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text: University of Oxford

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text: public

tag: Namespace:Regional Public Health Authority with the seat in Košice, Slovakia

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text: ena-upload-cli v0.6.0 @ Galaxy

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text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Heleri Inno

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E-MTAB-12128:Sample 1

characteristic: ENA-CHECKLIST

text: MASSEY UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: E-MTAB-12128:Sample 1

tag: Namespace:MASSEY UNIVERSITY

text: ArrayExpress

characteristic: broker name

text: Protocols: Cell harvested at mid-exponential phase unless otherwise specified (e.g. at 96 hours) Minimal glucose media (M9) or rich media (LB) grown at cold stress (25C), no stress (37C), or heat stress (42C) Promega Wizard kit Oxford Nanopore RBK-004

text: cold stress (25 oC)

characteristic: environmental stress

text: minimal media

characteristic: growth condition

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: whole organism

characteristic: organism part

text: Escherichia coli

text: natural isolate

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-12128:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 10


E-MTAB-12128:Sample 11

characteristic: ENA-CHECKLIST

text: MASSEY UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12128:Sample 11

text: ArrayExpress

text: heat stress (42 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 11


E-MTAB-12128:Sample 12

text: MASSEY UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12128:Sample 12

text: ArrayExpress

text: 96 hours minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 12


E-MTAB-12128:Sample 13

text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12128:Sample 13

text: ArrayExpress

text: no temperature stress (37 oC)

text: rich media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 13


E-MTAB-12128:Sample 14

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 14

text: ArrayExpress

characteristic: broker name

text: no temperature stress (37 oC)

characteristic: environmental stress

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 14


E-MTAB-12128:Sample 15

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 15

text: ArrayExpress

text: cold stress (25 oC)

text: minimal media

characteristic: growth condition

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 15


E-MTAB-12128:Sample 16

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 16

text: ArrayExpress

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

characteristic: organism part

text: Escherichia coli

text: natural isolate

characteristic: strain

text: Sample 16


E-MTAB-12128:Sample 17

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 17

text: ArrayExpress

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 17

characteristic: title


E-MTAB-12128:Sample 18

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 18

text: ArrayExpress

text: heat stress (42 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 18


E-MTAB-12128:Sample 19

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: 96 hours minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 19


E-MTAB-12128:Sample 2

characteristic: ENA-CHECKLIST

text: MASSEY UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12128:Sample 2

text: ArrayExpress

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 2


E-MTAB-12128:Sample 20

text: MASSEY UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12128:Sample 20

text: ArrayExpress

text: no temperature stress (37 oC)

text: rich media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 20


E-MTAB-12128:Sample 21

text: MASSEY UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12128:Sample 21

text: ArrayExpress

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 21


E-MTAB-12128:Sample 3

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 3

text: ArrayExpress

characteristic: broker name

text: cold stress (25 oC)

characteristic: environmental stress

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 3


E-MTAB-12128:Sample 4

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 4

text: ArrayExpress

text: heat stress (42 oC)

text: minimal media

characteristic: growth condition

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 4


E-MTAB-12128:Sample 5

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 5

text: ArrayExpress

text: no temperature stress (37 oC)

text: 96 hours minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

characteristic: organism part

text: Escherichia coli

text: natural isolate

characteristic: strain

text: Sample 5


E-MTAB-12128:Sample 6

characteristic: ENA-FIRST-PUBLIC

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 6

text: ArrayExpress

text: no temperature stress (37 oC)

text: rich media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 6

characteristic: title


E-MTAB-12128:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 7

text: ArrayExpress

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 7


E-MTAB-12128:Sample 8

text: MASSEY UNIVERSITY

text: public

text: E-MTAB-12128:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: cold stress (25 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 8


E-MTAB-12128:Sample 9

characteristic: ENA-CHECKLIST

text: MASSEY UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-12128:Sample 9

text: ArrayExpress

text: no temperature stress (37 oC)

text: minimal media

text: Escherichia coli

text: Escherichia coli

text: whole organism

text: Escherichia coli

text: natural isolate

text: Sample 9


text: NIPH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ELIXIR-Norway

text: N. meningitidis

characteristic: common name

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: eye secretion

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NIPH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ELIXIR-Norway

characteristic: broker name

text: N. meningitidis

text: Norway

text: not provided

text: Homo sapiens

text: blood

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

text: IZSLT

text: OXA-181 producing E. coli

text: Sus scrofa domesticus

text: Pig

text: Escherichia coli

text: Escherichia coli

text: OXA-181 producing E. coli

characteristic: title


characteristic: External Id

text: IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

text: public

characteristic: Submitter Id

text: IZSLT

text: OXA-181 producing E. coli

characteristic: description

text: Sus scrofa domesticus

text: Pig

text: Escherichia coli

text: Escherichia coli

text: OXA-181 producing E. coli


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IZSLT

text: OXA-181 producing E. coli

text: Homo sapiens

text: Human

text: Escherichia coli

text: Escherichia coli

text: OXA-181 producing E. coli


characteristic: INSDC last update

text: public

text: IZSLT

text: OXA-181 producing E. coli

text: Bos taurus

text: Bovine

text: Escherichia coli

text: Escherichia coli

text: OXA-181 producing E. coli


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: Kamil S. Jaron, Jacintha Ellers, Matty Berg

text: University of Edinburgh, Amsterdam Instistute for Life and Environment

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Edinburgh | University of Edinburgh | Ashworth laboratories

characteristic: geographic location (region and locality)

text: cylindrical plaster cages with mossy wood pieces

characteristic: habitat

text: Kamil S. Jaron

text: University of Edinbrgh

text: adult

characteristic: lifestage

text: Allacma fusca

text: WHOLE ORGANISM

characteristic: organism part

text: RND

characteristic: project name

characteristic: sample same as

text: Allacma fusca

text: MALE

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Anthony Smith, NICD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa, Gauteng

characteristic: geographic location

text: Human, Stool

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhi

characteristic: serovar

characteristic: strain

characteristic: title


text: Anthony Smith, NICD

characteristic: INSDC last update

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-FIRST-PUBLIC

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-LAST-UPDATE

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Mpumalanga

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: External Id

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Free State

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

characteristic: INSDC first public

text: public

text: EnteroBase

text: EnteroBase

text: South Africa, KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

characteristic: INSDC status

text: EnteroBase

text: EnteroBase

text: South Africa, Western Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


text: EMG

text: public

characteristic: SRA accession

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Sheep digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1206671 of study SRP022254.

text: Rumen content

characteristic: environmental medium

text: New Zealand

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sheep gut metagenome

text: Rumen

characteristic: local environmental context

text: sheep gut metagenome

characteristic: metagenomic source

text: uncultured Firmicutes bacterium

text: Rumen metagenome and metatranscriptome sequencing from low and high methane producing sheep.

characteristic: project name

characteristic: sample derived from

text: uncultured Firmicutes bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1206671_bin.1_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Sheep digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: Rumen content

text: New Zealand

text: not provided

text: not provided

text: metagenome-assembled genome

text: sheep gut metagenome

text: Rumen

text: sheep gut metagenome

text: uncultured Methanomicrobiales archaeon

characteristic: organism

text: uncultured Methanomicrobiales archaeon

text: Illumina HiSeq 2000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Archaea;p__Euryarchaeota;c__Methanomicrobia;o__Methanomicrobiales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR1206671_bin.10_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Sheep digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Rumen content

characteristic: environmental medium

text: New Zealand

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sheep gut metagenome

text: Rumen

characteristic: local environmental context

text: sheep gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Catabacteriaceae;g__Catabacter;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1206671_bin.102_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Sheep digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: Rumen content

text: New Zealand

text: not provided

text: not provided

text: metagenome-assembled genome

text: sheep gut metagenome

text: Rumen

text: sheep gut metagenome

text: uncultured Prevotella sp.

characteristic: organism

text: uncultured Prevotella sp.

text: Illumina HiSeq 2000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR1206671_bin.104_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Sheep digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Rumen content

characteristic: environmental medium

text: New Zealand

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sheep gut metagenome

text: Rumen

characteristic: local environmental context

text: sheep gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1206671_bin.105_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Sheep digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: Rumen content

text: New Zealand

text: not provided

text: not provided

text: metagenome-assembled genome

text: sheep gut metagenome

text: Rumen

text: sheep gut metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR1206671_bin.107_metaWRAP_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metaWRAP v1.3

text: Sheep digestive system

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Rumen content

characteristic: environmental medium

text: New Zealand

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: sheep gut metagenome

text: Rumen

characteristic: local environmental context

text: sheep gut metagenome

characteristic: metagenomic source

text: uncultured Ruminococcus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Ruminococcus sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Ruminococcus;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1206671_bin.11_metaWRAP_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.3

characteristic: binning software

text: Sheep digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: not provided

text: CheckM

characteristic: description

text: Rumen content

text: New Zealand

text: not provided

text: not provided

text: metagenome-assembled genome

text: sheep gut metagenome

text: Rumen

text: sheep gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR1206671_bin.112_metaWRAP_v1.3_MAG

characteristic: title