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characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 17, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 18, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number19, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: FASTQ_Generation_2018-12-17_00_11_50Z-143786102

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 20, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number 24, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 25, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 26, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 28, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number 29, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 30, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number 31, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 32, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 33, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 35, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number 37, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 40, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number 41, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 42, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Chacahua coastal lagoon sediment sample number 43, rainy season

characteristic: description

text: Tropical Coastal Lagoon

characteristic: environment (biome)

text: Coastal Lagoon

characteristic: environment (feature)

text: Soil, mud, sand

text: Mexico

text: eukaryote

text: sediment metagenome

text: sediment metagenome

text: sediment

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSIDAD DEL MAR

text: public

text: Chacahua coastal lagoon sediment sample number 44, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

text: Mexico

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: sediment metagenome

text: FASTQ_Generation_2018-12-17_00_11_50Z-143786102

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina Miseq

characteristic: sequencing method


text: UNIVERSIDAD DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chacahua coastal lagoon sediment sample number 45, rainy season

text: Tropical Coastal Lagoon

text: Coastal Lagoon

text: Soil, mud, sand

characteristic: environment (material)

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: eukaryote

text: sediment metagenome

characteristic: organism

text: sediment metagenome

text: sediment

text: Illumina Miseq

characteristic: title


TelfairiaRAD

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

text: public

characteristic: SRA accession

text: TelfairiaRAD

tag: Namespace:Patrick Favre

characteristic: Submitter Id

characteristic: collection date

text: normal conditions

characteristic: description

text: Nigeria

text: Telfairia occidentalis

text: flowering stage

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf (PO:0025034)

characteristic: plant structure

text: Telfairia occidentalis

text: Telfairia occidentalis farward


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Indian Institute of Science Education and Research (IISER), Kolkata

text: Wt Vibrio cholerae

text: Vibrio cholerae O1 biovar El Tor str. N16961

characteristic: serotype

characteristic: strain

text: Wild Type


characteristic: ENA-CHECKLIST

text: Indian Institute of Science Education and Research (IISER), Kolkata

text: public

text: Vibrio cholerae (?cgtA::kanr)

characteristic: organism

text: N16961 (?cgtA::kanr)

text: cgtA knockdown

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Max Planck Institute for Marine Microbiology

text: seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 μm - and 3 μm - pore-size polycarbonate filters and finally filtered onto 0.2 μm pore-size polycarbonate filter, frozen at -80°C. This sample refers to the 0.2 - 3 μm fraction

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: microbial feature [ENVO:00002150]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: North Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: 2020 Helgoland Spring Bloom Metagenomes

characteristic: project name

text: marine metagenome

text: Pacific Biosciences Sequel II

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

text: Max Planck Institute for Marine Microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

text: microbial feature [ENVO:00002150]

text: coastal sea water [ENVO:00002150]

text: North Sea

text: metagenome

text: marine metagenome

text: 2020 Helgoland Spring Bloom Metagenomes

text: marine metagenome

text: Pacific Biosciences Sequel II

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: microbial feature [ENVO:00002150]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: North Sea

characteristic: geographic location (country and/or sea)

text: metagenome

text: marine metagenome

characteristic: organism

text: 2020 Helgoland Spring Bloom Metagenomes

text: marine metagenome

text: Illumina HiSeq 2500

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: marine biome [ENVO:00000447]

text: microbial feature [ENVO:00002150]

text: coastal sea water [ENVO:00002150]

text: North Sea

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: marine metagenome

text: 2020 Helgoland Spring Bloom Metatranscriptomes

characteristic: project name

text: marine metagenome

text: Illumina HiSeq 3000

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:KK Women's and Children's Hospital, Singapore

characteristic: Submitter Id

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: animal reproductive system cell

text: crab-eating macaque

characteristic: common name

text: Protocols: Macaca fascicularis testis tissue was incubated in dissociation buffer containing 200 U/mL collagenase I (Gibco, 17100017), for up to 5 mins with gentle agitation to dissociate tubules. The supernatant, containing mostly interstitial cells, was removed and fresh dissociation buffer containing collagenase, with 2.4 U/mL dispase II Gibco, 17105041) and 1 mM CaCl2 in Hanks Balanced Salt Solution (HBSS) was added to the sample, and incubation was performed at 37 °C for 30 minutes in a water bath. Tubes were agitated with shaking every 5 minutes until tissue is dissociated fully into single cells. Enzymatic digest was quenched by the addition of 10% FBS. Cells are then washed and resuspended in PBS, and filtered through a 40uM strainer in order to obtain a suspension of single-cells. Dissociated unsorted testes cells were cryopreserved in DMEM with 20% FBS and 10% DMSO, at a concentration of 5000 cells/uL. Suspended cells were let to stand on ice for 15 minutes before moving to a chilled cryo-freezing container. The container was then placed in a -80 °C freezer. Cells were stored in -80 °C freezer for long term storage. Cells were thawed in the water bath at 37 °C for 1min. Cells were then transferred to a 50mL tube. Cryovials were rinsed with 1mL of prewarmed DMEM with 10% FBS slowly added to the tube. Cells were diluted sequentially by incremental 1:1 volume additions of cell media 5 times with 1min wait intervals between additions. Tubes were then centrifuged at 300rcf for 5min. For 10X Genomics Single Cell ATAC-Seq, supernatant was removed, and cell pellets were resuspended in 1mL of PBS with 0.04% BSA and transferred to 2mL tubes. Tubes were centrifuged again at 300rcf for 5min. The supernatant was removed, and pellets were resuspended in 500uL of PBS with 0.04% BSA. Cell suspensions were then passed through a 40um cell strainer, and cell concentration was determined using a haemacytometer. With an estimate nuclei recovery of 6000, 2.2uL nuclei suspension and 2.8uL of Diluted Nuclei Buffer was added to 10uL of Transposition Mix. The mixture was incubated in a thermal cycler at 37 °C for 1h and held at 4 °C. Transposed nuclei were subsequently loaded into each channel of a Chromium Next GEM Chip H (10x Genomics, PN-1000162). A Chromium Next GEM Single Cell ATAC Library & Gel Bead Kit v1.1 (10x Genomics, PN-1000176) was used for GEM generation, barcoding and library construction, following manufacturer’s protocol (Chromium Next GEM Single Cell ATAC Reagent Kits User Guide, v1.1 Chemistry).

characteristic: description

text: juvenile

characteristic: developmental stage

text: not applicable

characteristic: isolate

text: Macaca fascicularis

text: Macaca fascicularis

text: testis

characteristic: organism part

text: Macaca fascicularis

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

text: KK Women's and Children's Hospital, Singapore

characteristic: INSDC center name

text: public

text: ArrayExpress

text: animal reproductive system cell

text: crab-eating macaque

text: juvenile

text: not applicable

text: Macaca fascicularis

characteristic: organism

text: Macaca fascicularis

text: testis

text: Macaca fascicularis

text: male

characteristic: title


characteristic: ENA first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: animal reproductive system cell

text: crab-eating macaque

text: adult

text: not applicable

text: Macaca fascicularis

text: Macaca fascicularis

text: testis

text: Macaca fascicularis

text: male


E-MTAB-11776:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11776:Sample 1

tag: Namespace:Laboratory for Molecular Biodiscovery, KU Leuven

unit: day

text: ArrayExpress

text: zebrafish

text: Protocols: 5 dpf zebrafish larvae were anesthetized and decapitated using a razor blade. 10 heads were pooled in quadruplicate per genotype. otal RNA was extracted using TRIzol reagent (Invitrogen), followed by phenol-chlorophorm extraction and isopropanol precipitation. After ethanol washes, the RNA pellet was air-dried, dissolved in nuclease-free water (Fermentas). Illumina TruSeq Stranded mRNA-Seq sample preparation kit was used to prepare the mRNA sequencing library according to the manufacturer guidelines.

text: larval stage

text: depdc5-/- x tsc2-/-

characteristic: genotype

text: pool of 10 larvae

characteristic: individual

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

characteristic: strain

text: Sample 1


E-MTAB-11776:Sample 10

text: Laboratory for Molecular Biodiscovery, KU Leuven

text: public

text: E-MTAB-11776:Sample 10

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

characteristic: description

text: larval stage

characteristic: developmental stage

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

characteristic: organism part

text: Danio rerio

text: non available

text: AB

text: Sample 10


E-MTAB-11776:Sample 11

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11776:Sample 11

text: ArrayExpress

text: zebrafish

text: larval stage

text: pool of 10 larvae

text: Danio rerio

characteristic: organism

text: Danio rerio

text: head

text: Danio rerio

text: non available

characteristic: sex

text: AB

text: Sample 11

characteristic: title


E-MTAB-11776:Sample 12

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11776:Sample 12

text: ArrayExpress

text: zebrafish

text: larval stage

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

text: Sample 12


E-MTAB-11776:Sample 13

text: public

text: E-MTAB-11776:Sample 13

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: larval stage

text: wild type genotype

characteristic: genotype

text: pool of 10 larvae

characteristic: individual

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

characteristic: strain

text: Sample 13


E-MTAB-11776:Sample 14

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-11776:Sample 14

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: larval stage

characteristic: developmental stage

text: wild type genotype

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

characteristic: organism part

text: Danio rerio

text: non available

text: AB

text: Sample 14


E-MTAB-11776:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-11776:Sample 15

text: ArrayExpress

text: zebrafish

text: larval stage

text: wild type genotype

text: pool of 10 larvae

text: Danio rerio

characteristic: organism

text: Danio rerio

text: head

text: Danio rerio

text: non available

characteristic: sex

text: AB

text: Sample 15

characteristic: title


E-MTAB-11776:Sample 16

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11776:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: zebrafish

text: larval stage

text: wild type genotype

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

text: Sample 16


E-MTAB-11776:Sample 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-11776:Sample 2

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: larval stage

text: depdc5-/- x tsc2-/-

characteristic: genotype

text: pool of 10 larvae

characteristic: individual

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

characteristic: strain

text: Sample 2


E-MTAB-11776:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11776:Sample 3

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: larval stage

characteristic: developmental stage

text: depdc5-/- x tsc2-/-

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

characteristic: organism part

text: Danio rerio

text: non available

text: AB

text: Sample 3


E-MTAB-11776:Sample 4

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11776:Sample 4

text: ArrayExpress

text: zebrafish

text: larval stage

text: depdc5-/- x tsc2-/-

text: pool of 10 larvae

text: Danio rerio

characteristic: organism

text: Danio rerio

text: head

text: Danio rerio

text: non available

characteristic: sex

text: AB

text: Sample 4

characteristic: title


E-MTAB-11776:Sample 5

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11776:Sample 5

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: zebrafish

text: larval stage

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

text: Sample 5


E-MTAB-11776:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11776:Sample 6

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: larval stage

characteristic: genotype

text: pool of 10 larvae

characteristic: individual

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

characteristic: strain

text: Sample 6


E-MTAB-11776:Sample 7

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11776:Sample 7

text: ArrayExpress

text: zebrafish

characteristic: common name

characteristic: description

text: larval stage

characteristic: developmental stage

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

characteristic: organism part

text: Danio rerio

text: non available

text: AB

text: Sample 7


E-MTAB-11776:Sample 8

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-11776:Sample 8

text: ArrayExpress

text: zebrafish

text: larval stage

text: pool of 10 larvae

text: Danio rerio

characteristic: organism

text: Danio rerio

text: head

text: Danio rerio

text: non available

characteristic: sex

text: AB

text: Sample 8

characteristic: title


E-MTAB-11776:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11776:Sample 9

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: zebrafish

text: larval stage

text: pool of 10 larvae

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: non available

text: AB

text: Sample 9


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Klinikum rechts der Isar, II. Medizinische Klinik

text: human

text: HCT116 cells untreated, Polysomal RNA (Barcode AAAACT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Klinikum rechts der Isar, II. Medizinische Klinik

text: public

text: human

characteristic: common name

text: HCT116 cells untreated, Total RNA (Barcode AAAGTT)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode AAATTG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells untreated, Polysomal RNA (Barcode AAGATT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells untreated, Total RNA (Barcode AATACA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode AATCTT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells untreated, Polysomal RNA (Barcode AATTCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells untreated, Total RNA (Barcode ACAATA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode ACCGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells untreated, Polysomal RNA (Barcode ACGGGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode ACTTAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells untreated, Total RNA (Barcode AGACCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells untreated, Total RNA (Barcode AGCGGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells untreated, Polysomal RNA (Barcode ATATAG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells treated with IAA for 6 hours, Total RNA (Barcode ATCAAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode ATGAAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells untreated, Polysomal RNA (Barcode ATTACT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Klinikum rechts der Isar, II. Medizinische Klinik

text: public

text: human

text: 3b-KO cells treated with IAA for 6 hours, Total RNA (Barcode ATTCTA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode ATTTCA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells untreated, Polysomal RNA (Barcode CAAATA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells treated with IAA for 6 hours, Total RNA (Barcode CATTAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells untreated, Polysomal RNA (Barcode CCAACC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells treated with IAA for 6 hours, Polysomal RNA (Barcode CCCACG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells untreated, Polysomal RNA (Barcode CCCCGT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells treated with IAA for 6 hours, Total RNA (Barcode CCCTGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode CCGGAC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells untreated, Polysomal RNA (Barcode CCGTCG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells treated with IAA for 6 hours, Total RNA (Barcode CCTGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode CGAGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells untreated, Polysomal RNA (Barcode CGCCCT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells treated with IAA for 6 hours, Total RNA (Barcode CGCGCA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells untreated, Total RNA (Barcode CGGTGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells untreated, Polysomal RNA (Barcode CGTGGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Klinikum rechts der Isar, II. Medizinische Klinik

text: public

text: human

text: 3k-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode CTATAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells treated with IAA for 6 hours, Total RNA (Barcode CTGCGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells untreated, Total RNA (Barcode GACCGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells untreated, Polysomal RNA (Barcode GAGCGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells treated with IAA for 6 hours, Total RNA (Barcode GCACGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells untreated, Total RNA (Barcode GCCAGG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells untreated, Polysomal RNA (Barcode GCCCTC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells treated with IAA for 6 hours, Total RNA (Barcode GCCGTG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells treated with IAA for 6 hours, Polysomal RNA (Barcode GCTAGA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells untreated, Total RNA (Barcode GCTCGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode GGAGCC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells treated with IAA for 6 hours, Total RNA (Barcode GGCCAC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells untreated, Total RNA (Barcode GGCGTC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells untreated, Polysomal RNA (Barcode GGGATT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode GGGCAG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells treated with IAA for 6 hours, Total RNA (Barcode GGGGAC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Klinikum rechts der Isar, II. Medizinische Klinik

text: public

text: human

text: 3f-KO cells untreated, Total RNA (Barcode GGGTCG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode GGTGGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells untreated, Total RNA (Barcode GTACCG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells treated with IAA for 6 hours, Total RNA (Barcode GTGCGC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells untreated, Total RNA (Barcode GTTCGA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells untreated, Polysomal RNA (Barcode GTTTAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells treated with IAA for 6 hours, Total RNA (Barcode TAAAGT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells untreated, Total RNA (Barcode TAAGAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells untreated, Polysomal RNA (Barcode TAATGA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells treated with IAA for 6 hours, Total RNA (Barcode TACTAT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells untreated, Total RNA (Barcode TAGTAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells untreated, Polysomal RNA (Barcode TATAGA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells treated with IAA for 6 hours, Total RNA (Barcode TATGAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3k-KO cells untreated, Total RNA (Barcode TATTGT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode TCTGCA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: HCT116 cells treated with IAA for 6 hours, Polysomal RNA (Barcode TGTTTA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: Klinikum rechts der Isar, II. Medizinische Klinik

text: public

text: human

text: HCT116 cells treated with IAA for 6 hours, Total RNA (Barcode TTAATC)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3a-KO cells untreated, Total RNA (Barcode TTAGTT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode TTATTG)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3b-KO cells treated with IAA for 6 hours, Total RNA (Barcode TTGAAA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells untreated, Total RNA (Barcode TTTACA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3f-KO cells treated with IAA for 6 hours, Polysomal RNA (Barcode TTTCTT)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: 3e-KO cells treated with IAA for 6 hours, Total RNA (Barcode TTTTGA)

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: public

text: human

text: Reads not assigned to any sample barcode

text: Homo sapiens

text: Homo sapiens

text: RNASample


text: UNIVERSITY OF VIENNA

text: public

tag: Namespace:UNIVERSITY OF VIENNA

text: human

text: Homo sapiens

text: Homo sapiens


text: UNIVERSIDAD DE CANTABRIA

text: public

tag: Namespace:UNIVERSIDAD DE CANTABRIA

text: human

text: human glomerulosclerosis sample

text: Homo sapiens

text: Homo sapiens


text: UNIVERSIDAD DE CANTABRIA

text: public

text: human

text: human control sample

text: Homo sapiens

text: Homo sapiens