RNAJerukNormal

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RNAJerukNormal

tag: Namespace:BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: Submitter Id

text: Elda Kristiani Paisey

characteristic: collected by

text: Bogor Agricultural University (IPB University)

characteristic: collecting institution

characteristic: collection date

text: Long reads sequencing for Citrus aurantiifolia RNA

characteristic: description

text: Indonesia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dramaga, Bogor, West Java

characteristic: geographic location (region and locality)

text: wetland

characteristic: habitat

text: adult

characteristic: lifestage

text: Citrus aurantiifolia

characteristic: organism

text: Leaves

characteristic: organism part

text: Penelitian Disertasi Doktor - PDD KEMENDIKBUDRISTEK

characteristic: project name

text: Citrus aurantiifolia

text: hermaphrodite

characteristic: sex

characteristic: specimen voucher

text: Jeruk Normal RNA

characteristic: title


RNAJerukEthylene

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RNAJerukEthylene

characteristic: Submitter Id

text: Elda Kristiani Paisey

text: Indonesia

text: Dramaga, Bogor, West Java

text: wetland

text: adult

text: Citrus aurantiifolia

text: Leaves

text: Citrus aurantiifolia

text: hermaphrodite

text: Jeruk Ethylene RNA


RNAJerukAbscisicAcid

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

text: public

text: RNAJerukAbscisicAcid

text: Elda Kristiani Paisey

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Indonesia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dramaga, Bogor, West Java

characteristic: geographic location (region and locality)

text: wetland

characteristic: habitat

text: adult

characteristic: lifestage

text: Citrus aurantiifolia

text: Leaves

text: Citrus aurantiifolia

text: hermaphrodite

text: Jeruk Abscisic Acid RNA


RNAAbiuNormal

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

text: public

text: RNAAbiuNormal

text: Abdullah Bin Arif

text: Long reads sequencing for Pouteria caimito RNA

text: Indonesia

text: Dramaga, Bogor, West Java

text: wetland

text: adult

text: Pouteria caimito

characteristic: organism

text: Aril Fruit

characteristic: organism part

characteristic: project name

text: Pouteria caimito

text: hermaphrodite

characteristic: sex

characteristic: specimen voucher

text: Abiu Normal RNA

characteristic: title


RNAAbiuBrowning

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RNAAbiuBrowning

characteristic: Submitter Id

text: Abdullah Bin Arif

characteristic: collected by

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: Indonesia

text: Dramaga, Bogor, West Java

text: wetland

text: adult

text: Pouteria caimito

text: Aril Fruit

text: Pouteria caimito

text: hermaphrodite

text: Abiu Browning RNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSIC

text: public

text: house mouse

characteristic: common name

text: Mice feces

text: Mouse intestine environment

characteristic: environment (biome)

text: Mouse intestines

characteristic: environment (feature)

text: feces ERC000013

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Mus musculus

text: Mus musculus

text: Illumina NextSeq 500 /MiSeq

characteristic: sequencing method


RNAPalaFragransLeaves

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RNAPalaFragransLeaves

characteristic: Submitter Id

text: Karmanah

characteristic: collected by

text: nutmeg

text: Long reads sequencing for Myristica fragrans RNA

text: Indonesia

text: Dramaga, Bogor, West Java

characteristic: geographic location (region and locality)

text: wetland

characteristic: habitat

text: adult

characteristic: lifestage

text: Myristica fragrans

characteristic: organism

text: Leaves

characteristic: organism part

text: Penelitian Dasar Unggulan Perguruan Tinggi - PDUPT KEMENDIKBUDRISTEK

characteristic: project name

text: Myristica fragrans

text: hermaphrodite

characteristic: sex

characteristic: specimen voucher

text: Pala fragrans Leaves RNA

characteristic: title


RNAPalaFatuaLeaves

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

text: public

text: RNAPalaFatuaLeaves

text: Karmanah

characteristic: collecting institution

characteristic: collection date

text: Long reads sequencing for Myristica fatua RNA

characteristic: description

text: Indonesia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dramaga, Bogor, West Java

text: wetland

text: adult

text: Myristica fatua

text: Leaves

text: Myristica fatua

text: hermaphrodite

text: Pala fatua Leaves RNA


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:European Research INstitute for the Biology of Ageing

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic cell line

characteristic: cell line

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The cell lines from Bloom Syndrome and control patients were obtained from the Cell Repository of Coriell Institute: GM07492 and GM07545 (primary fibroblasts, control), GM02085 and GM03402 (primary fibroblasts, BS), GM12892 (EBV-transformed B-lymphocytes, control), GM16375 and GM17361 (EBV-transformed B-lymphocytes, BS). Mouse ES cell line F121.6 (F1 hybrid between 129/Sv and Cast/EiJ) was a kind gift from Prof. J. Gribnau (Erasmus MC, Rotterdam, The Netherlands). Blm mutant ES cell lines were generated as previously described (7). Fibroblasts were cultured in Dulbecco's modified Eagle's medium (DMEM) (Life Technologies) supplemented with 10% v/v fetal bovine serum (FBS) (Sigma Aldrich) and 1% v/v penicillin-streptomycin (Life Technologies), B-lymphocytes in RPMI1640 (Life Technologies) supplemented with 15% v/v FBS and 1% v/v penicillin-streptomycin. ES cells were cultured on mitotically arrested mouse embryonic fibroblast cells in DMEM (Life Technologies), supplemented with 15% v/v FBS (Bodinco BV), 1% v/v penicillin-streptomycin, 1% v/v non-essential amino acids (Life Technologies), 50 µM 2-mercaptoethanol (ThermoFisher Scientific), and 1,000 U ml−1 leukemia inhibitor factor (Merck). All cells were cultured at 37 °C in 5% CO2. Exponentially growing cells were harvested from individual cultures for each sample, and RNA was isolated using the Nucleospin RNA kit (Macherey Nagel). Libraries were generated for each of the three replicates, with exception of one sample where isolation produced RNA with a low RIN score (below 7) and thus was done in duplicate. RNA-sequencing libraries were prepared using the NEBNext Ultra RNA Library Prep kit for Illumina (NEB) combined with the NEBNext rRNA Depletion kit (NEB). Complementary DNA quality and concentrations were assessed using the High Sensitivity dsDNA kit (Agilent) on the Agilent 2100 Bio-Analyzer and the Qubit 2.0 Fluorometer (Life Technologies).

text: Blm knock-out

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: bone marrow cell

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: European Research INstitute for the Biology of Ageing

text: public

text: ArrayExpress

text: embryonic cell line

text: mouse embryonic stem cell

text: house mouse

text: Blm knock-out

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow cell

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: embryonic cell line

text: mouse embryonic stem cell

text: house mouse

characteristic: description

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow cell

text: Mus musculus

text: female


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast derived cell line

text: fibroblast

text: human

text: Bloom syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: human

characteristic: common name

text: Bloom syndrome

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: human

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: female

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

text: lymphoblastoid cell line

text: lymphoblast

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: lymphoblastoid cell line

characteristic: cell line

text: lymphoblast

characteristic: cell type

text: human

text: Bloom syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FUNCTIONAL GENOMICS CENTER ZURICH

text: public

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

text: 8-10 weeks

text: house mouse

characteristic: common name

text: C57BL/6 with Sim1-cre;LSL-tdTomato;mir-7a1fl/fl;mir-7a2fl/fl;mir-7bfl/fl

characteristic: mouse strain

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female


text: FUNCTIONAL GENOMICS CENTER ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 8-10 weeks

text: house mouse

characteristic: description

text: C57BL/6 with Sim1-cre;LSL-tdTomato

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex


E-MTAB-11799:Sample 22

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11799:Sample 22

tag: Namespace:Laboratory of Molecular Medicine  and genomics

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Mino (human mantle cell lymphoma, ATCC CRL-3000) cell lines were cultured in RPMI 1640 (Sigma, now Merck), while MDA-MD-231 cell line (human breast adenocarcinoma, ATCC HTB-26) was cultured in DMEM (Sigma, now Merck); both media were supplemented with 10% FCS (Fetal Calf Serum, Gibco) and 100 µg/mL streptomycin, and 100 IU/mL penicillin (Sigma, now Merk) and maintained at 37°C in a humidified 5% CO2 atmosphere. Cell death was induced with human IFN-a (IntronA SP Europe) and 9-cis-Retinoic Acid (Sigma, now Merck) used at 1000 U/ml and 1 µmol/L, respectively, for 48 h, or Doxorubicin (Sigma, now Merck) used at 0.5 µM, for 24 h. As control tumor cells were irradiated with 80 gray for 16 minutes Cell death was induced with human IFN-a (IntronA SP Europe) and 9-cis-Retinoic Acid (Sigma, now Merck) used at 1000 U/ml and 1 µmol/L, respectively, for 48 h, or Dox-orubicin (Sigma, now Merck) used at 0.5 µM, for 24 h. As control tumor cells were irradi-ated with 80 gray for 16 minutes Total RNA was extracted as described previously in Tarallo et al. (Tarallo et al., 2016 Genome Biology) Indexed libraries were prepared from 1 µg/ea. purified RNA with Tru- Seq Stranded Total RNA Sample Prep Kit (Illumina Inc.) according to the manufacturers instructions. Li-braries were sequenced (paired-end, 2 x 100 cycles) at a concentration of 8 pmol/L per lane on HiSeq2500 platform (Illumina Inc.).

text: adenocarcinoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens

text: Sample 22

characteristic: title


E-MTAB-11799:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Laboratory of Molecular Medicine and genomics

text: public

text: E-MTAB-11799:Sample 23

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: adenocarcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 23


E-MTAB-11799:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11799:Sample 24

text: ArrayExpress

text: human

characteristic: common name

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 24


E-MTAB-11799:Sample 19

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11799:Sample 19

text: ArrayExpress

text: human

characteristic: description

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 19


E-MTAB-11799:Sample 20

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11799:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 20


E-MTAB-11799:Sample 21

text: public

text: E-MTAB-11799:Sample 21

text: ArrayExpress

text: human

text: adenocarcinoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens

text: Sample 21

characteristic: title


E-MTAB-11799:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11799:Sample 13

text: ArrayExpress

characteristic: broker name

text: human

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 13


E-MTAB-11799:Sample 14

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11799:Sample 14

text: ArrayExpress

characteristic: cell line

text: human

text: adenocarcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 14


E-MTAB-11799:Sample 15

characteristic: External Id

text: public

text: E-MTAB-11799:Sample 15

text: ArrayExpress

text: human

characteristic: common name

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 15


E-MTAB-11799:Sample 16

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11799:Sample 16

text: ArrayExpress

text: human

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 16


E-MTAB-11799:Sample 17

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11799:Sample 17

text: ArrayExpress

text: human

characteristic: description

text: adenocarcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 17


E-MTAB-11799:Sample 18

text: public

text: E-MTAB-11799:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adenocarcinoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens

text: Sample 18


E-MTAB-11799:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11799:Sample 10

text: ArrayExpress

text: MINO

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-11799:Sample 11

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11799:Sample 11

text: ArrayExpress

characteristic: broker name

text: MINO

characteristic: cell line

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 11


E-MTAB-11799:Sample 12

characteristic: External Id

text: public

text: E-MTAB-11799:Sample 12

text: ArrayExpress

text: MINO

text: human

characteristic: common name

text: mantel cell lymphoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 12


E-MTAB-11799:Sample 7

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11799:Sample 7

text: ArrayExpress

text: MINO

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 7


E-MTAB-11799:Sample 8

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11799:Sample 8

text: ArrayExpress

text: MINO

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 8


E-MTAB-11799:Sample 9

text: public

text: E-MTAB-11799:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: MINO

text: human

characteristic: description

text: mantel cell lymphoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 9


E-MTAB-11799:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11799:Sample 1

text: ArrayExpress

text: MINO

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-11799:Sample 2

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11799:Sample 2

text: ArrayExpress

characteristic: broker name

text: MINO

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-11799:Sample 3

characteristic: External Id

text: public

text: E-MTAB-11799:Sample 3

text: ArrayExpress

text: MINO

characteristic: cell line

text: human

characteristic: common name

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 3


E-MTAB-11799:Sample 4

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11799:Sample 4

text: ArrayExpress

text: MINO

text: human

text: mantel cell lymphoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 4


E-MTAB-11799:Sample 5

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11799:Sample 5

text: ArrayExpress

text: MINO

text: human

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 5


E-MTAB-11799:Sample 6

text: public

characteristic: SRA accession

text: E-MTAB-11799:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: MINO

text: human

characteristic: description

text: mantel cell lymphoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


characteristic: ENA-LAST-UPDATE

text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 3

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 4

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 5

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 6

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 7

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 8

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 9

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 10

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 11

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 12

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 13

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 14

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: Developing xylem UPSC Green houses 90736 Umea replicate number 15

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

characteristic: collection date

text: Norway

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood culture

characteristic: isolation source

text: Haemophilus influenzae

text: Haemophilus influenzae


characteristic: External Id

text: NIPH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ELIXIR-Norway

text: Norway

text: diseased

text: Homo sapiens

text: pleural fluid

text: Haemophilus influenzae

text: Haemophilus influenzae

characteristic: title


text: NIPH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELIXIR-Norway

text: Norway

text: diseased

text: Homo sapiens

text: spinal fluid

text: Haemophilus influenzae

characteristic: organism

text: Haemophilus influenzae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIPH

text: public

characteristic: Submitter Id

text: ELIXIR-Norway

text: Norway

text: diseased

text: Homo sapiens

text: peritoneal dialysis fluid

text: Haemophilus influenzae

text: Haemophilus influenzae


characteristic: ENA-LAST-UPDATE

text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

characteristic: collection date

text: Norway

text: diseased

text: Homo sapiens

text: pericardial fluid

text: Haemophilus influenzae

text: Haemophilus influenzae


text: NIH/NHGRI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3183671,SRR3183672,SRR3183673,SRR3183674,SRR3183675,SRR3183676,SRR3183677,SRR3183678,SRR3183679.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Bdellovibrio sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Bdellovibrio sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: dx1JB8mxRm_bin.5.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642430.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Varibaculum sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Varibaculum sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: xsSW4fTn0B_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642441,SRR3642442,SRR3642443,SRR3642444,SRR3642445.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Rothia mucilaginosa

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Rothia mucilaginosa

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: WnTvU3NmSR_bin.1.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642490.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Streptococcus sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Streptococcus sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: oGrOpHIn27_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642585,SRR3642586.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Corynebacterium pyruviciproducens

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Corynebacterium pyruviciproducens

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: n4sUflcE7s_bin.1.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642587,SRR3642588.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Prevotella corporis

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Prevotella corporis

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: s8ovkSHZME_bin.2.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642737,SRR3642738.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Corynebacteriaceae bacterium

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Corynebacteriaceae bacterium

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: YT7KkbfErf_bin.3.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642786,SRR3642788.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Alistipes putredinis

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Alistipes putredinis

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 4Ot1K2Uvic_bin.12.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: qqp0fsPXbe_bin.3.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Clostridium sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: VPy9ZQ66QA_bin.4.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Faecalibacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Faecalibacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: GNJvA27ky9_bin.6.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3642790,SRR3642792,SRR3642793,SRR3642795.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Corynebacterium vitaeruminis

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Corynebacterium vitaeruminis

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 4OfrV2FyDg_bin.9.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643028.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Anaerococcus sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerococcus sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: 3zJPfo700p_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643031,SRR3643032.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Porphyromonas sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Porphyromonas sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: IQW7MWdcEe_bin.2.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Neisseria cinerea

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Neisseria cinerea

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MRGlX7Nqwc_bin.8.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643034.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Corynebacterium ureicelerivorans

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Corynebacterium ureicelerivorans

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: ftJtv3UNaR_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643314,SRR3643315.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Actinomyces oris

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Actinomyces oris

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: iknnSsCAXX_bin.1.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643364,SRR3643365.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Streptococcus sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Streptococcus sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: QTmsHmHhFT_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643519.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Dietzia sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Dietzia sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: DZVGnjm25p_bin.3.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643853,SRR3643854.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Aggregatibacter sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Aggregatibacter sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: a4K89NiO71_bin.4.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3643919,SRR3643920.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Acinetobacter nosocomialis

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Acinetobacter nosocomialis

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: zLb8kjRg7y_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3644026,SRR3644027,SRR3644028.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Gordonia paraffinivorans

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Gordonia paraffinivorans

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: DcOz3W0pbw_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7687877,SRR7687878.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Achromobacter xylosoxidans

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Achromobacter xylosoxidans

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: 6nlnSB1FeJ_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7687923,SRR7687924,SRR7687925,SRR7687926,SRR7687927.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Moraxella catarrhalis

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Moraxella catarrhalis

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: OjSwSWoPHY_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7688630,SRR7688631,SRR7688632,SRR7688633.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Microbacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Microbacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: nLj3f5IVGj_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7688678.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Pseudomonas sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Pseudomonas sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: XPTpNinHCi_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7688736.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Brevibacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Brevibacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: MlvXyeV0ZW_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

text: not provided

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR14198834.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Gardnerella vaginalis

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Gardnerella vaginalis

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: MihHfjTX5f_bin.2.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

text: not provided

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR14198835.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Porphyromonas bennonis

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Porphyromonas bennonis

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: AtgLXSoFbo_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

text: not provided

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR14198836.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Conchiformibius steedae

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Conchiformibius steedae

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 98yxbXxVq9_bin.11.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

text: not provided

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Pool Time Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1624837,SRR1624838,SRR1624839,SRR1624840,SRR1624841,SRR1624842,SRR1624843,SRR1624844,SRR1624845,SRR3183570,SRR3183571,SRR3183572,SRR3183573,SRR3183574,SRR3183575,SRR3183576,SRR3183577,SRR3183578,SRR3183671,SRR3183672,SRR3183673,SRR3183674,SRR3183675,SRR3183676,SRR3183677,SRR3183678,SRR3183679.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Nitrososphaeraceae bacterium

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrososphaeraceae bacterium

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: loNSs8AJHL_bin.8.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

text: not provided

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR14198846.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Micrococcus luteus

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Micrococcus luteus

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: e1NEryCHFx_bin.4.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

text: not provided

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Pool Time Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1624864,SRR1624865,SRR1624866,SRR1624867,SRR1624868,SRR1624869,SRR1624870,SRR1624871,SRR1624872,SRR3183505,SRR3183506,SRR3183507,SRR3183508,SRR3183509,SRR3183510,SRR3183511,SRR3183512,SRR3183513,SRR3183610,SRR3183611,SRR3183612,SRR3183613,SRR3183614,SRR3183615,SRR3183616,SRR3183617,SRR3183618,SRR3183619.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Corynebacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Corynebacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: KWDhT5f8NI_bin.7.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

text: not provided

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Pool Time Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1624855,SRR1624856,SRR1624857,SRR1624858,SRR1624859,SRR1624860,SRR1624861,SRR1624862,SRR1624863,SRR3183592,SRR3183593,SRR3183594,SRR3183595,SRR3183596,SRR3183784,SRR3183785,SRR3183786,SRR3183787.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Rothia sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Rothia sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: dXfDHHuY2Z_bin.2.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v.3.13.0

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

text: metaWRAP v1.2.1

text: not provided

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Pool Time Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3183587,SRR3183588,SRR3183589,SRR3183590,SRR3183591,SRR3183781,SRR3183782,SRR3183783.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Facklamia languida

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Facklamia languida

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: OBR5PB9yZG_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR11300711.

text: human-associated habitat

text: human skin

text: skin

text: China

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Methylobacterium sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Methylobacterium sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: tLhANZLY2g_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR11300717.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Flavobacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: vt5LrF4R0L_bin.1.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR11304755.

text: human-associated habitat

text: human skin

text: skin

text: China

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Hyphomonas sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Hyphomonas sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 6a6OxNV0mT_bin.10.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Paracoccus sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Paracoccus sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: vEOIKfzfxT_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: human-associated habitat

text: human skin

text: skin

text: China

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Brevundimonas sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Brevundimonas sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 2hI1Zh6Hrb_bin.3.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Micrococcus terreus

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Micrococcus terreus

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: AhWuB283n7_bin.6.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: human-associated habitat

text: human skin

text: skin

text: China

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: Paracoccus sanguinis

characteristic: organism

text: Skin Microbial Genome Catalogue

text: Paracoccus sanguinis

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: sIxbx2xYDD_bin.7.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Moraxellaceae bacterium

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Moraxellaceae bacterium

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: I9cwlkZ6sm_bin.8.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Single Run Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1630936.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Corynebacterium sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Corynebacterium sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: FMjKnExf0q_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v.3.13.0

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Single Run Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1633010.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Klebsiella michiganensis

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Klebsiella michiganensis

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Tkd8RiuKPL_bin.9.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1646987.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Pseudoclavibacter sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Pseudoclavibacter sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 7pK1Te7tTF_bin.2.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

text: not provided

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Pool Time Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3183880,SRR3183881,SRR3183882,SRR3184002,SRR3184003,SRR3184004,SRR3184005.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Stenotrophomonas maltophilia

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Stenotrophomonas maltophilia

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: oRT8oxdYnV_bin.3.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Campylobacter sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Campylobacter sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: fTIGlMUJW4_bin.3.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647051.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Corynebacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Corynebacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: WZurEhX608_bin.1.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647075.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Corynebacterium sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Corynebacterium sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: BEzd6FgHns_bin.3.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647118.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: Stenotrophomonas maltophilia

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: Stenotrophomonas maltophilia

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Zyri9ZH5M6_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Propionimicrobium sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Propionimicrobium sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: 9FxmkMbM2y_bin.4.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647129.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Corynebacterium sp.

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Corynebacterium sp.

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Bugu8DmMFf_bin.2.MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIH/NHGRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v.3.13.0

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters

characteristic: binning parameters

text: metaWRAP v1.2.1

characteristic: binning software

characteristic: collection date

text: CheckM v1.1.2

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647136.

text: human-associated habitat

text: human skin

text: skin

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: human skin

characteristic: isolation source

text: human skin metagenome

text: uncultured Corynebacterium sp.

characteristic: organism

text: Skin Microbial Genome Catalogue

text: uncultured Corynebacterium sp.

text: Illumina

text: multi-marker approach

text: Metagenome-assembled genome: EEcRNCFlo3_bin.1.MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIH/NHGRI

text: public

text: metaSPAdes v.3.13.0

text: metaWRAP v1.2.1

characteristic: completeness score

text: CheckM v1.1.2

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR1647139.

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: human skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human skin

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Oceanospirillaceae bacterium

text: Skin Microbial Genome Catalogue

characteristic: project name

characteristic: sample derived from

text: uncultured Oceanospirillaceae bacterium

text: Illumina

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: pLqTxt3hL3_bin.1.MAG