text: University College London

text: public

text: 1 MIC RIF and 1 MIC INH, end of evolution cycle 1, replicate 2

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College London

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University College London

characteristic: Submitter Id

text: 8 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 2

characteristic: description

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: prokaryote

characteristic: serovar

characteristic: strain

characteristic: title


text: University College London

text: public

text: 8 MIC RIF and 8 MIC INH, end of evolution cycle 1, replicate 2

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 0 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 0 MIC RIF and 1 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 1/4 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 1 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 2

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 8 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: Start 3 x standard dose OD HFIM experiment

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: End 1/3 x standard dose TDS HFIM experiment

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: End 3 x standard dose OD HFIM experiment

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 1/4 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 2

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 1 MIC RIF and 0 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 8 MIC RIF and 8 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: 1 MIC RIF and 1 MIC INH, end of evolution cycle 1, replicate 1

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: End standard dose OD HFIM experiment

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: Start standard dose TDS HFIM experiment

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: University College London

text: public

text: End standard dose TDS HFIM experiment

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: prokaryote


text: JIC

text: public

characteristic: collection date

text: Mycelia grown on complete medium in a growth room with 25 degrees C temperature.

text: USA

characteristic: geographic location (country and/or sea)

text: Pyricularia oryzae

text: Pyricularia oryzae


characteristic: ENA-CHECKLIST

text: JIC

text: public

text: Burkina Faso

text: Pyricularia oryzae

text: Pyricularia oryzae


characteristic: ENA-FIRST-PUBLIC

text: JIC

text: public

text: Benin

text: Pyricularia oryzae

text: Pyricularia oryzae


characteristic: ENA-LAST-UPDATE

text: JIC

text: public

text: China

text: Pyricularia oryzae

text: Pyricularia oryzae


characteristic: External Id

text: JIC

text: public

text: Egypt

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

characteristic: INSDC center name

text: public

text: Colombia

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

characteristic: INSDC first public

text: public

text: Ghana

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

characteristic: INSDC last update

text: public

text: India

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

characteristic: INSDC status

text: Kenya

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

characteristic: SRA accession

text: Mali

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

characteristic: Submitter Id

text: Nigeria

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

characteristic: description

text: Philippines

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

text: Togo

text: Pyricularia oryzae

characteristic: organism

text: Pyricularia oryzae


text: JIC

text: public

text: Thailand

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

text: Tanzania

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

text: Uganda

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

text: USA

text: Pyricularia oryzae

text: Pyricularia oryzae


text: JIC

text: public

text: Pyricularia oryzae

text: Pyricularia oryzae


E-MTAB-11869:Sample 5

text: public

text: E-MTAB-11869:Sample 5

tag: Namespace:The Inne ear and Olfaction laboratory, Department of Clinical Neurosciences, Medical Faculty, University of Geneva

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: auditory neuroprogenitor

characteristic: cell type

text: A/J ANPGs

characteristic: cohort

text: house mouse

characteristic: common name

text: Protocols: Phoenix ANPGs are isolated as primary cells from the A/J mouse cochlea at P3-P7, a developmental stage characterized by SGN spontaneous spiking (Tritsch and Bergles, 2010) and ensheathment with glial cells (Romand and Romand, 1990).. Spiral ganglion cells isolation and in vitro culture.Collection of mouse inner ear spiral ganglion cells was done as previously described in Rousset et al, 2020 (10.3389/fncel.2020.599152 ). Day 3-7 postnatal A.B6-Tyr+/J (Stock No: 002565, Jackson; carrying the wild type allele of Tyr in a A/J strain genetic background (Stock No: 000646) and C57Bl6/J (Stock No: 000664) pups were used. They were euthanized by decapitation. The head surface was sterilized with 70% Ethanol and was sectioned along the mid-sagittal plane. Brain and brainstem were removed and both half-skulls were immersed in 2.5 ml of ice-cold Hanks’ Balanced Salt Solution (HBSS) in a 35 mm Petri dish. The cochleae were removed under a stereo microscope (Nikkon, Japan). The cartilaginous cochlear capsule was opened and the stria vascularis and the organ of Corti (OC) were removed in one piece from base to apex using 5.5 forceps. The modiolus (with the spiral ganglion cells) was then transferred into 1.5 mL Eppendorf tube with ice-cold HBSS. Tissue dissociation was done by enzymatic digestion followed by mechanical trituration. The modiolus was treated with Accutase (StemPro™ Accutase™ Cell Dissociation Reagent) for 15 minutes, the reaction was stopped by adding proliferation media: DMEM:F12 with 15mM HEPES buffer and 2mM L-glutamine supplemented with 1X N2 and B27 supplement (Thermo Fisher), 1X Penicillin streptomycin (100U/ml) (Thermo Fisher), in presence of bFGF (10ng/ml, ProSpec), IGF1 (50ng/ml, Cell Guidance Systems), Heparan sulfate (50 ng/ml, Sigma Aldrich) and EGF (20 ng/ml, Cell Guidance Systems) and mechanical trituration was performed with P1000 (10-15 up and downs). Following Accutase removal with a centrifugation step, the cell suspension was filtered with a 70µm filter to eliminate undissociated tissue or bony parts and select small cluster of spiral ganglion cells. Isolated cells were maintained in culture with proliferation media in ultra-low attachment 6 well plates (Corning, Sigma Aldrich). Passaging of spiral ganglion cells-derived neurospheres was done twice a week using enzymatic digestion with Accutase™ followed by mechanical trituration as previously described RNA extraction was performed using a Qiagen RNA extraction minikit (Qiagen), according to the manufacturer’s protocol. TruSeq ribodepleted stranded mRNA was applied to all samples to eliminate ribosomic RNA

text: juvenile stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cochlea

characteristic: organism part

text: Mus musculus

text: Sample 5


E-MTAB-11869:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Inne ear and Olfaction laboratory, Department of Clinical Neurosciences, Medical Faculty, University of Geneva

characteristic: INSDC center name

text: public

text: E-MTAB-11869:Sample 6

text: ArrayExpress

text: auditory neuroprogenitor

text: A/J ANPGs

text: house mouse

text: juvenile stage

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cochlea

text: Mus musculus

characteristic: strain

text: Sample 6

characteristic: title


E-MTAB-11869:Sample 7

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11869:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: auditory neuroprogenitor

text: A/J ANPGs

text: house mouse

characteristic: description

text: juvenile stage

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cochlea

text: Mus musculus

text: Sample 7


E-MTAB-11869:Sample 8

text: public

text: E-MTAB-11869:Sample 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: auditory neuroprogenitor

characteristic: cell type

text: A/J ANPGs

characteristic: cohort

text: house mouse

characteristic: common name

text: juvenile stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cochlea

text: Mus musculus

text: Sample 8


E-MTAB-11869:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11869:Sample 1

text: ArrayExpress

text: auditory neuroprogenitor

text: C57Bl6/J ANPGs

text: house mouse

text: juvenile stage

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cochlea

characteristic: organism part

text: Mus musculus

text: Sample 1


E-MTAB-11869:Sample 2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11869:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: auditory neuroprogenitor

text: C57Bl6/J ANPGs

text: house mouse

text: juvenile stage

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cochlea

text: Mus musculus

characteristic: strain

text: Sample 2

characteristic: title


E-MTAB-11869:Sample 3

text: public

text: E-MTAB-11869:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: auditory neuroprogenitor

characteristic: cell type

text: C57Bl6/J ANPGs

characteristic: cohort

text: house mouse

characteristic: common name

characteristic: description

text: juvenile stage

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cochlea

text: Mus musculus

text: Sample 3


E-MTAB-11869:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11869:Sample 4

text: ArrayExpress

text: auditory neuroprogenitor

text: C57Bl6/J ANPGs

text: house mouse

text: juvenile stage

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cochlea

text: Mus musculus

text: Sample 4


E-MTAB-11869:Sample 10

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11869:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: auditory neuroprogenitor

text: Phoenix ANPGs

text: house mouse

text: juvenile stage

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: cochlea

characteristic: organism part

text: Mus musculus

text: Sample 10


E-MTAB-11869:Sample 11

text: public

text: E-MTAB-11869:Sample 11

characteristic: age

text: ArrayExpress

characteristic: broker name

text: auditory neuroprogenitor

characteristic: cell type

text: Phoenix ANPGs

characteristic: cohort

text: house mouse

characteristic: common name

text: juvenile stage

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: cochlea

text: Mus musculus

characteristic: strain

text: Sample 11

characteristic: title


E-MTAB-11869:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11869:Sample 9

text: ArrayExpress

text: auditory neuroprogenitor

text: Phoenix ANPGs

text: house mouse

characteristic: description

text: juvenile stage

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cochlea

text: Mus musculus

text: Sample 9


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: Submitter Id

text: replicate 1

characteristic: dev stage

text: Pristionchus pacificus

text: Pristionchus pacificus


text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: replicate 2

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 3

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 1

text: the 4th apolysis

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 2

text: the 4th apolysis

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 3

text: the 4th apolysis

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 1

text: the 4th Ecdysis

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 2

text: the 4th Ecdysis

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 3

text: the 4th Ecdysis

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 1

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 1

text: the 4th lethargus

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 2

text: the 4th lethargus

text: Pristionchus pacificus

text: Pristionchus pacificus


text: public

text: replicate 3

text: the 4th lethargus

text: Pristionchus pacificus

text: Pristionchus pacificus


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: v4 region of the bacterial 16S rRNA gene and ITS1 region of the fungal ITS

text: Yes

characteristic: environmental sample

text: Costa Rica

characteristic: geographic location (country and/or sea)

text: Fermenting cocoa pulp-bean mass

characteristic: isolation source

text: food fermentation metagenome

text: food fermentation metagenome


text: public

tag: Namespace:Faculty of Biology - Technion Israel Institute of Technology

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: HCT116 cells were plated at 6cm cells and 24 hours later transfected with control or RBM42 siRNA. 48 hours after siRNA transfection, cells were treated with 20 micromolar VP16 (etoposide) for 12 hours. Cells were directly lysed using TRIzol reagent (Ambion) for RNA extraction. HCT116 cells were grown in a humidified 37C incubator (5% CO2) in RPMI-1640 medium (Gibco) supplemented with 10% heat-inactivated FBS, 2mM L-glutamine (Gibco), 100unit/mL penicillin and 100μg/mL streptomycin (Gibco). siRNA transfections were performed using Lipofectamine™ RNAiMAX (Invitrogen) according to the manufacturer's instructions. Total RNA was extracted from cells using TRIzol reagent according to the manufacturer's instructions (Ambion). RNA-seq libraries were prepared at the Crown Genomics institute of the Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science using TruSeq mRNA library preparation kit (Illumina). Libraries were quantified by Qubit (Thermo fisher scientific) and TapeStation (Agilent).

text: adult

characteristic: developmental stage

text: colorectal carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: 20 micromolar VP16 (etoposide) - 12 hours

characteristic: response to treatment

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Faculty of Biology - Technion Israel Institute of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: colorectal carcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF HELSINKI

characteristic: Submitter Id

text: fibroblasts

characteristic: cell line

text: fibroblasts

characteristic: cell type

text: Brendan Battersby lab

characteristic: collected by

text: human

text: Human wild type fibroblasts #1 mitochondrial ribosome mRNA Replicate_1

text: Finland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

characteristic: common name

text: Human wild type fibroblasts #1 mitochondrial ribosome mRNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type fibroblasts #1 mitochondrial ribosome mRNA Replicate_3

text: Finland

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human PRORP patient fibroblasts mitochondrial ribosome mRNA Replicate_1

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human PRORP patient fibroblasts mitochondrial ribosome mRNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human PRORP patient fibroblasts mitochondrial ribosome mRNA Replicate_3

characteristic: description

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type fibroblasts #1 whole cell lysate RNA Replicate_1

text: Finland

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type fibroblasts #1 whole cell lysate RNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

characteristic: cell line

text: fibroblasts

characteristic: cell type

text: Brendan Battersby lab

text: human

text: Human wild type fibroblasts #1 whole cell lysate RNA Replicate_3

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

characteristic: collected by

text: human

text: Human PRORP patient fibroblasts whole cell lysate RNA Replicate_1

text: Finland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

characteristic: common name

text: Human PRORP patient fibroblasts whole cell lysate RNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type myoblasts #1 whole cell lysate RNA Replicate_1

text: Finland

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type myoblasts #1 whole cell lysate RNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type myoblasts #2 whole cell lysate RNA Replicate_1

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type myoblasts #2 whole cell lysate RNA Replicate_2

characteristic: description

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

text: skeletal muscle

text: skeletal muscle

text: Brendan Battersby lab

text: human

text: Human wild type skeletal muscle #1 whole cell lysate RNA Replicate_1

text: Finland

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: skeletal muscle

text: skeletal muscle

text: Brendan Battersby lab

text: human

text: Human wild type skeletal muscle #1 whole cell lysate RNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: skeletal muscle

characteristic: cell line

text: skeletal muscle

characteristic: cell type

text: Brendan Battersby lab

text: human

text: Human wild type skeletal muscle #2 whole cell lysate RNA Replicate_1

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: skeletal muscle

text: skeletal muscle

text: Brendan Battersby lab

characteristic: collected by

text: human

text: Human wild type skeletal muscle #2 whole cell lysate RNA Replicate_2

text: Finland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

characteristic: common name

text: Human wild type fibroblasts #2 whole cell lysate RNA Replicate_1

text: Finland

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human wild type fibroblasts #2 whole cell lysate RNA Replicate_2

text: Finland

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

text: human

text: Human C12orf65 deficency fibroblasts whole cell lysate RNA CO1.2 Replicate_1

text: Finland

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fibroblasts

text: fibroblasts

text: Brendan Battersby lab

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characteristic: host body site

text: RRMS

text: female

text: RACE-S

text: human-associated

text: metagenome

text: human metagenome

text: human metagenome

text: Miseq

text: RACE-S

characteristic: title


UMIs-TRAC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universitat Pompeu Fabra

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UMIs-TRAC

tag: Namespace:Universitat Pompeu Fabra

text: human

characteristic: common name

text: UMIs-TRAC

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: UMIs-TRAC


text: Universitat Pompeu Fabra

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Johns Hopkins School of Medicine

text: public

tag: Namespace:Johns Hopkins School of Medicine

text: human

text: 10x single cell sequencing of B cells sorted from myocardium�of two LVAD recipients and the peripheral blood of these same recipients.

text: Homo sapiens

text: Homo sapiens

text: LVAD recipients' B cells single cell sequencing


text: Johns Hopkins School of Medicine

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: LVAD recipients' B cells single cell sequencing (surface membrane protiens)


text: public

tag: Namespace:CNRS - CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE

text: fruit fly

text: 50 males

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

characteristic: sex

text: flye

characteristic: tissue type

text: Drosophila genomes using single-molecule sequencing technology from Oxford Nanopore


text: ELKH BRC

text: public

tag: Namespace:ELKH BRC

text: sequences of antibiotic resistance gene from the metagenomes of the human gut and soil samples and from the genomes of different pathogenic bacterial strains

text: Escherichia coli

text: Escherichia coli

text: Downtag


text: ELKH BRC

text: public

text: Escherichia coli

text: Escherichia coli

text: Uptag


text: ELKH BRC

text: public

text: Escherichia coli

text: Escherichia coli


text: ELKH BRC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: ELKH BRC

text: public

text: Salmonella enterica

text: Salmonella enterica


text: ELKH BRC

text: public

text: Shigella sonnei

text: Shigella sonnei


E-MTAB-11158:Sample 1

text: STANFORD UNIVERSITY

text: public

text: E-MTAB-11158:Sample 1

tag: Namespace:STANFORD UNIVERSITY

text: ArrayExpress

characteristic: broker name

text: U-87 MG

text: human

text: Protocols: >1000-fold coverage of mutagenized cells (Brunello library) was infected with Reovirus Type 3 Dearing Strain (MOI=0.1 PFU/cell). When resistant colonies of cells were clearly apparent, the cells were harvested. Uninfected starting populations of mutagenized cells were used as the unselected reference. Total genomic DNA from both virus-resistant and uninfected cells was respectively extracted using QIAamp DNA Mini Kit (Qiagen). The inserted guide RNA sequences were retrieved from the genomic DNA by PCR amplification.

text: glioblastoma

characteristic: disease

text: CRISPR knockout by Brunello Library (PMID: 26780180)

characteristic: genetic modification

text: lentiCas9-Blast; lentiGuide-Puro

characteristic: genotype

text: uninfected/unselected control

characteristic: infect

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: expressing Cas9

characteristic: phenotype

text: Homo sapiens

text: Sample 1


E-MTAB-11158:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STANFORD UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11158:Sample 2

text: ArrayExpress

text: U-87 MG

text: human

text: glioblastoma

text: lentiCas9-Blast; lentiGuide-Puro

text: Reovirus Type 3 Dearing Strain infected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: brain

text: expressing Cas9

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-11158:Sample 3

text: STANFORD UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11158:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: eHAP

text: human

characteristic: common name

characteristic: description

text: chronic myeloid leukemia

text: lentiCas9-Blast; lentiGuide-Puro

text: uninfected/unselected control

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: expressing Cas9

text: Homo sapiens

text: Sample 3


E-MTAB-11158:Sample 4

text: STANFORD UNIVERSITY

text: public

text: E-MTAB-11158:Sample 4

text: ArrayExpress

characteristic: broker name

text: eHAP

text: human

text: chronic myeloid leukemia

characteristic: disease

characteristic: genetic modification

text: lentiCas9-Blast; lentiGuide-Puro

characteristic: genotype

text: Reovirus Type 3 Dearing Strain infected

characteristic: infect

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: blood

text: expressing Cas9

text: Homo sapiens

text: Sample 4


M. thermolithotrophicus DSM 2095

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: M. thermolithotrophicus DSM 2095

tag: Namespace:Max Planck Institute for Marine Microbiology

text: Methanothermococcus thermolithotrophicus DSM 2095 (procured from Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures) was grown anaerobically in minimal mineral medium with 1 bar H2:CO2 (80%:20%) overpressure or 0.6 bar H2/CO2 and 0.4 bar N2 overpressure for the diazotrophic cultures.

text: M. thermolithotrophicus DSM 2095


text: DTU-CFB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: L.fermentum isolated from industrial sugarcane ethanol bioprocess. Refer to Lino, Li et al for more information.

text: Limosilactobacillus fermentum

text: Limosilactobacillus fermentum

text: L.fermentum strainA

characteristic: title


text: DTU-CFB

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Limosilactobacillus fermentum

text: Limosilactobacillus fermentum

text: L.fermentum strainB


text: DTU-CFB

text: public

characteristic: description

text: Limosilactobacillus fermentum

characteristic: organism

text: Limosilactobacillus fermentum

text: L.fermentum strainC


E-MTAB-11919:Sample 11

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 11

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: ArrayExpress

characteristic: broker name

text: transgender

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Venipuncture PicoPure™ RNA Isolation Kit NEBNext mRNA Ultra II

text: adult

characteristic: developmental stage

text: gender dysphoria

characteristic: disease

text: Sample 11

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 11


E-MTAB-11919:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

text: public

text: E-MTAB-11919:Sample 12

text: ArrayExpress

text: transgender

text: human

text: adult

text: gender dysphoria

text: Sample 12

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 12


E-MTAB-11919:Sample 13

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11919:Sample 13

text: ArrayExpress

text: transgender

text: human

text: adult

text: gender dysphoria

text: Sample 13

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 13

characteristic: title


E-MTAB-11919:Sample 14

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 14

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: transgender

characteristic: clinical information

text: human

characteristic: description

text: adult

text: gender dysphoria

text: Sample 14

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 14


E-MTAB-11919:Sample 15

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 15

text: ArrayExpress

text: transgender

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: gender dysphoria

characteristic: disease

text: Sample 15

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 15


E-MTAB-11919:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 16

text: ArrayExpress

text: transgender

text: human

text: adult

text: gender dysphoria

text: Sample 16

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Sample 16


E-MTAB-11919:Sample 17

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11919:Sample 17

text: ArrayExpress

text: transgender

text: human

text: adult

text: gender dysphoria

text: Sample 17

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 17


E-MTAB-11919:Sample 18

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 18

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: transgender

characteristic: clinical information

text: human

characteristic: description

text: adult

text: gender dysphoria

text: Sample 18

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 18

characteristic: title


E-MTAB-11919:Sample 19

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 19

text: ArrayExpress

text: transgender

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: gender dysphoria

characteristic: disease

text: Sample 19

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 19


E-MTAB-11919:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 20

text: ArrayExpress

text: transgender

text: human

text: adult

text: gender dysphoria

text: Sample 20

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 20


E-MTAB-11919:Sample 1

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11919:Sample 1

text: ArrayExpress

text: cisgender

text: human

text: adult

text: normal

text: Sample 1

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: man

characteristic: sex

text: Sample 1


E-MTAB-11919:Sample 10

text: UNIVERSITY COLLEGE LONDON

text: public

characteristic: SRA accession

text: E-MTAB-11919:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cisgender

characteristic: clinical information

text: human

characteristic: description

text: adult

text: normal

text: Sample 10

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-11919:Sample 2

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 2

text: ArrayExpress

text: cisgender

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Sample 2

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: man

text: Sample 2

characteristic: title


E-MTAB-11919:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 3

text: ArrayExpress

text: cisgender

text: human

text: adult

text: normal

text: Sample 3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: man

text: Sample 3


E-MTAB-11919:Sample 4

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11919:Sample 4

text: ArrayExpress

text: cisgender

text: human

text: adult

text: normal

text: Sample 4

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: man

text: Sample 4


E-MTAB-11919:Sample 5

text: UNIVERSITY COLLEGE LONDON

text: public

characteristic: SRA accession

text: E-MTAB-11919:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cisgender

characteristic: clinical information

text: human

text: adult

text: normal

text: Sample 5

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: man

characteristic: sex

text: Sample 5


E-MTAB-11919:Sample 6

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 6

text: ArrayExpress

text: cisgender

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Sample 6

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-11919:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 7

text: ArrayExpress

text: cisgender

text: human

text: adult

text: normal

text: Sample 7

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 7

characteristic: title


E-MTAB-11919:Sample 8

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11919:Sample 8

text: ArrayExpress

text: cisgender

text: human

text: adult

text: normal

text: Sample 8

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-11919:Sample 9

text: UNIVERSITY COLLEGE LONDON

text: public

characteristic: SRA accession

text: E-MTAB-11919:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cisgender

characteristic: clinical information

text: human

text: adult

text: normal

text: Sample 9

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-11919:Sample 21

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 21

text: ArrayExpress

text: cisgender

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: systemic lupus erythematosus

characteristic: disease

text: Sample 21

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: sex

text: Sample 21


E-MTAB-11919:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 22

text: ArrayExpress

text: cisgender

text: human

text: adult

text: systemic lupus erythematosus

text: Sample 22

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 22


E-MTAB-11919:Sample 23

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11919:Sample 23

text: ArrayExpress

text: cisgender

text: human

text: adult

text: systemic lupus erythematosus

text: Sample 23

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 23

characteristic: title


E-MTAB-11919:Sample 24

text: UNIVERSITY COLLEGE LONDON

text: public

characteristic: SRA accession

text: E-MTAB-11919:Sample 24

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cisgender

characteristic: clinical information

text: human

text: adult

text: systemic lupus erythematosus

text: Sample 24

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 24


E-MTAB-11919:Sample 25

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 25

text: ArrayExpress

text: cisgender

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: systemic lupus erythematosus

characteristic: disease

text: Sample 25

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 25


E-MTAB-11919:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

text: public

text: E-MTAB-11919:Sample 26

text: ArrayExpress

text: cisgender

text: human

text: adult

text: systemic lupus erythematosus

text: Sample 26

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Sample 26