text: 0 ppm

text: 72 h

characteristic: Exposure time

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


status: PUBLIC

tag: attribute

characteristic: Compound

text: 0 ppm

characteristic: Concentration

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: 72 h

characteristic: External Id

characteristic: Gender

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Fraunhofer Institute for Toxicology and Experimental Medicine ITEM

characteristic: Submitter Id

text: Single dose; repeated dose

characteristic: Treatment

text: complex (has to be extracted from test method description)

characteristic: Treatment scheme

text: EU-ToxRisk DCC

characteristic: broker name

text: PBEC

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: 50 ppm

text: 24 h

characteristic: Exposure time

text: Fraunhofer Institute for Toxicology and Experimental Medicine ITEM

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: Compound

text: 0 ppm

text: 24 h

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 50 ppm

characteristic: Concentration

text: 72 h

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 4000 ppm

characteristic: ENA first public

text: 24 h

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 4000 ppm

characteristic: ENA-CHECKLIST

text: 72 h

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 1000 ppm

text: 24 h

characteristic: External Id

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 1000 ppm

text: 72 h

characteristic: Gender

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 3500 ppm

text: 24 h

characteristic: INSDC center name

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 3500 ppm

text: 72 h

characteristic: INSDC last update

text: public

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 2500 ppm

text: 24 h

text: public

characteristic: INSDC status

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 2500 ppm

text: 72 h

text: public

characteristic: SRA accession

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: 200 ppm

text: 24 h

text: public

characteristic: Submitter Id

text: Single dose; repeated dose

text: EU-ToxRisk DCC

text: PBEC

text: human

text: Homo sapiens

text: Homo sapiens


text: CENTRE FOR ECOLOGY AND HYDROLOGY

text: public

tag: Namespace:CENTRE FOR ECOLOGY AND HYDROLOGY

characteristic: collection date

characteristic: description

text: municipal wastewater treatment plant

characteristic: environment (biome)

characteristic: environment (feature)

text: liquid environmental material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: project name

text: wastewater metagenome

text: Novoseq

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CENTRE FOR ECOLOGY AND HYDROLOGY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: municipal wastewater treatment plant

text: liquid environmental

text: United Kingdom

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: Novoseq

text: wastewater/sludge


text: CENTRE FOR ECOLOGY AND HYDROLOGY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: RAS

characteristic: description

text: municipal wastewater treatment plant

characteristic: environment (biome)

text: liquid environmental

text: United Kingdom

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Novoseq

text: wastewater/sludge


text: CENTRE FOR ECOLOGY AND HYDROLOGY

text: public

text: municipal wastewater treatment plant

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: wastewater metagenome

text: Novoseq

text: wastewater/sludge


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY HOHENHEIM

text: public

tag: Namespace:UNIVERSITY HOHENHEIM

text: Tot. mix. ratio. 80% sainfoin-rich silage, 20% concentrate with Acacia mearnsii extract. CP 17%

text: bovine gut metagenome

text: bovine gut metagenome

text: Rumen juice

characteristic: title


characteristic: External Id

text: CSIRO

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: river water with antibiotics

text: river

text: freshwater

text: United Kingdom

unit: m

characteristic: geographic location (depth)

text: metagenome

text: metagenome

text: River Irwell metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


text: CSIRO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: river

text: freshwater

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: River Irwell metagenome

text: metagenome

text: Illumina MiSeq

text: water


text: University of Goettingen

text: public

tag: Namespace:University of Goettingen

text: DNA samples from herbarium voucher B 10 0652979

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not applicable

characteristic: isolation and growth condition

text: Leucanthemopsis pallida subsp. virescens

text: not applicable

characteristic: plant developmental stage

text: not applicable

characteristic: plant growth medium

text: leaf

characteristic: plant structure


characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Goettingen

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: DNA samples from herbarium voucher B 10 0652972

text: Spain

text: not applicable

text: not applicable

text: not applicable

text: leaf


text: University of Goettingen

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DNA samples from herbarium voucher SALA158944

text: Spain

text: not applicable

text: not applicable

text: not applicable

text: leaf


text: University of Goettingen

text: public

characteristic: collection date

text: DNA samples from herbarium voucher SALA158943

text: Spain

text: not applicable

characteristic: organism

text: not applicable

text: not applicable

text: leaf


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

characteristic: INSDC first public

text: public

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: IHU - Mediterranee Infection

text: public

tag: Namespace:IHU - Mediterranee Infection

text: Enterococcus mundtii was isolated from stool

text: stool

text: Enterococcus mundtii

text: Enterococcus mundtii

characteristic: strain

text: Enterococcus mundtii genomes


text: MNHN

text: public

text: human

text: Petrous bone from immature individual

text: Homo sapiens

text: Homo sapiens

text: Ulug-depe Sample 75


text: EBD-CSIC

text: public

text: Eurasian lynx

text: Lynx lynx

text: Lynx lynx


text: MEDIZNISCHE HOCHSCHULE HANNOER

text: public

text: human metagenome

text: human metagenome


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

tag: Namespace:NATIONAL VETERINARY INSTITUTE (SVA)

text: Sweden

characteristic: geographic location (country and/or sea)

text: Norrköping

characteristic: geographic location (region and locality)

text: Fresh water

text: Campylobacter coli

text: Campylobacter coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Sweden

text: Stockholm

text: Fresh water

text: Campylobacter coli

text: Campylobacter coli


text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Portugal

text: Gallus gallus

characteristic: host scientific name

text: Skin

text: Campylobacter coli

text: Campylobacter coli


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Spain

text: Gallus gallus

text: Skin

text: Campylobacter coli

text: Campylobacter coli


characteristic: ENA-FIRST-PUBLIC

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Netherlands

text: Fresh water

text: Campylobacter coli

characteristic: organism

text: Campylobacter coli


characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC first public

text: public

text: Sweden

text: Trollhättan

text: Fresh water

text: Campylobacter lari

text: Campylobacter lari


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Sweden

text: Borås

text: Fresh water

text: Campylobacter lari

text: Campylobacter lari


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Sweden

text: Sus scrofa

text: Faeces

text: Campylobacter lanienae

text: Campylobacter lanienae


text: Universite Grenoble Alpes

text: public

tag: Namespace:Universite Grenoble Alpes

text: Asian tiger mosquito

characteristic: common name

text: Aedes albopictus

text: Aedes albopictus

text: Cambodia, Battambong


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: South Korea, Chuncheon

characteristic: title


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Chengdu


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Thailand, Chumporn


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: South Korea, Daejeon


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Foshan


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Guilin


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Hangzhou


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Japan, Inarizuka Park, Tokyo


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Huayxai


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: South Korea, Jeonju


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Kaifeng


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Cambodia, Kampong Thom


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Luang Namtha


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Mahaxay


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Meizhou


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Japan, Hakusan Park, Niigata


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Malaysia, Kuantan, Pahang


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Malaysia, Sungai Dua, Penang


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Cambodia, Phnom Penh


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Phonsavanh Neua


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Paksan


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Pakse


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Cambodia, Preah Vihear


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Cambodia, Pursat


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Malaysia, Taman Alam Budiman, Selangor


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Shanghai


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Shangtou


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Cambodia, Sihanouk Ville


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Thailand, Songkhla


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Japan, Sueyoshi Park, Okinawa


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Tianjin


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Viangkeo


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: South Korea, Wonju


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Wuhu


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: Laos, Xayaboury


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Xiangyang


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Xi'an


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: South Korea, Yeoncheon


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: South Korea, Yangsan


text: Universite Grenoble Alpes

text: public

text: Asian tiger mosquito

text: Aedes albopictus

text: Aedes albopictus

text: China, Yunfu


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

characteristic: broker name

text: Unpaired U1 reads

characteristic: description

text: Thermus thermophilus HB27

text: Thermus thermophilus HB27

text: Unpaired U1 reads


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Unpaired U2 reads

text: Thermus thermophilus HB27

text: Thermus thermophilus HB27

text: Unpaired U2 reads


text: GENGS-CBMSO

text: public

text: GENGS-CBMSO

text: Paired reads

text: Thermus thermophilus HB27

text: Thermus thermophilus HB27

text: Paired reads


text: pig

text: Spain

characteristic: geographic location (country and/or sea)

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

characteristic: scientific name

text: Male

characteristic: sex

Animal Breeding and Genetics Group

Address: Av Rovira Roure 191, 25198 Lleida

Roger Ros-Freixedes

FirstName: Roger

LastName: Ros-Freixedes


text: pig

text: Duroc pig sample 1

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 4

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 8

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 12

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 14

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 19

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 21

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 48

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 115

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1032

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1034

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1038

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1066

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1128

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1150

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1258

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1273

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1277

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1279

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1284

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1286

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1289

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1296

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1300

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1341

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1384

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1434

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1964

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1966

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1970

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1971

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1972

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1976

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1977

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1979

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1981

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1984

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1988

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1991

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 1994

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2000

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2001

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2004

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2008

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2013

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2015

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2017

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2020

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2026

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2029

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2039

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2043

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2048

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2052

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2053

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2055

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2057

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2065

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


text: pig

text: Duroc pig sample 2068

text: Spain

text: Sus scrofa

text: Sus scrofa

text: Sus scrofa

text: Male


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Liverpool School Of Tropical Medicine

characteristic: INSDC center name

text: public

tag: Namespace:Liverpool School Of Tropical Medicine

text: Whole-transcriptome analysis of insecticide-resistant mosquitoes

text: Anopheles coluzzii

text: Anopheles coluzzii


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK

unit: year

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: Protocols: Human IEO were generated from mucosal biopsies by isolation of intestinal crypts and culturing in Matrigel® (Corning) In vitro differentiation of human IEO was performed by culturing IEO in standard growth medium for four days followed by removal of wnt agonists (using a modified differentiation medium) At the end of each experiment, human IEO were harvested and both DNA and RNA were extracted using the AllPrep DNA/RNA mini kit (Qiagen, Hilden, Germany). RNA was prepared with the Truseq mRNA library preparation (Illumina, San Diego, CA, USA)

text: paediatric

characteristic: developmental stage

text: differentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: sigmoid colon

characteristic: organism part

characteristic: passage

text: low

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: differentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: terminal ileum

text: low

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: Protocols: Human IEO were generated from mucosal biopsies by isolation of intestinal crypts and culturing in Matrigel® (Corning) At the end of each experiment, human IEO were harvested and both DNA and RNA were extracted using the AllPrep DNA/RNA mini kit (Qiagen, Hilden, Germany). RNA was prepared with the Truseq mRNA library preparation (Illumina, San Diego, CA, USA)

text: paediatric

characteristic: developmental stage

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: sigmoid colon

text: low

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

text: undifferentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: low

text: Homo sapiens

text: male


characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: differentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: sigmoid colon

text: low

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: differentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

text: low

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: Protocols: Human IEO were generated from mucosal biopsies by isolation of intestinal crypts and culturing in Matrigel® (Corning) IEO were cultured for 5 days after splitting in the growth medium, followed by 24 h treatment with recombinant human protein TNFα (H8916, Sigma Aldrich) at 40 ng/ml or IFNγ (PHC4031, Life Technologies) at 20 ng/ml. At the end of each experiment, human IEO were harvested and both DNA and RNA were extracted using the AllPrep DNA/RNA mini kit (Qiagen, Hilden, Germany). RNA was prepared with the Truseq mRNA library preparation (Illumina, San Diego, CA, USA)

text: paediatric

text: undifferentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: low

text: Homo sapiens

text: male

text: interferon gamma; 20 nanogram per milliliter

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: terminal ileum

text: low

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

text: low

text: Homo sapiens

text: male

characteristic: sex

text: tumor necrosis factor alpha; 40 nanogram per milliliter


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

text: undifferentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: low

text: Homo sapiens

text: female

characteristic: stimulus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: sigmoid colon

text: low

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

text: low

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

text: differentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: high

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: terminal ileum

text: high

text: Homo sapiens

text: male

characteristic: stimulus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

text: high

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

text: undifferentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: high

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: terminal ileum

text: high

text: Homo sapiens

text: female

characteristic: stimulus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

text: high

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

text: undifferentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: high

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: differentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: sigmoid colon

text: high

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: differentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: sigmoid colon

text: high

text: Homo sapiens

text: male

characteristic: sex


characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

text: differentiated

characteristic: differentiation

text: normal

characteristic: disease

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: terminal ileum

characteristic: organism part

characteristic: passage

text: high

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: organoid

text: intestinal epithelial cell

text: human

characteristic: common name

characteristic: description

text: paediatric

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: sigmoid colon

text: high

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: organoid

text: intestinal epithelial cell

text: human

text: paediatric

characteristic: developmental stage

text: undifferentiated

text: normal

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: sigmoid colon

text: high

text: Homo sapiens

text: male

characteristic: sex


characteristic: External Id

text: University of Colonge

text: public

characteristic: SRA accession

tag: Namespace:University of Colonge

text: liverwort

text: lab grown Tak-1 wild type

text: 14 day old gametophyte

characteristic: ecotype

text: extraction of total RNA with trizol reagent

text: Marchantia polymorpha

text: Marchantia polymorpha

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Colonge

text: public

characteristic: Submitter Id

text: liverwort

text: lab grown Mpspirrig mutant indentified in mutant screen

text: 14 day old gametophyte

text: Marchantia polymorpha

text: Marchantia polymorpha

text: male


text: University of Greifswald

text: public

tag: Namespace:University of Greifswald

text: University of Greifswald

characteristic: collection date

text: seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 μm - and 3 μm - pore-size polycarbonate filters, frozen at -80°C. This sample refers to the 3 - 10 μm fraction

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: microbial feature [ENVO:00002150]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: North Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured marine microorganism

text: Particle-attached bacterioplankton composition of surface seawater during the spring bloom at Helgoland in the year 2018

characteristic: project name

text: uncultured marine microorganism

text: Illumina HiSeq 2500

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Greifswald

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: University of Greifswald

text: seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 μm pore-size polycarbonate filters, frozen at -80°C. This sample refers to the larger than 10 μm fraction

text: marine biome [ENVO:00000447]

text: microbial feature [ENVO:00002150]

text: coastal sea water [ENVO:00002150]

text: North Sea

text: mimarks-survey

text: uncultured marine microorganism

characteristic: organism

text: uncultured marine microorganism

text: Illumina HiSeq 2500

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: FISABIO - Public Health

text: public

tag: Namespace:FISABIO - Public Health

characteristic: Submitter Id

text: faecal sample from obese patient

characteristic: description

text: Homo sapiens

characteristic: host scientific name

text: human gut metagenome

text: human gut metagenome


text: public

tag: Namespace:Institute of Evolutionary Biology, University of Edinburgh

text: fruit fly

characteristic: common name

text: European D. melagnoaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: female

characteristic: sex


text: Institute of Evolutionary Biology, University of Edinburgh

text: public

text: fruit fly

text: European D. melagnoaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male


text: public

text: fruit fly

text: European D. melagnoaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: female


text: public

text: fruit fly

text: West African D. melagnoaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: female


text: public

text: fruit fly

text: West African D. melagnoaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male


text: public

text: European D. simulans

text: Drosophila simulans

text: Drosophila simulans

text: female


text: public

text: European D. simulans

text: Drosophila simulans

text: Drosophila simulans

text: male


E-MTAB-11564:Sample 1

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 1

tag: Namespace:MRC LABORATORY OF MOLECULAR BIOLOGY

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Day55 brain organoids from hES H9 cell line were snap frozen and processed for single nuclei isolation. Single nuclei isolation protocol was adapted from “Frankestein protocol” (Hu et al., 2017; Habib et al., 2016; Habib et al., 2017; Lake et al., 2016) and Denisenko et al., 2020. Tissue homogenate was FACS sorted to enrich for DAPI positive nuclei. Nuclei were further processed according to 10X manufacturing instructions\. Control (CTRL) organoids were generated according to the commercial kit (STEMdiff™ Cerebral Organoid Kit, StemCell Technologies 08570). Nucleic acid fragments were isolated and size-selected using Dynabead-based magnetic purification following 10x genomics library preparation protocol according to manufacturer's instructions. Single-nuclear RNA-seq libraries were generated using the 10X Genomics Chromium system (version 3 chemistry).

text: brain organoid

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: embryonic stem cell

characteristic: progenitor cell type

text: control

characteristic: protocol

text: biological replicate 6

characteristic: replicate

text: Homo sapiens

text: female

unit: day

characteristic: time

text: Sample 1


E-MTAB-11564:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MRC LABORATORY OF MOLECULAR BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11564:Sample 2

text: ArrayExpress

text: human

text: Protocols: Day55 brain organoids from hES H9 cell line were snap frozen and processed for single nuclei isolation. Single nuclei isolation protocol was adapted from “Frankestein protocol” (Hu et al., 2017; Habib et al., 2016; Habib et al., 2017; Lake et al., 2016) and Denisenko et al., 2020. Tissue homogenate was FACS sorted to enrich for DAPI positive nuclei. Nuclei were further processed according to 10X manufacturing instructions\. Fast shaking (FAST) organoids were generated according to CTRL condition but kept on orbital shaker at 78 rpm. Nucleic acid fragments were isolated and size-selected using Dynabead-based magnetic purification following 10x genomics library preparation protocol according to manufacturer's instructions. Single-nuclear RNA-seq libraries were generated using the 10X Genomics Chromium system (version 3 chemistry).

text: brain organoid

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: fast shaking

text: biological replicate 6

text: Homo sapiens

text: female

text: Sample 2


E-MTAB-11564:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Day55 brain organoids from hES H9 cell line were snap frozen and processed for single nuclei isolation. Single nuclei isolation protocol was adapted from “Frankestein protocol” (Hu et al., 2017; Habib et al., 2016; Habib et al., 2017; Lake et al., 2016) and Denisenko et al., 2020. Tissue homogenate was FACS sorted to enrich for DAPI positive nuclei. Nuclei were further processed according to 10X manufacturing instructions\. Dissociated (DISS) organoids were dissociated to single cell suspension at day45 and reaggregated. Nucleic acid fragments were isolated and size-selected using Dynabead-based magnetic purification following 10x genomics library preparation protocol according to manufacturer's instructions. Single-nuclear RNA-seq libraries were generated using the 10X Genomics Chromium system (version 3 chemistry).

characteristic: description

text: brain organoid

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: dissociated and re-aggregated

text: biological replicate 8

text: Homo sapiens

text: female

text: Sample 3

characteristic: title


E-MTAB-11564:Sample 4

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 4

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: brain organoid

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: embryonic stem cell

characteristic: progenitor cell type

text: control

text: biological replicate 8

text: Homo sapiens

text: female

characteristic: sex

text: Sample 4


E-MTAB-11564:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MRC LABORATORY OF MOLECULAR BIOLOGY

characteristic: INSDC center name

text: public

text: E-MTAB-11564:Sample 5

text: ArrayExpress

text: human

text: brain organoid

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: control

characteristic: protocol

text: biological replicate 7

characteristic: replicate

text: Homo sapiens

text: female

characteristic: time

text: Sample 5


E-MTAB-11564:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: MRC LABORATORY OF MOLECULAR BIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11564:Sample 6

text: ArrayExpress

text: human

text: Protocols: Day55 brain organoids from hES H9 cell line were snap frozen and processed for single nuclei isolation. Single nuclei isolation protocol was adapted from “Frankestein protocol” (Hu et al., 2017; Habib et al., 2016; Habib et al., 2017; Lake et al., 2016) and Denisenko et al., 2020. Tissue homogenate was FACS sorted to enrich for DAPI positive nuclei. Nuclei were further processed according to 10X manufacturing instructions\. No Matrigel (noMG) organoids were devoid of Matrigel exposure. Nucleic acid fragments were isolated and size-selected using Dynabead-based magnetic purification following 10x genomics library preparation protocol according to manufacturer's instructions. Single-nuclear RNA-seq libraries were generated using the 10X Genomics Chromium system (version 3 chemistry).

text: brain organoid

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: no matrigel

text: biological replicate 8

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-11564:Sample 7

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: brain organoid

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: fast shaking

text: biological replicate 7

text: Homo sapiens

text: female

text: Sample 7

characteristic: title


E-MTAB-11564:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 8

text: ArrayExpress

text: human

text: brain organoid

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: embryonic stem cell

characteristic: progenitor cell type

text: dissociated and re-aggregated

text: biological replicate 7

text: Homo sapiens

text: female

characteristic: sex

text: Sample 8


E-MTAB-11564:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: MRC LABORATORY OF MOLECULAR BIOLOGY

characteristic: INSDC center name

text: public

text: E-MTAB-11564:Sample 9

text: ArrayExpress

text: human

text: brain organoid

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: dissociated and re-aggregated

characteristic: protocol

text: biological replicate 6

characteristic: replicate

text: Homo sapiens

text: female

characteristic: time

text: Sample 9


E-MTAB-11564:Sample 10

text: MRC LABORATORY OF MOLECULAR BIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11564:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: brain organoid

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: no matrigel

text: biological replicate 6

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-11564:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 11

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: brain organoid

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: embryonic stem cell

text: no matrigel

text: biological replicate 8

text: Homo sapiens

text: female

text: Sample 11

characteristic: title


E-MTAB-11564:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: MRC LABORATORY OF MOLECULAR BIOLOGY

text: public

text: E-MTAB-11564:Sample 12

text: ArrayExpress

text: human

text: brain organoid

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: blastocyst

characteristic: organism part

text: embryonic stem cell

characteristic: progenitor cell type

text: fast shaking

text: biological replicate 8

text: Homo sapiens

text: female

characteristic: sex

text: Sample 12


text: University of Trento

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:University of Trento

characteristic: collettion date

text: LF

text: France

characteristic: geographic location

text: metagenome

characteristic: investigation type

text: not collected

characteristic: latitude

text: not collected

characteristic: longitude

text: mouse gut metagenome

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Trento

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: HF

characteristic: description

text: France

text: metagenome

text: not collected

text: not collected

text: mouse gut metagenome

characteristic: organism

text: mouse gut metagenome

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CENTRE FOR ECOLOGY AND HYDROLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: metagenome

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: mimarks-survey

text: metagenome

text: Impact of climate on soil exoenzymes and their role in forecasting carbon flux

text: metagenome

text: Illumina MiSeq

text: soil

characteristic: soil environmental package

text: metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: FONDAZIONE EDMUND MACH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:FONDAZIONE EDMUND MACH

characteristic: Submitter Id

text: cabbage

text: Microbial characterization of organic artisanal sauerkraut fermentation

characteristic: description

text: Brassica oleracea var. capitata

characteristic: organism

text: Brassica oleracea var. capitata

text: Sauerkraut SK1


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: FONDAZIONE EDMUND MACH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: cabbage

characteristic: common name

text: Brassica oleracea var. capitata

text: Brassica oleracea var. capitata

text: Sauerkraut SK2

characteristic: title


text: public

text: ena-SAMPLE-TAB-08-04-2022-07:44:34:754-1269

tag: Namespace:Department of Biosciences and Bioengineering

text: Mayur Mahindra Kedare

text: Compost metagenome of cattle manure and soil

text: India

characteristic: geographic location (country and/or sea)

text: Sila Grant Kating Pahar Siva Temple, near GNRC, IIT Guwahati, Assam

characteristic: geographic location (region and locality)

text: compost metagenome

text: compost metagenome


text: UNIVERSITE DE LIMOGES

text: public

tag: Namespace:UNIVERSITE DE LIMOGES

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 6

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 1 SRBC immunized

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 2 SRBC immunized

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in MAR KO 3 SRBC immunized

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 6

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 7

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 8

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 9

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 10

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 11

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNG KO 12

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMAR KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMAR KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMAR KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMAR KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMAR KO 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMAR KO 6

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSH KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSH KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSH KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSHMAR KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSHMAR KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSHMAR KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSHMAR KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in UNGMSHMAR KO 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 6

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 7

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 8

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 1 SRBC immunized

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 2 SRBC immunized

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within JH4 intron in WT 3 SRBC immunized

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 6

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in MAR KO 7

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 6

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNG KO 7

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMAR KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMAR KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMAR KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMAR KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSH KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSH KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSH KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSHMAR KO 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSHMAR KO 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSHMAR KO 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in UNGMSHMAR KO 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in WT 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in WT 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in WT 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in WT 4

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in WT 5

text: Mus musculus

text: Mus musculus


text: UNIVERSITE DE LIMOGES

text: public

text: house mouse

text: Mutation analysis within Smu region in WT 62

text: Mus musculus

text: Mus musculus


E-MTAB-11622:Sample 1

text: public

text: E-MTAB-11622:Sample 1

tag: Namespace:Institut Necker Enfants Malades (INEM), INSERM U1151/CNRS UMS 8253, Universite de Paris, Paris, France.

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD21high IgG+ memory B cell

text: human

text: Protocols: All spleen in this study were collected from organ donors who died from stroke or head trauma. None of them had lymphoma or autoimmune disease. Immediately after splenectomy, mononuclear cells were isolated from crushed pieces of splenic tissue by ficoll density-gradient centrifugation and stored in liquid nitrogen. After thawing, mononuclear cells were counted and stained with antibodies directed against surface markers. CD21hiCD20hi (CD21high IgG+ memory B cell) and CD21intCD20int memory B cell subsets (CD21int IgG+ memory B cell) were then bulk FACS-sorted (AriaIII) from gated IgG+ switched memory B cells (IgG+CD27+CD20+IgD-) in parallel with naives B cells (CD20+CD38lowCD24intCD27-IgD+CD3-CD14-CD16+). RNA was extracted from remaining cells using a RNeasy Plus Microkit (Qiagen) and sent for library preparation and sequencing by Integragen (Evry, France). Library preparation was performed by Integragen (Evry, France) using the NEBNext Ultra II Directional RNA kit. Briefly the key stages of this protocol are successively, the purification of PolyA containing mRNA molecules using poly-T oligo attached magnetic beads from 1μg total RNA (with the Magnetic mRNA Isolation Kit from NEB), a fragmentation using divalent cations under elevated temperature to obtain approximately 300bp pieces, double strand cDNA synthesis and finally Illumina adapters ligation and cDNA library amplification by PCR for sequencing.

text: adult

characteristic: developmental stage

text: organ donor

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: spleen

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-11622:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Institut Necker Enfants Malades (INEM), INSERM U1151/CNRS UMS 8253, Universite de Paris, Paris, France.

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11622:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: CD21high IgG+ memory B cell

text: human

characteristic: description

text: adult

text: organ donor

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-11622:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11622:Sample 11

text: ArrayExpress

text: CD21int IgG+ memory B cell

text: human

characteristic: common name

text: adult

text: organ donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 11

characteristic: title


E-MTAB-11622:Sample 12

text: public

text: E-MTAB-11622:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: naive B cell

text: human

text: adult

characteristic: developmental stage

text: organ donor

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 12


E-MTAB-11622:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-11622:Sample 2

text: ArrayExpress

text: CD21int IgG+ memory B cell

text: human

text: adult

text: organ donor

text: Homo sapiens

text: Homo sapiens

text: spleen

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 2


E-MTAB-11622:Sample 3

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11622:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: naive B cell

text: human

characteristic: description

text: adult

text: organ donor

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-11622:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11622:Sample 4

text: ArrayExpress

text: CD21high IgG+ memory B cell

text: human

characteristic: common name

text: adult

text: organ donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-11622:Sample 5

text: public

text: E-MTAB-11622:Sample 5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD21int IgG+ memory B cell

text: human

text: adult

characteristic: developmental stage

text: organ donor

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 5

characteristic: title


E-MTAB-11622:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-11622:Sample 6

text: ArrayExpress

text: naive B cell

text: human

text: adult

text: organ donor

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: spleen

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-11622:Sample 7

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11622:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: CD21high IgG+ memory B cell

text: human

text: adult

text: organ donor

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: male

characteristic: sex

text: Sample 7


E-MTAB-11622:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11622:Sample 8

text: ArrayExpress

text: CD21int IgG+ memory B cell

text: human

characteristic: common name

characteristic: description

text: adult

text: organ donor

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: male

text: Sample 8


E-MTAB-11622:Sample 9

text: public

text: E-MTAB-11622:Sample 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: naive B cell

text: human

text: adult

characteristic: developmental stage

text: organ donor

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: spleen

text: Homo sapiens

text: male

text: Sample 9


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: collection date

text: A 1 L seawater sample collected using a Remote Access Sampler, subsequently fixed in mercuric chloride and filter and later filtered onto a 0.2 µm polycarbonate membrane filter

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: FRAM_RAS_EGC_09_1617_1 seawater sample

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

text: metagenome

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_RAS_EGC_12_1617_1 seawater sample

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: collection date

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_RAS_EGC_03_1617_2 seawater sample

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: FRAM_RAS_EGC_07_1617_1 seawater sample

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

text: metagenome

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_RAS_EGC_08_1617_1 seawater sample

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: collection date

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_RAS_EGC_10_1617_2 seawater sample

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: FRAM_RAS_EGC_11_1617 seawater sample

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

text: metagenome

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_RAS_EGC_02_1617_1 seawater sample

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: collection date

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: marine metagenome

text: marine metagenome

text: Pacific Biosciences Sequel II

text: FRAM_RAS_EGC_05_1617_2 seawater sample

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

text: Vamb was run in three different modes with the following parameters: set1 -l 32 -n 512 512, set2 -l 24 -n 384 384 and set3 -l 40 -n 768 768

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624911,ERR9575725

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: uncultured SAR86 cluster bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured SAR86 cluster bacterium

text: PacBio Sequel II

characteristic: sequencing method

text: 16S gene and multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin0

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flye v2.8.3

text: Vamb v3.0.2

characteristic: collection date

text: CheckM v1.0.13

text: This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624913,ERR9575723

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: sea water

text: marine metagenome

text: uncultured Pseudomonadales bacterium

characteristic: organism

text: uncultured Pseudomonadales bacterium

text: PacBio Sequel II

text: 16S gene and multi-marker approach

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin1


characteristic: ENA-CHECKLIST

text: public

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

characteristic: project name

characteristic: sample derived from

text: PacBio Sequel II

characteristic: sequencing method

text: 16S gene and multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flye v2.8.3

text: Vamb v3.0.2

characteristic: collection date

text: CheckM v1.0.13

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: sea water

text: marine metagenome

text: uncultured Pseudomonadales bacterium

characteristic: organism

text: uncultured Pseudomonadales bacterium

text: PacBio Sequel II

text: 16S gene and multi-marker approach

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin11


characteristic: ENA-CHECKLIST

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624917,ERR9575719

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacterium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacterium sp.

text: PacBio Sequel II

characteristic: sequencing method

text: Multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin12

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flye v2.8.3

text: Vamb v3.0.2

characteristic: collection date

text: CheckM v1.0.13

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: sea water

text: marine metagenome

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

text: PacBio Sequel II

text: Multi-marker approach

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin13


characteristic: ENA-CHECKLIST

text: public

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Marinimicrobia bacterium

characteristic: project name

characteristic: sample derived from

text: PacBio Sequel II

characteristic: sequencing method

text: Multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin14

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flye v2.8.3

text: Vamb v3.0.2

characteristic: collection date

text: CheckM v1.0.13

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: sea water

text: marine metagenome

text: uncultured SUP05 cluster bacterium

characteristic: organism

text: uncultured SUP05 cluster bacterium

text: PacBio Sequel II

text: 16S gene and multi-marker approach

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin15


characteristic: ENA-CHECKLIST

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

text: Vamb was run in three different modes with the following parameters: set1 -l 32 -n 512 512, set2 -l 24 -n 384 384 and set3 -l 40 -n 768 768

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Thiotrichaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Thiotrichaceae bacterium

text: PacBio Sequel II

characteristic: sequencing method

text: 16S gene and multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin16

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flye v2.8.3

text: Vamb v3.0.2

characteristic: collection date

text: CheckM v1.0.13

text: This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624916,ERR9575720

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: sea water

text: marine metagenome

text: uncultured SUP05 cluster bacterium

characteristic: organism

text: uncultured SUP05 cluster bacterium

text: PacBio Sequel II

text: 16S gene and multi-marker approach

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin17


characteristic: ENA-CHECKLIST

text: public

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624913,ERR9575723

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacteriaceae bacterium

text: PacBio Sequel II

characteristic: sequencing method

text: Multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin18

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Flye v2.8.3

text: Vamb v3.0.2

characteristic: collection date

text: CheckM v1.0.13

text: This sample represents a manually-refined metagenome-assembled genome recovered from a PacBio HiFi read metagenome of a water column sample in the Fram Strait. The metagenome sample and related assembly can be found under ERS11624915,ERR9575721

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome

text: sea water

text: marine metagenome

text: uncultured Planktomarina sp.

characteristic: organism

text: uncultured Planktomarina sp.

text: PacBio Sequel II

text: 16S gene and multi-marker approach

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin19


characteristic: ENA-CHECKLIST

text: public

characteristic: assembly quality

text: Flye v2.8.3

characteristic: assembly software

characteristic: binning parameters

text: Vamb v3.0.2

characteristic: binning software

characteristic: completeness score

text: CheckM v1.0.13

characteristic: completeness software

characteristic: contamination score

text: marine biome [ENVO:00000447]

text: marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: Arctic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sea water

text: marine metagenome

characteristic: metagenomic source

text: Longimicrobiales bacterium

characteristic: project name

characteristic: sample derived from

text: Longimicrobiales bacterium

text: PacBio Sequel II

characteristic: sequencing method

text: 16S gene and multi-marker approach

characteristic: taxonomic identity marker

text: Fram Strait water column MAG - FRAM_RAS_EGC1617_bin2

characteristic: title