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characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-20220623R12436/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-20220630R12535/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: GR

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GR-Risch-20220610R12328/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC center name

text: public

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-20220616R12261/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-20220618R12266/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC center name

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-Risch-20220621R12447/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-20220703R12646/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-20220707R12678/2022

text: active surveillance in response to outbreak


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Liechtenstein

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-20220628R12527/2022

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-Risch-20220622R12428/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

text: SZ

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SZ-Risch-20220629R12578/2022


E-MTAB-11173:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The University of Manchester

characteristic: INSDC center name

text: public

text: E-MTAB-11173:Sample 1

tag: Namespace:The University of Manchester

text: ArrayExpress

text: Chinese hamster

characteristic: common name

text: Protocols: The development of the isogenic, IgG-producing CHO cell lines was previously described (PMID: 31350616). Recombinant CHO-K1 expressing 353/11 and 2G12 (for short 353/11 and 2G12) were cultivated in triplicate in chemically defined CD-CHO medium (Gibco, #10743029), supplemented with L-glutamine, phenol red and ganciclovir. To ensure identical cultivation conditions and provide best conditions for a nearly identical physiological status of the cells we chose a semi-perfusion process mode in 50 ml vent cap spin tubes in an ISF-X shaker (Kühner, Switzerland) at 37°C, 80% humidity, 5% CO2 and 220 rpm. The seeding density was 5x106 cells per mL. Every 24 hours the cells in culture were counted, mAb titers as well as key metabolites were analyzed and the complete medium was exchanged. Cell pellets for transcriptomics analysis were taken on day six where both cell lines have reached maximum cell density and viability was continuously high. The sampling point was chosen four hours after medium exchange to avoid effects due to medium limitations. To induce ER stress, two additional 353/11 IgG cultures were treated with tunicamycin (TM, 1 µg/mL final concentration) in cultivation medium for four hours before cells were harvested. Cells were washed twice in PBS and stored at -80°C before nucleic acid isolation using TRIzol. Biological replicates (BR) were generated from different cell culture experiments while technical replicates (TR) were generated from the same culture and sampling point with multiple cell pellets Illumina TruSeq Stranded mRNA kit, according to the manufacturer’s protocol.

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Cricetulus griseus

characteristic: organism

text: Cricetulus griseus

text: ovary

characteristic: organism part

text: Cricetulus griseus

text: Sample 1

characteristic: title


E-MTAB-11173:Sample 2

characteristic: External Id

text: The University of Manchester

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11173:Sample 2

text: ArrayExpress

text: Chinese hamster

text: adult

text: Cricetulus griseus

text: Cricetulus griseus

text: ovary

text: Cricetulus griseus

text: Sample 2


E-MTAB-11173:Sample 3

text: The University of Manchester

text: public

characteristic: SRA accession

text: E-MTAB-11173:Sample 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Chinese hamster

text: adult

text: Cricetulus griseus

text: Cricetulus griseus

text: ovary

text: Cricetulus griseus

text: Sample 3


E-MTAB-11173:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The University of Manchester

text: public

text: E-MTAB-11173:Sample 4

text: ArrayExpress

text: Chinese hamster

text: adult

text: Cricetulus griseus

text: Cricetulus griseus

text: ovary

text: Cricetulus griseus

text: Sample 4


E-MTAB-11173:Sample 5

characteristic: ENA-LAST-UPDATE

text: The University of Manchester

characteristic: INSDC center name

text: public

text: E-MTAB-11173:Sample 5

text: ArrayExpress

text: Chinese hamster

text: adult

text: Cricetulus griseus

text: Cricetulus griseus

text: ovary

text: Cricetulus griseus

text: Sample 5


E-MTAB-11173:Sample 6

text: The University of Manchester

text: public

text: E-MTAB-11173:Sample 6

text: ArrayExpress

text: Chinese hamster

characteristic: common name

characteristic: description

text: adult

text: Cricetulus griseus

text: Cricetulus griseus

text: ovary

text: Cricetulus griseus

text: Sample 6


E-MTAB-11173:Sample 7

text: The University of Manchester

text: public

text: E-MTAB-11173:Sample 7

text: ArrayExpress

text: Chinese hamster

text: adult

characteristic: developmental stage

characteristic: genotype

text: Cricetulus griseus

text: Cricetulus griseus

text: ovary

text: Cricetulus griseus

text: Sample 7


E-MTAB-11173:Sample 8

text: The University of Manchester

text: public

text: E-MTAB-11173:Sample 8

text: ArrayExpress

text: Chinese hamster

text: adult

text: Cricetulus griseus

characteristic: organism

text: Cricetulus griseus

text: ovary

characteristic: organism part

text: Cricetulus griseus

text: Sample 8


text: Mexican Hairless Dog (Xoloitzcuintli)

characteristic: Breed

characteristic: External Id

text: The Kennel Club Genetics Centre

text: public

tag: Namespace:The Kennel Club Genetics Centre

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Mexican Hairless Dog (Xoloitzcuintli) WGS

characteristic: title


characteristic: ENA first public

text: University of Zagreb, Faculty of Food Technology and Biotechnology

text: public

characteristic: INSDC status

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: Bacteria-Bakar Bay

characteristic: elevation

text: marine sediment

characteristic: environmental medium

text: Croatia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: sea sediment

characteristic: local environmental context

text: marine sediment metagenome

text: MicroLink

characteristic: project name

text: marine sediment metagenome


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: Bacteria-Cape Kamenjak

characteristic: description

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

characteristic: organism

text: MicroLink

text: marine sediment metagenome


characteristic: ENA first public

text: public

characteristic: INSDC status

text: marine biome

text: Bacteria-Zlarin Island

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome

characteristic: title


text: public

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Bacteria-Vis Island

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

text: Bacteria-Port of Pula

characteristic: elevation

text: marine sediment

characteristic: environmental medium

text: Croatia

characteristic: geographic location (country and/or sea)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

text: Bacteria-Port of Rijeka

text: marine sediment

text: Croatia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: sea sediment

characteristic: local environmental context

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: marine biome

text: Bacteria-Sibenik Bay

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

characteristic: project name

text: marine sediment metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: Bacteria-Port of Split

characteristic: description

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


characteristic: ENA first public

text: public

characteristic: INSDC status

text: marine biome

text: Bacteria-Vranjic Basin

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

characteristic: organism

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Bacteria-Rasa Bay

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome

characteristic: title


text: public

text: marine biome

characteristic: depth

text: Protists-Bakar Bay

characteristic: elevation

text: marine sediment

characteristic: environmental medium

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

text: Protists-Cape Kamenjak

text: marine sediment

text: Croatia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: marine biome

text: Protists-Zlarin Island

text: marine sediment

text: Croatia

text: sea sediment

characteristic: local environmental context

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: Protists-Port of Pula

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

characteristic: project name

text: marine sediment metagenome


characteristic: ENA first public

text: public

characteristic: INSDC status

text: marine biome

text: Protists-Port of Rijeka

characteristic: description

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Protists-Sibenik Bay

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

characteristic: organism

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

characteristic: depth

text: Protists-Port of Split

characteristic: elevation

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome

characteristic: title


text: public

text: marine biome

text: Protists-Vranjic Basin

text: marine sediment

characteristic: environmental medium

text: Croatia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: marine biome

text: Protists-Rasa Bay

text: marine sediment

text: Croatia

characteristic: geographic location (longitude)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: Fungi-Bakar Bay

text: marine sediment

text: Croatia

text: sea sediment

characteristic: local environmental context

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


characteristic: ENA first public

text: public

characteristic: INSDC status

text: marine biome

text: Fungi-Cape Kamenjak

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

characteristic: project name

text: marine sediment metagenome


text: public

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Fungi-Zlarin Island

characteristic: description

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

characteristic: depth

text: Fungi-Port of Pula

characteristic: elevation

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

characteristic: organism

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

text: Fungi-Port of Rijeka

text: marine sediment

characteristic: environmental medium

text: Croatia

characteristic: geographic location (country and/or sea)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: marine biome

text: Fungi-Sibenik Bay

text: marine sediment

text: Croatia

characteristic: geographic location (latitude)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: Fungi-Port of Split

text: marine sediment

text: Croatia

characteristic: geographic location (longitude)

text: sea sediment

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


characteristic: ENA first public

text: public

characteristic: INSDC status

text: marine biome

text: Fungi-Vranjic Basin

text: marine sediment

text: Croatia

text: sea sediment

characteristic: local environmental context

text: marine sediment metagenome

text: MicroLink

text: marine sediment metagenome


text: public

text: marine biome

characteristic: broad-scale environmental context

characteristic: collection date

text: Fungi-Rasa Bay

text: marine sediment

text: Croatia

text: sea sediment

text: marine sediment metagenome

text: MicroLink

characteristic: project name

text: marine sediment metagenome


text: UoC

text: public

text: Axenic culture of S. testaceovaginata

characteristic: description

text: USA

text: Mesotaenium testaceovaginatum

text: Mesotaenium testaceovaginatum

text: Transcriptome of S. testaceovaginata


text: UoC

text: public

text: Axenic culture of Serritaenia sp. (strain OBE.1)

text: Germany

text: Zygnemophyceae sp. 1 SH-2021

characteristic: organism

text: Zygnemophyceae sp. 1 SH-2021

text: Transcriptome of Serritaenia sp. (strain OBE.1)


text: Marie Pust

text: public

text: Cyst fluid (experiment 2)

text: USA

text: human metagenome

text: human metagenome


text: Marie Pust

text: public

text: Blanks (experiment 2)

text: USA

text: human metagenome

text: human metagenome


text: Marie Pust

text: public

text: Cyst fluid (experiment 1)

text: USA

text: human metagenome

text: human metagenome


text: Marie Pust

text: public

text: Blanks (experiment 1)

text: USA

text: human metagenome

text: human metagenome


text: ICHF

text: public

text: not collected

text: not applicable

text: Escherichia coli 83972

text: Escherichia coli 83972


text: Laboratory of Microbiology, UZ Brussel

text: public

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: F. Crombe, UZ Brussel

text: E. coli

characteristic: common name

text: Whole genome sequencing data uploaded by EnteroBase user

text: Belgium

text: Human

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

text: UMR 1137 IAME

text: public

text: E. coli

text: France

characteristic: geographic location (country and/or sea)

text: homo sapiens

characteristic: host scientific name

text: Faeces

characteristic: isolate

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2001-10-24-i ST452/149 O81:H27 fimH542

characteristic: title


text: UMR 1137 IAME

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2001-10-24-j ST452/149 O81:H27 fimH542


characteristic: ENA first public

text: UMR 1137 IAME

text: public

characteristic: INSDC status

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2002-05-23-i ST452/149 O81:H27 fimH542


text: UMR 1137 IAME

text: public

characteristic: collection date

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2002-05-23-j ST452/149 O81:H27 fimH542


text: UMR 1137 IAME

text: public

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2002-09-04-c ST452/149 O81:H27 fimH542


text: UMR 1137 IAME

text: public

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2002-09-04-d ST452/149 O81:H27 fimH542


text: UMR 1137 IAME

text: public

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2002-09-04-i ST452/149 O81:H27 fimH542


text: UMR 1137 IAME

text: public

text: E. coli

text: France

text: homo sapiens

text: Faeces

text: ED Gut

text: Escherichia coli

text: Escherichia coli

text: ED2002-09-04-j ST452/149 O81:H27 fimH542


text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

text: public

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:University of Veterinary Medicine Vienna / Food Microbiology

text: hot water_sausage making room_supply for machines

characteristic: description

text: Austria

characteristic: geographic location (country and/or sea)

text: meat processing plant

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: water 5

characteristic: title


text: University of Veterinary Medicine Vienna / Food Microbiology

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: cold water_sausage making room_supply for machines

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 4


text: public

text: cold water_neighbor facility

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 1


text: public

text: cold water_convenience room_water tap

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 6


text: public

text: hot water_cutting room_sattelite for cleaning

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 12


text: public

text: hot water_delivery room

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 9


text: public

text: cold water_delivery room

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 8


text: public

text: cold water_cutting room

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 13


text: public

text: hot water_cutting room

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 9


text: public

text: cold water_sausage making room_supply for sausage line

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 3


text: public

text: water_cold_tumbler room_directly used for food production

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 10


text: public

text: cold water_main water entry

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 2


text: public

text: cold water_convenience room:burger machine

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 7


text: public

text: cold water_tiling room

text: Austria

text: meat processing plant

text: freshwater metagenome

text: freshwater metagenome

text: water 11


text: public

text: water from MilliQ-aperature

text: Austria

text: laboratory

text: metagenome

text: metagenome

text: NTC1_water control


text: public

text: DNA extraction kit extraction control

text: Austria

text: laboratory

text: metagenome

text: metagenome

text: negative control 3


text: public

text: biofilm in water hose room: sausage making room location: sausage line

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 1


text: public

text: biofilm in water hose room: sausage making room location: water tap

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 2


text: public

text: biofilm in water hose room: sausage making room location: conveyer

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 3


text: public

text: biofilm in water hose room: convienience room location: water tap

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 4


text: public

text: biofilm in water hose room: delivery location: hose for tiler at delivery

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 5


text: public

text: biofilm in water hose room: tumbler room location: hose for getting water

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 6


text: public

text: reagents for biofilm sampling

text: Austria

text: laboratory

text: metagenome

text: metagenome

text: NTC2_water hose NTC


text: public

text: biofilm in water hose room: tiling room location: plating machine

text: Austria

text: meat processing plant

text: biofilm metagenome

text: biofilm metagenome

text: water hose 7


text: public

text: reagents for biofilm sampling

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: NTC3_water hose NTC


text: public

text: Non-Food Contact Surface_cutting room_nozzle of satellite

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 7


text: public

text: DNA extraction kit extraction control

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: negative control 2


text: public

text: Food Contact Surface_sausage making room_table right

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: envrionmental sample 3


text: public

text: convenience room

text: Austria

text: meat processing plant

text: air metagenome

text: air metagenome

text: air control


text: public

text: Food Contact Surface_cutting room_working table

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 10


text: public

text: Food Contact Surface_tiling room_conveyor

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 6


text: University of Veterinary Medicine Vienna / Food Microbiology

text: public

text: Food Contact Surface_sausage making room_working table left

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 2


text: public

text: control

text: Austria

text: meat processing plant

text: metagenome

text: metagenome


text: public

text: control laboratory

text: Austria

text: laboratory

text: metagenome

text: metagenome

text: environmental swab NTC


text: public

text: Food Contact Surface_convenience room_steaker

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 4


text: public

text: Food Contact Surface_delivery room_table meat packaging

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 5


text: public

text: negative control

text: Austria

text: laboratory

text: metagenome

text: metagenome

text: NTC_COPAN swab


text: public

text: Food Contact Surface_sausage making room_filler inside

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 1


text: public

text: Non-Food Contact Surface_cutting room_cleaned wall

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 8


text: public

text: Non-Food Contact Surface_cutting room_wall

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 9


text: public

text: Non-Food Contact Surface_cutting room_table bottom

text: Austria

text: meat processing plant

text: metagenome

text: metagenome

text: environmental sample 11


text: public

text: DNA extraction kit extraction control

text: Austria

text: laboratory

text: metagenome

text: metagenome

text: negative control 1


E-MTAB-11285:Sample 11

text: public

text: E-MTAB-11285:Sample 11

tag: Namespace:Research Institute of Internal Medicine, Oslo University Hospital

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: Protocols: After dislocation of the neck under isoflurane anaesthesia, the pituitary gland was harvested, frozen on liquid nitrogen and stored at -80℃ Total RNA was isolated from the tissues (Qiagen AllPrep ID80224) The library was constructed with mRNA enrichment method.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

characteristic: strain

text: Sample 11


E-MTAB-11285:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Research Institute of Internal Medicine, Oslo University Hospital

characteristic: INSDC center name

text: public

text: E-MTAB-11285:Sample 12

text: ArrayExpress

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 12


E-MTAB-11285:Sample 13

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11285:Sample 13

text: ArrayExpress

text: Norway rat

characteristic: description

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 13


E-MTAB-11285:Sample 14

text: public

characteristic: INSDC status

text: E-MTAB-11285:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 14

characteristic: title


E-MTAB-11285:Sample 15

text: public

text: E-MTAB-11285:Sample 15

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 15


E-MTAB-11285:Sample 16

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11285:Sample 16

text: ArrayExpress

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

characteristic: strain

text: Sample 16


E-MTAB-11285:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11285:Sample 17

text: ArrayExpress

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 17


E-MTAB-11285:Sample 18

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11285:Sample 18

text: ArrayExpress

text: Norway rat

characteristic: description

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 18


E-MTAB-11285:Sample 19

text: public

characteristic: INSDC status

text: E-MTAB-11285:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 19

characteristic: title


E-MTAB-11285:Sample 20

text: public

text: E-MTAB-11285:Sample 20

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 20


E-MTAB-11285:Sample 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11285:Sample 1

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

characteristic: environmental stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

characteristic: strain

text: Sample 1


E-MTAB-11285:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11285:Sample 10

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 10


E-MTAB-11285:Sample 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11285:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

characteristic: description

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 2


E-MTAB-11285:Sample 3

text: public

text: E-MTAB-11285:Sample 3

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: adult

characteristic: developmental stage

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 3

characteristic: title


E-MTAB-11285:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11285:Sample 4

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

text: Sample 4


E-MTAB-11285:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11285:Sample 5

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

characteristic: strain

text: Sample 5


E-MTAB-11285:Sample 6

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11285:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 6


E-MTAB-11285:Sample 7

text: public

text: E-MTAB-11285:Sample 7

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 7


E-MTAB-11285:Sample 8

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11285:Sample 8

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 8

characteristic: title


E-MTAB-11285:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11285:Sample 9

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

text: Sample 9


text: CRICK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of untreated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: HEK293T_Media_Untransfected_Cytoplasm_rep1

text: Untransfected

characteristic: transfection

text: Media

characteristic: treatment


text: CRICK

text: public

characteristic: Submitter Id

text: HEK 293T

text: Nucleus

text: human

characteristic: common name

text: Nuclear fraction of untreated untransfected HEK 293T cells

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: HEK293T_Media_Untransfected_Nucleus_rep1

text: Untransfected

text: Media


characteristic: ENA-CHECKLIST

text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of untreated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: Media


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of untreated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

characteristic: title

text: Control

text: Media


characteristic: ENA-FIRST-PUBLIC

text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of untreated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: Media


characteristic: ENA-LAST-UPDATE

text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of untreated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: Media


characteristic: External Id

text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of IFNb treated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: HEK293T_IFNb_Untransfected_Cytoplasm_rep1

text: Untransfected

text: IFNb


text: CRICK

characteristic: INSDC center name

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of IFNb treated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: Untransfected

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of IFNb treated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of IFNb treated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of IFNb treated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of IFNb treated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Homo sapiens

text: Homo sapiens

text: HEK293T_Media_Untransfected_Cytoplasm_rep2

text: Untransfected

text: Media


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Homo sapiens

text: Homo sapiens

text: HEK293T_Media_Untransfected_Nucleus_rep2

text: Untransfected

text: Media


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of LMB treated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: HEK293T_LMB_Untransfected_Cytoplasm_rep2

text: Untransfected

text: LMB


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of LMB treated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: Untransfected

text: LMB


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Homo sapiens

text: Homo sapiens

text: HEK293T_IFNb_Untransfected_Cytoplasm_rep2

text: Untransfected

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of untreated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: HEK293T_Media_Untransfected_Cytoplasm_rep3

text: Untransfected

text: Media


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of untreated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: HEK293T_Media_Untransfected_Nucleus_rep3

text: Untransfected

text: Media


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Homo sapiens

text: Homo sapiens

text: HEK293T_LMB_Untransfected_Cytoplasm_rep3

text: Untransfected

text: LMB


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of untreated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: Media


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of untreated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: Media


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of untreated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: Media


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of untreated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: Media


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of IFNb treated untransfected HEK 293T cells

text: Homo sapiens

text: Homo sapiens

text: HEK293T_IFNb_Untransfected_Cytoplasm_rep3

text: Untransfected

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of IFNb treated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of IFNb treated HEK 293T cells transfected with a control plasmid

text: Homo sapiens

text: Homo sapiens

text: Control

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Cytoplasm

text: human

text: Cytoplasmic fraction of IFNb treated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: IFNb


text: CRICK

text: public

text: HEK 293T

text: Nucleus

text: human

text: Nuclear fraction of IFNb treated HEK 293T cells transfected with an ORF6 containing plasmid

text: Homo sapiens

text: Homo sapiens

text: IFNb


E-MTAB-11290:Sample 10

text: Research Institute of Internal Medicine, Oslo University Hospital

text: public

text: E-MTAB-11290:Sample 10

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Protocols: After dislocation of the neck under isoflurane anaesthesia, the pituitary gland was harvested, frozen on liquid nitrogen and stored at -80℃ Total DNA was isolated from the tissues (Qiagen AllPrep, Cat.No.80224) The library was constructed with Accel-NGS® Methyl-Seq DNA Library Kit (Swift Biosciences,Cat.No.30096).

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

characteristic: strain

text: Sample 10


E-MTAB-11290:Sample 6

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11290:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 6


E-MTAB-11290:Sample 7

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11290:Sample 7

text: ArrayExpress

text: Norway rat

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 7

characteristic: title


E-MTAB-11290:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11290:Sample 8

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: adult

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 8


E-MTAB-11290:Sample 9

text: public

text: E-MTAB-11290:Sample 9

text: ArrayExpress

text: Norway rat

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

text: Sample 9


E-MTAB-11290:Sample 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11290:Sample 1

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

characteristic: environmental stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

characteristic: strain

text: Sample 1


E-MTAB-11290:Sample 2

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11290:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

characteristic: common name

characteristic: description

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 2

characteristic: title


E-MTAB-11290:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11290:Sample 3

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: adult

characteristic: developmental stage

text: resident-intruder paradigm stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 3


E-MTAB-11290:Sample 4

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11290:Sample 4

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

text: Sample 4


E-MTAB-11290:Sample 5

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11290:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: resident-intruder paradigm stress

characteristic: environmental stress

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pituitary gland

text: Rattus norvegicus

text: male

text: Sprague Dawley

characteristic: strain

text: Sample 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VIB-KU Leuven Center for Cancer Biology

text: public

tag: Namespace:VIB-KU Leuven Center for Cancer Biology

text: ArrayExpress

text: hiPSC reporter MAFB:mTagBFP2

text: kidney organoid

text: human

characteristic: common name

text: Protocols: Kidney organoids were generated from human induced pluripotent stem cells using previously published protocols (van den Berg et al., Stem Cell Reports 2018). On d7+12 of differentiation, organoids were either transplanted inside the coelomic cavity of day 4 chicken embryos (White Leghorn eggs (sp: Gallus gallus domesticus) have been used), or maintained in vitro. One day (day 7+13) and 8 days (d7+20) after transplantation, transplanted organoids and respective untransplanted (in vitro) controls were dissociated to single cells using a collagenase I buffer consisting of 600U ml-1 collagenase Type I (Worthington) and 0,75U ml-1 DNAse (Sigma Aldrich) in HBSS with calcium and magnesium (Thermo Fisher Scientific) followed by a TrypLE buffer consisting of 5U ml-1 DNAse I (Sigma Aldrich) and 4µg ml-1 heparin (Sigma Aldrich) in 80% TrypLE select 10x (Thermo Fisher Scientific) in DPBS (Thermo Fisher Scientific). After dissociation, cells were resuspended in 1mL PBS + 0,1% BSA. All cells from organoids from the same condition were pooled (d7+13 untransplanted: 94 organoids, transplanted: 75 bisected organoids (transplanted in 150 chicken embryos); d7+20 untransplanted: 95 organoids, transplanted: 47 bisected organoids (transplanted in 93 chicken embryos)). Nucleic acid extraction was performed in single cells using the Chromium Single Cell 3’ v3 Library, Gel Bead & Multiplex Kit and Chip Kit (10x Genomics) according to manufacturer’s instructions. The single cell suspensions obtained from dissociated kidney organoids were converted to barcoded scRNA-seq libraries using the Chromium Single Cell 3’ Library, Gel Bead & Multiplex Kit and Chip Kit (10x Genomics). Samples were processed with 10x Genomics’ V3 barcoding chemistry. Cells from each sample were treated with the same master mix and in the same reaction vessel, by processing every single sample in a single well of a PCR plate.

characteristic: description

text: neonate

text: normal

characteristic: disease

text: in vitro cultured

characteristic: growth condition

text: pool of 94 organoids

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prepuce of penis

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

text: VIB-KU Leuven Center for Cancer Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: hiPSC reporter MAFB:mTagBFP2

text: kidney organoid

text: human

text: neonate

characteristic: developmental stage

text: normal

text: in vivo transplanted into coelomic cavity of Gallus gallus domesticus embryos

text: pool of 150 organoids

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prepuce of penis

characteristic: organism part

text: induced pluripotent stem cell

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: VIB-KU Leuven Center for Cancer Biology

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hiPSC reporter MAFB:mTagBFP2

text: kidney organoid

text: human

text: neonate

text: normal

text: in vitro cultured

text: pool of 95 organoids

text: Homo sapiens

text: Homo sapiens

text: prepuce of penis

text: induced pluripotent stem cell

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: VIB-KU Leuven Center for Cancer Biology

text: public

text: ArrayExpress

text: hiPSC reporter MAFB:mTagBFP2

text: kidney organoid

text: human

characteristic: common name

characteristic: description

text: neonate

text: normal

characteristic: disease

characteristic: growth condition

text: pool of 93 organoids

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prepuce of penis

text: induced pluripotent stem cell

text: Homo sapiens

text: male


270_Anaulacomera wallace

characteristic: ENA first public

characteristic: External Id

text: Castleton University

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: 270_Anaulacomera wallace

tag: Namespace:Castleton University

text: Nectandra lineata in digestive tract of Anaulacomera wallace

text: Anaulacomera sp. 'wallace'

text: Anaulacomera sp. 'wallace'

text: insect digestive tract

characteristic: title


316_Anaulacomera wallace

characteristic: ENA-CHECKLIST

text: Castleton University

text: public

text: 316_Anaulacomera wallace

text: Anaulacomera sp. 'wallace'

text: Anaulacomera sp. 'wallace'

text: insect digestive tract


284_Anaulacomera furcata

text: Castleton University

text: public

text: 284_Anaulacomera furcata

text: Trema micranthain digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


217_Anaulacomera furcata

text: Castleton University

text: public

text: 217_Anaulacomera furcata

text: Inga sp.in digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


310_Anaulacomera furcata

text: Castleton University

text: public

text: 310_Anaulacomera furcata

text: Swartzia simplexin digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


1594_Anaulacomera furcata

text: Castleton University

text: public

text: 1594_Anaulacomera furcata

text: Tachigali versicolorin digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


1_Anaulacomera furcata

text: Castleton University

text: public

text: 1_Anaulacomera furcata

text: Nectandra lineata in digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


1575_Anaulacomera furcata

text: Castleton University

text: public

text: 1575_Anaulacomera furcata

text: Cupania cinereain digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


1484_Anaulacomera furcata

text: Castleton University

text: public

text: 1484_Anaulacomera furcata

text: Pouteria fossicolain digestive tract of Anaulacomera furcata

text: Anaulacomera furcata

text: Anaulacomera furcata

text: insect digestive tract


1481_Anaulacomera spatulata

text: Castleton University

text: public

text: 1481_Anaulacomera spatulata

text: Inga goldmaniiin digestive tract of Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


1513_Anaulacomera spatulata

text: Castleton University

text: public

text: 1513_Anaulacomera spatulata

text: Inga punctatain digestive tract of Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


228_Anaulacomera spatulata

text: Castleton University

text: public

text: 228_Anaulacomera spatulata

text: Fabaceaein digestive tract of Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


183_Anaulacomera spatulata

text: Castleton University

text: public

text: 183_Anaulacomera spatulata

text: Nectandra lineata in digestive tract of Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


226_Anaulacomera spatulata

text: Castleton University

text: public

text: 226_Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


229_Anaulacomera spatulata

text: Castleton University

text: public

text: 229_Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


324_Anaulacomera spatulata

text: Castleton University

text: public

text: 324_Anaulacomera spatulata

text: Gustavia superbain digestive tract of Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


184_Anaulacomera spatulata

text: Castleton University

text: public

text: 184_Anaulacomera spatulata

text: Cupania rufescensin digestive tract of Anaulacomera spatulata

text: Anaulacomera spatulata

text: Anaulacomera spatulata

text: insect digestive tract


1604_Arota festae

text: Castleton University

text: public

text: 1604_Arota festae

text: Anacardium excelsumin digestive tract of Arota festae

text: Arota festae

text: Arota festae

text: insect digestive tract


4003_Arota festae

text: Castleton University

text: public

text: 4003_Arota festae

text: Inga spin digestive tract of Arota festae

text: Arota festae

text: Arota festae

text: insect digestive tract


4040_Arota festae

text: Castleton University

text: public

text: 4040_Arota festae

text: Malpighia romeroanain digestive tract of Arota festae

text: Arota festae

text: Arota festae

text: insect digestive tract


1318_Ceraia mytra

text: Castleton University

text: public

text: 1318_Ceraia mytra

text: Jacaranda copaiain digestive tract of Ceraia mytra

text: Ceraia mytra

text: Ceraia mytra

text: insect digestive tract


4053_Dolichocercus latipennis

text: Castleton University

text: public

text: 4053_Dolichocercus latipennis

text: Maytenus schippiiin digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4034_Dolichocercus latipennis

text: Castleton University

text: public

text: 4034_Dolichocercus latipennis

text: Maytenus schippii in digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


32_Dolichocercus latipennis

text: Castleton University

text: public

text: 32_Dolichocercus latipennis

text: Nectandra lineata in digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4054_Dolichocercus latipennis

text: Castleton University

text: public

text: 4054_Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4055_Dolichocercus latipennis

text: Castleton University

text: public

text: 4055_Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4061_Dolichocercus latipennis

text: Castleton University

text: public

text: 4061_Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4086_Dolichocercus latipennis

text: Castleton University

text: public

text: 4086_Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4087_Dolichocercus latipennis

text: Castleton University

text: public

text: 4087_Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


317_Dolichocercus latipennis

text: Castleton University

text: public

text: 317_Dolichocercus latipennis

text: Ocotea spin digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4045_Dolichocercus latipennis

text: Castleton University

text: public

text: 4045_Dolichocercus latipennis

text: Malvaceaein digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


4038_Dolichocercus latipennis

text: Castleton University

text: public

text: 4038_Dolichocercus latipennis

text: Guarea sp. in digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


82_Dolichocercus latipennis

text: Castleton University

text: public

text: 82_Dolichocercus latipennis

text: Heisteria concinnain digestive tract of Dolichocercus latipennis

text: Dolichocercus latipennis

text: Dolichocercus latipennis

text: insect digestive tract


1263_Euceraia insignis

text: Castleton University

text: public

text: 1263_Euceraia insignis

text: Anacardium excelsumin digestive tract of Euceraia insignis

text: Euceraia insignis

text: Euceraia insignis

text: insect digestive tract


4083_Euceraia insignis

text: Castleton University

text: public

text: 4083_Euceraia insignis

text: Euceraia insignis

text: Euceraia insignis

text: insect digestive tract


1251_Euceraia insignis

text: Castleton University

text: public

text: 1251_Euceraia insignis

text: Cupania spin digestive tract of Euceraia insignis

text: Euceraia insignis

text: Euceraia insignis

text: insect digestive tract


4005_Hyperphrona irregularis

text: Castleton University

text: public

text: 4005_Hyperphrona irregularis

text: Inga sp.in digestive tract of Hyperphrona irregularis

text: Hyperphrona irregularis

text: Hyperphrona irregularis

text: insect digestive tract


4073_Lamprophyllum micans

text: Castleton University

text: public

text: 4073_Lamprophyllum micans

text: Anacardium excelsumin digestive tract of Lamprophyllum micans

text: Lamprophyllum micans

text: Lamprophyllum micans

text: insect digestive tract


1243_Lamprophyllum micans

text: Castleton University

text: public

text: 1243_Lamprophyllum micans

text: Lamprophyllum micans

text: Lamprophyllum micans

text: insect digestive tract


265_Lamprophyllum micans

text: Castleton University

text: public

text: 265_Lamprophyllum micans

text: Nectandra lineata in digestive tract of Lamprophyllum micans

text: Lamprophyllum micans

text: Lamprophyllum micans

text: insect digestive tract


4067_Lamprophyllum micans

text: Castleton University

text: public

text: 4067_Lamprophyllum micans

text: Lamprophyllum micans

text: Lamprophyllum micans

text: insect digestive tract


4027_Lamprophyllum micans

text: Castleton University

text: public

text: 4027_Lamprophyllum micans

text: Chimarrhis parviflora in digestive tract of Lamprophyllum micans

text: Lamprophyllum micans

text: Lamprophyllum micans

text: insect digestive tract


1528_Microcentrum polka

text: Castleton University

text: public

text: 1528_Microcentrum polka

text: Inga sp.in digestive tract of Microcentrum polka

text: Microcentrum sp. 'polka'

text: Microcentrum sp. 'polka'

text: insect digestive tract


1553_Microcentrum championi

text: Castleton University

text: public

text: 1553_Microcentrum championi

text: Spondias radlkoferiin digestive tract of Microcentrum championi

text: Microcentrum sp. 'polka'

text: Microcentrum sp. 'polka'

text: insect digestive tract


377_Microcentrum championi

text: Castleton University

text: public

text: 377_Microcentrum championi

text: Ocotea puberulain digestive tract of Microcentrum championi

text: Microcentrum sp. 'polka'

text: Microcentrum sp. 'polka'

text: insect digestive tract


1423_Microcentrum championi

text: Castleton University

text: public

text: 1423_Microcentrum championi

text: Luehea seemanniiin digestive tract of Microcentrum championi

text: Microcentrum sp. 'polka'

text: Microcentrum sp. 'polka'

text: insect digestive tract


1567_Microcentrum championi

text: Castleton University

text: public

text: 1567_Microcentrum championi

text: Cupania cinereain digestive tract of Microcentrum championi

text: Microcentrum sp. 'polka'

text: Microcentrum sp. 'polka'

text: insect digestive tract


368_Montezumina bradleyi

text: Castleton University

text: public

text: 368_Montezumina bradleyi

text: Inga spin digestive tract of Montezumina bradleyi

text: Montezumina bradleyi bradleyi

text: Montezumina bradleyi bradleyi

text: insect digestive tract


375_Montezumina bradleyi

text: Castleton University

text: public

text: 375_Montezumina bradleyi

text: Montezumina bradleyi bradleyi

text: Montezumina bradleyi bradleyi

text: insect digestive tract


90_Montezumina bradleyi

text: Castleton University

text: public

text: 90_Montezumina bradleyi

text: Inga sp.in digestive tract of Montezumina bradleyi

text: Montezumina bradleyi bradleyi

text: Montezumina bradleyi bradleyi

text: insect digestive tract


79_Montezumina bradleyi

text: Castleton University

text: public

text: 79_Montezumina bradleyi

text: Nectandra lineata in digestive tract of Montezumina bradleyi

text: Montezumina bradleyi bradleyi

text: Montezumina bradleyi bradleyi

text: insect digestive tract


281_Montezumina bradleyi

text: Castleton University

text: public

text: 281_Montezumina bradleyi

text: Montezumina bradleyi bradleyi

text: Montezumina bradleyi bradleyi

text: insect digestive tract