characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-15181/2020

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

text: Human

text: n_infections=2,last_infection_date=2020-12-14

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-54219/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-07-05

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

tag: Namespace:Dutch COVID-19 response team

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

characteristic: isolation source host associated

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-FIRST-PUBLIC

text: University of Oxford

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: UNIVERSITY OF OXFORD

characteristic: barcoding center

text: COPO

text: ROTHAMSTED

characteristic: collected by

text: ROTHAMSTED

text: United Kingdom

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: England

characteristic: geographic location (region and locality)

text: ROTHAMSTED

characteristic: identified by

text: ROTHAMSTED

text: adult

characteristic: lifestage

text: Dilophus febrilis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: original collection date

text: UK

characteristic: original collection location

text: DTOL

characteristic: project name

characteristic: sample same as

text: Dilophus febrilis

characteristic: specimen id

text: NOT PROVIDED

characteristic: specimen voucher

text: 583241f9-5110-4004-bab5-2185c0eb9147-dtol

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: SRO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Spital Langenthal, SRO AG, Labor

characteristic: collecting institution

characteristic: collection date

text: Alexander Imhof, Cedric Howald, Lorenzo Cerutti, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-SRO-500010_3709/2022

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2021-11-22

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: n_infections=2,last_infection_date=2021-11-08

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-89176/2021

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host description

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: active surveillance in response to outbreak


text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_date=2021-07-26

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

characteristic: title


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Department of Clinical Microbiology and Center for Genomic Medicine, Rigshospitalet, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

characteristic: SRA accession

tag: Namespace:Dr. Risch

text: SIB

characteristic: broker name

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-20220516R11618/2022


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-14

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-26025/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-230912/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


text: University of Antwerp

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:University of Antwerp

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

characteristic: isolate

text: sputum

characteristic: isolation source

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Mtb clinical isolates

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2020-09-28

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

characteristic: host common name

text: n_infections=2,last_infection_date=2020-12-07

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Nordjylland

text: Human

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-176641/2021

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Sjaelland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Midtjylland

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Syddanmark

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Hovedstaden

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Syddanmark

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-46714/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


text: Yeast

characteristic: ArrayExpress-PHENOTYPE

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Yeast

characteristic: phenotype

text: Saccharomyces cerevisiae

characteristic: subject id

characteristic: title


characteristic: BCS

characteristic: CADESI

characteristic: CADESIall

characteristic: DNAconcentration

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Lubeck

characteristic: INSDC center name

text: public

characteristic: PVAS

characteristic: SRA accession

tag: Namespace:University of Lubeck

characteristic: Submitter Id

characteristic: ageMonths

characteristic: batch

text: dog

characteristic: control

characteristic: description

text: prescriptionDiet

characteristic: diet

text: microbiome

characteristic: environmental package

text: ADpre

characteristic: group

text: indoor

characteristic: housing

text: Canis lupus familiaris

text: predonisorone

characteristic: previousTreatment

text: spring

characteristic: samplingSeason

text: Canis lupus familiaris

text: MiSeq

characteristic: sequencing method

text: F

characteristic: sex

text: chickenInnerFilet

characteristic: treats


characteristic: BCS

characteristic: CADESI

characteristic: CADESIall

characteristic: DNAconcentration

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: dog

characteristic: common name

text: microbiome

text: ADtreatment

text: indoor

text: Canis lupus familiaris

characteristic: organism

characteristic: otherAnimals

text: winter

text: Canis lupus familiaris

text: MiSeq

text: SF

characteristic: title


text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

characteristic: broker name

text: CHRIS FLETCHER | DAVID ALEXANDER | BETHANY REED

characteristic: collected by

text: NATURAL HISTORY MUSEUM | ECO MARINE CONSULTANTS | ECO MARINE CONSULTANTS

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: England|Thames Estuary

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: CHRIS FLETCHER

characteristic: identified by

text: NATURAL HISTORY MUSEUM

text: adult

characteristic: lifestage

text: Harmothoe clavigera

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Harmothoe clavigera

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: 5d3b2149-1551-423b-8f1a-431e675a673f-DTOL-specimen

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: LAUREN HUGHES | CHRIS FLETCHER | BRIAN SMITH

text: NATURAL HISTORY MUSEUM | NATURAL HISTORY MUSEUM | NATURAL HISTORY MUSEUM

text: United Kingdom

unit: m

characteristic: geographic location (depth)

text: Scotland|Off The Lion, Isle of Cumbrae

text: NOT COLLECTED

text: LAUREN HUGHES

text: NATURAL HISTORY MUSEUM

text: adult

text: Sphaerodorum gracilis

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Sphaerodorum gracilis

text: HERMAPHRODITE MONOECIOUS

text: 3e560c28-1e4e-4842-a04f-51ec625c03c0-DTOL-specimen

characteristic: title


text: Natural History Museum

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: GEOFF OXFORD

characteristic: collected by

text: UNIVERSITY OF YORK

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: England|University of York, Heslington, YO10 5DD

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: GEOFF OXFORD

characteristic: identified by

text: UNIVERSITY OF YORK

text: adult

characteristic: lifestage

text: Paidiscura pallens

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Paidiscura pallens

text: FEMALE

characteristic: sex

characteristic: specimen id

text: dac213f8-39c4-4f8b-9275-f78080198f01-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Natural History Museum

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: BRIAN SMITH | INEZ JANUSZCZAK | JAN BECCALONI | JEFFERY THOMPSON | LAURA SIVESS

text: NATURAL HISTORY MUSEUM | THE NATURAL HISTORY MUSEUM | NATURAL HISTORY MUSEUM

text: lugworm

characteristic: common name

text: United Kingdom

text: Scotland|Kames Bay, Isle of Cumbrae

text: NOT COLLECTED

text: CHRIS FLETCHER

text: NATURAL HISTORY MUSEUM

text: adult

text: Arenicola marina

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Arenicola marina

text: HERMAPHRODITE MONOECIOUS

text: 2ae6dc0e-b41b-41fc-a492-cecd8ba07d80-DTOL-specimen

characteristic: tolid


text: Natural History Museum

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: STEPHEN MORAN

characteristic: collected by

text: HIGHLAND BIOLOGICAL RECORDING GROUP

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland|United Kingdom|Scotland|Beinn Eighe National Nature Reserve National Nature Reserve

characteristic: geographic location (region and locality)

text: NOT COLLECTED

characteristic: habitat

text: STEPHEN MORAN

characteristic: identified by

text: HIGHLAND BIOLOGICAL RECORDING GROUP

text: adult

characteristic: lifestage

text: Muellerianella extrusa

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Muellerianella extrusa

text: MALE

characteristic: sex

text: b19c349c-800c-46ca-8d1b-2028a79e8760-DTOL-specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Statens Serum Institut and the Danish Covid19 Genome Consortium (DCGC)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Hovedstaden

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-198606/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

characteristic: geographic location (country and/or sea)

text: Midtjylland

characteristic: geographic location (region and locality)

text: Human

text: n_infections=2,last_infection_date=2020-10-26

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

text: Syddanmark

text: Human

characteristic: host common name

text: n_infections=2,last_infection_id=hCoV-19/Denmark/DCGC-85604/2021

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Nordjylland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

text: 2017-04-27 08:00

text: V2 Sample 4B1

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

text: Volunteer 2

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Lower back

characteristic: sample site

text: skin

characteristic: sample type

text: LB

text: human skin metagenome

text: male

characteristic: sex

text: Time 3

characteristic: timepoint

text: Clothes impact on microbiome and metabolome

characteristic: title

text: Silver

characteristic: tshirt

text: Week 6

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-04 08:00

text: V2 Sample 5B3

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 2

characteristic: host subject id

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: male

text: Time 4

text: Non-silver

text: Week 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-05-04 08:00

text: V2 Sample 5B5

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

text: Volunteer 2

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Chest

characteristic: sample site

text: skin

characteristic: sample type

text: C

text: human skin metagenome

text: male

characteristic: sex

text: Time 4

characteristic: timepoint

characteristic: title

text: Non-silver

characteristic: tshirt

text: Week 7

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-04 08:00

text: V2 Sample 5B6

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 2

characteristic: host subject id

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Upper back

text: skin

text: UB

text: human skin metagenome

text: male

text: Time 4

text: Non-silver

text: Week 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-05-15 10:00

text: V2 Sample 6F8

text: FALSE

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: Control

text: Volunteer 2

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Blank

characteristic: sample site

text: control swab

characteristic: sample type

text: Blank

text: metagenome

text: male

characteristic: sex

text: Time 5

characteristic: timepoint

characteristic: title

text: Non-silver

characteristic: tshirt

text: Week 8

characteristic: week


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-18 08:00

text: V2 Sample 7A9

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 2

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: male

text: Time 6

text: Non-silver

text: Week 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-25 10:30

text: V2 Sample 8A9

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 2

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Right armpit

characteristic: sample site

text: skin

characteristic: sample type

text: RA

text: human skin metagenome

text: male

characteristic: sex

text: Time 7

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 10

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-06-08 08:00

text: V3 Sample 10B4

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Left armpit

text: skin

text: LA

text: human skin metagenome

text: female

text: Time 9

text: Silver

text: Week 12


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-06-08 08:00

text: V3 Sample 10B7

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 3

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Lower back

characteristic: sample site

text: skin

characteristic: sample type

text: LB

text: human skin metagenome

text: female

characteristic: sex

text: Time 9

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 12

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-04 08:00

text: V3 Sample 5C1

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

text: does not notice a difference in shirts

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Lower back

text: skin

text: LB

text: human skin metagenome

text: female

text: Time 4

text: Non-silver

text: Week 7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-18 08:00

text: V3 Sample 7B4

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Asian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 3

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Left armpit

characteristic: sample site

text: skin

characteristic: sample type

text: LA

text: human skin metagenome

text: female

characteristic: sex

text: Time 6

characteristic: timepoint

characteristic: title

text: Non-silver

characteristic: tshirt

text: Week 9

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-26 09:40

text: V3 Sample 8D1

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Asian

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 3

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Lower back

text: skin

text: LB

text: human skin metagenome

text: female

text: Time 7

text: Silver

text: Week 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-06-08 08:00

text: V4 Sample 10B12

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 4

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Upper back

characteristic: sample site

text: skin

characteristic: sample type

text: UB

text: human skin metagenome

text: male

characteristic: sex

text: Time 9

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 12

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-06 08:00

text: V4 Sample 1C4

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: cross fit

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 4

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Left armpit

text: skin

text: LA

text: human skin metagenome

text: male

text: Time 0

text: Personal

text: Week 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-04-20 08:00

text: V4 Sample 3C3

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 4

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Right armpit

characteristic: sample site

text: skin

characteristic: sample type

text: RA

text: human skin metagenome

text: male

characteristic: sex

text: Time 2

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 5

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-26 08:00

text: V4 Sample 8B5

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: cross fit

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 4

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Chest

text: skin

text: C

text: human skin metagenome

text: male

text: Time 7

text: Silver

text: Week 10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-06-08 08:00

text: V5 Sample 10C3

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 5

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Right armpit

characteristic: sample site

text: skin

characteristic: sample type

text: RA

text: human skin metagenome

text: female

characteristic: sex

text: Time 9

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 12

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_11272:11272.Cl.V5.11F12.F.71332

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-18 00:00

text: V5 Sample 11F12

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Caucasian

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 5

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Fecal samples

text: feces

text: F

text: human gut metagenome

text: female

text: Time 6

text: Non-silver

text: Week 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11272:11272.Cl.V5.11H4.F.71324

text: 2017-06-01 00:00

text: V5 Sample 11H4

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 5

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Fecal samples

characteristic: sample site

text: feces

characteristic: sample type

text: F

text: human gut metagenome

text: female

characteristic: sex

text: Time 8

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 11

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-13 08:00

text: V5 Sample 2C6

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: cross fit

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 5

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Upper back

text: skin

text: UB

text: human skin metagenome

text: female

text: Time 1

text: Silver

text: Week 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-04-13 08:00

text: V5 Sample 2C7

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 5

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Lower back

characteristic: sample site

text: skin

characteristic: sample type

text: LB

text: human skin metagenome

text: female

characteristic: sex

text: Time 1

characteristic: timepoint

characteristic: title

text: Silver

characteristic: tshirt

text: Week 4

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-27 08:00

text: V5 Sample 4C6

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: cross fit

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 5

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Upper back

text: skin

text: UB

text: human skin metagenome

text: female

text: Time 3

text: Silver

text: Week 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-03 10:00

text: V5 Sample 5A4

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 5

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Left armpit

characteristic: sample site

text: skin

characteristic: sample type

text: LA

text: human skin metagenome

text: female

characteristic: sex

text: Time 4

characteristic: timepoint

characteristic: title

text: Non-silver

characteristic: tshirt

text: Week 7

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-11 08:00

text: V5 Sample 6D1

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

text: Previous shirt smells less?

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 5

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Lower back

text: skin

text: LB

text: human skin metagenome

text: female

text: Time 5

text: Non-silver

text: Week 8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2017-05-18 08:00

text: V5 Sample 7C4

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

text: not collected

text: Homo sapiens

text: Volunteer 5

text: not collected

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Left armpit

characteristic: sample site

text: skin

characteristic: sample type

text: LA

text: human skin metagenome

text: female

characteristic: sex

text: Time 6

characteristic: timepoint

characteristic: title

text: Non-silver

characteristic: tshirt

text: Week 9

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Syddanmark

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Hovedstaden

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


text: public

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: Nordjylland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

characteristic: host description

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Danish Covid-19 Genome Consortium

text: Original

text: Denmark

text: Sjaelland

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Danish Covid-19 Genome Consortium

characteristic: collector name

text: Original

text: Denmark

text: Midtjylland

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

tag: Namespace:ETH ZURICH D-BSSE

text: SIB

characteristic: broker name

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

text: Christian Beisel, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Christiane Beckmann, Matteo Carrara, Shuqing Yu, Franziska Singer, Andrea Patrizia Salzmann, Sebastian Kurscheid, Henriette Kurth, Maurice Redondo, Olivier Kobel, Christoph Noppen, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-ETHZ-37326783/2022


text: ETH ZURICH D-BSSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Labor team w AG; Blumeneggstrasse 55, 9403 Goldach

text: Ivan Topolsky, Sarah Nadeau, Chaoran Chen, Louis du Plessis, Rebekka Pohl, Monika Bucher, Andreas Lindauer, Catharine Aquino Fournier, Daniel Ehrsam, Isabel Stürmer, Andreia Cabral de Gouvea, Maria Domenica Moccia, Simon Grüter, Timothy Sykes, Lennart Opitz, Hai Bui, Christian Urban, Matteo Carrara, Shuqing Yu, Franziska Singer, Griffin White, Laura Neff, Doris Popovic, Andrea Patrignani, Jay Tracy, Ralph Schlapbach, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Icer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH D-BSSE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-ETHZ-37299864/2022

characteristic: title


characteristic: BCS

characteristic: CADESI

characteristic: CADESIall

characteristic: DNAconcentration

text: University of Lubeck

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: PVAS

characteristic: ageMonths

characteristic: batch

text: dog

characteristic: common name

characteristic: control

characteristic: description

text: homeMade

characteristic: diet

text: microbiome

characteristic: environmental package

text: ADtreatment

characteristic: group

text: indoor

characteristic: housing

text: Canis lupus familiaris

text: spring

characteristic: samplingSeason

text: Canis lupus familiaris

text: MiSeq

characteristic: sequencing method

text: CM

characteristic: sex


characteristic: BCS

characteristic: CADESI

characteristic: CADESIall

characteristic: DNAconcentration

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Lubeck

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: dog

text: commercialDry

text: microbiome

text: ADtreatment

text: indoor

text: Canis lupus familiaris

characteristic: organism

text: spring

text: Canis lupus familiaris

text: MiSeq

text: CM

characteristic: title

text: chickenInnerFilet

characteristic: treats


text: University of Lubeck

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: PVAS

characteristic: ageMonths

characteristic: batch

text: dog

characteristic: common name

characteristic: control

characteristic: description

text: prescriptionDiet

characteristic: diet

text: microbiome

characteristic: environmental package

text: ADtreatment

characteristic: group

text: indoor

characteristic: housing

text: Canis lupus familiaris

text: spring

characteristic: samplingSeason

text: Canis lupus familiaris

text: MiSeq

text: SF


characteristic: CADESI

characteristic: CADESIall

characteristic: DNAconcentration

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Lubeck

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: dog

text: homeMade

text: microbiome

text: ADtreatment

text: indoor

text: Canis lupus familiaris

characteristic: organism

characteristic: otherAnimals

text: fall

text: Canis lupus familiaris

text: MiSeq

characteristic: sequencing method

text: SF

characteristic: sex


text: University of Lubeck

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: batch

text: dog

characteristic: common name

characteristic: control

characteristic: description

text: microbiome

characteristic: environmental package

text: control

characteristic: group

text: Canis lupus familiaris

text: Canis lupus familiaris

text: MiSeq

characteristic: title


characteristic: BCS

characteristic: DNAconcentration

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Lubeck

characteristic: INSDC center name

text: public

characteristic: ageMonths

text: dog

text: commercialDry

characteristic: diet

text: microbiome

text: healthy

text: outdoor

characteristic: housing

text: Canis lupus familiaris

text: spring

characteristic: samplingSeason

text: Canis lupus familiaris

text: MiSeq

text: CM


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-26 08:30

text: V5 Sample 8B11

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 5

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Chest

characteristic: sample site

text: skin

characteristic: sample type

text: C

text: human skin metagenome

text: female

characteristic: sex

text: Time 7

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 10

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-06-01 08:00

text: V5 Sample 9C9

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: cross fit

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

text: not collected

text: Homo sapiens

text: Volunteer 5

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: female

text: Time 8

characteristic: title

text: Silver

text: Week 11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-06-01 08:00

text: V5 Sample 9G12

text: FALSE

text: Free-living

text: Free-living (non-saline)

text: Solid (non-saline)

text: Surface (non-saline)

text: urban biome

text: anthropogenic habitat

text: misc environment

text: anthropogenic environmental material

text: USA:CA:San Diego

text: not collected

text: not collected

characteristic: host height

text: Volunteer 5

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Clothes Left armpit

characteristic: sample site

text: surface

characteristic: sample type

text: CLA

text: indoor metagenome

text: female

characteristic: sex

text: Time 8

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 11

characteristic: week


characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_11272:11272.Cl.V6.11G10.F.71373

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-06-08 00:00

text: V6 Sample 11G10

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 6

characteristic: host taxid

text: not collected

text: years

text: cm

text: kg

text: human gut metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Fecal samples

text: feces

text: F

text: human gut metagenome

text: female

text: Time 9

characteristic: title

text: Silver

text: Week 12


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 2017-04-20 08:00

text: V6 Sample 3D6

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

text: not collected

characteristic: host height

text: Homo sapiens

text: Volunteer 6

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Upper back

characteristic: sample site

text: skin

characteristic: sample type

text: UB

text: human skin metagenome

text: female

characteristic: sex

text: Time 2

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 5

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-27 08:00

text: V6 Sample 4C10

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 6

characteristic: host taxid

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Left armpit

text: skin

text: LA

text: human skin metagenome

text: female

text: Time 3

characteristic: title

text: Silver

text: Week 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 2017-05-11 08:00

text: V6 Sample 6H1

text: FALSE

text: Free-living

text: Free-living (non-saline)

text: Solid (non-saline)

text: Surface (non-saline)

text: urban biome

text: anthropogenic habitat

text: misc environment

text: anthropogenic environmental material

text: USA:CA:San Diego

text: not collected

text: not collected

characteristic: host height

text: Volunteer 6

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: indoor metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Clothes Left armpit

characteristic: sample site

text: surface

characteristic: sample type

text: CLA

text: indoor metagenome

text: female

characteristic: sex

text: Time 5

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 8

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-06-01 08:00

text: V6 Sample 9D7

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 6

characteristic: host taxid

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Lower back

text: skin

text: LB

text: human skin metagenome

text: female

text: Time 8

characteristic: title

text: Silver

text: Week 11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: qiita_sid_11272:11272.Cl.V7.11G2.F.71283

text: 2017-05-19 00:00

text: V7 Sample 11G2

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

text: not collected

characteristic: host height

text: Homo sapiens

text: Volunteer 7

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Fecal samples

characteristic: sample site

text: feces

characteristic: sample type

text: F

text: human gut metagenome

text: male

characteristic: sex

text: Time 6

characteristic: timepoint

text: Non-silver

characteristic: tshirt

text: Week 9

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_11272:11272.Cl.V7.11H7.F.71322

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-05-30 00:00

text: V7 Sample 11H7

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal distal gut (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 7

characteristic: host taxid

text: not collected

text: years

text: cm

text: kg

text: human gut metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Fecal samples

text: feces

text: F

text: human gut metagenome

text: male

text: Time 8

characteristic: title

text: Silver

text: Week 11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 2017-04-07 10:00

text: V7 Sample 1E9

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

text: human

text: not collected

characteristic: host height

text: Homo sapiens

text: Volunteer 7

characteristic: host subject id

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Right armpit

characteristic: sample site

text: skin

characteristic: sample type

text: RA

text: human skin metagenome

text: male

characteristic: sex

text: Time 0

characteristic: timepoint

text: Personal

characteristic: tshirt

text: Week 3

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-14 10:00

text: V7 Sample 2D8

characteristic: description

text: FALSE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: Control

characteristic: host common name

text: Volunteer 7

text: years

text: cm

text: kg

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Blank

text: control swab

text: Blank

text: metagenome

text: male

text: Time 1

characteristic: title

text: Silver

text: Week 4


characteristic: ENA-CHECKLIST

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 2017-04-07 10:00

text: V8 Sample 1E1

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: surfer

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 8

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Lower back

characteristic: sample site

text: skin

characteristic: sample type

text: LB

text: human skin metagenome

text: female

characteristic: sex

text: Time 0

characteristic: timepoint

text: Personal

characteristic: tshirt

text: Week 3

characteristic: week


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: 2017-04-14 10:00

text: V8 Sample 2D3

characteristic: description

text: FALSE

characteristic: elevation

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: Caucasian

characteristic: ethnicity

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

text: Volunteer 8

text: not collected

text: years

text: cm

text: kg

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Right armpit

text: skin

text: RA

text: human skin metagenome

text: female

text: Time 1

characteristic: title

text: Silver

text: Week 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: 2017-04-21 10:00

text: V8 Sample 3E3

text: FALSE

text: Host-associated

text: Host-associated (non-saline)

text: Animal (non-saline)

text: Animal surface (non-saline)

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: Caucasian

text: USA:CA:San Diego

text: not collected

characteristic: host age

text: human

text: not collected

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 8

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Right armpit

characteristic: sample site

text: skin

characteristic: sample type

text: RA

text: human skin metagenome

text: female

characteristic: sex

text: Time 2

characteristic: timepoint

text: Silver

characteristic: tshirt

text: Week 5

characteristic: week