characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: batch

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: mature, gd+

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Institute of Human Genetics Polish Academy of Sciences

unit: year

text: ArrayExpress

characteristic: broker name

text: under 15 to 39 at age of diagnosis

characteristic: clinical history

text: minimal residual disease high risk group

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: T-cell acute lymphoblastic leukemia cells were obtained from bone marrow samples collected at diagnosis, by isolation of mononuclear cells, using density gradient centrifugation, followed by mmunomagnetic separation (Human T Lymphocyte Enrichment Set-DM, Becton Dickinson) in case of samples with low blast count. Thymocyte CD4+CD8+ and CD34+ samples were obtained from children undergoing cardiac surgery. Immature CD34+ thymocytes were purified based on MACS purification using CD34 microbeads (Miltenyi Biotec) without lineage depletion, while CD4 and CD8 labeling was used to sort the CD4+CD8+ double positive subset by a FACSAriaIII (BDBiosciences). Total RNA was isolated using miRCURY RNA Isolation Kit Cell & Plant (Exiqon) or Trizol reagent. RNA isolates were DNase treated and purified with use of RNA Clean and Concentrator Kit (Zymo Research). The library preparation was done using the QIAseq miRNA Library Kit (QIAGEN). A total of 100 ng RNA was converted into microRNA NGS libraries. Adapters containing UMIs were ligated to the RNA. Then RNA was converted to cDNA. The cDNA was amplified using PCR (16 cycles) and during the PCR indices were added. After PCR the samples were purified. Library preparation QC was performed using Bioanalyzer 2100 (Agilent). Based on quality of the inserts and the concentration measurements the libraries were pooled in equimolar ratios.

characteristic: description

text: infant

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: mature, gd+

characteristic: immunophenotype

text: yes

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


text: Institute of Human Genetics Polish Academy of Sciences

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: batch

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: infant

text: T-cell acute lymphoblastic leukemia

text: mature, gd+

characteristic: individual

text: yes

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: under 15 to 39 at age of diagnosis

characteristic: clinical history

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: infant

text: T-cell acute lymphoblastic leukemia

text: mature, ab+

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: batch

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: mature, ab+

characteristic: immunophenotype

text: no

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: mature, gd+

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: under 15 to 39 at age of diagnosis

characteristic: clinical history

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: aged 15 to 39 at time of diagnosis

text: human

text: juvenile stage

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

text: no

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: minimal residual disease intermediate risk group

text: human

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease staging

text: pre-T

characteristic: immunophenotype

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: under 15 to 39 at age of diagnosis

characteristic: clinical history

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: pre-T

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: pre-T

characteristic: immunophenotype

text: yes

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

characteristic: batch

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: common, CD3+

characteristic: individual

text: yes

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: under 15 to 39 at age of diagnosis

characteristic: clinical history

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: cortical

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

characteristic: batch

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: mature, ab+

characteristic: immunophenotype

text: no

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: aged 15 to 39 at time of diagnosis

text: human

text: adult

text: T-cell acute lymphoblastic leukemia

text: ETP

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: aged 15 to 39 at time of diagnosis

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: T-cell acute lymphoblastic leukemia

text: pro-T

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: aged 15 to 39 at time of diagnosis

text: human

text: adult

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: pro-T

characteristic: immunophenotype

text: no

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: pre-T

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: aged 15 to 39 at time of diagnosis

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: T-cell acute lymphoblastic leukemia

text: pre-T

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: pre-T

characteristic: immunophenotype

text: no

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: aged 15 to 39 at time of diagnosis

text: human

text: juvenile stage

text: T-cell acute lymphoblastic leukemia

text: pre-T

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: aged 15 to 39 at time of diagnosis

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: T-cell acute lymphoblastic leukemia

text: cortical

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: under 15 to 39 at age of diagnosis

text: human

text: juvenile stage

characteristic: developmental stage

text: T-cell acute lymphoblastic leukemia

characteristic: disease

characteristic: disease staging

text: mature, ab+

characteristic: immunophenotype

text: no

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: aged 15 to 39 at time of diagnosis

text: human

text: adult

text: T-cell acute lymphoblastic leukemia

characteristic: individual

text: no

characteristic: inter-batch control

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: less than 18

characteristic: age

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: normal

text: no

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: Winogradsky column

characteristic: broad-scale environmental context

unit: cm

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BRU

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

characteristic: local environmental context

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

characteristic: pH

text: Organic carbon amendment stimulates biosulfidogenesis in AMD

characteristic: project name

text: Winogradsky column metagenome

characteristic: sequencing method

characteristic: sitedepth

text: A

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

text: slurry

text: Spain

text: BRU

text: metagenome

text: Winogradsky column

text: Winogradsky column metagenome

text: Winogradsky column metagenome

unit: ºC

characteristic: temperature

characteristic: title

text: A


text: public

text: Winogradsky column

characteristic: broad-scale environmental context

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BRU

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

characteristic: local environmental context

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

characteristic: pH

text: Winogradsky column metagenome

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Winogradsky column

text: slurry

text: Spain

text: BRU

text: metagenome

text: Winogradsky column

text: Winogradsky column metagenome

characteristic: project name

text: Winogradsky column metagenome

characteristic: sequencing method

characteristic: sitedepth

text: B

characteristic: treatment


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: BRU

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

text: Winogradsky column metagenome

text: Winogradsky column metagenome

characteristic: title

text: C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Winogradsky column

text: slurry

text: Spain

text: BRU

text: metagenome

text: Winogradsky column

characteristic: local environmental context

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

characteristic: pH

text: Winogradsky column metagenome

characteristic: temperature

text: D


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: BRU

text: metagenome

text: Winogradsky column

text: Winogradsky column metagenome

characteristic: project name

text: Winogradsky column metagenome

characteristic: sequencing method

characteristic: sitedepth

text: C

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Winogradsky column

text: slurry

text: Spain

characteristic: geographic location (longitude)

text: FC

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

characteristic: local environmental context

text: Winogradsky column metagenome

text: Winogradsky column metagenome

characteristic: title

text: A


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: FC

text: metagenome

text: Winogradsky column

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

characteristic: pH

text: Winogradsky column metagenome

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Winogradsky column

text: slurry

text: Spain

text: FC

text: metagenome

text: Winogradsky column

text: Winogradsky column metagenome

characteristic: project name

text: Winogradsky column metagenome

characteristic: sequencing method

characteristic: sitedepth

text: C

characteristic: treatment


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (longitude)

text: GUA

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

characteristic: local environmental context

text: Winogradsky column metagenome

text: Winogradsky column metagenome

characteristic: title

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Winogradsky column

text: slurry

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: GUA

text: metagenome

text: Winogradsky column

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

characteristic: pH

text: Winogradsky column metagenome

text: B


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

text: GUA

text: metagenome

text: Winogradsky column

text: Winogradsky column metagenome

characteristic: project name

text: Winogradsky column metagenome

characteristic: sequencing method

characteristic: sitedepth

text: C

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Winogradsky column

text: slurry

text: Spain

characteristic: geographic location (longitude)

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

characteristic: local environmental context

text: Winogradsky column metagenome

text: Winogradsky column metagenome

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

text: NEG

characteristic: collection date

text: slurry

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: NEG

text: metagenome

text: Winogradsky column

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

text: Winogradsky column metagenome

text: NEG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Winogradsky column

text: slurry

characteristic: environmental medium

text: Spain

text: metagenome

text: Winogradsky column

text: Winogradsky column metagenome

characteristic: pH

characteristic: project name

text: Winogradsky column metagenome

characteristic: sequencing method

characteristic: sitedepth

text: A

characteristic: treatment


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Winogradsky column

characteristic: broad-scale environmental context

text: slurry

text: Spain

characteristic: geographic location (longitude)

characteristic: inoculum

text: metagenome

characteristic: investigation type

text: Winogradsky column

characteristic: local environmental context

text: Winogradsky column metagenome

text: Winogradsky column metagenome

characteristic: title

text: B


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Winogradsky column

characteristic: collection date

text: slurry

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: Winogradsky column

characteristic: miscellaneous environmental package

text: Winogradsky column metagenome

characteristic: organism

text: Winogradsky column metagenome

text: C


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Scottish Microbiology Reference Laboratories

characteristic: Submitter Id

characteristic: broad-scale environmental context

unit: m

characteristic: depth

text: Aquaculture pond water Jul-Aug 2017

characteristic: description

text: Bangladesh

text: In-house protocol available at dx.doi.org/10.17504/protocols.io.bw8gphtw

characteristic: nucleic acid extraction

text: aquaculture metagenome

text: Microbiomes of small-scale aquaculture ponds in Bangladesh

characteristic: project name

text: aquaculture metagenome

text: Illumina NovaSeq 6000 S1 Reagent Kit, paired-end 300 cycles

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 1 monsoon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Scottish Microbiology Reference Laboratories

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Oct-Nov 2017

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 1 post-monsoon

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Jan-Feb 2018

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 1 winter


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Apr-May 2018

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 1 pre-monsoon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Jul-Aug 2017

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 2 monsoon

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Oct-Nov 2017

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 2 post-monsoon


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Jan-Feb 2018

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 2 winter


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Apr-May 2018

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 2 pre-monsoon

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Jul-Aug 2017

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 3 monsoon


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Oct-Nov 2017

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 3 post-monsoon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Jan-Feb 2018

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 3 winter

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Apr-May 2018

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 3 pre-monsoon


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Jul-Aug 2017

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 4 monsoon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Oct-Nov 2017

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: In-house protocol available at dx.doi.org/10.17504/protocols.io.bw8gphtw

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 4 post-monsoon

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Jan-Feb 2018

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: Microbiomes of small-scale aquaculture ponds in Bangladesh

text: aquaculture metagenome

text: Illumina NovaSeq 6000 S1 Reagent Kit, paired-end 300 cycles

text: Bangladesh aquaculture pond water, farm 4 winter


characteristic: ENA-CHECKLIST

text: Scottish Microbiology Reference Laboratories

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Apr-May 2018

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 4 pre-monsoon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Jul-Aug 2017

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 6 monsoon

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Oct-Nov 2017

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 6 post-monsoon


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Jan-Feb 2018

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 6 winter


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Apr-May 2018

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 6 pre-monsoon

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Jul-Aug 2017

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 8 monsoon


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: depth

text: Aquaculture pond water Oct-Nov 2017

characteristic: description

text: Bangladesh

characteristic: nucleic acid extraction

text: aquaculture metagenome

characteristic: project name

text: aquaculture metagenome

characteristic: sequencing method

text: Bangladesh aquaculture pond water, farm 8 post-monsoon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: Aquaculture pond water Jan-Feb 2018

text: Bangladesh

characteristic: geographic location (longitude)

characteristic: local environmental context

text: aquaculture metagenome

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 8 winter

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aquaculture pond water Apr-May 2018

characteristic: environmental medium

text: Bangladesh

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: aquaculture metagenome

characteristic: organism

text: aquaculture metagenome

text: Bangladesh aquaculture pond water, farm 8 pre-monsoon


characteristic: ENA-CHECKLIST

text: University of Greifswald

text: public

tag: Namespace:University of Greifswald

characteristic: Submitter Id

text: Sea

characteristic: broad-scale environmental context

characteristic: description

text: Intestine

text: Germany

text: Sea Urchin

text: soil metagenome

text: Microbiome

characteristic: project name

text: soil metagenome

text: Miseq

characteristic: sequencing method

text: before

characteristic: time

text: before

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Greifswald

characteristic: INSDC center name

text: public

text: F.serratus

characteristic: alga

text: Sea

characteristic: collection date

text: Intestine

text: Germany

characteristic: geographic location (longitude)

text: Sea Urchin

characteristic: local environmental context

text: soil metagenome

text: Microbiome

text: soil metagenome

text: Miseq

characteristic: tank

text: after

characteristic: title

text: fucus


characteristic: ENA-CHECKLIST

text: University of Greifswald

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Control

text: Sea

text: Intestine

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Sea Urchin

text: soil metagenome

characteristic: organism

text: Microbiome

text: soil metagenome

text: Miseq

text: after

text: control


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Greifswald

characteristic: INSDC center name

text: public

text: P.palmata

text: Sea

characteristic: broad-scale environmental context

characteristic: description

text: Intestine

text: Germany

text: Sea Urchin

text: soil metagenome

text: Microbiome

characteristic: project name

text: soil metagenome

text: Miseq

characteristic: sequencing method

text: after

characteristic: time

text: palmaria

characteristic: treatment


characteristic: ENA-CHECKLIST

text: University of Greifswald

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: S.latissima

characteristic: alga

text: Sea

characteristic: collection date

text: Intestine

text: Germany

characteristic: geographic location (longitude)

text: Sea Urchin

characteristic: local environmental context

text: soil metagenome

text: Microbiome

text: soil metagenome

text: Miseq

characteristic: tank

text: after

characteristic: title

text: saccharina


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Greifswald

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sea

text: Intestine

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Sea Urchin

text: soil metagenome

characteristic: organism

text: Microbiome

text: soil metagenome

text: Miseq

text: neg-ctrl

text: neg


Specimen Kendricks Cave SC112

characteristic: ENA-CHECKLIST

text: The Francis Crick Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Specimen Kendricks Cave SC112

tag: Namespace:The Francis Crick Institute

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: tooth

characteristic: tissue type

text: Specimen Kendricks Cave


Specimen Kendricks Cave SC112C

characteristic: ENA-FIRST-PUBLIC

text: The Francis Crick Institute

text: public

text: Specimen Kendricks Cave SC112C

text: human

text: Homo sapiens

text: Homo sapiens

text: tooth

text: Specimen Kendricks Cave

characteristic: title


Specimen Kendricks Cave SC112D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Francis Crick Institute

text: public

text: Specimen Kendricks Cave SC112D

text: human

text: Homo sapiens

text: Homo sapiens

text: tooth

text: Specimen Kendricks Cave


Specimen Kendricks Cave SC112E

text: The Francis Crick Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Specimen Kendricks Cave SC112E

text: human

text: Homo sapiens

text: Homo sapiens

text: tooth

text: Specimen Kendricks Cave


Specimen Kendricks Cave SC206

text: The Francis Crick Institute

text: public

text: Specimen Kendricks Cave SC206

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: tooth

text: Specimen Kendricks Cave


Specimen Kendricks Cave SC206B

text: The Francis Crick Institute

text: public

text: Specimen Kendricks Cave SC206B

text: human

text: Homo sapiens

text: Homo sapiens

text: tooth

text: Specimen Kendricks Cave


Specimen Goughs Cave SB392B

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392B

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392Bb

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392Bb

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392B2

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392B2

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392B3

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392B3

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392B4

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392B4

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392B5

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392B5

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392B6

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392B6

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392C

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392C

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392Db

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392Db

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


Specimen Goughs Cave SB392D3

text: The Francis Crick Institute

text: public

text: Specimen Goughs Cave SB392D3

text: human

text: Homo sapiens

text: Homo sapiens

text: petrous

text: Specimen Goughs Cave


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles arabiensis

text: SC

text: public

text: Anopheles arabiensis

text: Anopheles arabiensis

text: Anopheles arabiensis


text: Anopheles funestus

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus


text: Anopheles funestus

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles funestus

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

characteristic: subject id


text: Anopheles arabiensis

text: SC

text: public

text: Anopheles arabiensis

text: Anopheles arabiensis

characteristic: organism

text: Anopheles arabiensis


text: Anopheles gambiae

characteristic: ENA-CHECKLIST

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Clinical Microbiomics

characteristic: INSDC first public

text: public

tag: Namespace:Clinical Microbiomics

characteristic: collection date

text: Effects of 2-fucosyllactose (2FL) on the infant microbiome. Cohorts consists of breastfed and formula fed infants

text: human

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Test Formula

characteristic: host diet

text: male

characteristic: host sex

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human feces metagenome

text: Shotgun metagenomics of infant formula study

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: USA

characteristic: country

text: Serratia marcescens

text: Serratia marcescens

characteristic: strain

characteristic: title


text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles funestus

characteristic: organism

text: Anopheles funestus

text: Anopheles funestus


text: Anopheles gambiae

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

text: Anopheles gambiae


text: LUMC

text: public

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell

text: human

text: Protocols: Approximately 1x10^6 hiPSCs (cell line described here: https://hpscreg.eu/cell-line/LUMCi028-A) were rinsed once with PBS without Mg2+ and Ca2+ (PBS-/-) and dissociated to single cells with 1x TrypLE Select (ThermoFisher). The dissociation reagent was neutralized with culture medium (DMEM/F12, BSA 0.5%) and the pellet of cells was resuspended in PBS-/- and kept at -20°C until the genomic DNA extraction protocol was performed. Genomic DNA was extracted from hiPSCs using the High Pure PCR Template Preparation Kit (Roche) and treated with RNAse A (10 mg/ml, Invitrogen) according to the manufacturers’ instructions. 500 ng of gDNA was fragmented by sonication, followed by Illumina library prep using the KAPA Hyper Kit and unique barcoding of each sample with IDT adapters (xGen UDI-UMI adapters). The samples were purified twice to remove any adapter dimers and fragments below 150bp. The adapter ligated samples were further PCR enriched using the p5 and p7 primers for 10x cycles using the KAPA HiFi mastermix.The Hyb Module box of the SureSelectQXT Target Enrichment for the Illumina Platform (Agilent) was used for hybridization and capturing of each sample separately. Briefly, 750 ng of the Illumina-prepped sample and 500ng of the biotinylated RNA capture probes were used in the reaction. A 15 cycle post capture PCR with the p5 and p7 primers was performed using the KAPA HiFi mastermix, with the resulting samples purified using 0.8x Ampure XP beads (Beckman Coulthier) and quantified using the Qubit 2.0 (ThermoFisher).

characteristic: description

text: adult

characteristic: developmental stage

text: Familial long QT syndrome

characteristic: disease

characteristic: genetic modification

text: genetically modified genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUMC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: adult

text: Familial short QT syndrome

text: genetically modified genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: LUMC

characteristic: INSDC first public

text: public

text: E-MTAB-11971:SV-FLB_6-4_parental_KCNH2_wt-wt

text: ArrayExpress

text: induced pluripotent stem cell

text: human

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens

characteristic: title


text: LUMC

text: public

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell

text: human

text: Protocols: Approximately 1x10^6 hiPSCs (cell line described here: https://hpscreg.eu/cell-line/LUMCi028-A) were rinsed once with PBS without Mg2+ and Ca2+ (PBS-/-) and dissociated to single cells with 1x TrypLE Select (ThermoFisher). The dissociation reagent was neutralized with culture medium (DMEM/F12, BSA 0.5%) and the pellet of cells was resuspended in PBS-/- and kept at -20°C until the genomic DNA extraction protocol was performed. Genomic DNA was extracted from hiPSCs using the High Pure PCR Template Preparation Kit (Roche) and treated with RNAse A (10 mg/ml, Invitrogen) according to the manufacturers’ instructions. The nucleic acid library was constructed using the NEBNext® Ultra II FS DNA and Ligation kits to fragment, A-tail and ligate sequencing adapters to the genomic DNA. The size of the resulting product was approximately 500-700 bp.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: NC_000019.10:g.55115766_55115767ins[N[?];NC_000007.14:g.150848452_151010445;N[?]]

characteristic: genetic modification

text: genetically modified genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LUMC

text: public

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: adult

text: normal

text: genetically modified genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens


characteristic: External Id

text: LUMC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: adult

text: normal

text: NM_000238.4:c.1733 A>C

text: genetically modified genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: LUMC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

characteristic: common name

text: adult

text: normal

text: genetically modified genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens


text: LUMC

text: public

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: genetically modified genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LUMC

text: public

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: fibroblast

text: Homo sapiens


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ena-upload-cli

tag: Namespace:Clinical Bioinformatics Area

text: Servicio de Microbiologia, Hospital Virgen Macarena, Sevilla, Spain

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00003, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00005, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00007, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Punta de Europa, Algeciras, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00008, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00010, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Urgencias, Hospital Santa Ana, Motril, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00012, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Complejo Hospitalario de Jaen, Jaen, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00014, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00015, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital de Antequera, Antequera, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00016, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario San Cecilio, Granada, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00017, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Costa del Sol, Marbella, Spain

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: active surveillance in response to outbreak

text: Monkeypox virus

text: ANDmpxv00018, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00019, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Virgen de la Victoria, Malaga, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00020, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00021, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00022, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00023, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00025, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00027, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00028, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00029, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Quironsalud Malaga, Malaga, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00030, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00031, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00032, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Reina Sofia, Cordoba, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00033, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Punta de Europa, Algeciras, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00035, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00041, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00046, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00048, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00051, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Infanta Elena, Huelva, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00053, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Virgen Macarena, Sevilla, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00054, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00055, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00056, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital de Montilla, Montilla, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00058, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Puerta del Mar, Cadiz, Spain

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00060, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Virgen de Valme, Sevilla, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: active surveillance in response to outbreak

text: Monkeypox virus

text: ANDmpxv00061, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00064, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital La Merced, Osuna, Spain

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00066, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00067, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00069, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Urgencias, Hospital Santa Ana, Motril, Spain

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00071, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Virgen de la Victoria, Malaga, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00074, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00075, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00076, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00077, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00080, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00081, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario San Cecilio, Granada, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: active surveillance in response to outbreak

text: Monkeypox virus

text: ANDmpxv00085, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00089, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00090, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00092, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Reina Sofia, Cordoba, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00095, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00096, Monkeypox virus, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Virgen de Valme, Sevilla, Spain

characteristic: collection date

text: not provided

characteristic: collector name

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

text: Monkeypox virus

text: ANDmpxv00097, Monkeypox virus, WGS, Andalusia Region


characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Puerta del Mar, Cadiz, Spain

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

text: Spain

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Monkeypox virus

characteristic: sample capture status

text: Monkeypox virus

text: ANDmpxv00098, Monkeypox virus, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Clinical Bioinformatics Area

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Juan Ramon Jimenez, Huelva, Spain

characteristic: collecting institution

text: not provided

text: Monkeypox virus, WGS, Andalusia Region

characteristic: description

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

text: ANDmpxv00100, Monkeypox virus, WGS, Andalusia Region

characteristic: title