characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2021-11-08

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2022-03-21

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-256669/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-20

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-03-28

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-06-08

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2022-01-17

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-01-03

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-10

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-114543/2021

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2021-12-27

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2022-01-31

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=3,last_infection_date=2022-07-18

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Clinical Microbiology, Odense University Hospital, Odense, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2022-02-21

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-28896/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-393423/2022

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Portugal

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: not provided

text: not provided

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Anthony Smith, NICD

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Blood culture

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Rectal swab

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Isangi


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Typhi


E-MTAB-12091:Sample 12

characteristic: INSDC first public

text: public

text: E-MTAB-12091:Sample 12

tag: Namespace:Ghent University Department of Pharmaceutical Sciences Laboratory of Pharmaceutical Microbiology

text: ArrayExpress

text: Protocols: Evolved bacterial lineages were grown in liquid BHI medium over night, pelleted, and immediately submitted to DNA extraction. Genomic DNA was extracted from 2 mL planktonic cultures. The pellet was resuspended in TE buffer (10 mM Tris-HCl pH 8 + 1 mM EDTA pH 8). 100 µL cell suspension was added to 500 µL lysis buffer (50 mM Tris-HCl pH 8, 70 mM EDTA pH 8, 1% sodium dodecyl sulfate) with 0.5 µg/mL pronase (Roche, Germany) containing acid-washed glass beads (Sigma-Aldrich, USA). After vortexing, the tubes were incubated at 37°C for 1 hour. 200 µL saturated ammonium acetate was added, vortexed, then 600 µL chloroform was added, and vortexed. After centrifuging for 5 minutes 400 µL of the top aqueous phase was transferred to a new tube containing 1 mL 100% ethanol. This was mixed by inversion and centrifuged for 5 minutes. The pellet was washed with 70% ethanol, and air-dried. The DNA was dissolved in low-EDTA-TE buffer (10 mM Tris-HCl pH 8 + 0.1 mM EDTA pH 8 + 0.5 µg/mL) containing RNase A (Qiagen, Germany), incubated at 37°C for 1 hour. NEBNext Ultra II library prep with 460-1000 ng input, according to the protocol with size selection using ampure XP beads after adapter ligation. PCR-free.

text: wild type genotype

characteristic: genotype

text: biofilm liquid BHI medium from beads

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa

text: Sample 12


E-MTAB-12091:Sample 13

text: Ghent University Department of Pharmaceutical Sciences Laboratory of Pharmaceutical Microbiology

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12091:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 13


E-MTAB-12091:Sample 14

text: public

text: E-MTAB-12091:Sample 14

text: ArrayExpress

characteristic: description

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 14


E-MTAB-12091:Sample 15

text: public

text: E-MTAB-12091:Sample 15

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

characteristic: strain

text: Sample 15

characteristic: title


E-MTAB-12091:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12091:Sample 16

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 16


E-MTAB-12091:Sample 27

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12091:Sample 27

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 27


E-MTAB-12091:Sample 28

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12091:Sample 28

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 28


E-MTAB-12091:Sample 29

characteristic: INSDC first public

text: public

text: E-MTAB-12091:Sample 29

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 29


E-MTAB-12091:Sample 30

text: public

text: E-MTAB-12091:Sample 30

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa

text: Sample 30


E-MTAB-12091:Sample 31

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12091:Sample 31

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 31


E-MTAB-12091:Sample 10

text: public

text: E-MTAB-12091:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 10


E-MTAB-12091:Sample 11

text: public

text: E-MTAB-12091:Sample 11

text: ArrayExpress

characteristic: description

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 11


E-MTAB-12091:Sample 7

text: public

text: E-MTAB-12091:Sample 7

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

characteristic: strain

text: Sample 7

characteristic: title


E-MTAB-12091:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12091:Sample 8

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 8


E-MTAB-12091:Sample 9

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12091:Sample 9

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 9


E-MTAB-12091:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12091:Sample 22

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 22


E-MTAB-12091:Sample 23

characteristic: INSDC first public

text: public

text: E-MTAB-12091:Sample 23

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 23


E-MTAB-12091:Sample 24

text: public

text: E-MTAB-12091:Sample 24

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa

text: Sample 24


E-MTAB-12091:Sample 25

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12091:Sample 25

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 25


E-MTAB-12091:Sample 26

text: public

text: E-MTAB-12091:Sample 26

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 26


E-MTAB-12091:Sample 2

text: public

text: E-MTAB-12091:Sample 2

text: ArrayExpress

characteristic: description

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 2


E-MTAB-12091:Sample 3

text: public

text: E-MTAB-12091:Sample 3

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

characteristic: strain

text: Sample 3

characteristic: title


E-MTAB-12091:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12091:Sample 4

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 4


E-MTAB-12091:Sample 5

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12091:Sample 5

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 5


E-MTAB-12091:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12091:Sample 6

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 6


E-MTAB-12091:Sample 42

characteristic: INSDC first public

text: public

text: E-MTAB-12091:Sample 42

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 42


E-MTAB-12091:Sample 43

text: public

text: E-MTAB-12091:Sample 43

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa

text: Sample 43


E-MTAB-12091:Sample 44

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12091:Sample 44

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 44


E-MTAB-12091:Sample 45

text: public

text: E-MTAB-12091:Sample 45

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 45


E-MTAB-12091:Sample 46

text: public

text: E-MTAB-12091:Sample 46

text: ArrayExpress

characteristic: description

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 46


E-MTAB-12091:Sample 17

text: public

text: E-MTAB-12091:Sample 17

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

characteristic: strain

text: Sample 17

characteristic: title


E-MTAB-12091:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12091:Sample 18

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 18


E-MTAB-12091:Sample 19

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12091:Sample 19

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 19


E-MTAB-12091:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12091:Sample 20

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 20


E-MTAB-12091:Sample 21

characteristic: INSDC first public

text: public

text: E-MTAB-12091:Sample 21

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 21


E-MTAB-12091:Sample 32

text: public

text: E-MTAB-12091:Sample 32

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa

text: Sample 32


E-MTAB-12091:Sample 33

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12091:Sample 33

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 33


E-MTAB-12091:Sample 34

text: public

text: E-MTAB-12091:Sample 34

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 34


E-MTAB-12091:Sample 35

text: public

text: E-MTAB-12091:Sample 35

text: ArrayExpress

characteristic: description

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 35


E-MTAB-12091:Sample 36

text: public

text: E-MTAB-12091:Sample 36

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

characteristic: strain

text: Sample 36

characteristic: title


E-MTAB-12091:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12091:Sample 1

text: ArrayExpress

text: wild type genotype

text: planktonic

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 1


E-MTAB-12091:Sample 47

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12091:Sample 47

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 47


E-MTAB-12091:Sample 48

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12091:Sample 48

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 48


E-MTAB-12091:Sample 49

characteristic: INSDC first public

text: public

text: E-MTAB-12091:Sample 49

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 49


E-MTAB-12091:Sample 50

text: public

text: E-MTAB-12091:Sample 50

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

characteristic: organism part

text: Pseudomonas aeruginosa

text: Sample 50


E-MTAB-12091:Sample 51

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12091:Sample 51

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 51


E-MTAB-12091:Sample 37

text: public

text: E-MTAB-12091:Sample 37

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 37


E-MTAB-12091:Sample 38

text: public

text: E-MTAB-12091:Sample 38

text: ArrayExpress

characteristic: description

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 38


E-MTAB-12091:Sample 39

text: public

text: E-MTAB-12091:Sample 39

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

characteristic: strain

text: Sample 39

characteristic: title


E-MTAB-12091:Sample 40

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12091:Sample 40

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 40


E-MTAB-12091:Sample 41

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12091:Sample 41

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium from beads

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: whole organism

text: Pseudomonas aeruginosa

text: Sample 41


E-MTAB-12092:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12092:Sample 10

text: ArrayExpress

text: wild type genotype

text: biofilm liquid BHI medium grown on beads

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 10


E-MTAB-12092:Sample 11

characteristic: INSDC first public

text: public

text: E-MTAB-12092:Sample 11

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 11


E-MTAB-12092:Sample 12

text: public

text: E-MTAB-12092:Sample 12

text: ArrayExpress

text: wild type genotype

characteristic: growth condition

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

characteristic: organism part

text: Burkholderia cenocepacia

text: Sample 12


E-MTAB-12092:Sample 13

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12092:Sample 13

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 13


E-MTAB-12092:Sample 41

text: public

text: E-MTAB-12092:Sample 41

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 41


E-MTAB-12092:Sample 42

text: public

text: E-MTAB-12092:Sample 42

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 42


E-MTAB-12092:Sample 43

text: public

text: E-MTAB-12092:Sample 43

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

characteristic: strain

text: Sample 43

characteristic: title


E-MTAB-12092:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12092:Sample 44

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 44


E-MTAB-12092:Sample 6

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12092:Sample 6

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 6


E-MTAB-12092:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12092:Sample 7

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 7


E-MTAB-12092:Sample 8

characteristic: INSDC first public

text: public

text: E-MTAB-12092:Sample 8

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 8


E-MTAB-12092:Sample 9

text: public

text: E-MTAB-12092:Sample 9

text: ArrayExpress

text: wild type genotype

characteristic: growth condition

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

characteristic: organism part

text: Burkholderia cenocepacia

text: Sample 9


E-MTAB-12092:Sample 37

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12092:Sample 37

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 37


E-MTAB-12092:Sample 38

text: public

text: E-MTAB-12092:Sample 38

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 38


E-MTAB-12092:Sample 39

text: public

text: E-MTAB-12092:Sample 39

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 39


E-MTAB-12092:Sample 40

text: public

text: E-MTAB-12092:Sample 40

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

characteristic: strain

text: Sample 40

characteristic: title


E-MTAB-12092:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12092:Sample 2

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 2


E-MTAB-12092:Sample 3

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12092:Sample 3

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 3


E-MTAB-12092:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12092:Sample 4

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 4


E-MTAB-12092:Sample 5

characteristic: INSDC first public

text: public

text: E-MTAB-12092:Sample 5

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 5


E-MTAB-12092:Sample 24

text: public

text: E-MTAB-12092:Sample 24

text: ArrayExpress

text: wild type genotype

characteristic: growth condition

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

characteristic: organism part

text: Burkholderia cenocepacia

text: Sample 24


E-MTAB-12092:Sample 25

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12092:Sample 25

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 25


E-MTAB-12092:Sample 26

text: public

text: E-MTAB-12092:Sample 26

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 26


E-MTAB-12092:Sample 27

text: public

text: E-MTAB-12092:Sample 27

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 27


E-MTAB-12092:Sample 14

text: public

text: E-MTAB-12092:Sample 14

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

characteristic: strain

text: Sample 14

characteristic: title


E-MTAB-12092:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12092:Sample 15

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 15


E-MTAB-12092:Sample 16

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12092:Sample 16

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 16


E-MTAB-12092:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12092:Sample 17

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 17


E-MTAB-12092:Sample 33

characteristic: INSDC first public

text: public

text: E-MTAB-12092:Sample 33

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 33


E-MTAB-12092:Sample 34

text: public

text: E-MTAB-12092:Sample 34

text: ArrayExpress

text: wild type genotype

characteristic: growth condition

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

characteristic: organism part

text: Burkholderia cenocepacia

text: Sample 34


E-MTAB-12092:Sample 35

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12092:Sample 35

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 35


E-MTAB-12092:Sample 36

text: public

text: E-MTAB-12092:Sample 36

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 36


E-MTAB-12092:Sample 1

text: public

text: E-MTAB-12092:Sample 1

text: ArrayExpress

characteristic: description

text: wild type genotype

text: planktonic

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 1


E-MTAB-12092:Sample 28

text: public

text: E-MTAB-12092:Sample 28

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

characteristic: strain

text: Sample 28

characteristic: title


E-MTAB-12092:Sample 29

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12092:Sample 29

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 29


E-MTAB-12092:Sample 30

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12092:Sample 30

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 30


E-MTAB-12092:Sample 31

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12092:Sample 31

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 31


E-MTAB-12092:Sample 32

characteristic: INSDC first public

text: public

text: E-MTAB-12092:Sample 32

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 32


E-MTAB-12092:Sample 18

text: public

text: E-MTAB-12092:Sample 18

text: ArrayExpress

text: wild type genotype

characteristic: growth condition

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

characteristic: organism part

text: Burkholderia cenocepacia

text: Sample 18


E-MTAB-12092:Sample 19

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12092:Sample 19

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 19


E-MTAB-12092:Sample 20

text: public

text: E-MTAB-12092:Sample 20

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 20


E-MTAB-12092:Sample 21

text: public

text: E-MTAB-12092:Sample 21

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Burkholderia cenocepacia

characteristic: organism

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 21


E-MTAB-12092:Sample 22

text: public

text: E-MTAB-12092:Sample 22

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

characteristic: strain

text: Sample 22

characteristic: title


E-MTAB-12092:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12092:Sample 23

text: ArrayExpress

text: wild type genotype

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: whole organism

text: Burkholderia cenocepacia

text: Sample 23


text: Centre de recherche CHU Sainte-Justine

characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:Centre de recherche CHU Sainte-Justine

text: human

characteristic: common name

text: RNA extracted from Patient's 1 PSC blood cells

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre de recherche CHU Sainte-Justine

characteristic: INSDC first public

text: public

text: human

text: RNA extracted from Patient's 2 PSC blood cells

text: Homo sapiens

text: Homo sapiens


text: Centre de recherche CHU Sainte-Justine

text: public

text: human

text: RNA extracted from Patient's 3 PSC blood cells

text: Homo sapiens

text: Homo sapiens


text: Centre de recherche CHU Sainte-Justine

text: public

text: human

text: Control ESC cell line sample

text: Homo sapiens

text: Homo sapiens


iPSC

text: Centre de recherche CHU Sainte-Justine

text: public

text: iPSC

text: human

text: Control iPSC cells

text: Homo sapiens

text: Homo sapiens

text: iPSC


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377472 of study SRP275700.

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Clostridium botulinum

text: Extracellular vesicles (EVs) in bovine milk alter bacterial communities in the murine cecum, thereby implicating dietary EVs in cross-kingdom communication. Here we use metagenomics analysis to demonstrate that milk EVs contribute to the speciation of gut bacteria through the selection of genetic variations.

characteristic: project name

characteristic: sample derived from

text: Clostridium botulinum

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377472_bin.10_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377472_bin.12_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Porphyromonadaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377472_bin.13_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Pelosinus sp.

characteristic: organism

text: uncultured Pelosinus sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Sporomusaceae;g__Pelosinus;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377472_bin.15_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Paenibacillus barengoltzii

characteristic: project name

characteristic: sample derived from

text: Paenibacillus barengoltzii

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus barengoltzii

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377472_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: uncultured Clostridium sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377472_bin.6_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Desulfotomaculum sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Desulfotomaculum sp.

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae;g__Desulfotomaculum;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377472_bin.7_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377473 of study SRP275700.

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377473_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: Extracellular vesicles (EVs) in bovine milk alter bacterial communities in the murine cecum, thereby implicating dietary EVs in cross-kingdom communication. Here we use metagenomics analysis to demonstrate that milk EVs contribute to the speciation of gut bacteria through the selection of genetic variations.

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377473_bin.10_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Oscillibacter sp.

characteristic: organism

text: uncultured Oscillibacter sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Oscillospiraceae;g__Oscillibacter;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377473_bin.11_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Mollicutes bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Mollicutes bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377473_bin.17_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Brevibacillus sp.

characteristic: organism

text: uncultured Brevibacillus sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Brevibacillus;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377473_bin.19_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377473_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Lachnoclostridium sp.

characteristic: organism

text: uncultured Lachnoclostridium sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Lachnoclostridium;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377473_bin.5_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Aneurinibacillus aneurinilyticus

characteristic: project name

characteristic: sample derived from

text: Aneurinibacillus aneurinilyticus

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Aneurinibacillus;s__Aneurinibacillus aneurinilyticus

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377473_bin.6_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377473 of study SRP275700.

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: Lysinibacillus boronitolerans

characteristic: organism

text: Lysinibacillus boronitolerans

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Lysinibacillus;s__Lysinibacillus boronitolerans

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377473_bin.7_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: Extracellular vesicles (EVs) in bovine milk alter bacterial communities in the murine cecum, thereby implicating dietary EVs in cross-kingdom communication. Here we use metagenomics analysis to demonstrate that milk EVs contribute to the speciation of gut bacteria through the selection of genetic variations.

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: NextSeq 500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377473_bin.8_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377474 of study SRP275700.

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Herbinix sp.

characteristic: organism

text: uncultured Herbinix sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Herbinix;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377474_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: [Clostridium] cocleatum

characteristic: project name

characteristic: sample derived from

text: [Clostridium] cocleatum

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelatoclostridium;s__[Clostridium] cocleatum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377474_bin.12_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: Lactobacillus johnsonii

characteristic: organism

text: Lactobacillus johnsonii

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377474_bin.15_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377474_bin.17_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377474_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377474_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: Extracellular vesicles (EVs) in bovine milk alter bacterial communities in the murine cecum, thereby implicating dietary EVs in cross-kingdom communication. Here we use metagenomics analysis to demonstrate that milk EVs contribute to the speciation of gut bacteria through the selection of genetic variations.

text: uncultured Muribaculaceae bacterium

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377474_bin.6_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377474 of study SRP275700.

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Anaerocolumna aminovalerica

characteristic: project name

characteristic: sample derived from

text: Anaerocolumna aminovalerica

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Anaerocolumna;s__Anaerocolumna aminovalerica

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377474_bin.7_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12377475 of study SRP275700.

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Oscillibacter sp.

characteristic: organism

text: uncultured Oscillibacter sp.

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Oscillospiraceae;g__Oscillibacter;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377475_bin.10_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Porphyromonadaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377475_bin.13_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: uncultured Oscillibacter sp.

characteristic: organism

text: uncultured Oscillibacter sp.

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377475_bin.16_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: Mouse digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: cecum

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: Digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: NextSeq 500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12377475_bin.17_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: Mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: cecum

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: Digestive tube

text: mouse gut metagenome

text: Clostridium scatologenes

characteristic: organism

text: Clostridium scatologenes

text: NextSeq 500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__Clostridium scatologenes

text: multi-marker approach

text: Metagenome-assembled genome: SRR12377475_bin.18_metawrap_v1.3_MAG

characteristic: title