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text: Protocols: A total of five birds from the MD-resistant (ADOL 6 3) line were placed into a Horsfall-Bauer (HB) unit at hatch. At twelve days of age, they were sacrificed. After euthanizing the birds, the spleens were aseptically removed, homogenized, filtered to single-cell suspension through 35 micron cell strainers (Falcon, Inc), enriched for mononuclear leukocytes over Histopaque-1077 and transferred the same day on ice for single-cell capture and library preparation of a targeted 3,000 cells/sample. Single cell capture and cDNA library preparation were performed on the 10x Genomics Chromium Single Cell 3’ instrument (10x Genomics, Pleasanton, CA) along with the 10x Chromium Single Cell 3’ Reagent Kits v2 (Catalog number: PN-120237) according to the manufacturer’s recommendations.

text: juvenile stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: spleen

characteristic: organism part

text: Marek's disease virus -resistant

characteristic: phenotype

text: Gallus gallus

text: USDA Avian Disease Ontology Laboratory line 6_3

characteristic: strain


characteristic: External Id

text: Bond Life Sciences Center University of Missouri

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

text: chicken

text: juvenile stage

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: spleen

text: Marek's disease virus -resistant

text: Gallus gallus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

text: ArrayExpress

text: mononuclear cell

text: chicken

text: Protocols: A total of five birds from the MD-resistant (ADOL 6 3) line were placed into a Horsfall-Bauer (HB) unit at hatch. At one week of age, the birds were challenged interperitoneally with 2,000 pfu MDV (JM/102W strain). They were then sacrificed six days post-infection. After euthanizing the birds, the spleens were aseptically removed, homogenized, filtered to single-cell suspension through 35 micron cell strainers (Falcon, Inc), enriched for mononuclear leukocytes over Histopaque-1077 and transferred the same day on ice for single-cell capture and library preparation of a targeted 3,000 cells/sample. Single cell capture and cDNA library preparation were performed on the 10x Genomics Chromium Single Cell 3’ instrument (10x Genomics, Pleasanton, CA) along with the 10x Chromium Single Cell 3’ Reagent Kits v2 (Catalog number: PN-120237) according to the manufacturer’s recommendations.

characteristic: description

text: juvenile stage

text: wild type genotype

text: Marek's disease virus JM/120W

characteristic: infect

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: spleen

text: Marek's disease virus -resistant

text: Gallus gallus

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: mononuclear cell

text: chicken

characteristic: common name

text: Protocols: A total of five birds from the MD-susceptible (ADOL 7 2) line were placed into a Horsfall-Bauer (HB) unit at hatch. At one week of age, the birds were challenged interperitoneally with 2,000 pfu MDV (JM/102W strain). They were then sacrificed six days post-infection. After euthanizing the birds, the spleens were aseptically removed, homogenized, filtered to single-cell suspension through 35 micron cell strainers (Falcon, Inc), enriched for mononuclear leukocytes over Histopaque-1077 and transferred the same day on ice for single-cell capture and library preparation of a targeted 3,000 cells/sample. Single cell capture and cDNA library preparation were performed on the 10x Genomics Chromium Single Cell 3’ instrument (10x Genomics, Pleasanton, CA) along with the 10x Chromium Single Cell 3’ Reagent Kits v2 (Catalog number: PN-120237) according to the manufacturer’s recommendations.

text: juvenile stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Marek's disease virus JM/120W

text: Gallus gallus

text: Gallus gallus

text: spleen

text: Marek's disease virus -susceptible

text: Gallus gallus

text: USDA Avian Disease Ontology Laboratory line 7_2


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: mononuclear cell

text: chicken

text: Protocols: A total of five birds from the MD-susceptible (ADOL 7 2) line were placed into a Horsfall-Bauer (HB) unit at hatch. At twelve days of age, they were sacrificed. After euthanizing the birds, the spleens were aseptically removed, homogenized, filtered to single-cell suspension through 35 micron cell strainers (Falcon, Inc), enriched for mononuclear leukocytes over Histopaque-1077 and transferred the same day on ice for single-cell capture and library preparation of a targeted 3,000 cells/sample. Single cell capture and cDNA library preparation were performed on the 10x Genomics Chromium Single Cell 3’ instrument (10x Genomics, Pleasanton, CA) along with the 10x Chromium Single Cell 3’ Reagent Kits v2 (Catalog number: PN-120237) according to the manufacturer’s recommendations.

text: juvenile stage

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: spleen

characteristic: organism part

text: Marek's disease virus -susceptible

characteristic: phenotype

text: Gallus gallus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: het

text: USA:MI:East Lansing

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

characteristic: latitude

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: not provided

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: INSDC status

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: het

characteristic: genotype

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

characteristic: organism

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: het

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: het

text: USA:MI:East Lansing

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

characteristic: latitude

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: INSDC status

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

characteristic: genotype

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

characteristic: organism

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

characteristic: title

text: microbiome of baat mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC last update

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

characteristic: latitude

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: het

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: INSDC status

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: het

characteristic: genotype

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

characteristic: organism

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice

characteristic: title


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: ko

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

characteristic: latitude

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: INSDC status

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: ko

text: not provided

text: ko

characteristic: genotype

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: ko

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: not provided

text: microbiome of baat mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: ko

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: ko

text: mouse gut metagenome

characteristic: organism

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

characteristic: title

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: INSDC status

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

characteristic: genotype

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

characteristic: latitude

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

characteristic: organism

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: not provided

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

characteristic: title

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: not provided

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: INSDC status

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

characteristic: genotype

text: USA:MI:East Lansing

text: Mus musculus

characteristic: host scientific name

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: ko

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: not provided

text: g

text: Michigan State University

characteristic: latitude

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: not provided

text: g

text: Michigan State University

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: tube

text: forcep

text: baatfecal

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: not provided

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: not provided

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: Submitter Id

text: tube

text: forcep

text: baatfecal

characteristic: description

text: TRUE

text: meters

text: Host-associated

text: Animal

text: animal distal gut

text: urban biome

text: animal-associated habitat

text: feces

text: host-associated

text: het

text: not provided

text: wt

text: USA:MI:East Lansing

text: Mus musculus

text: weeks

text: UBERON:gastrointestinal tract

text: UBERON:feces

text: UBERON:colon

text: mouse

text: not collected

text: cm

text: adult

text: not provided

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: het

text: mouse gut metagenome

characteristic: organism

text: QuinnLab

text: TRUE

text: feces

text: mouse gut metagenome

text: female

text: not provided

text: microbiome of baat mice


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: not applicable

text: tube

text: not applicable

text: baatfecal

text: not collected

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: not applicable

text: not applicable

text: not provided

text: not applicable

text: USA:MI:East Lansing

text: not applicable

text: not applicable

text: weeks

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: cm

text: not applicable

text: not applicable

text: not applicable

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: not applicable

text: not applicable

text: metagenome

text: QuinnLab

text: TRUE

text: control PBS

text: metagenome

text: not applicable

text: not provided

characteristic: title

text: microbiome of baat mice


text: UCSDMI

text: public

characteristic: INSDC status

text: not applicable

text: tube

text: not applicable

text: baatfecal

text: not collected

characteristic: elevation

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: not applicable

text: not applicable

text: not provided

text: not applicable

characteristic: genotype

text: USA:MI:East Lansing

text: not applicable

text: not applicable

text: weeks

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: not applicable

text: cm

text: not applicable

text: not applicable

text: not applicable

text: g

text: Michigan State University

text: Decimal degrees

text: Decimal degrees

text: not applicable

text: not applicable

text: metagenome

text: QuinnLab

text: TRUE

text: control PBS

text: metagenome

text: not applicable

text: not provided

text: microbiome of baat mice


text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: collection date

text: Streptococcus agalactiae

text: Lithuania

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: isolate

text: Vaginal swab

text: Streptococcus agalactiae

text: Streptococcus agalactiae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Streptococcus agalactiae

text: Lithuania

text: not provided

text: Homo sapiens

text: not provided

text: Urine

text: Streptococcus agalactiae

text: Streptococcus agalactiae


characteristic: ENA-LAST-UPDATE

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: Submitter Id

text: Streptococcus agalactiae

characteristic: description

text: Lithuania

text: not provided

text: Homo sapiens

text: not provided

text: Blood

text: Streptococcus agalactiae

characteristic: organism

text: Streptococcus agalactiae


characteristic: External Id

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: INSDC status

text: Streptococcus agalactiae

text: Lithuania

text: not provided

text: Homo sapiens

text: not provided

text: urine

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: title


text: STATENS SERUM INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: NextSeq 500

tag: Namespace:STATENS SERUM INSTITUT

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis


text: no

text: WWU

text: public

text: adult

text: microbial community

characteristic: broad-scale environmental context

text: Feacal microbiota of conspecific and heterospecific cross-fostered zebra finches and Bengalese finches under controlled conditions during three mongths of life.

text: fecal material

characteristic: environmental medium

text: Father

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (lattitude)

characteristic: geographic location (longitude)

characteristic: group

text: Lonchura striata

text: Male

text: intestine environment

characteristic: local environmental context

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

characteristic: sequencing method

text: Bengalese Finch

characteristic: species

text: Bengalese_Finch_Male_adult_Day_010_VS13_VS13


text: no

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WWU

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: adult

text: microbial community

text: fecal material

text: Father

text: Germany

text: Lonchura striata

characteristic: host scientific name

text: Male

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS4A_VS4A


text: no

characteristic: External Id

text: WWU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: adult

text: microbial community

characteristic: description

text: fecal material

text: Mother

text: Germany

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

characteristic: organism

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Female_adult_Day_010_VS4A_VS4A

characteristic: title


text: no

text: WWU

text: public

text: adult

text: microbial community

characteristic: broad-scale environmental context

text: fecal material

characteristic: environmental medium

text: Father

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (lattitude)

characteristic: geographic location (longitude)

characteristic: group

text: Lonchura striata

text: Male

text: intestine environment

characteristic: local environmental context

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS15_VS15


text: no

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WWU

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: adult

text: microbial community

text: fecal material

text: Mother

text: Germany

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

characteristic: sequencing method

text: Bengalese Finch

characteristic: species

text: Bengalese_Finch_Female_adult_Day_010_VS15_VS15


text: no

characteristic: External Id

text: WWU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: adult

text: microbial community

characteristic: description

text: fecal material

text: Father

text: Germany

text: Lonchura striata

characteristic: host scientific name

text: Male

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS08_VS08


text: no

text: WWU

text: public

text: adult

text: microbial community

characteristic: broad-scale environmental context

text: fecal material

characteristic: environmental medium

text: Mother

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (lattitude)

characteristic: geographic location (longitude)

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

characteristic: organism

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Female_adult_Day_010_VS08_VS08

characteristic: title


text: no

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WWU

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: adult

text: microbial community

text: fecal material

text: Father

text: Germany

characteristic: group

text: Lonchura striata

text: Male

text: intestine environment

characteristic: local environmental context

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS14A_VS14A


text: no

characteristic: External Id

text: WWU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: adult

text: microbial community

text: fecal material

text: Mother

text: Germany

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

characteristic: sequencing method

text: Bengalese Finch

characteristic: species

text: Bengalese_Finch_Female_adult_Day_010_VS14A_VS14A


text: no

text: WWU

text: public

text: adult

text: microbial community

characteristic: broad-scale environmental context

characteristic: description

text: fecal material

characteristic: environmental medium

text: Father

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (lattitude)

characteristic: geographic location (longitude)

text: Lonchura striata

characteristic: host scientific name

text: Male

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS19B_VS19B


text: no

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WWU

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: adult

text: microbial community

text: fecal material

text: Mother

text: Germany

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

characteristic: organism

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Female_adult_Day_010_VS19B_VS19B

characteristic: title


text: no

characteristic: External Id

text: WWU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: adult

text: microbial community

text: fecal material

text: Father

text: Germany

characteristic: group

text: Lonchura striata

text: Male

text: intestine environment

characteristic: local environmental context

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS14B_VS14B


text: no

text: WWU

text: public

text: adult

text: microbial community

characteristic: broad-scale environmental context

characteristic: description

text: fecal material

characteristic: environmental medium

text: Mother

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (lattitude)

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

characteristic: sequencing method

text: Bengalese Finch

characteristic: species

text: Bengalese_Finch_Female_adult_Day_010_VS14B_VS14B


text: no

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WWU

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: adult

text: microbial community

text: fecal material

text: Father

text: Germany

characteristic: geographic location (longitude)

text: Lonchura striata

characteristic: host scientific name

text: Male

text: intestine environment

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS4B_VS4B


text: no

characteristic: External Id

text: WWU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: adult

text: microbial community

text: fecal material

text: Mother

text: Germany

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

characteristic: organism

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Female_adult_Day_010_VS4B_VS4B

characteristic: title


text: no

text: WWU

text: public

text: adult

text: microbial community

characteristic: broad-scale environmental context

characteristic: description

text: fecal material

characteristic: environmental medium

text: Father

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (lattitude)

characteristic: group

text: Lonchura striata

text: Male

text: intestine environment

characteristic: local environmental context

text: bird metagenome

text: Day 010

text: bird metagenome

text: MiSeq

text: Bengalese Finch

text: Bengalese_Finch_Male_adult_Day_010_VS18B_VS18B


text: no

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WWU

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: adult

text: microbial community

text: Feacal microbiota of conspecific and heterospecific cross-fostered zebra finches and Bengalese finches under controlled conditions during three mongths of life.

text: fecal material

text: Mother

text: Germany

text: Lonchura striata

text: Female

text: intestine environment

text: bird metagenome

text: Day 010

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text: MiSeq

characteristic: sequencing method

text: Bengalese Finch

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text: no

characteristic: External Id

text: WWU

characteristic: INSDC center name

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text: adult

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characteristic: geographic location (longitude)

text: Lonchura striata

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

characteristic: External Id

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text: no

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text: no

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text: WWU

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text: no

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text: WWU

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text: no

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text: no

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text: no

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text: adult

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text: fecal material

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text: Germany

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text: Day 035

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text: no

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text: Lonchura striata

characteristic: host scientific name

text: Male

text: intestine environment

text: bird metagenome

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text: no

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characteristic: title


text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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text: no

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characteristic: title


text: no

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text: no

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text: public

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characteristic: broad-scale environmental context

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characteristic: environmental medium

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text: Germany

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text: no

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text: no

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text: no

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text: no

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