text: CNRS UMR 5288

text: public

text: kiang

text: modern Equus kiang specimen

text: Equus kiang

text: Equus kiang

text: kiang specimen Ekiang_YP21


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS UMR 5288

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CNRS UMR 5288

characteristic: Submitter Id

text: kiang

characteristic: common name

text: modern Equus kiang specimen

characteristic: description

text: Equus kiang

characteristic: organism

text: Equus kiang

text: kiang specimen Ekiang_ZYL

characteristic: title


text: CNRS UMR 5288

text: public

text: kiang

text: modern Equus kiang specimen

text: Equus kiang

text: Equus kiang

text: kiang specimen Ekiang_kun1


text: CNRS UMR 5288

text: public

text: kiang

text: modern Equus kiang specimen

text: Equus kiang

text: Equus kiang

text: kiang specimen Ekiang_kun2


text: CNRS UMR 5288

text: public

text: onager

text: modern Equus hemionus specimen

text: Equus hemionus

text: Equus hemionus

text: onager specimen Eona_0230A


text: CNRS UMR 5288

text: public

text: onager

text: modern Equus hemionus specimen

text: Equus hemionus

text: Equus hemionus

text: onager specimen Eona_0261A


text: CNRS UMR 5288

text: public

text: modern Equus africanus somaliensis specimen

text: Equus asinus somalicus

text: Equus asinus somalicus

text: Somali wild ass specimen Esom_0226A


text: CNRS UMR 5288

text: public

text: modern donkey specimen sampled from Ethiopia

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_1


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_10


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_2


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_3


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_4


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_5


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_6


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_7


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_8


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ETH_9


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D2


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D7


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D9


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D10


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D11


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D13


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D14


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Iran

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen IRA_D16


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO86


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO97


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO98


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO101


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO102


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO104


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO106


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO89


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO99


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO87


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO88


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO90


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO91


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO92


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO93


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO95


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kenya

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KEN_YPO96


text: CNRS UMR 5288

text: public

text: kiang

text: modern Equus kiang specimen

text: Equus kiang

text: Equus kiang

text: kiang specimen Kia_1


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk3


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk6


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk7


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk9


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk12


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk1


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Kyrgyzstan

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen KYR_Sdonk2


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Nigeria

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen NIG_YPO62


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Nigeria

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen NIG_YPO63


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Nigeria

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen NIG_YPO64


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Nigeria

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen NIG_YPO65


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Nigeria

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen NIG_YPO66


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Nigeria

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen NIG_YPO67


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Andalusian_1


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Basque_10


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Basque_11


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Basque_12


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Basque_13


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_ZamoranoLeones_14


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_ZamoranoLeones_15


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_ZamoranoLeones_16


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_ZamoranoLeones_17


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Baleares_18


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Andalusian_2


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Spain

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen ESP_Andalusian_3


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Canary Islands

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen CYK_IslasCanarias_4


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen CYK_IslasCanarias_5


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen CYK_IslasCanarias_6


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen CYK_IslasCanarias_7


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen CYK_IslasCanarias_8


text: CNRS UMR 5288

text: public

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen CYK_IslasCanarias_9


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_DQFS2


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCD05


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM09


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM18


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_DQFS1


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_DQFS4


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_DQFS6


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCD01


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCD02


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCD06


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM01


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM02


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM05


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM06


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM10


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM12


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZCM17


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS02


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS03


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS04


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS05


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS06


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS07


text: CNRS UMR 5288

text: public

text: modern donkey sampled from Tibet

text: Equus asinus asinus

text: Equus asinus asinus

text: donkey specimen TIB_XZSNQS23


text: Rostock University Medical Center

text: public

tag: Namespace:Rostock University Medical Center

text: house mouse

text: Ghrelin-treated mouse with bile duct ligation No. 1

text: Mus musculus

text: Mus musculus

text: Colonic microbiome of bile duct-ligated mice


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with bile duct ligation No. 2

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with bile duct ligation No. 3

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with bile duct ligation No. 4

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with bile duct ligation No. 5

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with bile duct ligation No. 6

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 1

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 2

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 3

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 4

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 5

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 6

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 7

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with bile duct ligation No. 8

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with sham surgery No. 1

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with sham surgery No. 2

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with sham surgery No. 3

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with sham surgery No. 4

text: Mus musculus

text: Mus musculus

text: Colonic microbiome of bile duct-ligated mice


text: Rostock University Medical Center

text: public

text: house mouse

text: Ghrelin-treated mouse with sham surgery No. 5

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with sham surgery No. 1

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with sham surgery No. 3

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with sham surgery No. 4

text: Mus musculus

text: Mus musculus


text: Rostock University Medical Center

text: public

text: house mouse

text: Solvent-treated mouse with sham surgery No. 5

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:Zouves Foundation for Reproductive Medicine

text: trophectoderm biopsy

characteristic: biopsy site

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Trophectoderm biopsy standard protocol Commercial kit (Takara Bio, USA, SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing) Nextera XT kit (Illumina, USA), with a modified protocol according to SMART-Seq v4 user manual

text: embryo

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: trophectoderm

characteristic: organism part

text: aneuploid

characteristic: ploidy

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Zouves Foundation for Reproductive Medicine

text: public

text: trophectoderm biopsy

text: ArrayExpress

text: human

text: embryo

text: Homo sapiens

text: Homo sapiens

text: trophectoderm

text: aneuploid

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: trophectoderm biopsy

text: ArrayExpress

text: human

text: embryo

text: Homo sapiens

text: Homo sapiens

text: trophectoderm

text: aneuploid

text: Homo sapiens

text: male


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: trophectoderm biopsy

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: embryo

text: Homo sapiens

text: Homo sapiens

text: trophectoderm

text: euploid

text: Homo sapiens

text: male


text: public

text: trophectoderm biopsy

characteristic: biopsy site

text: ArrayExpress

characteristic: broker name

text: human

text: embryo

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: trophectoderm

text: euploid

text: Homo sapiens

text: female

characteristic: title


text: Plasmodium Falciparum 3D7

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Plasmodium Falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium Falciparum 3D7


characteristic: ENA-CHECKLIST

text: VRIJE UNIVERSITEIT BRUSSEL

text: public

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: MEGAHIT;v1.1.3;meta sensitive

characteristic: assembly software

text: default

characteristic: binning parameters

text: CONCOCT

characteristic: binning software

text: cultured dairy product

characteristic: broad-scale environmental context

characteristic: collection date

text: baker's yeast

text: Saccharomyces cerevisiae MAG obtained from a water kefir metagenome

text: food material

characteristic: environmental medium

text: Belgium

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: water kefir

text: kefir food product

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: Saccharomyces cerevisiae

characteristic: project name

characteristic: sample derived from

text: Saccharomyces cerevisiae

text: Ion Torrent PGM

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VRIJE UNIVERSITEIT BRUSSEL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MEGAHIT;v1.1.3;min-count:1, k-list: 21, 29, 39, 49, 59, 69, 79, 89, 99, 109, 119, 129, 139, 159, and 179, and min-contig-len: 1000

text: default

text: CONCOCT

text: cocoa food product

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae MAG obtained from a cocoa pulp metagenome

characteristic: description

text: food material

text: Costa Rica

text: metagenome-assembled genome

text: cocoa pulp

text: cocoa pulp

text: food fermentation metagenome

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Ion Torrent PGM

characteristic: title


characteristic: ENA-CHECKLIST

text: ETH Zurich, DBSSE

text: public

tag: Namespace:ETH Zurich, DBSSE

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neuron

text: human

text: Protocols: WT 23 day old cerebral organoids from human induced pluripotent stem cell line cell 409B2 were generated with the following protocol (Lancaster et al. 2014, https://doi.org/10.1038/nprot.2014.158 ). Single cell suspensions of 23 days old cerebral organoids were prepared using the Miltenyi Neural Tissue Dissociation Kit (P) (Miltenyi Biotec, 130-092-628) following the manufacturer’s guidelines. There were three different ways of treating the sample prior to processing. Cells were counted and directly transferred (native), fixed for 15 min in 1% PFA (PFA) or snap frozen in liquid nitrogen (snap) before transferring into Cut&Tag Wash buffer supplemented 0.01% Digitonin (20 mM HEPES pH 7.5; 150 mM NaCl; 0.5 mM Spermidine; 1× Roche Protease inhibitor cocktail). In each subexperiment, 1.5 Mio cells were used and incubated with 1.5 μg GLI3 antibody (AF3690 R&D systems). All following steps were performed as described. The proteinA-Tn5 was purified in house following Kaya-Okur, H. S. et al. 2019 (https://www.nature.com/articles/s41467-019-09982-5). Cells were counted and directly transferred into Cut&Tag Wash buffer supplemented 0.01% Digitonin (20 mM HEPES pH 7.5; 150 mM NaCl; 0.5 mM Spermidine; 1× Roche Protease inhibitor cocktail). Per experiment, 1.5 Mio cells were used and incubated with 1.5 µg GLI3 antibody (R&D systems, AF3690) . All following steps were performed as described by Kaya-Okur et al. 2019 (https://doi.org/10.1038/s41467-019-09982-5). The proteinA-Tn5 was purified in house following Kaya-Okur et al. 2019. Libraries were generated as described by Kaya-Okur et al. 2019 (https://doi.org/10.1038/s41467-019-09982-5).

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: cerebral organoid culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: dermis

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex


E-MTAB-12108:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OXFORD BROOKES UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12108:Sample 1

tag: Namespace:OXFORD BROOKES UNIVERSITY

text: ArrayExpress

text: fruit fly

text: Protocols: Approximately 5-7 x 10^7 cells were fixed at room temperature by incubation with 1% formaldehyde for ten minutes. The fixation reaction was quenched with 200mM Glycine after which cells were washed three times with 1x Phosphate Buffered Saline (1xPBS). This was followed by a ten-minute lysis on ice (Nuclear Lysis Buffer: 50mM Tris-HCL (pH 8.1), 10mM EDTA, 1% SDS, 1xRoche Complete Inhibitor) and the addition of 1.6 volumes of IP Dilution Buffer (20mM Tris-HCL (pH 8.1), 150mM NaCl, 2mM EDTA, 1% TritonX-100, 0.01% SDS, 1xRoche Complete Inhibitor). Chromatin released from lysates was fragmented to a range of 200 to 1000bp using a Diagenode Bioruptor set for 15 pulses (30 seconds ON, 30 seconds OFF). Fragmented chromatin was further diluted (five-fold) in IP dilution buffer and precleared for 3-5 hours with Protein G PLUS-Agarose beads and 3 mg of normal rabbit IgG (Insight Biotechnology and New England Biolabs). Following this precleared chromatin was either snap-frozen and stored at -80C or immediately used for ChIP. For each ChIP experiment an aliquot of chromatin deriving from approximately 1 x 107 cells was used. An aliquot of chromatin was set aside to use as an input control. ChIP samples were treated with the appropriate concentration of an antibody along with Protein G PLUS-Agarose beads and kept on a rocker at 4C overnight. After immunoprecipitation the beads were subjected to a wash with IP Dilution Buffer and two washes each with IP Wash Buffers 1 and 2 (IP Wash Buffer 1: 20mM Tris-HCL (pH 8.1), 50mM NaCl, 2mM EDTA, 1% TritonX-100, 0.1% SDS; IP Wash Buffer 2: 10mM Tris-HCl (pH 8.1), 250mM LiCl, 1mM EDTA, 1% NP-40, 1% deoxycholic acid)). They were finally washed with TE Buffer before bound chromatin-protein complexes were eluted (IP Elution Buffer: 100mM NaHCO3, 1% SDS). Eluted complexes were treated with RNase A (Invitrogen) at 37C for an hour to eliminate RNA, 180mM NaCl at 65C for 4-6 hours to reverse crosslinks, and Proteinase K (Roche) at 45C overnight to remove proteins. The aliquot kept aside as input was subjected to the same treatment. Purified DNA for ChIP and input was obtained by phenol-chloroform extraction and ethanol precipitation. The concentration of ChIP and Input DNA was checked on the Qubit fluorometer (Invitrogen). Approximately 20-50ng of the purified ChIP and Input DNA was used to generate ChIP libraries using either the NEBnext ChIP-Seq Library Prep Master Mix Kit (E6240S) or the NEBNext Ultra DNA Library Prep Kit (E7370S) according to manufacturers instructions. Adaptor-ligated DNA was amplified with 15 cycles of PCR and fragments of 250-350 bp selected by agarose gel extraction. Resulting libraries were assessed for concentration and size using the Qubit fluorometer and the Agilent2100 Bioanalyzer.

text: third instar larval stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: central nervous system

text: Drosophila melanogaster

text: male

text: Sample 1


E-MTAB-12108:Sample 2

characteristic: ENA-CHECKLIST

text: OXFORD BROOKES UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-12108:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

characteristic: common name

characteristic: description

text: third instar larval stage

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: central nervous system

text: Drosophila melanogaster

text: male

text: Sample 2

characteristic: title


E-MTAB-12108:Sample 3

text: OXFORD BROOKES UNIVERSITY

text: public

text: E-MTAB-12108:Sample 3

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: third instar larval stage

characteristic: developmental stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: central nervous system

characteristic: organism part

text: Drosophila melanogaster

text: male

text: Sample 3


E-MTAB-12108:Sample 4

characteristic: ENA-FIRST-PUBLIC

text: OXFORD BROOKES UNIVERSITY

text: public

text: E-MTAB-12108:Sample 4

text: ArrayExpress

text: fruit fly

text: third instar larval stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: central nervous system

text: Drosophila melanogaster

text: male

characteristic: sex

text: Sample 4


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Medical Research Council Unit The Gambia @LSHTM

text: Not provided

characteristic: collection date

text: Malaria sample

text: Nigeria

characteristic: geographic location (country and/or sea)

text: West Africa

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Not provided

characteristic: isolate

text: Dried blood spot

text: 9.0820? N, 8.6753? E

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided

characteristic: strain


characteristic: ENA-CHECKLIST

text: Medical Research Council Unit The Gambia @LSHTM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Not provided

text: Malaria sample

characteristic: description

text: Nigeria

text: West Africa

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 9.0820? N, 8.6753? E

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Not provided

text: Malaria sample

text: Mali

text: West Africa

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 17.5707? N, 3.9962? W

text: Plasmodium malariae

characteristic: organism

text: Plasmodium malariae

text: Not provided

characteristic: title


characteristic: External Id

text: public

text: Not provided

characteristic: collection date

text: Malaria sample

text: Cameroon

characteristic: geographic location (country and/or sea)

text: Central Africa

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 7.3697? N, 12.3547? E

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided


text: public

text: Not provided

text: Malaria sample

text: Guinea

text: West Africa

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Not provided

characteristic: isolate

text: Dried blood spot

text: 9.9456? N, 9.6966? W

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Not provided

text: Malaria sample

text: Viet Nam

text: Asia

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 34.0479? N, 100.6197? E

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Not provided

text: Malaria sample

characteristic: description

text: Tanzania

text: East Africa

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 6.3690? S, 34.8888? E

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Not provided

text: Malaria sample

text: Burkina Faso

text: West Africa

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 12.2383? N, 1.5616? W

text: Plasmodium malariae

characteristic: organism

text: Plasmodium malariae

text: Not provided

characteristic: title


characteristic: External Id

text: public

text: Not provided

characteristic: collection date

text: Malaria sample

text: Ghana

characteristic: geographic location (country and/or sea)

text: West Africa

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: Not provided

text: Dried blood spot

text: 7.9465? N, 1.0232? W

text: Plasmodium malariae

text: Plasmodium malariae

text: Not provided


text: public

tag: Namespace:The First Affiliated Hospital, Zheng Zhou University.

text: BALF

text: metagenome

text: metagenome

text: BALF


text: The First Affiliated Hospital, Zheng Zhou University.

text: public

text: BALF

text: metagenome

text: metagenome

text: BALF


text: public

tag: Namespace:Wallenberg Centre for Molecular Medicine (WCMM), Linkoping University, Linkoping, Sweden Department of Biomedical and Clinical Sciences (BKV), Linkoping University, Linkoping, Sweden

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: HCT116 cells were grown on a 6 well-plate, treated with 10nM LGK974 and transfected with empty vector or FOXQ1. Flag-FOXQ1 and empty vector control (pCS2+N-Flag) were transfected using the jetOPTIMUS transfection reagents (Polyplus Transfection, Illkirch, France) according to the suppliers recommendations. HCT116 cells were plated in a 6-well plate and 1ug/well of each of the plasmids was used for transfection. After transfection, cells were treated overnight with 100 ng/mL recombinant human WNT3A protein. Each condition was performed in biological triplicates. Total RNA was isolated after 24 hours from transfection using a Qiagen RNeasy mini kit (Hilden, Germany). Library preparation was performed using the NEBNext RNA Library Prep Kit (NEB, UK).RNA and cDNA quality were assessed using the 2100 Bioanalyzer instrument (Agilent) and the Fragment analyzer System (Agilent) respectively.

text: adult

characteristic: developmental stage

text: colorectal carcinoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mixed large intestine and colon

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Wallenberg Centre for Molecular Medicine (WCMM), Linkoping University, Linkoping, Sweden Department of Biomedical and Clinical Sciences (BKV), Linkoping University, Linkoping, Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: colorectal carcinoma

text: Homo sapiens

text: Homo sapiens

text: mixed large intestine and colon

text: wild type phenotype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: colorectal carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mixed large intestine and colon

text: FOXQ1 overexpression

text: Homo sapiens

characteristic: title


E-MTAB-12110:DD 1

text: public

text: E-MTAB-12110:DD 1

tag: Namespace:Department of Biostatistics, University of Florida

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Protocols: In vivo or in vitro mRNA interactome profiles of FLAG-tagged WT and Delta NLS1/2 mutant were determined, each condition in duplicate, as follows. Condition I: in vitro. Purified Xrn1 samples were reacted in vitro with affinity purified poly(A)+ cellular mRNAs (purified using oligo(dT)20 beads) followed by RIP-seq. Condition II: in vivo. Cells were UV crosslinked in-vivo using Vari-X-Link UV-crosslinker. IP was done in Tandem with anti-FLAG magnetic beads followed by His purification with Ni-NTA resin under denaturing condition. RNA was released by incubating the bead conjugated RNA-protein complex with Proteinase K at a final concentration of 100µg/ml for 1 h at 56°C. Cells were grown in YPD medium for 7 generations to reach mid-log phase. WT cells and Xrn1 NLS mutant cells were grown for the experiment. Total RNA was purified with standard Phenol: Chloroform extraction Library construction was done using PAS sequencing protocol (Yoon et.al. 2021, Methods in Enzymology)

text: Xrn1 NLS1/2 double mutation

text: In vivo

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: BY4741, MATa his3∆1 leu2∆0 met15∆0, ura3∆, CaUra3∆::xrn1∆NLS1/2-FLAG-6HIS

characteristic: strain

text: DD 1


E-MTAB-12110:DD 2

characteristic: ENA-CHECKLIST

text: Department of Biostatistics, University of Florida

text: public

text: E-MTAB-12110:DD 2

text: ArrayExpress

text: baker's yeast

text: Xrn1 NLS1/2 double mutation

characteristic: genotype

text: In vivo

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

characteristic: organism part

text: Saccharomyces cerevisiae

text: DD 2


E-MTAB-12110:DD 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12110:DD 3

text: ArrayExpress

text: baker's yeast

text: Xrn1 NLS1/2 double mutation

text: In vivo

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: DD 3


E-MTAB-12110:in vitro control DD 1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12110:in vitro control DD 1

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: Xrn1 NLS1/2 double mutation

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: BY4741, MATa his3∆1 leu2∆0 met15∆0, ura3∆, CaUra3∆:: xrn1∆NLS1/2-FLAG

text: in vitro control DD 1


E-MTAB-12110:in vitro control DD 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12110:in vitro control DD 2

text: ArrayExpress

text: baker's yeast

text: Xrn1 NLS1/2 double mutation

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: in vitro control DD 2


E-MTAB-12110:in vitro DD 1

text: public

text: E-MTAB-12110:in vitro DD 1

text: ArrayExpress

text: baker's yeast

characteristic: description

text: Xrn1 NLS1/2 double mutation

text: In vitro

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: in vitro DD 1

characteristic: title


E-MTAB-12110:in vitro DD 2

text: public

text: E-MTAB-12110:in vitro DD 2

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Xrn1 NLS1/2 double mutation

text: In vitro

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: in vitro DD 2


E-MTAB-12110:in vitro control WT 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12110:in vitro control WT 1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

characteristic: genotype

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: BY4741, MATa his3∆1 leu2∆0 met15∆0, ura3∆, CaUra3∆:: Xrn1WT-FLAG

characteristic: strain

text: in vitro control WT 1


E-MTAB-12110:in vitro control WT 2

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12110:in vitro control WT 2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

characteristic: organism part

text: Saccharomyces cerevisiae

text: in vitro control WT 2


E-MTAB-12110:in vitro WT 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12110:in vitro WT 1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: in vitro WT 1


E-MTAB-12110:in vitro WT 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12110:in vitro WT 2

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: in vitro WT 2


E-MTAB-12110:WT 1

characteristic: External Id

text: public

text: E-MTAB-12110:WT 1

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

text: In vivo

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: BY4741, MATa his3∆1 leu2∆0 met15∆0, ura3∆, CaUra3∆::Xrn1WT-FLAG-6HIS

text: WT 1


E-MTAB-12110:WT 2

text: public

text: E-MTAB-12110:WT 2

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: In vivo

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: WT 2

characteristic: title


E-MTAB-12110:WT 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12110:WT 3

text: ArrayExpress

text: baker's yeast

text: wild type genotype

characteristic: genotype

text: In vivo

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

text: WT 3


E-MTAB-12110:in vitro control 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12110:in vitro control 1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

text: Saccharomyces cerevisiae

characteristic: strain

text: in vitro control 1


E-MTAB-12110:in vitro control 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12110:in vitro control 2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: In vitro

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: whole organism

characteristic: organism part

text: Saccharomyces cerevisiae

text: in vitro control 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

tag: Namespace:Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences

unit: day

characteristic: age

text: Muscovy

characteristic: breed

text: ArrayExpress

text: mallard

text: Protocols: Twenty seven 1-day-old healthy Muscovy ducklings were collected and randomly separated into three groups. Nine ducklings were administrated with 500 μL JDm10 strain at a titer of 108.2 median tissue culture infective dose (TCID50) per mL via intramuscular injection; nine ducklings were administrated with 500 μL HN10 strain at a titer of 106.4 median TCID50 per mL; the rest of ducklings were treated with sterile DMEM as a blank control. The bursa of Fabricius specimens were harvested at 72 hours post infection (hpi) and frozen in liquid nitrogen for the consequent experiments. Total RNA of bursa of Fabricius tissues was extracted using RNAiso Plus (Takara Bio Inc., Dalian, China). The RNA amount and purity of each sample was quantified using NanoDrop ND-1000 (NanoDrop, Wilmington, DE, USA). The RNA integrity was assessed by Bioanalyzer 2100 (Agilent, CA, USA) with RIN number >7.0, and confirmed by electrophoresis with denaturing agarose gel. RNA was divided into two parts for at least 2 μg in each. Epicentre Ribo-Zero Gold Kit (Illumina, San Diego, USA) was used to deplete rRNA, and NEB Next Ultra Directional RNA Library Prep Kit for Illumina (New England Biolabs, Ipswich, USA) was used to establish the library of one part for long chain RNA sequencing. TruSeq Small RNA Sample Prep Kit (Illumina) was used to establish the library of the other part for small RNA sequencing.

text: neonatal

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Anas platyrhynchos

text: Anas platyrhynchos

text: bursa of Fabricius

text: Anas platyrhynchos

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences

text: public

characteristic: Submitter Id

text: Muscovy

text: ArrayExpress

characteristic: broker name

text: mallard

characteristic: common name

characteristic: description

text: neonatal

text: normal

text: wild type genotype

text: Anas platyrhynchos

characteristic: organism

text: Anas platyrhynchos

text: bursa of Fabricius

text: Anas platyrhynchos

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Muscovy

text: ArrayExpress

text: mallard

text: neonatal

text: Hemorrhagic necrotizing hepatitis

text: wild type genotype

characteristic: genotype

text: Muscovy duck reovirus HN10

characteristic: infect

text: Anas platyrhynchos

text: Anas platyrhynchos

text: bursa of Fabricius

characteristic: organism part

text: Anas platyrhynchos

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: age

text: Muscovy

characteristic: breed

text: ArrayExpress

text: mallard

text: neonatal

characteristic: developmental stage

text: Hemorrhagic necrotizing hepatitis

characteristic: disease

text: wild type genotype

text: Muscovy duck reovirus JDm10

text: Anas platyrhynchos

text: Anas platyrhynchos

text: bursa of Fabricius

text: Anas platyrhynchos

text: male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

tag: Namespace:Shanghai Tenth people's hosipital, Shanghai, China

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: wild type genotype

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans

characteristic: strain


text: Shanghai Tenth people's hosipital, Shanghai, China

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: adapter library

text: ArrayExpress

text: aneuploid type

text: Candida albicans

characteristic: organism

text: Candida albicans

text: whole organism

text: Candida albicans

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rostock University Medical Center

text: public

characteristic: SRA accession

text: Metagenomics for the diagnosis of malaria

text: blood metagenome

text: blood metagenome


N. benthamiana WT leaf

text: JIC

text: public

text: N. benthamiana WT leaf

text: Approx.4 weeks old seedlings in CER B51 under healthy conditions 3 replicates, each replicate was pooled from 2 independent plants. Position 5 leaf from cotyledon (we generally use this for HR and resistance assay).

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: N. benthamiana WT leaf


text: ETH Zurich, DBSSE

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Brain organoids were harvested on day 19 to perform 10x multiome scRNA- and scATAC-seq. Single cell suspensions were acquired by dissociation of the organoids with a papain-based dissociation (Miltenyi Biotec, 130-092-628). The induced pluripotent stem cell line 409B2 was used for this experiment. The wild type GLI3-mediated cell line with inducible Cas9 nickase were generated through editing process. GLI3 WT cerebral organoids were generated using the protocol by Lancaster 2014 (https://doi.org/10.1038/nprot.2014.158 ), and were treated with or without 200 ng/mL Sonic Hedgehog (SHH, R&D systems, 1845-SH-025/CF) daily starting three days prior to the experiment on day 19. After dissociation, cell viability was checked, cells were counted and 7000 cells were targeted per lane of the 10x microfluidic chip. Combined scRNA-seq and scATAC-seq were generated with the Chromium Single Cell Multiome ATAC + Gene Expression kit.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: inducible Cas9 nickase

characteristic: genotype

text: cerebral organoid culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: dermis

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:ROBERT KOCH-INSTITUTE

characteristic: Submitter Id

text: Robert Koch Institute, Seestr. 10, 13353 Berlin, Germany

characteristic: collecting institution

text: Centre for Biological Threats and Special Pathogens (ZBS1)

characteristic: collector name

text: clinical sample

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

text: Omicron BA.2

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: SARS-CoV-2 BA.2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: clinical sample

text: Germany

text: human

text: diseased

text: Homo sapiens

text: not collected

text: Omicron BA.1

characteristic: organism

text: SARS-CoV-2 BA.1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Unit 17

text: clinical sample

text: Germany

text: human

text: diseased

text: Homo sapiens

text: not collected

text: SARS-CoV-2 D614G


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

characteristic: assembly software

text: default

characteristic: binning parameters

text: CONCOCT

characteristic: binning software

text: food product

characteristic: broad-scale environmental context

characteristic: collection date

text: Saccharomyces cerevisiae MAG obtained from a rice vinegar metagenome

characteristic: description

text: food material

characteristic: environmental medium

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rice vinegar

text: rice wine vinegar

characteristic: local environmental context

text: food fermentation metagenome

characteristic: metagenomic source

text: food fermentation metagenome

characteristic: project name

characteristic: sample derived from

text: food fermentation metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Tinca tinca

characteristic: Host

text: EI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA

characteristic: Source Name

text: Trypanoplasma borreli

characteristic: Species name

characteristic: Submitter Id

text: COPO

characteristic: broker name

characteristic: date isolated

text: Jindrichuv Hradec District

characteristic: location isolated

text: Trypanosoma suis

characteristic: organism

text: Trypanosoma suis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:The Peter Doherty Institute for Infection and Immunity, University of Melbourne

text: ArrayExpress

text: CD4-positive, alpha-beta memory T cell

text: human

characteristic: common name

text: Protocols: We enrolled healthy volunteers and 21 people with HIV (PWH) receiving suppressive antiretroviral therapy (ART) at The Alfred Hospital, Melbourne, Australia (n=11) and University of California San Francisco (UCSF), California, USA (n=10). Participants provided written informed consent before inclusion in the study. As per study protocol inclusion criteria, we enrolled individuals with documented HIV infection aged 18 years or older and receiving combination ART with plasma HIV RNA <50 copies/mL for at least 3 years. We excluded individuals with skin infection at inguinal area; current lower extremity, gastrointestinal or genitourinary infection; chronic venous stasis or lymphedema of lower extremities; blood coagulation disorder or conditions requiring anticoagulant therapy; liver cirrhosis; weight <50 kg or BMI >35; blood pressure >160/100 mmHg or <100/70 mmHg; pregnant or breast feeding; or any with clinically significant cardiac or cerebrovascular disease. Leukapheresis procedures were performed at The Alfred Hospital (n=11) or UCSF (n=10). PD-1+/CTLA4+, PD-1+/CTLA4-, and PD-1-/CTLA4- CD4+ T cells were sorted by flow cytometry into a 10% FCS/PBS buffer. CD4+ T cells were sorted as single-cells using the Chromium 10X Genomics platform. Approximately 10,000 (healthy controls) and 40,000 (HIV patients) CD4+ T cells were loaded per channel onto a Chromium controller (10x Genomics) for generation of gel bead-in-emulsions using 3′ gene expression kits (v3.1; 10x Genomics). Sequencing libraries were prepared using Single Cell 3’ Reagent Kits v3 (10x Genomics) and then converted using the the MGIEasy Universal Library Conversion Kit (BGI).

characteristic: description

text: normal

characteristic: disease

text: mix of PD-1+/CTLA4+, PD-1+/CTLA4- and PD-1-/CTLA4-

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Peter Doherty Institute for Infection and Immunity, University of Melbourne

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: CD4-positive, alpha-beta memory T cell

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: CD4-positive, alpha-beta memory T cell

text: receiving suppressive antiretroviral therapy

characteristic: clinical history

text: human

text: human immunodeficiency virus infectious disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


Magnaporthe oryzae pathotype Triticum

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: John Innes Centre

text: public

text: Magnaporthe oryzae pathotype Triticum

tag: Namespace:John Innes Centre

text: MoT N06047 strain transformed with AvrSr50 from Puccinia graminis f. sp. tritici

text: MoT N06047 PS-2 transformant

characteristic: isolate

text: Pyricularia oryzae

text: Pyricularia oryzae

text: MoT PS-2 transformant

characteristic: title


PS-2 Rep 1

text: John Innes Centre

text: public

text: PS-2 Rep 1

text: MoT N06047 strain PS-2 during infection of wheat variety Gabo

characteristic: description

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-2 Rep 1


PS-2 Rep 2

text: John Innes Centre

text: public

text: PS-2 Rep 2

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-2 Rep 2


PS-2 Rep 3

text: John Innes Centre

text: public

text: PS-2 Rep 3

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-2 Rep 3


PS-7 Rep 1

text: John Innes Centre

text: public

text: PS-7 Rep 1

text: MoT N06047 strain PS-7 during infection of wheat variety Gabo

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-7 Rep 1


PS-7 Rep 2

text: John Innes Centre

text: public

text: PS-7 Rep 2

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-7 Rep 2


PS-7 Rep 3

text: John Innes Centre

text: public

text: PS-7 Rep 3

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-7 Rep 3


PS-22 Rep 1

text: John Innes Centre

text: public

text: PS-22 Rep 1

text: MoT N06047 strain PS-22 during infection of wheat variety Gabo

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-22 Rep 1


PS-22 Rep 2

text: John Innes Centre

text: public

text: PS-22 Rep 2

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-22 Rep 2


PS-22 Rep 3

text: John Innes Centre

text: public

text: PS-22 Rep 3

text: Pyricularia oryzae

text: Pyricularia oryzae

text: PS-22 Rep 3


MoT N06047 Rep 1

text: John Innes Centre

text: public

text: MoT N06047 Rep 1

text: MoT N06047 strain during infection of wheat variety Gabo

text: Pyricularia oryzae

text: Pyricularia oryzae

text: MoT N06047 Rep 1


MoT N06047 Rep 2

text: John Innes Centre

text: public

text: MoT N06047 Rep 2

text: Pyricularia oryzae

text: Pyricularia oryzae

text: MoT N06047 Rep 2


MoT N06047 Rep 3

text: John Innes Centre

text: public

text: MoT N06047 Rep 3

text: Pyricularia oryzae

text: Pyricularia oryzae

text: MoT N06047 Rep 3


LactoStreps

text: CORNELL

text: public

text: LactoStreps

characteristic: collection date

text: Lacto and Strep innoculum

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: LYBHI

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: LactoStreps


Phis

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Phis

characteristic: Submitter Id

text: Phisticola innoculum

text: USA

text: metagenome

text: chopped meat carbohydrate broth

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

text: Phis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 1 day 0

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sucrose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 1 day 11

text: USA

text: metagenome

characteristic: investigation type

text: trehalose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 1 day 13

text: USA

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 1 day 15

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 1 day 17

text: USA

text: metagenome

characteristic: investigation type

text: trehalose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 1 day 18

text: USA

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 1 day 3

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sucrose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 1 day 6

text: USA

text: metagenome

characteristic: investigation type

text: sucrose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 1 day 7

text: USA

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 1 day 9

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 1 day takedown

text: USA

text: metagenome

characteristic: investigation type

text: trehalose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 2 day 0

text: USA

text: metagenome

text: sucrose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 2 day 11

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 2 day 13

text: USA

text: metagenome

characteristic: investigation type

text: trehalose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 2 day 17

text: USA

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 2 day 18

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 2 day 3

text: USA

text: metagenome

characteristic: investigation type

text: sucrose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 2 day 6

text: USA

text: metagenome

text: sucrose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 2 day 7

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 2 day 9

text: USA

text: metagenome

characteristic: investigation type

text: trehalose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 2 day takedown

text: USA

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 3 day 0

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sucrose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: trehalose reactor 3 day 11

text: USA

text: metagenome

characteristic: investigation type

text: trehalose small intestine medium

characteristic: isolation and growth condition

text: artifical environment

characteristic: miscellaneous environmental package

text: DNeasy Blood & Tissue kit

characteristic: nucleic acid extraction

text: synthetic metagenome

text: anaerobic

characteristic: oxygenation status of sample

text: CAMIO

characteristic: project name

text: synthetic metagenome

text: Illumina MiSeq

characteristic: sequencing method


characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: trehalose reactor 3 day 13

text: USA

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

characteristic: organism

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

characteristic: collection date

text: trehalose reactor 3 day 15

characteristic: description

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: trehalose small intestine medium

text: artifical environment

text: DNeasy Blood & Tissue kit

text: synthetic metagenome

text: anaerobic

text: CAMIO

text: synthetic metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CORNELL

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