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characteristic: geographic location (country and/or sea)

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text: National Virus Reference Laboratory

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text: Europe / Ireland / Wexford

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characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-ecS22IRL00360485/2022

characteristic: virus identifier


text: public

characteristic: NCBI Accession ID

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: TITLE

text: not provided

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text: not provided

characteristic: collector name

text: Hepacivirus C

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Lisbon

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text: Hepacivirus C

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text: not provided

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text: not provided

text: Hepacivirus C

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text: not provided

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text: not provided

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text: Hepacivirus C

characteristic: organism

text: Hepacivirus C


text: public

characteristic: NCBI Accession ID

characteristic: TITLE

text: not provided

characteristic: collection year

text: not provided

characteristic: collector name

text: Hepacivirus C

characteristic: common name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Lisbon

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

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text: Homo sapiens

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text: not provided

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text: not provided

text: Plasma

text: Hepacivirus C

text: Hepacivirus C

text: 1a and 3a (Mixed infection)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

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text: public

text: ena-upload-cli v0.6.0 @ Galaxy

tag: Namespace:Health Board of Estonia

text: The Health Board of Estonia

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Heleri Inno

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

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text: Northern Estonia

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text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance

characteristic: title


text: Health Board of Estonia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

text: Northern Estonia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host sex


text: Health Board of Estonia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

text: Western Estonia

characteristic: host age

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: Western Estonia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

text: human

text: not provided

text: Homo sapiens

text: female

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: Northern Estonia

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Central Estonia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: host sex


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Southern Estonia

characteristic: host age

text: human

text: diseased

text: Homo sapiens

text: male

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Central Estonia

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: host sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: North-Eastern Estonia

characteristic: host age

text: human

text: diseased

text: Homo sapiens

text: female

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

text: human

text: not provided

text: Homo sapiens

text: male

characteristic: host sex


text: Health Board of Estonia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.0 @ Galaxy

characteristic: Submitter Id

text: The Health Board of Estonia

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Northern Estonia

characteristic: host age

text: human

text: healthy

text: Homo sapiens

text: female

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Health Board of Estonia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-upload-cli v0.6.0 @ Galaxy

text: The Health Board of Estonia

text: Estonia

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism


text: Karolinska University Hospitall

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: HumanPancreas

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BOLOGNA

text: public

tag: Namespace:UNIVERSITY OF BOLOGNA

text: DNA extracted from Honey

text: Italy

characteristic: geographic location (country and/or sea)

text: honey metagenome

text: honey metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BOLOGNA

text: public

text: honey bee

text: DNA of a single bee

text: Italy

text: Apis mellifera

text: Apis mellifera


text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: honey bee

text: DNA pool (35 bees)

text: Italy

text: Apis mellifera

text: Apis mellifera


text: STOCKHOLM UNIVERSITY

text: public

tag: Namespace:STOCKHOLM UNIVERSITY

text: Spain

text: Santa Maria de Trassierra, Córdoba

characteristic: geographic location (region and locality)

text: 37°55'55.1N, 4°52'59.9W

text: Linum tenue

text: Linum tenue

text: leaf


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Wales

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IHU - Mediterranee Infection

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:IHU - Mediterranee Infection

text: Candidatus Rickettsia senegalensis was isolated from Ctenocephalides felis cat fleas in senegal as part of a epidemiologic study

text: Ctenocephalides felis cat fleas

text: Candidatus Rickettsia senegalensis

text: Candidatus Rickettsia senegalensis

characteristic: strain

text: Rickettsia senegalensis genome


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR BIOLOGY

characteristic: Submitter Id

text: Marco Podobnik

text: zebrafish

characteristic: common name

text: Larval tissue (without head) from Danio rerio

characteristic: description

text: Larval

text: Marco Podobnik

text: Danio rerio

characteristic: organism

text: Danio rerio

text: not provided

characteristic: sex

text: whole body without head


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MAX PLANCK INSTITUTE FOR BIOLOGY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Marco Podobnik

text: Larval tissue (without head) from Danio aesculapii

text: Larval

text: Marco Podobnik

text: Danio aesculapii

text: Danio aesculapii

text: not provided

text: whole body without head

characteristic: title


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Larval tissue (without head) from Danio aff. kyathit

text: Larval

text: Marco Podobnik

text: Danio aff. kyathit ZRC 52628

text: Danio aff. kyathit ZRC 52628

text: not provided

text: whole body without head


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: pearl danio

text: Larval tissue (without head) from Danio albolineatus

text: Larval

text: Marco Podobnik

text: Danio albolineatus

text: Danio albolineatus

text: not provided

text: whole body without head


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: zebrafish

text: Metamorphic tissue (without head) from Danio rerio

text: Metamorphic

text: Marco Podobnik

text: Danio rerio

text: Danio rerio

text: not provided

text: whole body without head


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Metamorphic tissue (without head) from Danio aesculapii

text: Metamorphic

text: Marco Podobnik

text: Danio aesculapii

text: Danio aesculapii

text: not provided

text: whole body without head


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Metamorphic tissue (without head) from Danio aff. kyathit

text: Metamorphic

text: Marco Podobnik

text: Danio aff. kyathit ZRC 52628

text: Danio aff. kyathit ZRC 52628

text: not provided

text: whole body without head


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: pearl danio

text: Metamorphic tissue (without head) from Danio albolineatus

text: Metamorphic

text: Marco Podobnik

text: Danio albolineatus

text: Danio albolineatus

text: not provided

text: whole body without head


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: zebrafish

text: Postmetamorphic posterior tissue including caudal fin from Danio rerio

text: Postmetamorphic

text: Marco Podobnik

text: Danio rerio

text: Danio rerio

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Postmetamorphic posterior tissue including caudal fin from Danio aesculapii

text: Postmetamorphic

text: Marco Podobnik

text: Danio aesculapii

text: Danio aesculapii

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Postmetamorphic posterior tissue including caudal fin from Danio aff. kyathit

text: Postmetamorphic

text: Marco Podobnik

text: Danio aff. kyathit ZRC 52628

text: Danio aff. kyathit ZRC 52628

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: pearl danio

text: Postmetamorphic posterior tissue including caudal fin from Danio albolineatus

text: Postmetamorphic

text: Marco Podobnik

text: Danio albolineatus

text: Danio albolineatus

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: zebrafish

text: Adult posterior tissue including caudal fin from Danio rerio

text: Adult

text: Marco Podobnik

text: Danio rerio

text: Danio rerio

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Adult posterior tissue including caudal fin from Danio aesculapii

text: Adult

text: Marco Podobnik

text: Danio aesculapii

text: Danio aesculapii

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: Adult posterior tissue including caudal fin from Danio aff. kyathit

text: Adult

text: Marco Podobnik

text: Danio aff. kyathit ZRC 52628

text: Danio aff. kyathit ZRC 52628

text: not provided

text: posterior trunk including caudal fin


text: MAX PLANCK INSTITUTE FOR BIOLOGY

text: public

text: Marco Podobnik

text: pearl danio

text: Adult posterior tissue including caudal fin from Danio albolineatus

text: Adult

text: Marco Podobnik

text: Danio albolineatus

text: Danio albolineatus

text: not provided

text: posterior trunk including caudal fin


text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human host

text: metagenome

text: metagenome


ONT_negative control

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OXFORD

characteristic: INSDC center name

text: public

text: ONT_negative control

text: United Kingdom

text: diseased

text: Homo sapiens

text: Human host

text: metagenome

text: metagenome


ONT_healthy control (HC149)

text: UNIVERSITY OF OXFORD

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ONT_healthy control (HC149)

text: United Kingdom

text: healthy

text: Homo sapiens

text: Human host

text: metagenome

text: metagenome


text: Genetech

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast of dermis and leukocyte

text: house mouse

characteristic: common name

text: Protocols: For subcutaneous KPR tumors, KPR cells were trypsinized, filtered, counted, and resuspended in a 1:1 mixture of Hanks’s buffered saline solution and phenol-red-free Matrigel (Corning) at a concentration of 1x106 cells/ml. For all genotypes of mice used, age and sex-matched 6-12-week-old mice were inoculated subcutaneously in the right unilateral flank with 1x105 KPR tumor cells. Flank skin hair was shaved prior to implantation. Tumor volumes were measured and calculated 2-3 times per week using the modified ellipsoid formula: ½ × (length × width2). Tumors >1000mm3 were considered progressed and animals were removed from the study. Similarly, animals whose tumors ulcerated greater than 5mm were removed from study. From the remaining mice tissue was harvested 21 days post tumor implantation. Tumors were collected, weighed and minced into small pieces. To isolate naive flank skin, hair was shaved, adipose tissue was removed and skin tissue was minced. All tissues were subsequently enzymatically digested using a cocktail of dispase (Life Technologies, Carlsbad, CA), collagenase P and DNaseI (Roche, Penzberg, Germany) for 45 min at 37°C, to obtain a single cell suspension. Cells were counted using a Vi-CELL XR (Beckman Coulter, Brea, CA). For cytokine staining, cell suspensions were stimulated with eBioscience Cell Stimulation Cocktail plus protein transport inhibitors (cat. 00-4975-93) resuspended in RPMI with 10% FBS plus 2 mmol/L l-glutamine and 2-Mercaptoethanol for 2 hours at 37°C.Cells were labelled with monoclonal antibodies purchased from BioLegend. Samples were enriched for CD24-CD45- stromal cells and CD45+ immune cells. Sorted cells were loaded onto a 10x Chromium Chip using reagents from the Chromium Single Cell 3’ Library Kit (10x Genomics) according to the manufacturer’s protocol. Amplified cDNA was used for 3’ RNA-seq library generation, RNA-seq libraries were prepared following the manufacturer’s user guide (10x Genomics).

text: adult

characteristic: developmental stage

text: cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: injected subcutaneous with KPR cells

characteristic: growth condition

text: CD24-CD45- and CD45+

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: skin of body

characteristic: organism part

text: Mus musculus

text: WT


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Genetech

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: fibroblast of dermis and leukocyte

text: house mouse

characteristic: description

text: adult

text: cancer

text: injected subcutaneous with KPR cells

text: CD24-CD45- and CD45+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: skin of body

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

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