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text: Illumina MiSeq, paired-end 2×250bp


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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (country and/or sea)

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text: water from aquifer 2 (static water table); pooled samples from depth z=15 cm distance from inflow x = 35, 65, 95 and 125 cm; T5: before second water table fluctuation

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text: Illumina MiSeq, paired-end 2×250bp


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characteristic: Submitter Id

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text: water from aquifer 2 (static water table); pooled samples from depth z=15 cm distance from inflow x = 35, 65, 95 and 125 cm; T6: after second water table fluctuation

characteristic: description

characteristic: environment (biome)

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text: France

text: metagenome

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text: Illumina MiSeq, paired-end 2×250bp

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text: water from aquifer 2 (static water table); pooled samples from depth z=15 cm distance from inflow x = 35, 65, 95 and 125 cm; T7: before core sampling campaign

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characteristic: geographic location (country and/or sea)

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text: water from aquifer 2 (static water table); inflow water; T1: incubation phase

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characteristic: Submitter Id

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text: water from aquifer 2 (static water table); inflow water; T2: incubation phase

characteristic: description

characteristic: environment (biome)

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text: metagenome

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text: Illumina MiSeq, paired-end 2×250bp

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characteristic: ENA-CHECKLIST

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text: water from aquifer 2 (static water table); inflow water; T3: before first water table fluctuation

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: project name

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characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC center name

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text: water from aquifer 2 (static water table); inflow water; T4: after first water table fluctuation

text: France

text: metagenome

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text: Illumina MiSeq, paired-end 2×250bp


text: UNIVERSITE DE STRASBOURG

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characteristic: Submitter Id

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text: water from aquifer 2 (static water table); inflow water; T5: before second water table fluctuation

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characteristic: ENA-CHECKLIST

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text: water from aquifer 2 (static water table); inflow water; T6: after second water table fluctuation

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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text: water from aquifer 2 (static water table); inflow water; T7: before core sampling campaign

text: France

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text: 2D-DCM: Effect of water table fluctuations on dichloromethane degradation in laboratory aquifers


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characteristic: Submitter Id

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text: metagenome

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text: Illumina MiSeq, paired-end 2×250bp

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text: water from aquifer 2 (static water table); outflow water; T2: incubation phase

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: metagenome

characteristic: project name

text: metagenome

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characteristic: ENA-FIRST-PUBLIC

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text: UNIVERSITE DE STRASBOURG

characteristic: INSDC center name

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text: water from aquifer 2 (static water table); outflow water; T3: before first water table fluctuation

text: France

text: metagenome

text: metagenome

text: Illumina MiSeq, paired-end 2×250bp


text: UNIVERSITE DE STRASBOURG

text: public

characteristic: Submitter Id

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text: water from aquifer 2 (static water table); outflow water; T4: after first water table fluctuation

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: France

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq, paired-end 2×250bp

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITE DE STRASBOURG

text: public

text: water from aquifer 2 (static water table); outflow water; T5: before second water table fluctuation

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: metagenome

characteristic: project name

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text: UNIVERSITE DE STRASBOURG

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text: water from aquifer 2 (static water table); outflow water; T6: after second water table fluctuation

text: France

text: metagenome

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text: Illumina MiSeq, paired-end 2×250bp


text: UNIVERSITE DE STRASBOURG

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characteristic: Submitter Id

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text: water from aquifer 2 (static water table); outflow water; T7: before core sampling campaign

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: France

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq, paired-end 2×250bp

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Lighthouse Lab in Glasgow / MRC-University of Glasgow Centre for Virus Research

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lighthouse Lab in Glasgow / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

text: Scotland

text: not provided

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: title

text: not provided


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:QUEEN'S UNIVERSITY BELFAST Institute for global food security (IGFS)

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_1 treated replicate1_MICROBExpress

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: Staphylococcus aureus subsp. aureus NCTC 8325

text: MSSA_ Lynronne_1_treated_exp1_rep1_M


text: QUEEN'S UNIVERSITY BELFAST Institute for global food security (IGFS)

text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_1 treated replicate2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: MSSA_ Lynronne_1_treated_exp1_rep2_M


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_1 treated replicate3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: MSSA_ Lynronne_1_treated_exp1_rep3_M


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_2 treated replicate1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: MSSA_ Lynronne_2_treated_exp1_rep1_M


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_2 treated replicate2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: MSSA_ Lynronne_2_treated_exp1_rep2_M


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_2 treated replicate3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: MSSA_ Lynronne_2_treated_exp1_rep3_M


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_3 treated replicate1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_3 treated replicate2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) Lynronne_3 treated replicate3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) HG4 treated replicate1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) HG4 treated replicate2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) HG4 treated replicate3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) untreated replicate1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) untreated replicate2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) untreated replicate3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) untreated replicate1_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) untreated replicate2_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: Staphylococcus aureus subsp. aureus NCTC 8325


text: QUEEN'S UNIVERSITY BELFAST Institute for global food security (IGFS)

text: public

text: Methicillin-sensitive Staphylococcus aureus (MSSA) untreated replicate3_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: Staphylococcus aureus subsp. aureus COL

text: Staphylococcus aureus subsp. aureus COL


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_1 treated replicate 1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: Staphylococcus aureus subsp. aureus USA300_TCH1516


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_1 treated replicate 2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_1 treated replicate 3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_2 treated replicate 1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_2 treated replicate 2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_2 treated replicate 3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_3 treated replicate 1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_3 treated replicate 2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 Lynronne_3 treated replicate 3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG4 treated replicate 1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG4 treated replicate 2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG4 treated replicate 3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 untreated replicate 1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 untreated replicate 2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: QUEEN'S UNIVERSITY BELFAST Institute for global food security (IGFS)

text: public

text: Methicillin-resistant Staphylococcus aureus USA300 untreated replicate 3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG2 treated replicate 1_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG2 treated replicate 2_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W

text: Staphylococcus aureus subsp. aureus USA300_TCH1516


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG2 treated replicate 3_MICROBExpress

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 untreated replicate 1_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 untreated replicate 2_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 untreated replicate 3_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG2 treated replicate 1_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG2 treated replicate 2_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: public

text: Methicillin-resistant Staphylococcus aureus USA300 HG2 treated replicate 3_Illumina_Ribo-Zero

text: United Kingdom

text: laboratory strain

text: 55∞ 21' 42.34 N -3∞ 26' 35.97 W


text: TEAGASC

text: public

text: Negative control

characteristic: common name

text: Shotgun reads from Deionised_water

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from PBS

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from Unused_cytobrush

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: synthetic metagenome

text: Shotgun reads from Mock_community

text: synthetic metagenome

text: synthetic metagenome


text: TEAGASC

text: public

text: bovine metagenome

text: Shotgun reads from Uterus

text: bovine metagenome

text: bovine metagenome


text: TEAGASC

text: public

text: bovine metagenome

text: Shotgun reads from Vagina

text: bovine metagenome

text: bovine metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from Peat_bedding

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: bovine metagenome

text: Shotgun reads from Peat

text: bovine metagenome

text: bovine metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from Air

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from Straw

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from Straw_bedding

text: metagenome

text: metagenome


text: TEAGASC

text: public

text: bovine metagenome

text: Shotgun reads from Faeces

text: bovine metagenome

text: bovine metagenome


text: TEAGASC

text: public

text: bovine metagenome

text: Shotgun reads from Thigh

text: bovine metagenome

text: bovine metagenome


text: TEAGASC

text: public

text: Negative control

text: Shotgun reads from Peat

text: metagenome

text: metagenome


text: public

tag: Namespace:FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

text: Klebsiella pneumoniae strain 18Y0158 isolated from German dried milk powder

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae strain 18Y0158


PROCRO

text: UNIVERSITY COLLEGE LONDON

text: public

text: PROCRO

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: adult

text: Prostheceraeus crozeri

text: Prostheceraeus crozeri

text: Genome of Prostheceraeus crozeri


text: Kidney

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GUANGXI UNIVERSITY

text: public

tag: Namespace:GUANGXI UNIVERSITY

text: goat

text: Capra hircus

text: Capra hircus

text: Metagenome-assembled genomes in digestive tract of Goat


text: Escherichia coli

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Escherichia coli

text: Acidiphilium rubrum

text: Acidiphilium rubrum


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Escherichia coli

text: Acidiphilium rubrum

text: Acidiphilium rubrum

characteristic: subject id


text: Durham University

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Durham University

characteristic: Submitter Id

text: Amelia Hainstock, Rosired Brownson-Smith, Amy Fenwick and Emily Parker

text: Van Mildert College Pond, Durham University, UK

characteristic: geographic location (region and locality)

text: Escherichia phage vB_Eco_Alma

text: Escherichia phage vB_Eco_Alma

text: Phage Alma


text: Streptococcus pneumoniae

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: MPI-EVA

text: public

text: Neandertal

text: library preparation negative control after capture for human MT fragments

characteristic: description

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


characteristic: ENA-FIRST-PUBLIC

text: MPI-EVA

text: public

text: Neandertal

text: library preparation negative control, shotgun data

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


characteristic: ENA-LAST-UPDATE

text: MPI-EVA

text: public

text: Neandertal

text: RSS1 Neandertal tooth, after capture for human MT fragments

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


characteristic: External Id

text: MPI-EVA

text: public

text: Neandertal

text: RSS1 Neandertal tooth, shotgun data

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


text: MPI-EVA

characteristic: INSDC center name

text: public

text: Neandertal

text: extraction negative control after capture for human MT fragments

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


text: MPI-EVA

text: public

text: Neandertal

text: extraction negative control, shotgun data

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


text: public

tag: Namespace:BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

text: lake water metagenome

text: Freshwater metagenome from Attersee Lake, Austria; 5m depth, 24oct2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

text: ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-11-12-2019-16:15:02:404-1223

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Attersee Lake, Austria; 150m depth, 24oct2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Austria

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Greifensee Lake, Austria; 5m depth, 7nov2019, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Austria

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

text: Freshwater metagenome from Greifensee Lake, Austria; 20m depth, 7nov2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: lake water metagenome

text: Freshwater metagenome from Lugano Lake, Italy; 5m depth, 5nov2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Italy

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Lugano Lake, Italy; 50m depth, 5nov2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Italy

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Maggiore Lake, Italy; 5m depth, 4nov2019, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Italy

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: lake water metagenome

text: Freshwater metagenome from Maggiore Lake, Italy; 300m depth, 4nov2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

text: Freshwater metagenome from Medard Lake, Czechia; 5m depth, 21oct2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Czech Republic

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Medard Lake, Czechia; 30m depth, 21oct2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Milada Lake, Czechia; 5m depth, 14oct2019, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

text: Freshwater metagenome from Milada Lake, Czechia; 15m depth, 14oct2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

text: Freshwater metagenome from Mondsee Lake, Austria; 5m depth, 23oct2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Austria

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Mondsee Lake, Austria; 40m depth, 23oct2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Austria

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Most Lake, Czechia; 5m depth, 1oct2019, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Czech Republic

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

text: Freshwater metagenome from Most Lake, Czechia; 60m depth, 1oct2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: lake water metagenome

text: Freshwater metagenome from Thun Lake, Switzerland; 5m depth, 11nov2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Switzerland

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

text: ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-11-12-2019-16:15:02:404-1223

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Thun Lake, Switzerland; 180m depth, 11nov2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Switzerland

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Traunsee Lake, Austria; 5m depth, 25oct2019, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Austria

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina Novaseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: lake water metagenome

text: Freshwater metagenome from Traunsee Lake, Austria; 150m depth, 25oct2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina Novaseq


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

text: Freshwater metagenome from Zurich Lake, Switzerland; 80m depth, 13nov2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Switzerland

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina Novaseq

characteristic: sequencing method


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Ikeda Lake, Japan; 5m depth, 17sep2015, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Japan

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina NextSeq

text: Freshwater metagenome from Ikeda Lake, Japan; 5m depth, 25nov2017


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Ikeda Lake, Japan; 50m depth, 17sep2015, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Japan

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina NextSeq

text: Freshwater metagenome from Ikeda Lake, Japan; 50m depth, 25nov2017

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

text: Freshwater metagenome from Ikeda Lake, Japan; 100m depth, 17sep2015, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Japan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina NextSeq

text: Freshwater metagenome from Ikeda Lake, Japan; 100m depth, 25nov2017


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

text: Freshwater metagenome from Ikeda Lake, Japan; 150m depth, 17sep2015, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Japan

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina NextSeq

characteristic: sequencing method

text: Freshwater metagenome from Ikeda Lake, Japan; 150m depth, 25nov2017


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: lake water metagenome

text: Freshwater metagenome from Ikeda Lake, Japan; 200m depth, 17sep2015, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Japan

text: metagenome

text: lake water metagenome

text: lake water metagenome

text: Illumina NextSeq

text: Freshwater metagenome from Ikeda Lake, Japan; 200m depth, 25nov2017


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: lake water metagenome

characteristic: common name

text: Freshwater metagenome from Maggiore Lake, Italy; 5m depth, 17oct2019, filtersize 0.22 um

characteristic: description

text: freshwater lake

text: fresh water

text: Italy

text: metagenome

text: lake water metagenome

characteristic: organism

text: lake water metagenome

text: Illumina NextSeq

text: Freshwater metagenome from Maggiore Lake, Italy; 5m depth, 17oct2016

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: lake water metagenome

text: Freshwater metagenome from Maggiore Lake, Italy; 100m depth, 17oct2019, filtersize 0.22 um

text: freshwater lake

characteristic: environment (biome)

text: fresh water

characteristic: environment (feature)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: lake water metagenome

text: ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-11-12-2019-16:15:02:404-1223

text: lake water metagenome

text: Illumina NextSeq

text: Freshwater metagenome from Maggiore Lake, Italy; 100m depth, 17oct2016


characteristic: ENA-CHECKLIST

text: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

characteristic: INSDC first public

text: public

text: lake water metagenome

text: Freshwater metagenome from Maggiore Lake, Italy; 300m depth, 17oct2019, filtersize 0.22 um

text: freshwater lake

text: fresh water

text: Italy

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: lake water metagenome

characteristic: project name

text: lake water metagenome

text: Illumina NextSeq

characteristic: sequencing method

text: Freshwater metagenome from Maggiore Lake, Italy; 300m depth, 17oct2016


E-MTAB-10409:Induced 12H

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10409:Induced 12H

tag: Namespace:Cell and Developmental Biology, University College London

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chicken

text: Protocols: Hensen's node was grafted into the area opaca of HH4 chick embryos and the epiblast in contact with the node was collected after 9 and 12 hours (9 and 12hrs induced); the contralateral area opaca from the same embryos was collected after 0, 9 and 12 hours (uninduced area opaca). Total RNA was extracted and the quality was assessed using the Agilent 2100 Bioanalyzer -all samples registered a RIN value between 9.0-10.0. Libraries were constructed using the Illumina® TruSeq mRNA library preparation kit.

characteristic: developmental stage

text: Gallus gallus

text: Gallus gallus

text: ectoderm

characteristic: organism part

text: node graft induced tissue

characteristic: sampling site

text: Gallus gallus

text: Induced 12H


E-MTAB-10409:Induced 9H

characteristic: External Id

text: Cell and Developmental Biology, University College London

characteristic: INSDC center name

text: public

text: E-MTAB-10409:Induced 9H

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: ectoderm

text: node graft induced tissue

text: Gallus gallus

text: Induced 9H

characteristic: title


E-MTAB-10409:Unindexed 9H

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-10409:Unindexed 9H

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: ectoderm

text: control

text: Gallus gallus

text: Unindexed 9H


E-MTAB-10409:Uninduced 0H

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10409:Uninduced 0H

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: ectoderm

text: control

text: Gallus gallus

text: Uninduced 0H


E-MTAB-10409:Uninduced 12H

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10409:Uninduced 12H

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: ectoderm

text: control

text: Gallus gallus

text: Uninduced 12H


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mixed

text: chicken

text: Protocols: Fertilised chicken eggs (Henry Stewart & Co.Ltd, Norfolk UK) were incubated at 38°C. The embryos were removed from the egg, staged, and pinned ventral side up on a resin plate in Tyrode’s saline. Embryos were dissected with a G-31 syringe needle. The endoderm and mesoderm were removed with a small volume of dispase (10mg/ml) before dissecting an ectodermal region spanning the neural plate and neural plate border (Figure 6A). Tissue samples were pooled from multiple embryos of the same stage prior to dissociation (HH4=~55 embryos; HH6=~45 embryos; HH8=10 embryos; HH9+=7 embryos). For cell dissociation, samples were incubated in FACSmax cell dissociation solution (Amsbio, T200100) with 30U/ml Papain (Sigma, P3125) at 37°C for 20 minutes. The tissue was pipetted 10 times every 5 minutes in order to facilitate mechanical dissociation. To stop enzymatic dissociation, an equal volume of resuspension solution (HBSS with 0.1% non-acetylated BSA (Invitrogen, 10743447), 1% HEPES, 1x non-essential amino acids (Thermo Fisher Scientific, 11140050) and 10M rock inhibitor (Stemcell Technologies, Y-27632)) was added before passing cells through a 20m filter (Miltenyi Biotech, 130-101-812). Samples were then centrifuged at 100rcf at 4°C for 5 minutes and resuspended in resuspension solution twice. Cells were then FAC sorted with 1ul 0.1mg/ml DAPI to remove dead cells and any remaining cell doublets. Immediately after FACS, samples were centrifuged and placed in 90% MeOH with 10% resuspension solution for storage. Given the limited number of cells collected from individual dissection rounds and to obtain the required cell concentration for 10x, multiple rounds of dissections were carried out over successive days. Immediately prior to loading on the 10x Chromium controller, samples were pooled by stage and underwent three rounds of centrifugation at 1500rcf at 4°C for 10 minutes followed by rehydration with DPBS with 0.5% non-acetylated BSA and 0.5U/l RNAse inhibitor (Roche 3335399001). N/A cDNA synthesis and library preparation were carried out using the Chromium Single-Cell 3′ Reagent v3 Kit (10× Genomics, Pleasanton, CA) according to the manufacturer’s protocol.

text: Gallus gallus

text: Gallus gallus

text: embryonic ectoderm

text: Gallus gallus

text: mixed

characteristic: sex


E-MTAB-10411:Sample 1

text: public

text: E-MTAB-10411:Sample 1

tag: Namespace:Postdoc, Institute of Molecular Health Sciences, ETH Zurich

text: 10 to 12

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The pancreata was collected from Kras-miR802 WT or Kras-miR802 KO mice RNA was isolated using the RNeasy mini kit (Qiagen) Libraries were generated by the Functional Genomics Center Zurich

text: adult

characteristic: developmental stage

text: pancreatic neoplasm

characteristic: disease

text: Ptf1aCre/+; LSL-KrasG12D/+; mir-802+/+

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: Mus musculus

text: Sample 1


E-MTAB-10411:Sample 2

characteristic: External Id

text: Postdoc, Institute of Molecular Health Sciences, ETH Zurich

characteristic: INSDC center name

text: public

text: E-MTAB-10411:Sample 2

text: 10 to 12

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: pancreatic neoplasm

text: Ptf1aCre/+; LSL-KrasG12D/+; mir-802+/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 2

characteristic: title


E-MTAB-10411:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10411:Sample 3

text: 10 to 12

text: ArrayExpress

text: house mouse

text: adult

text: pancreatic neoplasm

text: Ptf1aCre/+; LSL-KrasG12D/+; mir-802+/+

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 3


E-MTAB-10411:Sample 4

text: public

characteristic: SRA accession

text: E-MTAB-10411:Sample 4

characteristic: Submitter Id

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

text: pancreatic neoplasm

text: Ptf1aCre/+; LSL-KrasG12D/+; mir-802+/+

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 4


E-MTAB-10411:Sample 5

characteristic: External Id

text: public

text: E-MTAB-10411:Sample 5

text: 10 to 12

text: ArrayExpress

text: house mouse

text: adult

text: pancreatic neoplasm

characteristic: disease

text: Ptf1aCre/+; LSL-KrasG12D/+; mir-802fl/fl

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: organism part

text: Mus musculus

text: Sample 5


E-MTAB-10411:Sample 6

characteristic: INSDC center name

text: public

text: E-MTAB-10411:Sample 6

text: 10 to 12

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: pancreatic neoplasm

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 6

characteristic: title


E-MTAB-10411:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10411:Sample 7

text: 10 to 12

text: ArrayExpress

text: house mouse

text: adult

text: pancreatic neoplasm

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 7


E-MTAB-10411:Sample 8

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10411:Sample 8

characteristic: Submitter Id

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: pancreatic neoplasm

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: Sample 8


E-MTAB-10426:Induced 12H rep1

characteristic: External Id

text: public

text: E-MTAB-10426:Induced 12H rep1

text: ArrayExpress

text: chicken

text: Protocols: Hensen's node was grafted into the area opaca of HH4 chick embryos and the epiblast in contact with the node was collected after 9 and 12 hours (9 and 12hrs induced); the contralateral area opaca from the same embryos was collected after 0, 9 and 12 hours (uninduced area opaca). Once sufficient tissues were collected, they were thawed on ice and the nuclei isolated in 2mL of 1x Homogenisation Buffer Unstable (HBU) with a Dounce homogenizer on ice. HBU 1x contains 5mM CaCl2, 3mM Mg(Ac)2, 10mM Tris pH7.8, 320mM Sucrose, 0.1mM EDTA, 0.1% NP-40, 0.02mM PMSF and 0.3mM ß-mercaptoethanol, dissolved in H2O. Tissues were ground using 15 strokes with the loose pestle and 20 strokes with the tight pestle. Homogenate was then passed through a 30µm nylon mesh filter into a fresh 2mL low binding microfuge tube. Next, nuclei were gently pelleted by centrifugation for 10mins/500g/4°C and the supernatant removed. The pellet was resuspended in 200µL of 1xHBU by gentle pipetting. Nuclei were counted by taking 6x10µL homogenate samples, staining them with DAPI and viewing on a haemocytometer. After counting, nuclei were washed with 1mL of ATAC-RSB+0.1% Tween-20 and spun for 10mins/500g/4°C to pellet. The supernatant was carefully removed and the nuclei pellet was resuspended in 50µL of transposition mix by pipetting. The volume of Tn5 transposase (Illumina, 20034197) added to each reaction was scaled to 0.1µL per 1000 nuclei, so that ATAC samples with different numbers of nuclei were treated equivalently. Libraries were prepared exactly as described in (Corces et al., 2017), using the adapter sequences listed in (Buenrostro et al., 2013).

characteristic: developmental stage

text: Gallus gallus

text: Gallus gallus

characteristic: replicate

text: node graft induced area opaca

characteristic: sampling site

text: Gallus gallus

text: Induced 12H rep1


E-MTAB-10426:Induced 12H rep2

characteristic: INSDC center name

text: public

text: E-MTAB-10426:Induced 12H rep2

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: Gallus gallus

text: Gallus gallus

text: node graft induced area opaca

text: Gallus gallus

text: Induced 12H rep2


E-MTAB-10426:Induced 5H rep1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-10426:Induced 5H rep1

text: ArrayExpress

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: node graft induced area opaca

text: Gallus gallus

text: Induced 5H rep1

characteristic: title


E-MTAB-10426:Induced 5H rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-10426:Induced 5H rep2

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: node graft induced area opaca

text: Gallus gallus

text: Induced 5H rep2


E-MTAB-10426:Induced 9H rep1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10426:Induced 9H rep1

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: node graft induced area opaca

text: Gallus gallus

text: Induced 9H rep1


E-MTAB-10426:Induced 9H rep2

text: public

text: E-MTAB-10426:Induced 9H rep2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chicken

text: Gallus gallus

text: Gallus gallus

text: node graft induced area opaca

text: Gallus gallus

text: Induced 9H rep2


E-MTAB-10426:Uninduced 0H rep1

characteristic: External Id

text: public

text: E-MTAB-10426:Uninduced 0H rep1

text: ArrayExpress

text: chicken

characteristic: developmental stage

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 0H rep1


E-MTAB-10426:Uninduced 0H rep2

text: public

text: E-MTAB-10426:Uninduced 0H rep2

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

characteristic: replicate

text: contralateral uninduced area opaca

characteristic: sampling site

text: Gallus gallus

text: Uninduced 0H rep2


E-MTAB-10426:Uninduced 12H rep1

characteristic: INSDC center name

text: public

text: E-MTAB-10426:Uninduced 12H rep1

text: ArrayExpress

text: chicken

characteristic: common name

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 12H rep1


E-MTAB-10426:Uninduced 12H rep2

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-10426:Uninduced 12H rep2

text: ArrayExpress

text: chicken

characteristic: description

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 12H rep2


E-MTAB-10426:Uninduced 5H rep1

text: public

text: E-MTAB-10426:Uninduced 5H rep1

text: ArrayExpress

text: chicken

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 5H rep1

characteristic: title


E-MTAB-10426:Uninduced 5H rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10426:Uninduced 5H rep2

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 5H rep2


E-MTAB-10426:Uninduced 9H rep1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10426:Uninduced 9H rep1

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 9H rep1


E-MTAB-10426:Uninduced 9H rep2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10426:Uninduced 9H rep2

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus

text: Uninduced 9H rep2


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chicken

text: Protocols: In brief, tissues were dissected in ice cold 1x PBS and transferred to low binding PCR tubes containing 50-100µL of 1x Protease Inhibitor Cocktail in 1xPBS (cOmplete mini EDTA-free; Roche) on ice. Where necessary, 0.12% trypsin or 1XPBS + 200mM EDTA was used to aid dissection. Treated tissues were rinsed with PBS to remove residual trypsin. Tissues were collected in batches every 30mins before tubes were spun at 100G/3min/4°C to gently pellet the tissue. Tubes were snap frozen in liquid nitrogen before storage at -80°C for up to 6 months. For pre-streak EGK XII-XIII embryos, the hypoblast was removed and central epiblast was collected from 6 embryos in triplicate. After removal of the underlying mesoderm and endoderm, the neural plate at HH6-7 was harvested from 20 embryos in triplicate. For 0, 5, 9 and 12h node induced and contralateral uninduced area opaca, 14-30 pieces of tissue were collected in triplicate. A further 60 pieces of 9h and 12h uninduced tissue were collected and processed separately after it was discovered that 30 pieces of uninduced tissue at these time points did not generate enough material for ChIP. Samples were spun at 3500 RPM and 4°C for 3mins and the supernatant was divided into 3 separate 0.5mL low binding PCR tubes: 200µL each into H3K27ac and H3K27me3 tubes and the rest into the input tube (≈60µL). To the experimental tubes, 2µL of H3K27ac (Active Motif 39133, lot# 31814008) or H3K27me3 (Active Motif 39155, lot# 31814017) antibody was added, and these were incubated overnight at 4°C. To the input, 80µL of low EDTA TE buffer was added and stored overnight at 4°C. The following day, ChIP reaction tubes were spun briefly at 4°C to collect the solution. “IP” reaction beads were removed from the rotator and mixed to an even suspension by pipetting with a wide bore tip. Keeping the beads well mixed, 50µL of bead slurry was added to each immunoprecipitation and the tubes returned to the 4°C rotator for 3-4h to pull down ChIPed chromatin. Next, samples were washed according to Section G of the Active Motif Low Cell ChIP-seq manual and eluted with 100µL of Elution Buffer AM4. Libraries were prepared using the Next Gen DNA Library kit (Active Motif 53216) and Next Gen Indexing kit (Active Motif 53264) but using ProNex® size-selective beads (Promega) to enrich for mono and di-nucleosomes (≈200-500bp). DNAs were size-selected using 1.2x/0.4x ratios of ProNex beads to purify ≈200-500bp fragments.

text: Gallus gallus

text: Gallus gallus

text: node graft induced area opaca

text: Gallus gallus


characteristic: External Id

text: public

text: ArrayExpress

text: chicken

characteristic: developmental stage

text: Gallus gallus

text: Gallus gallus

text: neural plate

text: Gallus gallus


text: public

text: ArrayExpress

text: chicken

text: pre-streak EGK XII-XIII

text: Gallus gallus

text: Gallus gallus

characteristic: replicate

text: central epiblast

characteristic: sampling site

text: Gallus gallus


characteristic: INSDC center name

text: public

text: ArrayExpress

text: chicken

characteristic: common name

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: chicken

characteristic: description

text: Gallus gallus

text: Gallus gallus

text: contralateral uninduced area opaca

text: Gallus gallus


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: subject id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:PhD student, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich

characteristic: age

text: ArrayExpress

text: endothelial cell

text: house mouse

text: Protocols: Lymph node LECs and medullary sinus macrophages were isolated from inguinal LNs of C57Bl/6N wild type mice. Cells were sorted into 384-well plates containing lysis buffer and RNA was extracted. Libraries were prepared using a miniaturised version of the Smart-seq2 protocol (Picelli et al., 2014).

text: adult

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inguinal lymph node

characteristic: organism part

text: lymph node

text: Mus musculus

text: female

characteristic: sex

text: melanoma cell-derived extracellular vesicles

characteristic: stimulus

characteristic: strain


characteristic: External Id

text: PhD student, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inguinal lymph node

text: lymph node

characteristic: sampling site

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: ArrayExpress

text: endothelial cell

text: house mouse

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inguinal lymph node

text: lymph node

text: Mus musculus

text: female

characteristic: title


characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

text: lymph node macrophage

text: house mouse

text: adult

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inguinal lymph node

characteristic: organism part

text: lymph node medullary sinus

text: Mus musculus

text: female

characteristic: sex

characteristic: stimulus

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lymph node macrophage

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inguinal lymph node

text: lymph node medullary sinus

text: Mus musculus

text: female


text: Pseudomonas aeruginosa PAO1

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

characteristic: subject id


text: Pseudomonas aeruginosa PAO1

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

characteristic: organism

text: Pseudomonas aeruginosa PAO1

characteristic: title


characteristic: External Id

text: THE UNIVERSITY OF AUCKLAND

text: public

tag: Namespace:THE UNIVERSITY OF AUCKLAND

text: human

text: Homo sapiens

text: Homo sapiens

text: missed miscarriage 1- micro particles


text: THE UNIVERSITY OF AUCKLAND

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: missed miscarriage 2-micro particles


text: THE UNIVERSITY OF AUCKLAND

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens

text: missed miscarriage 3-micro particles


text: THE UNIVERSITY OF AUCKLAND

text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens

text: normal pregnancy 1-micro particles


text: THE UNIVERSITY OF AUCKLAND

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: normal pregnancy 2- micro particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: normal pregnancy 3- micro particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: missed miscarriage 1-nano particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: missed miscarriage 2-nano particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: missed miscarriage 3-nano particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: normal pregnancy 1- nano particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: normal pregnancy 2- nano particles


text: THE UNIVERSITY OF AUCKLAND

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: normal pregnancy 3- nano particles


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

tag: Namespace:INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: C. elegans TENT-5 (PQN44, catalytic mutant) tethering experiment in HEK293 cells, direct RNA sequencing, biological replicate 1 technical sequencing replicate 1/ S. cerevisiae WT W303 30°C, biological replicate 2, total RNA


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: ReCoDID COVID-19 pilot study

characteristic: project name

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: sample derived from

text: Dutch COVID-19 response sample sequencing

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sample collected from the biomass adhered to polyurethane foam used in a reactor fed with synthetic medium mimicking nitrified sewage pre-treated anaerobically and operated without temperature control or previous medium sterilization, for evaluate methanotrophic denitrification.

text: wastewater treatment plant

characteristic: environment (biome)

text: anoxic water

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: environmental samples

characteristic: organism

text: Anaerobic post-treatment with methanotrophic denitrification in tropical areas

text: up-flow fixed structured bed reactor (Up-FSBR)

characteristic: reactor type

text: environmental samples

text: MiSeq Ilumina 2x250pb

characteristic: sequencing method

text: Unique Sample

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: Streptococcus agalactiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Streptococcus agalactiae

characteristic: common name

text: Streptococcus agalactiae

text: Streptococcus agalactiae


text: Streptococcus agalactiae

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae


name: Eukaryotes associated with Laminaria digitata (NO)

text: NATURAL HISTORY MUSEUM, LONDON

text: public

tag: Namespace:NATURAL HISTORY MUSEUM, LONDON

text: Microeukaryotes and epi-endophytes associated with large brown algae (Phaeophyceae)

characteristic: description

text: Yes

text: Norway

characteristic: geographic location (country and/or sea)

text: Laminaria digitata

characteristic: host scientific name

text: Laminaria digitata thallus tissue

text: 59deg40'26.9''N, 10deg35'13.199''E

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Eukaryotes associated with brown algae (Phaeophyceae)


name: Eukaryotes associated with Laminaria digitata (UK)

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: United Kingdom

text: Laminaria digitata

text: Laminaria digitata thallus tissue

text: 50deg36'18''N, 2deg26'58''W

text: uncultured eukaryote

text: uncultured eukaryote

characteristic: title


name: Eukaryotes associated with Fucus vesiculosus (NO, 2013)

characteristic: ENA-CHECKLIST

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: Norway

text: Fucus vesiculosus

text: Fucus vesiculosus thallus tissue

text: 59deg40'26.9''N, 10deg35'13.199''E

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Fucus vesiculosus (NO)

characteristic: ENA-FIRST-PUBLIC

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: Norway

text: Fucus vesiculosus

text: Fucus vesiculosus thallus tissue

text: 59deg40'26.9''N, 10deg35'13.199''E

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Fucus vesiculosus (UK)

characteristic: ENA-LAST-UPDATE

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: United Kingdom

text: Fucus vesiculosus

text: Fucus vesiculosus thallus tissue

text: 50deg36'18''N, 2deg26'58''W

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Ascophyllum nodosum (NO)

characteristic: External Id

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: Norway

text: Ascophyllum nodosum

text: Ascophyllum nodosum thallus tissue

text: 59deg40'26.9''N, 10deg35'13.199''E

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Fucus serratus (UK)

text: NATURAL HISTORY MUSEUM, LONDON

characteristic: INSDC center name

text: public

text: Yes

text: United Kingdom

text: Fucus serratus

text: Fucus serratus thallus tissue

text: 50deg36'18''N, 2deg26'58''W

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Himanthalia elongata (UK)

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: United Kingdom

text: Himanthalia elongata

text: Himanthalia elongata tissue

text: 50deg36'18''N, 2deg26'58''W

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Saccorhiza polyschides (UK)

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: United Kingdom

text: Saccorhiza polyschides

text: Saccorhiza polyschides thallus tissue

text: 50deg36'18''N, 2deg26'58''W

text: uncultured eukaryote

text: uncultured eukaryote


name: Eukaryotes associated with Saccharina latissima (NO)

text: NATURAL HISTORY MUSEUM, LONDON

text: public

text: Yes

text: Norway

text: Saccharina latissima

text: Saccharina latissima thallus tissue

text: 59deg40'26.9''N, 10deg35'13.199''E

text: uncultured eukaryote

text: uncultured eukaryote


text: public

tag: Namespace:Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: collection date

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: gut metagenome

characteristic: project name

text: gut metagenome

text: MiSeq

characteristic: sequencing method

text: Corpse


tag: attribute

text: Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: soil

text: soil

text: soil

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: MiSeq

text: Corpse


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: soil

text: soil

text: soil

text: China

text: host-associated

text: mimarks-survey

text: gut metagenome

text: gut metagenome

text: MiSeq

text: Control

characteristic: title


text: VETERINARY Faculty

text: public

tag: Namespace:VETERINARY Faculty

text: dog

characteristic: common name

text: canis lupus familiaris

characteristic: host scientific name

text: eukaryote

text: Canis lupus familiaris

text: Canis lupus familiaris

text: male

characteristic: sex


characteristic: INSDC first public

text: public

tag: Namespace:Computational Biology and Microbial Ecology

text: Andean forest

characteristic: environment (biome)

text: prairies

characteristic: environment (feature)

text: Bee gut

characteristic: environment (material)

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: gut metagenome

text: Characterization of gut microbiota of Neotropical Bees

characteristic: project name

text: gut metagenome

characteristic: sequencing method

text: Bumblebee gut sample 2019


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Computational Biology and Microbial Ecology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Andean forest

text: prairies

text: Bee gut

text: Colombia

characteristic: geographic location (country and/or sea)

text: host-associated

text: gut metagenome

characteristic: organism

text: gut metagenome

text: Bumblebee gut sample 2019


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Institute of Molecular Biology and Biotechnology of the Foundation for Research and Technology Hellas

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_sRNA_Omega protocol

characteristic: title


text: Institute of Molecular Biology and Biotechnology of the Foundation for Research and Technology Hellas

text: public

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1


text: public

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum trcornutum_sRNA_NEB protocol


Pt WT-1_mRNA

text: public

text: Pt WT-1_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt WT-2_mRNA

text: public

text: Pt WT-2_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt WT-3_mRNA

text: public

text: Pt WT-3_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m4-1_mRNA

text: public

text: Pt m4-1_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m4-2_mRNA

text: public

text: Pt m4-2_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m4-3_mRNA

text: public

text: Pt m4-3_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m8-1_mRNA

text: public

text: Pt m8-1_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m8-2_mRNA

text: public

text: Pt m8-2_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m8-3_mRNA

text: public

text: Pt m8-3_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m9-1_mRNA

text: public

text: Pt m9-1_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m9-2_mRNA

text: public

text: Pt m9-2_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


Pt m9-3_mRNA

text: public

text: Pt m9-3_mRNA

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum CCAP 1055/1

text: Phaeodactylum tricornutum_mRNA


text: KOREA UNIVERSITY

text: public

tag: Namespace:KOREA UNIVERSITY

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: human gut

characteristic: environment (material)

text: South Korea

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: eukaryote

text: Homo sapiens

text: Homo sapiens

text: Hiseq 2500


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:WDRC KAUST

text: exDNA of influent sampled in January 2019

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: Metagenomic investigation of antibiotic resistance genes and virulence factor genes in extracellular DNA across wastewater treatment processes

characteristic: project name

text: wastewater metagenome

text: Illumina HiSeq4000 paired end sequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of influent sampled in February 2019

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

text: public

text: exDNA of influent sampled in March 2019

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge


text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: exDNA of influent sampled in April 2019

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of influent sampled in May 2019

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: exDNA of influent sampled in June 2019

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: exDNA of influent sampled in July 2019

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of influent sampled in August 2018

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: exDNA of influent sampled in September 2018

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: exDNA of influent sampled in October 2018

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of influent sampled in November 2018

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: exDNA of influent sampled in December 2018

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: exDNA of MBR effluent sampled in January 2019

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of MBR effluent sampled in March 2019

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: exDNA of MBR effluent sampled in May 2019

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: exDNA of MBR effluent sampled in June 2019

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of MBR effluent sampled in July 2019

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: exDNA of MBR effluent sampled in September 2018

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: exDNA of MBR effluent sampled in October 2018

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

characteristic: common name

text: exDNA of MBR effluent sampled in November 2018

characteristic: description

text: waste treatment plant

text: wastewater treatment plant

text: water

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: exDNA of MBR effluent sampled in December 2018

text: waste treatment plant

characteristic: environment (biome)

text: wastewater treatment plant

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Saudi Arabia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: wastewater/sludge