characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38677199/2022


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-HUG-38540443/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/un-HUG-38666718/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-SNRCI-HUG-38641793/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

text: Switzerland

text: LU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-DIA-011455330001/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38653836/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-DIA-011455329901/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Medisupport

characteristic: INSDC first public

text: public

text: SIB

text: Dianalabs SA, Rue de la coline 6, CH-1205 Genève

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-DIA-011603594001/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38600586/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38620123/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: SIB

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38720257/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38748923/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: HUG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-38634660/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HUG

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-38694085/2022

characteristic: isolate

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collection date

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-DIA-161601046801/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

tag: Namespace:Health Board of Estonia

text: The Health Board of Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Heleri Inno

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

text: Estonia

text: Northern Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: Southern Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: healthy

text: Homo sapiens

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Western Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (longitude)

text: Central Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

text: Homo sapiens

characteristic: host sex


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Central Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

text: Homo sapiens

text: male

characteristic: host sex


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Northern Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (longitude)

text: Central Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

text: North-Eastern Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

text: Homo sapiens

text: female

characteristic: host sex


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Southern Estonia

text: human

text: healthy

text: Homo sapiens

text: female

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

text: Homo sapiens

text: male

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Western Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Central Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

characteristic: host sex


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

text: Northern Estonia

text: human

text: healthy

text: Homo sapiens

text: female

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Central Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

text: Homo sapiens

text: male

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

text: Southern Estonia

text: human

text: healthy

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

text: Homo sapiens

text: male

characteristic: host sex


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Western Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Northern Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: male

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

text: North-Eastern Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Health Board of Estonia

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Central Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

characteristic: host sex


characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: Southern Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GENENTECH

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

characteristic: common name

text: Protocols: Tumors were collected, weighed and minced into small pieces. To isolate naive flank skin, hair was shaved, adipose tissue was removed and skin tissue was minced. All tissues were subsequently enzymatically digested using a cocktail of dispase (Life Technologies, Carlsbad, CA), collagenase P and DNaseI (Roche, Penzberg, Germany) for 45 min at 37°C, to obtain a single cell suspension. Cells were counted using a Vi-CELL XR (Beckman Coulter, Brea, CA). For cytokine staining, cell suspensions were stimulated with eBioscience Cell Stimulation Cocktail plus protein transport inhibitors (cat. 00-4975-93) resuspended in RPMI with 10% FBS plus 2 mmol/L l-glutamine and 2-Mercaptoethanol for 2 hours at 37°C.Cells were labelled with monoclonal antibodies purchased from BioLegend. Samples were enriched for CD24-CD45- stromal cells. Sorted cells were loaded onto a 10x Chromium Chip using reagents from the Chromium Single Cell 3’ Library Kit (10x Genomics) according to the manufacturer’s protocol. Amplified cDNA was used for 3’ RNA-seq library generation, RNA-seq libraries were prepared following the manufacturer’s user guide (10x Genomics).

characteristic: description

text: adult

characteristic: developmental stage

text: cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: injected subcutaneous with KPR cells

characteristic: growth condition

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: skin of body

characteristic: organism part

text: Mus musculus


characteristic: External Id

text: GENENTECH

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: cancer

text: injected subcutaneous with KPR cells

text: Mus musculus

characteristic: organism

text: Mus musculus

text: skin of body

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GENENTECH

characteristic: INSDC first public

text: public

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: skin of body

text: Mus musculus

text: WT

characteristic: title


text: Health Board of Estonia

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

text: Estonia

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: organism

characteristic: title


text: Health Board of Estonia

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: Central Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Central Estonia

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: female


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Northern Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Western Estonia

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: organism

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Central Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: Western Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Northern Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Southern Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: organism

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IHU - Mediterranee Infection

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:IHU - Mediterranee Infection

text: Isolated from stool in a health patient in culturomics

text: stool

text: Bacillus sp. Marseille-Q3570

text: Bacillus sp. Marseille-Q3570

characteristic: strain

text: Bacillus cagae genome


text: IHU - Mediterranee Infection

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Isolated from camel's milk by culturomics

characteristic: description

text: Camelus dromedarius

characteristic: host scientific name

text: Camel Milk

text: Mammaliicoccus sp. Marseille-Q6498

characteristic: organism

text: Mammaliicoccus sp. Marseille-Q6498

text: Mammaliicoccus massiliensis genome

characteristic: title


text: IHU - Mediterranee Infection

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Camelus dromedarius

text: Camel Milk

text: Microbacterium sp. Marseille-Q6965

text: Microbacterium sp. Marseille-Q6965

text: Microbacterium lactimassiliense genome


text: public

tag: Namespace:Zhongkai University of Agriculture and Engineering

text: ArrayExpress

characteristic: broker name

text: grass carp

characteristic: common name

text: Protocols: The fish were unsystematically divided into three groups of 270 fish with triplicates. The corresponding fish dietary treatments were prepared using a basic feed (purchased from Tongwei Group, Chengdu, China) for the control group (CG) and the same but supplemented with enrofloxacin (EG) or florfenicol (FG) at a concentration of 10 mg/kg.The midgut tissues of 12 individual fish from each of the three treatment groups were snap-frozen and aseptically harvested in liquid nitrogen for their microbial analyses. The grass carp midguts were aseptically dissected and collected from the control, enrofloxacin, and florfenicol groups (respectively, n = 12 fish per tank). Total genomic DNA was isolated from the midgut samples with a DNeasy PowerSoil kit (Qiagen, Hilden, Germany) according its manufacturer’s instructions. The V3-V4 hypervariable region was amplified by a universal pair of primers (343F-798R).Sequencing libraries were created by blending the amplicons and then assembling them on Illumina MiSeq platform PE300.

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

characteristic: organism part

text: Ctenopharyngodon idella

text: control

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Zhongkai University of Agriculture and Engineering

text: public

text: ArrayExpress

text: grass carp

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

text: Ctenopharyngodon idella

text: control


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: grass carp

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

text: Ctenopharyngodon idella

text: enrofloxacin


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: grass carp

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

text: Ctenopharyngodon idella

text: florfenicol


text: IHU - Mediterranee Infection

text: public

characteristic: description

text: Camelus dromedarius

characteristic: host scientific name

text: Camel Milk

text: Neobacillus sp. Marseille-Q6967

text: Neobacillus sp. Marseille-Q6967

characteristic: strain

text: Neobacillus lactimassiliensis genome


text: public

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: grass carp

text: Protocols: The fish were unsystematically divided into three groups of 270 fish with triplicates. The corresponding fish dietary treatments were prepared using a basic feed (purchased from Tongwei Group, Chengdu, China) for the control group (CG) and the same but supplemented with enrofloxacin (EG) or florfenicol (FG) at a concentration of 10 mg/kg.The midgut tissues of 12 individual fish from each of the three treatment groups were snap-frozen and aseptically harvested in liquid nitrogen for the transcriptomic analyses. Total RNA was extracted from the midgut of grass carp by using the TRlzol Reagent and following the manufacturer’s instructions (Life Technologies, California, USA). cDNA libraries were constructed as per the instruction manual of NEBNext Ultra RNA Library Prep Kit.

text: Ctenopharyngodon idella

characteristic: organism

text: Ctenopharyngodon idella

text: gut

text: Ctenopharyngodon idella

text: male

characteristic: sex

text: control

characteristic: title


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: grass carp

characteristic: common name

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

characteristic: organism part

text: Ctenopharyngodon idella

text: male

text: enrofloxacin

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: grass carp

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

text: Ctenopharyngodon idella

text: enrofloxacin


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: grass carp

characteristic: description

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella

text: gut

text: Ctenopharyngodon idella

text: male

text: florfenicol


text: ETH Zurich, DBSSE

text: public

characteristic: SRA accession

tag: Namespace:ETH Zurich, DBSSE

text: ArrayExpress

text: mixed Hoik1; H9; Wibj2 and 409B2

text: mixed fibroblast and embryonic stem cell

text: human

text: Protocols: We collected these single cell suspensions from an EB time point (day 4), the time points of neuronal induction (day 7, 9 and 11) and after embedding in matrigel and starting the neuronal differentiation process (day 12, 16, 18, 21, 26, 31 and 61). Multiple organoids of each line were pooled together to obtain a sufficient number of cells. For time points just after matrigel embedding, matrigel was dissolved in Cell Recovery Solution (Corning, 354253) for 15 min at 4°C. Organoids were cut in halves and washed three times with HBSS without Ca2+/Mg2+ (STEMCELL technologies, 37250). Single cell suspensions were acquired by dissociation of the organoids with a papain-based dissociation (Miltenyi Biotec, 130-092-628). Each sample was divided into a sample to be processed for scRNAseq and a sample for scATACseq, cryopreserved in Cryostor CS10, moved to -80C in a MrFrosty before moving to liquid nitrogen storage the next day. They were kept in liquid nitrogen until processesing. The cryopreserved single cell suspensions of each time point were thawed by warming up the cryo for 1-2 minutes in a water bath at 37℃ and directly centrifuged in 10ml prewarmed DMEM with 10% FBS. Cells were washed twice with PBS + 5% BSA and filtered through a 40µm cell strainer (Flomi). Cerebral organoids were generated from four different stem cell lines (H9, 409B2, Wibj2, Hoik1) simultaneously using a whole brain organoid differentiation protocol (Lancaster et al. 2013; https://doi.org/10.1038/nature12517). Single cell RNAseq libraries were generated with the Chromium Single Cell 3’ V3 Library & Gel Bead Kit. Single cell encapsulation and library preparation were performed according to the manufacturer's protocol. Single cell RNAseq libraries were generated with the Chromium Single Cell 3’ V3 Library & Gel Bead Kit. Single cell encapsulation and library preparation were performed according to the manufacturer's protocol.

text: mixed adult and embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mixed skin and inner cell mass

text: Homo sapiens


text: Sapienza University

text: public

tag: Namespace:Sapienza University

characteristic: Submitter Id

characteristic: collection date

text: Skin sample, Healthy

text: Italy

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Patient #33

characteristic: isolate

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sapienza University

characteristic: INSDC center name

text: public

text: Skin sample, Healthy

text: Italy

text: healthy

text: Homo sapiens

text: Patient #34

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Skin sample, Healthy

characteristic: description

text: Italy

text: healthy

text: Homo sapiens

text: Patient #35

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

characteristic: Submitter Id

text: Skin sample, Healthy

text: Italy

text: healthy

text: Homo sapiens

text: Patient #36

text: Skin

text: Cutibacterium acnes

characteristic: organism

text: Cutibacterium acnes


text: Sapienza University

text: public

characteristic: collection date

text: Skin sample, Healthy

text: Italy

characteristic: geographic location (country and/or sea)

text: healthy

text: Homo sapiens

text: Patient #37

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

text: Skin sample, Healthy

text: Italy

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Patient #38

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

text: Skin sample, Healthy

text: Italy

text: healthy

text: Homo sapiens

text: Patient #39

characteristic: isolate

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sapienza University

text: public

text: Skin sample, Healthy

text: Italy

text: healthy

text: Homo sapiens

text: Patient #40

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sapienza University

text: public

text: Skin sample, Healthy

text: Italy

text: healthy

text: Homo sapiens

text: Patient #41

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Skin sample, Healthy

text: Italy

text: healthy

text: Homo sapiens

text: Patient #42

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #44

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

characteristic: SRA accession

text: Skin sample, Acne

characteristic: description

text: Italy

text: diseased

text: Homo sapiens

text: Patient #45

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

characteristic: Submitter Id

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #46

text: Skin

text: Cutibacterium acnes

characteristic: organism

text: Cutibacterium acnes


text: Sapienza University

text: public

characteristic: collection date

text: Skin sample, Acne

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Patient #47

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

text: Skin sample, Acne

text: Italy

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Patient #48

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

text: public

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #49

characteristic: isolate

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Sapienza University

text: public

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #50

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sapienza University

text: public

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #52

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #53

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: Sapienza University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Skin sample, Acne

text: Italy

text: diseased

text: Homo sapiens

text: Patient #57

text: Skin

text: Cutibacterium acnes

text: Cutibacterium acnes


text: ETH Zurich, DBSSE

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

text: Protocols: Single cell suspensions were acquired by dissociation of the organoids with a papain-based dissociation (Miltenyi Biotec, 130-092-628). Cerebral organoids were generated using a whole brain organoid differentiation protocol (Lancaster et al. 2013). The iCRISPR-Cas9 line was cultured on matrigel in mTesr1 supplemented with P/S (1:200) and Cas9 was induced 2 days prior to lentiviral transduction by adding 2µg/ml doxycycline. 24 hours later cells were dissociated into single cells with TrypLE and 300.000 cells of the iCRISPR-Cas9 cells were plated in at least 12 wells of matrigel-coated 6-well plates in mTesr1 supplemented with P/S (1:200), Y-27632 (final concentration 5µM) and 2µg/ml doxycycline. 24 hours later cells were transduced with a low multiplicity of infection (MOI) where less than 30% of the cells were GFP+ to ensure that the majority GFP+ cells only received one lentivirus per cells. The viral particles were added to the culture media (mTesr1 supplemented with P/S , Y-27632 and 2µg/ml doxycycline). 24h later, media was exchanged for mTesr1 supplemented with P/S and 2µg/ml doxycycline until 70% confluency was reached. Cells were then sorted with fluorescence activated cell sorting (FACS) for GFP-positive cells to enrich for CROP-seq-vector-positive cells and plated on matrigel-coated plates in mTesr1 supplemented with 100 μg/ml Primocin (InvivoGen, ant-pm-1) and Y-27632 (final concentration 5µM). Single cell RNAseq libraries were generated with the Chromium Single Cell 3’ V3 Library & Gel Bead Kit. Single cell encapsulation and library preparation were performed according to the manufacturer's protocol. Single cell RNAseq libraries were generated with the Chromium Single Cell 3’ V3 Library & Gel Bead Kit. Single cell encapsulation and library preparation were performed according to the manufacturer's protocol.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: mosaic perturbations targeted at 20 transcription factors (cropseq)

characteristic: genetic modification

text: doxycycline-inducible Cas9

characteristic: genotype

text: mixed pool of organoids 1

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich, DBSSE

text: public

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: normal

text: doxycycline-inducible Cas9

text: mixed pool of organoids 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH Zurich, DBSSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: normal

text: doxycycline-inducible Cas9

text: mixed pool of organoids 3

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


text: ETH Zurich, DBSSE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: doxycycline-inducible Cas9

text: mixed pool 1

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


text: ETH Zurich, DBSSE

text: public

text: ArrayExpress

text: fibroblast

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genetic modification

text: doxycycline-inducible Cas9

characteristic: genotype

text: mixed pool 2

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich, DBSSE

text: public

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: normal

text: doxycycline-inducible Cas9

text: mixed pool 3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH Zurich, DBSSE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: mixed Hoik1; H9; Wibj2 and 409B2

text: human

text: Protocols: We collected these single cell suspensions from an EB time point (day 4), the time points of neuronal induction (day 7, 9 and 11) and after embedding in matrigel and starting the neuronal differentiation process (day 12, 16, 18, 21, 26, 31 and 61). Multiple organoids of each line were pooled together to obtain a sufficient number of cells. For time points just after matrigel embedding, matrigel was dissolved in Cell Recovery Solution (Corning, 354253) for 15 min at 4°C. Organoids were cut in halves and washed three times with HBSS without Ca2+/Mg2+ (STEMCELL technologies, 37250). Single cell suspensions were acquired by dissociation of the organoids with a papain-based dissociation (Miltenyi Biotec, 130-092-628). Each sample was divided into a sample to be processed for scRNAseq and a sample for scATACseq, cryopreserved in Cryostor CS10, moved to -80C in a MrFrosty before moving to liquid nitrogen storage the next day. They were kept in liquid nitrogen until processesing. The cryopreserved single cell suspensions of each time point were thawed by warming up the cryo for 1-2 minutes in a water bath at 37℃ and directly centrifuged in 10ml prewarmed DMEM with 10% FBS. Cells were washed twice with PBS + 5% BSA and filtered through a 40µm cell strainer (Flomi). Nuclei were isolated according to the protocol provided by 10x genomics (Demonstrated protocol CG000169 Rev D) using the low input protocol and a lysis time of 3 min. Cerebral organoids were generated from four different stem cell lines (H9, 409B2, Wibj2, Hoik1) simultaneously using a whole brain organoid differentiation protocol (Lancaster et al. 2013; https://doi.org/10.1038/nprot.2014.158). Single cell ATACseq libraries were generated with the Chromium Single Cell ATAC V1 Library & Gel Bead Kit. Nuclei encapsulation and library preparation were performed according to the manufacturer's protocol. Single cell ATACseq libraries were generated with the Chromium Single Cell ATAC V1 Library & Gel Bead Kit. Nuclei encapsulation and library preparation were performed according to the manufacturer's protocol.

text: mixed adult and embryo

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mixed skin and inner cell mass

text: Homo sapiens

characteristic: title


text: Portugal

characteristic: Country

text: yes

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: clinical

characteristic: Source

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: Homo sapiens

characteristic: host scientific name

text: Listeria monocytogenes

text: Listeria monocytogenes


text: Portugal

text: yes

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: clinical

characteristic: description

text: Homo sapiens

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: Saint-Antoine Hospital

text: public

tag: Namespace:Saint-Antoine Hospital

characteristic: collection date

text: C. difficile feces sample

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo Sapiens

text: not provided

characteristic: isolate

text: human feces

text: Clostridioides difficile

text: Clostridioides difficile


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Saint-Antoine Hospital

text: public

text: A10 FR125

characteristic: Submitter Id

text: C. difficile feces sample

text: France

text: diseased

text: Homo Sapiens

text: not provided

text: human feces

text: Clostridioides difficile

characteristic: organism

text: Clostridioides difficile


characteristic: External Id

text: Saint-Antoine Hospital

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Groupe I FR067

text: C. difficile feces sample

text: France

text: diseased

text: Homo Sapiens

text: not provided

text: human feces

text: Clostridioides difficile

text: Clostridioides difficile

characteristic: title


text: Saint-Antoine Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M4 FR147

characteristic: SRA accession

text: C. difficile feces sample

text: France

text: diseased

text: Homo Sapiens

text: not provided

text: human feces

text: Clostridioides difficile

text: Clostridioides difficile


text: Saint-Antoine Hospital

text: public

text: N7 FR089

text: C. difficile feces sample

characteristic: description

text: France

text: diseased

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: human feces

text: Clostridioides difficile

text: Clostridioides difficile


characteristic: ENA-CHECKLIST

text: Saint-Antoine Hospital

text: public

text: I1 FR099

characteristic: collection date

text: C. difficile feces sample

text: France

text: diseased

text: Homo Sapiens

text: not provided

text: human feces

text: Clostridioides difficile

text: Clostridioides difficile


text: Anthony Smith, NICD

text: public

tag: Namespace:Anthony Smith, NICD

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

text: South Africa

characteristic: geographic location

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: WT V583 Replicate 1


text: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

text: public

characteristic: Submitter Id

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: WT V583 Replicate 2


characteristic: External Id

characteristic: INSDC center name

text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: WT V583 Replicate 3


characteristic: INSDC first public

text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS21 Replicate 1

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS21 Replicate 2


text: public

characteristic: SRA accession

text: IS-Seq of IS256 Insertions

characteristic: description

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS21 Replicate 3


characteristic: ENA-CHECKLIST

text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS25 Replicate 1


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS25 Replicate 2


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS25 Replicate 3


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS26 Replicate 1


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS26 Replicate 2


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19RS26 Replicate 3


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19SR28 Replicate 1


text: public

text: IS-Seq of IS256 Insertions

text: Enterococcus faecalis

text: Enterococcus faecalis

text: 19SR28 Replicate 2


text: public

tag: Namespace:Regional Public Health Authority with the seat in Košice, Slovakia

text: Science Park of Comenius University of Bratislava

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Public Health Authority with the seat in Košice, Slovakia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: broker name

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

text: not provided

text: Slovakia

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: not provided

text: Slovakia

unit: month

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IS-Seq of IS256 Insertions from a colony originating in a mouse

characteristic: description

text: USA

text: healthy

text: Mus musculus

text: Mouse feces plated on BHI with 100 ug/mL gentamicin

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

characteristic: serovar

characteristic: strain

text: Mouse 1 Day 12 Replicate 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Mus musculus

characteristic: host scientific name

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 1 Day 12 Replicate 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: USA

text: healthy

text: Mus musculus

characteristic: isolate

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 1 Day 16 Replicate 1


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 1 Day 16 Replicate 2


text: public

characteristic: description

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: Mouse 2 Day 12 Replicate 1


characteristic: ENA-CHECKLIST

text: public

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 2 Day 12 Replicate 2

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 2 Day 16 Replicate 1


text: public

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 2 Day 16 Replicate 2


text: public

text: USA

text: healthy

characteristic: host health state

text: Mus musculus

characteristic: host scientific name

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 5 Day 12 Replicate 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 5 Day 12 Replicate 2


characteristic: INSDC first public

text: public

text: USA

text: healthy

text: Mus musculus

characteristic: isolate

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 5 Day 16 Replicate 1


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 5 Day 16 Replicate 2


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 6 Day 12 Replicate 1


text: public

characteristic: description

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: Mouse 6 Day 12 Replicate 2


characteristic: ENA-CHECKLIST

text: public

text: USA

text: healthy

text: Mus musculus

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Mouse 6 Day 16 Replicate 1

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

text: IS-Seq of IS256 Insertions from Fecal Swab of Patient

text: Enterococcus community was isolated from a fecal swab of human patient plated on bile esculin azide

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 0


text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 46


text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 54


text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 69


text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 81


text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 88


text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Day 94


text: Anthony Smith, NICD

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: South Africa

characteristic: geographic location

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Heleri Inno

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: description

text: Estonia

text: Northern Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: Western Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: Central Estonia

characteristic: geographic location (region and locality)

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

characteristic: host common name

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: geographic location (latitude)

text: Western Estonia

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (country and/or sea)

text: Central Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

text: Northern Estonia

characteristic: geographic location (region and locality)

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

text: North-Eastern Estonia

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (country and/or sea)

text: Southern Estonia

characteristic: geographic location (region and locality)

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

text: Central Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

text: Estonia

characteristic: geographic location (longitude)

text: Western Estonia

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

text: Northern Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FBRAS

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: African clawed frog

characteristic: common name

characteristic: description

text: Xenopus laevis

characteristic: organism

text: Xenopus laevis

characteristic: title


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Portugal

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: Health Board of Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: description

text: Estonia

text: Central Estonia

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Western Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: isolate