text: no

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text: no

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text: no

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text: Taeniopygia guttata

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text: no

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text: no

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text: no

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text: no

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text: Taeniopygia guttata

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text: yes

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characteristic: INSDC first public

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text: yes

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characteristic: broad-scale environmental context

text: Feacal microbiota of conspecific and heterospecific cross-fostered zebra finches and Bengalese finches under controlled conditions during three mongths of life.

characteristic: description

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text: Taeniopygia guttata

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

text: WWU

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text: Taeniopygia guttata

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

text: WWU

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text: yes

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text: Feacal microbiota of conspecific and heterospecific cross-fostered zebra finches and Bengalese finches under controlled conditions during three mongths of life.

text: fecal material

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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text: yes

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characteristic: INSDC first public

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text: yes

text: WWU

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text: Feacal microbiota of conspecific and heterospecific cross-fostered zebra finches and Bengalese finches under controlled conditions during three mongths of life.

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text: yes

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text: Germany

text: Taeniopygia guttata

characteristic: host scientific name

text: Female

text: intestine environment

characteristic: local environmental context

text: bird metagenome

text: Day 005

text: bird metagenome

text: MiSeq

text: Zebra Finch

text: Zebra_Finch_Female_chick_Day_005_OM21_OM22


text: yes

text: WWU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: chick

text: microbial community

text: fecal material

text: Own chick

text: Germany

characteristic: geographic location (longitude)

characteristic: group

text: Taeniopygia guttata

text: Female

text: intestine environment

text: bird metagenome

text: Day 005

text: bird metagenome

text: MiSeq

text: Zebra Finch

text: Zebra_Finch_Female_chick_Day_005_OM22_OM22


text: ETH ZURICH

text: public

tag: Namespace:ETH ZURICH

text: testis

text: cattle

characteristic: common name

text: bull

characteristic: description

text: Bos taurus

characteristic: organism

text: Bos taurus

text: taurine


characteristic: ENA-CHECKLIST

text: Dalhousie University

text: public

text: ena-SAMPLE-TAB-07-09-2022-14:23:26:218-77827

tag: Namespace:Dalhousie University

text: ZymoBIOMICS mock community standard with known proportions in terms of the genomic DNA

text: mixed culture metagenome

text: mixed culture metagenome

text: ZymoMock

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The University of Exeter

text: public

tag: Namespace:The University of Exeter

text: Suspected envirnmental isolate

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii


characteristic: External Id

text: The University of Exeter

characteristic: INSDC center name

text: public

text: Suspected envirnmental isolate

text: Acinetobacter oleivorans

text: Acinetobacter oleivorans

text: Acinetobacter oleivorans


text: The University of Exeter

text: public

text: Suspected envirnmental isolate

text: Acinetobacter calcoaceticus

text: Acinetobacter calcoaceticus

text: Acinetobacter calcoaceticus


E-MTAB-12140:Sample 1

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 1

tag: Namespace:PhD student, WIS

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: Protocols: Individual Day 6 EiTiX-embryoids were dissected into four pieces with needles in PBS which were then dissociated with 70μl TrypLE Express Enzyme (Gibco 12604021) at 37ºC for 15 minutes, pipetting up and down every 5 minutes. Dissociation was stopped by adding 500μl FC media supplemented with Y27632 (1:2,000) and DAPI (1:2,000). Day 8 samples were dissociated with 200μl TrypLE Express Enzyme and 800μl media was added to stop the dissociation. The cell suspension was subsequently filtered through a 40μm cell strainer (Merck CLS431750) and further diluted with 2ml FC media. It was then sorted by FACSAria III (BD Biosciences) using index sorting into 384-well plates. Extraction of Single-cell RNA were prepared as previously described (Cheng et al., 2021;Mittnenzweig et al., 2021) following the MARS-seq protocol (Jaitin et al., 2014; Keren-Shaul et al., 2019). Single-cell cDNA libraries were prepared as previously described (Cheng et al., 2021;Mittnenzweig et al., 2021) following the MARS-seq protocol (Jaitin et al., 2014; Keren-Shaul et al., 2019).

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 1


E-MTAB-12140:Sample 5

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 5


E-MTAB-12140:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 6

characteristic: title


E-MTAB-12140:Sample 4

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 4

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 4


E-MTAB-12140:Sample 7

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 7


E-MTAB-12140:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 10

characteristic: title


E-MTAB-12140:Sample 14

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 14

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 14


E-MTAB-12140:Sample 21

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 21


E-MTAB-12140:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 23

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 23

characteristic: title


E-MTAB-12140:Sample 26

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 26

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 26


E-MTAB-12140:Sample 30

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 30

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 30


E-MTAB-12140:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 33

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 33

characteristic: title


E-MTAB-12140:Sample 38

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 38

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 38


E-MTAB-12140:Sample 39

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 39

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 39


E-MTAB-12140:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 43

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 43

characteristic: title


E-MTAB-12140:Sample 44

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 44

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 44


E-MTAB-12140:Sample 50

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 50

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 50


E-MTAB-12140:Sample 52

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 52

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 52

characteristic: title


E-MTAB-12140:Sample 70

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 70

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 70


E-MTAB-12140:Sample 64

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 64

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 64


E-MTAB-12140:Sample 61

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 61

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 61

characteristic: title


E-MTAB-12140:Sample 65

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 65

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 65


E-MTAB-12140:Sample 76

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 76

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 76


E-MTAB-12140:Sample 74

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 74

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 74

characteristic: title


E-MTAB-12140:Sample 75

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 75

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 75


E-MTAB-12140:Sample 72

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 72

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 72


E-MTAB-12140:Sample 79

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 79

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 79

characteristic: title


E-MTAB-12140:Sample 80

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 80

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 80


E-MTAB-12140:Sample 82

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 82

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 82


E-MTAB-12140:Sample 85

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 85

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 85

characteristic: title


E-MTAB-12140:Sample 98

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 98

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 98


E-MTAB-12140:Sample 88

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 88

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 88


E-MTAB-12140:Sample 84

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 84

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 84

characteristic: title


E-MTAB-12140:Sample 83

text: PhD student, WIS

text: public

text: E-MTAB-12140:Sample 83

text: ArrayExpress

text: Singe cell

text: house mouse

text: embryo stage

characteristic: developmental stage

characteristic: embryo

characteristic: experiment

characteristic: genotype

text: not applicable

characteristic: isolate

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

characteristic: plate

text: Mus musculus

characteristic: strain

text: Sample 83


E-MTAB-12140:Sample 243

text: PhD student, WIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12140:Sample 243

characteristic: Submitter Id

text: ArrayExpress

text: Singe cell

text: house mouse

characteristic: common name

characteristic: description

text: embryo stage

text: not applicable

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 243


E-MTAB-12140:Sample 244

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student, WIS

characteristic: INSDC center name

text: public

text: E-MTAB-12140:Sample 244

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Singe cell

text: house mouse

text: embryo stage

text: not applicable

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: Sample 244

characteristic: title