characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: Stutzerimonas stutzeri

characteristic: organism

text: Stutzerimonas stutzeri

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas stutzeri

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255036_bin.7_metawrap_v1.3.0_MAG

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255037 of study SRP351203.

text: rhizosphere

text: Netherlands

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Sphingobacteriales bacterium

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingobacteriales bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Sphingobacteriia;o__Sphingobacteriales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255037_bin.15_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Bacteroidetes bacterium

characteristic: organism

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255037_bin.6_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255039 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Massilia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Massilia sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;g__Massilia;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255039_bin.17_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Pseudoxanthomonas sp.

characteristic: organism

text: uncultured Pseudoxanthomonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255039_bin.18_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Haloferula sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Haloferula sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Haloferula;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255039_bin.5_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255041 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Haloferula sp.

characteristic: organism

text: uncultured Haloferula sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255041_bin.5_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Pseudomonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255041_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255042 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Brevundimonas sp.

characteristic: organism

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

text: uncultured Brevundimonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255042_bin.9_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255044 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Sphingopyxis sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingopyxis sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255044_bin.4_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255047 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Xanthomonadales bacterium

characteristic: organism

text: uncultured Xanthomonadales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255047_bin.10_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Sphingomonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingomonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255047_bin.4_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255048 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Brevundimonas sp.

characteristic: organism

text: uncultured Brevundimonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255048_bin.6_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255049 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Sphingobium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingobium sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255049_bin.5_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255053 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Pseudoxanthomonas sp.

characteristic: organism

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

text: uncultured Pseudoxanthomonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255053_bin.7_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255055 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: Stutzerimonas stutzeri

characteristic: project name

characteristic: sample derived from

text: Stutzerimonas stutzeri

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas stutzeri

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255055_bin.2_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255057 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Shinella sp.

characteristic: organism

text: uncultured Shinella sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255057_bin.14_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Brevundimonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Brevundimonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255057_bin.15_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Chitinophagales bacterium

characteristic: organism

text: uncultured Chitinophagales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255057_bin.3_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Taibaiella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Taibaiella sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Taibaiella;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255057_bin.9_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255059 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Cellvibrio sp.

characteristic: organism

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

text: uncultured Cellvibrio sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cellvibrionales;f__Cellvibrionaceae;g__Cellvibrio;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255059_bin.1_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255060 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255060_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255062 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Sphingomonas sp.

characteristic: organism

text: uncultured Sphingomonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255062_bin.8_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255065 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Sphingomonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingomonas sp.

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255065_bin.13_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255066 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Pseudoxanthomonas sp.

characteristic: organism

text: uncultured Pseudoxanthomonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255066_bin.10_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Terrimonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Terrimonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Terrimonas;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255066_bin.6_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255067 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Chitinophagaceae bacterium

characteristic: organism

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

text: uncultured Chitinophagaceae bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255067_bin.2_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255070 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Haloferula sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Haloferula sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Haloferula;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255070_bin.2_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255074 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Xanthomonadales bacterium

characteristic: organism

text: uncultured Xanthomonadales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255074_bin.9_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255076 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured actinobacterium

characteristic: project name

characteristic: sample derived from

text: uncultured actinobacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255076_bin.12_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Sphingobacteriaceae bacterium

characteristic: organism

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255076_bin.2_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Candidatus Saccharibacteria bacterium

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255076_bin.3_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255078 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Terrimonas sp.

characteristic: organism

text: uncultured Terrimonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Terrimonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255078_bin.9_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255079 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Terrimonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Terrimonas sp.

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255079_bin.10_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Methylophaga sp.

characteristic: organism

text: uncultured Methylophaga sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Piscirickettsiaceae;g__Methylophaga;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255079_bin.8_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255080 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: Pseudomonas alcaliphila

characteristic: project name

characteristic: sample derived from

text: Pseudomonas alcaliphila

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas alcaliphila

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255080_bin.1_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Verrucomicrobia bacterium

characteristic: organism

text: uncultured Verrucomicrobia bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255080_bin.10_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Lysobacter sp.

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

characteristic: project name

characteristic: sample derived from

text: uncultured Lysobacter sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255080_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Streptomyces sp.

characteristic: organism

text: uncultured Streptomyces sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255080_bin.8_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: Acidovorax radicis

characteristic: project name

characteristic: sample derived from

text: Acidovorax radicis

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Acidovorax;s__Acidovorax radicis

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255080_bin.9_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255083 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Verrucomicrobiales bacterium

characteristic: organism

text: uncultured Verrucomicrobiales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255083_bin.10_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Flavobacterium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacterium sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255083_bin.2_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Bacteroidetes bacterium

characteristic: organism

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255083_bin.23_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Chitinophagaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Chitinophagaceae bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255083_bin.6_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Sphingosinicella sp.

characteristic: organism

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

text: uncultured Sphingosinicella sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingosinicella;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255083_bin.8_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255084 of study SRP351203.

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Pseudomonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255084_bin.2_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255085 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

characteristic: organism

text: uncultured Pseudomonas sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255085_bin.6_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Arenimonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Arenimonas sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255085_bin.7_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255086 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Lautropia sp.

characteristic: organism

text: uncultured Lautropia sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255086_bin.13_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Sphingopyxis sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingopyxis sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255086_bin.15_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17255087 of study SRP351203.

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Cellvibrio sp.

characteristic: organism

text: Here, taxonomic and (meta)genomic features of the rhizosphere microbiome were mapped as quantitative traits of a tomato recombinant inbred line population. This is the metagenomic part of the project (the first part (amplicon sequences) is stored under the BioProject PRJNA787039).

text: uncultured Cellvibrio sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cellvibrionales;f__Cellvibrionaceae;g__Cellvibrio;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255087_bin.1_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3.0

characteristic: binning software

text: plant

characteristic: broad-scale environmental context

text: EBI-EMG

text: CheckM

text: rhizosphere

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: rhizosphere metagenome

text: tomato

text: rhizosphere metagenome

text: uncultured Chitinophagaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Chitinophagaceae bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR17255087_bin.12_metawrap_v1.3.0_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3.0

text: plant

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: rhizosphere

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: rhizosphere metagenome

text: tomato

characteristic: local environmental context

text: rhizosphere metagenome

characteristic: metagenomic source

text: uncultured Marinobacter sp.

characteristic: organism

text: uncultured Marinobacter sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Alteromonadales;f__Alteromonadaceae;g__Marinobacter;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR17255087_bin.13_metawrap_v1.3.0_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Dianalabs, Geneva, Switzerland

characteristic: collecting institution

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

characteristic: collector name

text: Switzerland

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-DIA-161601816001/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Dianalabs, Geneva, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

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