sequencing. Insecticide suseptible. Syngenta received this strain from Aventis in April 2000

text: Chilo suppressalis

text: Chilo suppressalis

text: PacBio CLR reads for the Chilo suppressalis genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cucumber beetle

text: Iso-seq transcriptome assembly from multi-individual adults. Not chemical resistance. Collected in the USA 27th July 2011

text: USA

text: Diabrotica balteata

text: Diabrotica balteata

text: Iso-seq transcriptome assembly of Diabrotica balteata for the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: sugarcane borer

text: USA

text: Diatraea saccharalis

text: Diatraea saccharalis

text: Iso-seq transcriptome assembly of Diatraea saccharalis for the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: mustard beetle

text: Iso-seq transcriptome assembly for the Phaedon cochleariae genome. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Sample taken on 01.02.1961; UK; England (Rothamsted Experimental Station)

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae

text: Iso-seq transcriptome assembly of Phaedon cochleariae for the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: mustard beetle

text: Mitochondrial genome assembly of Phaedon cochleariae. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Sample taken on 01.02.1961; UK; England (Rothamsted Experimental Station)

text: United Kingdom

text: Phaedon cochleariae

text: Phaedon cochleariae

text: Mitochondrial genome assembly of Phaedon cochleariae for the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: sugarcane borer

text: Mitochondrial genome assembly from multi-individual adults. Not chemical resistance. Collected in the USA 27th July 2011

text: USA

text: Diatraea saccharalis

text: Diatraea saccharalis

text: Mitochondrial genome assembly of Diatraea saccharalis for the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: Diabrotica_virgifera_virgifera_Mitochondria

text: western corn rootworm

text: Mitochondrial genome assembly from a single individual. Unknown sex individual taken for HiFi PacBio and multi-individual for Hi-C sequencing. Collected in Minnesota in 1998. It is susceptible to all known resistant corn and common rootworm insecticides and is accepted as a standard susceptible control by all of the major rootworm researchers including University researchers. Genetic studies show that for all practical purposes it is the same as the Brookings WCR population.

text: USA

text: Diabrotica virgifera virgifera

text: Diabrotica virgifera virgifera

text: Mitochondrial genome assembly of Diabrotica virgifera virgifera from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: southern green stink bug

text: Mitochondrial genome assembly of Nezara viridula. Unknown sex individual taken for HiFi PacBio, 10X Illumina and multi-individual for Hi-C sequencing. Insecticide suseptible individuals.

text: France

text: Nezara viridula

text: Nezara viridula

text: Mitochondrial genome assembly of Nezara_viridula genome from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage stem flea beetle

text: Mitochondrial genome assembly of Psylliodes chrysocephala. Unknown sex individual used for 10X and then male 10X and female 10X samples. Single individual with parastoid wasp taken for PacBio HiFi. Single adult beetle from field sample collected at Rothamsted farm on 28 July 2017. GPS 51.8093, -0.3548

text: United Kingdom

text: Psylliodes chrysocephala

text: Psylliodes chrysocephala

text: Mitochondrial genome assembly of Psylliodes chrysocephala from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cucumber beetle

text: Mitochondrial genome assembly of Diabrotica balteata. Unknown sex multi-individual used for PacBio CLR and Hi-C. 10X Illumina reads single individual. Not chemical resistance. collected in the USA 27th July 2011

text: USA

text: Diabrotica balteata

text: Diabrotica balteata

text: Mitochondrial genome assembly of Diabrotica balteata from the Pest Genomics Initiative.


Bemisia tabaci_Mitochondria

text: ROTHAMSTED RESEARCH

text: public

text: Bemisia tabaci_Mitochondria

text: Silver leaf whitefly

text: Mitochondrial genome assembly of Bemisia tabaci Q-type almeria. Unknown sex multi-individual used for PacBio CLR and Hi-C. Originally sourced from Spain. Obtained by Syngenta from Rothamsted Research in 2007

text: United Kingdom

text: Bemisia tabaci

text: Bemisia tabaci

text: Mitochondrial genome assembly of Bemisia tabaci from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: stripe beetle

text: Mitochondrial genome assembly of Phyllotreta striolata. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Mixed sample with Phyllotreta cruciferae. taken from Canada in September 2020.

text: Canada

text: Phyllotreta striolata

text: Phyllotreta striolata

text: Mitochondrial genome assembly of Phyllotreta striolata from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: crucifer flea beetle

text: Mitochondrial genome assembly of Phyllotreta cruciferae. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Mixed sample with Phyllotreta striolata. taken from Canada in September 2020.

text: Canada

text: Phyllotreta cruciferae

text: Phyllotreta cruciferae

text: Mitochondrial genome assembly of Phyllotreta cruciferae from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: cabbage seed weevil

text: Mitochondrial genome assembly of Ceutorhynchus assimilis. Single individual, unknown sex used for HiFi PacBio and Hi-C Illumina reads. Collected from Rothamsted Farm and Cross Farm in Harpenden during Oilseed Rape harvest in July 2020. Cross Farm GPS 51.803468, -0.331117

text: United Kingdom

text: Ceutorhynchus assimilis

text: Ceutorhynchus assimilis

text: Mitochondrial genome assembly of Ceutorhynchus assimilis from the Pest Genomics Initiative.


text: ROTHAMSTED RESEARCH

text: public

text: Harlequin fly

text: Mitochondrial genome assembly of Chironomus riparius. Single Female individual taken for HiFi PacBio and multi-individual for Hi-C sequencing. Bought from a company that originally sourced in Germany.

text: Germany

text: Chironomus riparius

text: Chironomus riparius

text: Mitochondrial genome assembly of Chironomus riparius for Pest Genomics Initiative