characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-30 09:00

text: V7 Sample 9A11

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

text: Homo sapiens

text: Volunteer 7

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Chest

text: skin

text: C

text: human skin metagenome

text: male

text: Time 8

characteristic: title

text: Silver

text: Week 11


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: qiita_sid_11272:11272.Cl.V8.11B9.F.71265

text: 2017-04-21 00:00

text: V8 Sample 11B9

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 8

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Fecal samples

characteristic: sample site

text: feces

characteristic: sample type

text: F

text: human gut metagenome

text: female

characteristic: sex

text: Time 2

characteristic: timepoint

text: Clothes impact on microbiome and metabolome

text: Silver

characteristic: tshirt

text: Week 5

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-10 10:00

text: V8 Sample 6A10

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

text: Homo sapiens

text: Volunteer 8

text: not collected

text: years

text: cm

text: kg

text: Metronidazole and I took it from 05/09 to 05/14

characteristic: medication

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Left armpit

text: skin

text: LA

text: human skin metagenome

text: female

text: Time 5

characteristic: title

text: Non-silver

text: Week 8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2017-05-19 10:00

text: V8 Sample 7D7

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: volunteer 8

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Lower back

characteristic: sample site

text: skin

characteristic: sample type

text: LB

text: human skin metagenome

text: female

characteristic: sex

text: Time 6

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 9

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-26 10:00

text: V8 Sample 8D4

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

text: Homo sapiens

text: Volunteer 8

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Left armpit

text: skin

text: LA

text: human skin metagenome

text: female

text: Time 7

characteristic: title

text: Silver

text: Week 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-06-09 10:00

text: V9 Sample 10D8

text: FALSE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Caucasian

text: USA:CA:San Diego

text: Control

characteristic: host common name

text: Volunteer 9

characteristic: host subject id

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Blank

characteristic: sample site

text: control swab

characteristic: sample type

text: Blank

text: metagenome

text: male

characteristic: sex

text: Time 9

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 12

characteristic: week


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_11272:11272.Cl.V9.11D4.F.71325

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-28 00:00

text: V9 Sample 11D4

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 9

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human gut metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Fecal samples

text: feces

text: F

text: human gut metagenome

text: male

text: Time 3

characteristic: title

text: Silver

text: Week 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11272:11272.Cl.V9.11E12.F.71347

text: 2017-05-07 00:00

text: V9 Sample 11E12

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

text: Volunteer 9

characteristic: host subject id

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Fecal samples

characteristic: sample site

text: feces

characteristic: sample type

text: F

text: human gut metagenome

text: male

characteristic: sex

text: Time 4

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 7

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-14 10:00

text: V9 Sample 2E3

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 9

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: male

text: Time 1

characteristic: title

text: Silver

text: Week 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-04-14 10:00

text: V9 Sample 2E5

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

text: Volunteer 9

characteristic: host subject id

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Chest

characteristic: sample site

text: skin

characteristic: sample type

text: C

text: human skin metagenome

text: male

characteristic: sex

text: Time 1

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 4

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-28 10:00

text: V9 Sample 4E2

characteristic: description

text: FALSE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: Control

text: Volunteer 9

text: years

text: cm

text: kg

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Blank

text: control swab

text: Blank

text: metagenome

text: male

text: Time 3

characteristic: title

text: Silver

text: Week 6


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-04-28 10:00

text: V9 Sample 4E4

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: sedentary, girlfriend sick

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 9

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Left armpit

characteristic: sample site

text: skin

characteristic: sample type

text: LA

text: human skin metagenome

text: male

characteristic: sex

text: Time 3

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-28 10:00

text: V9 Sample 4E5

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: sedentary, girlfriend sick

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 9

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Chest

text: skin

text: C

text: human skin metagenome

text: male

text: Time 3

characteristic: title

text: Silver

text: Week 6

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-05-05 10:00

text: V9 Sample 5E2

text: FALSE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Caucasian

text: swimming ocean Tuesday, pool Wednesday

text: USA:CA:San Diego

text: Control

characteristic: host common name

text: Volunteer 9

characteristic: host subject id

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Blank

characteristic: sample site

text: control swab

characteristic: sample type

text: Blank

text: metagenome

text: male

characteristic: sex

text: Time 4

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 7


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-05 10:00

text: V9 Sample 5E6

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: swimming ocean Tuesday, pool Wednesday

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 9

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Upper back

text: skin

text: UB

text: human skin metagenome

text: male

text: Time 4

characteristic: title

text: Non-silver

text: Week 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-12 10:00

text: V9 Sample 6D12

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

text: Volunteer 9

characteristic: host subject id

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Upper back

characteristic: sample site

text: skin

characteristic: sample type

text: UB

text: human skin metagenome

text: male

characteristic: sex

text: Time 5

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 8

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-19 10:40

text: V9 Sample 7E11

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 9

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Chest

text: skin

text: C

text: human skin metagenome

text: male

text: Time 6

characteristic: title

text: Non-silver

text: Week 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of tropical medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute of tropical medicine

characteristic: collection date

text: Gambia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapien

characteristic: isolate

text: Sputum

characteristic: isolation source

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: TB sample from The Gambia


text: University of Antwerp

text: public

characteristic: SRA accession

tag: Namespace:University of Antwerp

characteristic: Submitter Id

text: South Africa

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: Mtb

text: sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mtb clinical isolates


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

text: 2017-04-06 08:00

text: V3 Sample 1B11

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

text: Volunteer 3

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Chest

characteristic: sample site

text: skin

characteristic: sample type

text: C

text: human skin metagenome

text: female

characteristic: sex

text: Time 0

characteristic: timepoint

text: Personal

characteristic: tshirt

text: Week 3

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-06 08:00

text: V3 Sample 1C1

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

text: not collected

text: human

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Lower back

text: skin

text: LB

text: human skin metagenome

text: female

text: Time 0

characteristic: title

text: Personal

text: Week 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-04-13 08:00

text: V3 Sample 2B2

text: FALSE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Asian

text: USA:CA:San Diego

characteristic: geo loc name

text: Control

characteristic: host common name

text: Volunteer 3

characteristic: host subject id

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Blank

characteristic: sample site

text: control swab

characteristic: sample type

text: Blank

text: metagenome

text: female

characteristic: sex

text: Time 1

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 4

characteristic: week


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-13 08:00

text: V3 Sample 2B6

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Upper back

text: skin

text: UB

text: human skin metagenome

text: female

text: Time 1

characteristic: title

text: Silver

text: Week 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-04-27 08:00

text: V3 Sample 4B2

text: FALSE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Asian

text: USA:CA:San Diego

characteristic: geo loc name

text: Control

characteristic: host common name

text: Volunteer 3

characteristic: host subject id

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Blank

characteristic: sample site

text: control swab

characteristic: sample type

text: Blank

text: metagenome

text: female

characteristic: sex

text: Time 3

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 6

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-27 08:00

text: V3 Sample 4B3

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: female

text: Time 3

characteristic: title

text: Silver

text: Week 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-04 08:00

text: V3 Sample 5B8

text: FALSE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Asian

text: USA:CA:San Diego

characteristic: geo loc name

text: Control

characteristic: host common name

text: Volunteer 3

characteristic: host subject id

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Blank

characteristic: sample site

text: control swab

characteristic: sample type

text: Blank

text: metagenome

text: female

characteristic: sex

text: Time 4

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 7

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-04 08:00

text: V3 Sample 5B9

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

characteristic: ethnicity

text: does not notice a difference in shirts

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: female

text: Time 4

characteristic: title

text: Non-silver

text: Week 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-26 09:40

text: V3 Sample 8C10

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Asian

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

text: Volunteer 3

characteristic: host subject id

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Left armpit

characteristic: sample site

text: skin

characteristic: sample type

text: LA

text: human skin metagenome

text: female

characteristic: sex

text: Time 7

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 10

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-26 09:40

text: V3 Sample 8C8

characteristic: description

text: FALSE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

text: Control

text: Volunteer 3

text: years

text: cm

text: kg

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Blank

text: control swab

text: Blank

text: metagenome

text: female

text: Time 7

characteristic: title

text: Silver

text: Week 10


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-06-02 10:00

text: V3 Sample 9D10

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Asian

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Left armpit

characteristic: sample site

text: skin

characteristic: sample type

text: LA

text: human skin metagenome

text: female

characteristic: sex

text: Time 8

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-06-02 10:00

text: V3 Sample 9D9

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 3

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: female

text: Time 8

characteristic: title

text: Silver

text: Week 11

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-06-02 10:00

text: V3 Sample 9H4

text: FALSE

text: Free-living

text: Free-living (non-saline)

text: Solid (non-saline)

text: Surface (non-saline)

text: urban biome

text: anthropogenic habitat

text: misc environment

text: anthropogenic environmental material

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: not collected

characteristic: host height

text: Volunteer 3

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Clothes Left armpit

characteristic: sample site

text: surface

characteristic: sample type

text: CLA

text: indoor metagenome

text: female

characteristic: sex

text: Time 8

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 11


characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-06 08:00

text: V4 Sample 1C2

characteristic: description

text: FALSE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

text: Control

characteristic: host common name

text: Volunteer 4

text: years

text: cm

text: kg

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Blank

text: control swab

text: Blank

text: metagenome

text: male

text: Time 0

characteristic: title

text: Personal

text: Week 3

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2017-04-06 08:00

text: V4 Sample 1C7

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 4

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Lower back

characteristic: sample site

text: skin

characteristic: sample type

text: LB

text: human skin metagenome

text: male

characteristic: sex

text: Time 0

characteristic: timepoint

text: Personal

characteristic: tshirt

text: Week 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-11 08:00

text: V4 Sample 6C5

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: no big difference in smell

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

text: Volunteer 4

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Chest

text: skin

text: C

text: human skin metagenome

text: male

text: Time 5

characteristic: title

text: Non-silver

text: Week 8

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2017-05-11 08:00

text: V4 Sample 6G9

text: FALSE

text: Free-living

text: Free-living (non-saline)

text: Solid (non-saline)

text: Surface (non-saline)

text: urban biome

text: anthropogenic habitat

text: misc environment

text: anthropogenic environmental material

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: not collected

characteristic: host height

text: Volunteer 4

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Clothes Left armpit

characteristic: sample site

text: surface

characteristic: sample type

text: CLA

text: indoor metagenome

text: male

characteristic: sex

text: Time 5

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 8


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

text: not provided

characteristic: common name

text: Portugal

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

text: public

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-204686/2021

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-189089/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-12-06

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-210630/2021

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Antwerp

text: public

characteristic: collection date

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

text: sputum

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mtb clinical isolates


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id

characteristic: title


characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-113066/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2020-12-28

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-68046/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-11-02

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: n_infections=2,last_infection_date=2020-07-13

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2021-11-08

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

text: Human

text: n_infections=2,last_infection_date=2021-05-17

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Illumina reads obtained following the Artic v3 protocol

text: Ireland

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00278383/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00278399/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00287930/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00288762/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00287771/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00287918/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00287936/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00287948/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00278255/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-ecS22IRL00278714/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Louth

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/LH-NVRL-ecS22IRL00279728/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Louth

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/LH-NVRL-ecS22IRL00287068/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Louth

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status

text: hCoV-19/Ireland/LH-NVRL-ecS22IRL00287098/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Leitrim

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/LM-NVRL-ecS22IRL00288794/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Illumina reads obtained following the Artic v3 protocol

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Leitrim

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/LM-NVRL-ecS22IRL00288809/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-ecS22IRL00288189/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-ecS22IRL00278896/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-ecS22IRL00279127/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-ecS22IRL00279092/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-ecS22IRL00278893/2022

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Meath

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/MH-NVRL-ecS22IRL00287020/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Vienna (Mollusc)

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UNIVERSITY OF VIENNA (MOLLUSC)

characteristic: barcoding center

text: COPO

text: Barb Campbell

characteristic: collected by

text: Clemson University

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

text: South Carolina | Clemson University

text: Halodule wrightii seagrass and algae

characteristic: habitat

text: Laurie Anderson

characteristic: identified by

text: South Dakota School of Mines and Technology

text: adult

characteristic: lifestage

text: Lucinisca nassula

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: USA

characteristic: original collection location

text: ASG

characteristic: project name

text: Lucinisca nassula

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: f9a62726-eb34-450d-a9b3-5ddef34bbfee-ASG-specimen

characteristic: title

characteristic: tolid


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id


text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: DAVID LEES

characteristic: collected by

text: NATURAL HISTORY MUSEUM

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland|United Kingdom|Scotland|Beinn Eighe National Nature Reserve National Nature Reserve

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: DAVID LEES

characteristic: identified by

text: NATURAL HISTORY MUSEUM

text: adult

characteristic: lifestage

text: Aporophyla nigra

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Aporophyla nigra

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: ed82a783-5823-444e-bb5d-eadb1d2330db-DTOL-specimen

characteristic: title

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: MAXWELL BARCLAY

text: NATURAL HISTORY MUSEUM

text: United Kingdom

text: England|Nearest Named Place: Great Bookham Common

text: NOT COLLECTED

text: MAXWELL BARCLAY

text: NATURAL HISTORY MUSEUM

text: not collected

text: Byturus ochraceus

text: WHOLE ORGANISM

text: DTOL

text: Byturus ochraceus

text: NOT COLLECTED

text: 5843fc8d-e1cd-4b4f-a519-90ae3dba882d-DTOL-specimen

characteristic: tolid


text: Natural History Museum

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

text: MAXWELL BARCLAY

characteristic: collected by

text: NATURAL HISTORY MUSEUM

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: MAXWELL BARCLAY

characteristic: identified by

text: NATURAL HISTORY MUSEUM

text: not collected

characteristic: lifestage

text: Oulema obscura

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Oulema obscura

text: NOT COLLECTED

characteristic: sex

text: a87104bf-5e71-44a4-806b-63a6f8c42569-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: MAXWELL BARCLAY

text: NATURAL HISTORY MUSEUM

text: United Kingdom

text: England|Nearest Named Place: West Brompton Cemetery

text: NOT COLLECTED

text: MAXWELL BARCLAY

text: NATURAL HISTORY MUSEUM

text: not collected

text: Limonius poneli

text: WHOLE ORGANISM

text: DTOL

text: Limonius poneli

text: NOT COLLECTED

characteristic: specimen id

text: c3082d76-7512-4800-8bf0-f755633e913a-DTOL-specimen

characteristic: title


text: Natural History Museum

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: OLGA SIVELL | DUNCAN SIVELL | RYAN MITCHELL | JUDY WEBB

characteristic: collected by

text: NATURAL HISTORY MUSEUM | NATURAL HISTORY MUSEUM

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: England|Township: Cothill

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: DUNCAN SIVELL

characteristic: identified by

text: NATURAL HISTORY MUSEUM

text: adult

characteristic: lifestage

text: Rhagio lineola

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Rhagio lineola

text: MALE

text: 631d18af-2860-466c-a3d5-9738d2d5bcf3-DTOL-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: public

tag: Namespace:Norwegian Institute of Public Health (NIPH)

text: Kathrine Stene-Johansen, Kamilla Heddeland Instefjord, Hilde Elshaug, Garcia Llorente Ignacio, Jon Bråte, Engebretsen Serina Beate, Pedersen Benedikte Nevjen, Line Victoria Moen, Hilde Nordby Falkenhaug, Debech Nadia, Atiya R Ali, Marie Paulsen Madsen, Rasmus Riis Kopperud, Hilde Vollan, Karoline Bragstad, Olav Hungnes

characteristic: authors

text: ELIXIR-Norway

characteristic: broker name

text: Unilabs Laboratory Medicine ; Leirvollen 19, N-3736 Skien, Norway

text: not provided

characteristic: collector name

text: Norway

text: Oslo

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: not provided

characteristic: isolation source host associated


characteristic: External Id

text: Centro Nacional de Análisis Genómico

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: ROSA FERNANDEZ

characteristic: collected by

text: INSTITUTE OF EVOLUTIONARY BIOLOGY - SPANISH RESEARCH COUNCIL

characteristic: collecting institution

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: 30 cm

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Catalonia | Barcelona | Sant Esteve de Palautordera

characteristic: geographic location (region and locality)

text: Seasonal spring

characteristic: habitat

text: ANDREAS SCHMIDT-RHAESA

characteristic: identified by

text: Leibniz Institut für die Analyse des Biodiversitätswandels

text: adult

characteristic: lifestage

text: Gordius albopunctatus

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: SPAIN

characteristic: original collection location

text: ERGA

characteristic: project name

text: ROSA FERNANDEZ

characteristic: sample coordinator

characteristic: sample coordinator ORCID ID

characteristic: sample coordinator affiliation

text: Gordius albopunctatus

text: NOT COLLECTED

characteristic: sex

text: ERGA RF 6640 08

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: f80e858c-445d-49a0-8456-bb77e22182d5-ERGA-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Dr. Risch

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collecting institution

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GR

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GR-Risch-2250300549/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Nordjylland

text: Human

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Illumina reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Laois

characteristic: host age

text: human

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: organism

text: hCoV-19/Ireland/LS-NVRL-ecS22IRL00169582/2022

characteristic: title

characteristic: virus identifier