characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Departamento de Produccion Animal

text: public

tag: Namespace:Departamento de Produccion Animal

text: sheep

text: Female Assaf Suckling lamb 1

text: Ovis aries

characteristic: organism

text: Ovis aries

text: Female 1


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Departamento de Produccion Animal

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: sheep

characteristic: common name

text: Female Assaf Suckling lamb 2

characteristic: description

text: Ovis aries

text: Ovis aries

text: Female 2

characteristic: title


text: Departamento de Produccion Animal

text: public

text: sheep

text: Female Assaf Suckling lamb 3

text: Ovis aries

text: Ovis aries

text: Female 3


text: Departamento de Produccion Animal

text: public

text: sheep

text: Female Assaf Suckling lamb 4

text: Ovis aries

text: Ovis aries

text: Female 4


text: Departamento de Produccion Animal

text: public

text: sheep

text: Female Assaf Suckling lamb 5

text: Ovis aries

text: Ovis aries

text: Female 5


text: Departamento de Produccion Animal

text: public

text: sheep

text: Female Assaf Suckling lamb 6

text: Ovis aries

text: Ovis aries

text: Female 6


text: Departamento de Produccion Animal

text: public

text: sheep

text: Male Assaf suckling lamb 1

text: Ovis aries

text: Ovis aries

text: Male 1


text: Departamento de Produccion Animal

text: public

text: sheep

text: Male Assaf suckling lamb 2

text: Ovis aries

text: Ovis aries

text: Male 2


text: Departamento de Produccion Animal

text: public

text: sheep

text: Male Assaf suckling lamb 3

text: Ovis aries

text: Ovis aries

text: Male 3


text: Departamento de Produccion Animal

text: public

text: sheep

text: Male Assaf suckling lamb 4

text: Ovis aries

text: Ovis aries

text: Male 4


text: Departamento de Produccion Animal

text: public

text: sheep

text: Male Assaf suckling lamb 5

text: Ovis aries

text: Ovis aries

text: Male 5


text: Departamento de Produccion Animal

text: public

text: sheep

text: Male Assaf suckling lamb 6

text: Ovis aries

text: Ovis aries

text: Male 6


Dog 10/22

text: UNIVERSITY OF LIVERPOOL

text: public

text: Dog 10/22

tag: Namespace:UNIVERSITY OF LIVERPOOL

text: University of Liverpool

characteristic: collecting institution

characteristic: collection date

text: Shirley Bonner

characteristic: collector name

text: Faeces

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: domestic

characteristic: host behaviour

text: Dog

characteristic: host common name

text: domestic:semi-enclosed housing

characteristic: host habitat

text: diseased

characteristic: host health state

text: Canis lupus familiaris

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: faeces

characteristic: isolation source host-associated

text: Veterinary practice

characteristic: isolation source non-host-associated

text: Canine coronavirus

text: pet sample

characteristic: sample capture status

text: Canine coronavirus

text: Dog 10/22


Dog 11/22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dog 11/22

characteristic: Submitter Id

text: University of Liverpool

text: Shirley Bonner

text: Faeces

characteristic: description

text: United Kingdom

text: domestic

text: Dog

text: domestic:semi-enclosed housing

text: diseased

text: Canis lupus familiaris

text: not collected

text: faeces

text: Veterinary practice

text: Canine coronavirus

characteristic: organism

text: pet sample

text: Canine coronavirus

text: Dog 11/22

characteristic: title


Dog 12/20

text: UNIVERSITY OF LIVERPOOL

text: public

text: Dog 12/20

text: University of Liverpool

characteristic: collecting institution

characteristic: collection date

text: Shirley Bonner

characteristic: collector name

text: Vomit

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: domestic

characteristic: host behaviour

text: Dog

characteristic: host common name

text: domestic:semi-enclosed housing

characteristic: host habitat

text: diseased

characteristic: host health state

text: Canis lupus familiaris

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: vomit

text: Veterinary practice

text: Canine coronavirus

text: pet sample

text: Canine coronavirus

text: Dog 12/20


Dog 13/22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dog 13/22

characteristic: Submitter Id

text: University of Liverpool

text: Shirley Bonner

text: Faeces

text: United Kingdom

text: domestic

text: Dog

text: domestic:semi-enclosed housing

text: diseased

text: Canis lupus familiaris

text: not collected

text: faeces

characteristic: isolation source host-associated

text: Veterinary practice

characteristic: isolation source non-host-associated

text: Canine coronavirus

text: pet sample

characteristic: sample capture status

text: Canine coronavirus

text: Dog 13/22


Dog 38/22

text: UNIVERSITY OF LIVERPOOL

text: public

text: Dog 38/22

text: University of Liverpool

characteristic: collecting institution

characteristic: collection date

text: Shirley Bonner

characteristic: collector name

text: Faeces

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: domestic

characteristic: host behaviour

text: Dog

characteristic: host common name

text: domestic:semi-enclosed housing

characteristic: host habitat

text: diseased

characteristic: host health state

text: Canis lupus familiaris

characteristic: host scientific name

text: not collected

text: faeces

text: Veterinary practice

text: Canine coronavirus

characteristic: organism

text: pet sample

text: Canine coronavirus

text: Dog 38/22

characteristic: title


Dog 46/22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dog 46/22

characteristic: Submitter Id

text: University of Liverpool

text: not provided

text: Shirley Bonner

text: Faeces

text: United Kingdom

text: domestic

text: Dog

text: domestic:semi-enclosed housing

text: diseased

text: Canis lupus familiaris

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: faeces

text: Veterinary practice

text: Canine coronavirus

text: pet sample

text: Canine coronavirus

text: Dog 46/22


Dog 59/22

text: UNIVERSITY OF LIVERPOOL

text: public

text: Dog 59/22

text: University of Liverpool

characteristic: collecting institution

characteristic: collection date

text: Shirley Bonner

characteristic: collector name

text: Faeces

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: domestic

characteristic: host behaviour

text: Dog

characteristic: host common name

text: domestic:semi-enclosed housing

characteristic: host habitat

text: diseased

characteristic: host health state

text: Canis lupus familiaris

text: female

text: faeces

characteristic: isolation source host-associated

text: Veterinary practice

characteristic: isolation source non-host-associated

text: Canine coronavirus

text: pet sample

characteristic: sample capture status

text: Canine coronavirus

text: Dog 59/22


Dog 61/22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Dog 61/22

characteristic: Submitter Id

text: University of Liverpool

text: Shirley Bonner

text: Faeces

text: United Kingdom

text: domestic

text: Dog

text: domestic:semi-enclosed housing

text: diseased

text: Canis lupus familiaris

characteristic: host scientific name

text: not collected

text: faeces

text: Veterinary practice

text: Canine coronavirus

characteristic: organism

text: pet sample

text: Canine coronavirus

text: Dog 61/22

characteristic: title


Dog 62/22

text: UNIVERSITY OF LIVERPOOL

text: public

text: Dog 62/22

text: University of Liverpool

characteristic: collecting institution

characteristic: collection date

text: Shirley Bonner

characteristic: collector name

text: Faeces

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: domestic

characteristic: host behaviour

text: Dog

characteristic: host common name

text: domestic:semi-enclosed housing

characteristic: host habitat

text: diseased

characteristic: host health state

text: Canis lupus familiaris

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: faeces

text: Veterinary practice

text: Canine coronavirus

text: pet sample

text: Canine coronavirus

text: Dog 62/22


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Uppsala University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Uppsala University

characteristic: Submitter Id

text: dog

characteristic: common name

text: Sweden

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

characteristic: sex

text: blood

text: Labrador_retriever_Canine_Atopic_Dermatitis_control_ID1


text: Uppsala University

text: public

text: dog

characteristic: description

text: Sweden

characteristic: geographic location (region and locality)

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Female

text: blood

text: Labrador_retriever_Canine_Atopic_Dermatitis_control_ID2

characteristic: title


text: Uppsala University

text: public

text: dog

text: Sweden

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

text: blood

text: Labrador_retriever_Canine_Atopic_Dermatitis_case_ID3


text: Uppsala University

text: public

text: dog

text: Sweden

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

text: blood

text: Labrador_retriever_Canine_Atopic_Dermatitis_case_ID4


E-MTAB-12122:Sample 1

text: UoH

text: public

text: E-MTAB-12122:Sample 1

text: 3 to 9

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: intestinal crypt stem cell of small intestine

text: house mouse

text: Protocols: Mouse small intestines were flushed with cold PBS, opened and mucus was removed. Intestine was cut to small fragments and incubated with several changes of 10 mM EDTA in PBS on ice for 2 h. Epithelium was detached by vigorous shaking. To enrich crypts, tissue suspension was filtered through 70 μm nylon mesh. Enriched crypts were washed once with cold PBS and plated into 60% Matrigel (BD Biosciences) with ENR media. 10 μM Y-27632 was added to the media for the first 2 days. To isolate single cells, isolated crypts were dissociated in TrypLE Express (Gibco) with 1000 U/ml of DNaseI (Roche) +32 °C for 90 seconds. Cells were washed and stained with antibodies anti-CD31-PE (Biolegend, Mec13.3), anti-CD45-PE (eBioscience, 30-F11), anti-Ter119-PE (Biolegend, Ter119), anti-EpCAM-APC (eBioscience, G8.8) and anti-CD24-Pacific Blue (Biolegend, M1/69). Finally, cells were resuspended to SMEM media (Sigma) supplemented with 7-AAD (Life) for live cell separation. Cells were sorted by using FACSAria II or FACSAria Fusion (BD Biosciences). Total RNA from sorted cells were isolated by Trizol purification. Samples were first treated with HL-dsDNAse (ArticzymesP/N 80200-050) to remove residual DNA. An Ovation Universal RNA-Seq System kit was used for Illumina library preparations (NuGEN Technologies Inc., CA, USA). Purified total RNA (100 ng) was used and primers for ribosomal removal were designed and used as outlined in the kit manual. Libraries were purified with AMPure XP beads (Beckman Coulter Inc., MA, USA),

text: young

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: strain

text: Sample 1


E-MTAB-12122:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12122:Sample 10

text: < 24

text: ArrayExpress

text: transit amplifying cell of small intestine

text: house mouse

text: old

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

text: Sample 10


E-MTAB-12122:Sample 11

text: UoH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12122:Sample 11

characteristic: Submitter Id

text: < 24

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: old

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

characteristic: sex

text: Sample 11


E-MTAB-12122:Sample 12

text: UoH

text: public

text: E-MTAB-12122:Sample 12

text: < 24

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: old

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

text: Sample 12

characteristic: title


E-MTAB-12122:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UoH

text: public

text: E-MTAB-12122:Sample 2

text: 3 to 9

text: ArrayExpress

text: house mouse

text: young

characteristic: individual

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: strain

text: Sample 2


E-MTAB-12122:Sample 3

characteristic: External Id

text: UoH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12122:Sample 3

text: 3 to 9

text: ArrayExpress

text: house mouse

text: young

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

text: Sample 3


E-MTAB-12122:Sample 4

text: UoH

text: public

text: E-MTAB-12122:Sample 4

characteristic: Submitter Id

text: 3 to 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: young

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

characteristic: sex

text: Sample 4


E-MTAB-12122:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UoH

text: public

text: E-MTAB-12122:Sample 5

text: 3 to 9

text: ArrayExpress

text: house mouse

text: young

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

text: Sample 5

characteristic: title


E-MTAB-12122:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UoH

characteristic: INSDC center name

text: public

text: E-MTAB-12122:Sample 6

text: 3 to 9

text: ArrayExpress

text: house mouse

text: young

characteristic: individual

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

characteristic: organism part

text: Mus musculus

text: female

characteristic: strain

text: Sample 6


E-MTAB-12122:Sample 7

text: UoH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12122:Sample 7

characteristic: Submitter Id

text: < 24

characteristic: age

text: ArrayExpress

text: house mouse

text: old

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

text: Sample 7


E-MTAB-12122:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UoH

text: public

text: E-MTAB-12122:Sample 8

text: < 24

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: old

text: Mus musculus

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

characteristic: sex

text: Sample 8


E-MTAB-12122:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UoH

text: public

text: E-MTAB-12122:Sample 9

text: < 24

text: ArrayExpress

text: house mouse

text: old

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epithelium of small intestine

text: Mus musculus

text: female

text: Sample 9

characteristic: title


E-MTAB-12119:Sample 1

text: National Taiwan University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: control shRNA

characteristic: RNA interference

text: E-MTAB-12119:Sample 1

tag: Namespace:National Taiwan University Hospital

unit: year

text: ArrayExpress

text: germ cell

text: human

text: Protocols: NTERA2/D1 (NT2/D1) cell line was used in the experiment. shRNAs were transduced to NTERA2/D1 cells, targeting RFP as control and targeting SINHCAF as test, and selected by puromycin for 7 days. Cell pellettes are selected. Total RNA was extracted from cell lines using the Trizol reagent. 1.3 ug of total RNA was used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using SMARTER mRNA-Seq Library Prep Kit following manufacturer's protocols.

text: adult

text: testicular embryonal carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: testis

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 1


E-MTAB-12119:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: National Taiwan University Hospital

text: public

characteristic: INSDC status

text: SINHCAF shRNA 1

characteristic: SRA accession

text: E-MTAB-12119:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: germ cell

text: human

text: adult

text: testicular embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

text: Sample 2


E-MTAB-12119:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: National Taiwan University Hospital

text: public

text: SINHCAF shRNA 2

text: E-MTAB-12119:Sample 3

text: ArrayExpress

characteristic: broker name

text: germ cell

text: human

characteristic: common name

characteristic: description

text: adult

text: testicular embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male

characteristic: sex

text: Sample 3


text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:THE ROSLIN INSTITUTE

text: cattle

text: Overlapping paired reads

text: Bos taurus

characteristic: organism

text: Bos taurus

characteristic: title


text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

characteristic: INSDC last update

text: public

tag: Namespace:NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: Environmental sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: AREST project_mcr


characteristic: ENA-CHECKLIST

text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

text: Environmental sample

text: Escherichia coli

text: Escherichia coli

text: AREST project_mcr


characteristic: ENA-FIRST-PUBLIC

text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

text: Environmental sample

text: Enterobacter hormaechei

text: Enterobacter hormaechei

text: AREST project_mcr


text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

characteristic: INSDC status

text: Environmental sample

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: AREST project_mcr


text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

characteristic: SRA accession

text: Environmental sample

text: Enterobacter ludwigii

text: Enterobacter ludwigii

text: AREST project_mcr


text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

characteristic: Submitter Id

text: Environmental sample

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica

text: AREST project_mcr


text: public

tag: Namespace:INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH, BHOPAL

text: Leaves of adult Wild Jack tree

text: India

characteristic: geographic location (country and/or sea)

text: Weatern Ghats, Karnataka

characteristic: geographic location (region and locality)

text: Artocarpus hirsutus

text: Artocarpus hirsutus

text: Wild Jack


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: Kamil S. Jaron, Jacintha Ellers, Matty Berg

text: University of Edinburgh, Amsterdam Instistute for Life and Environment

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Scotland | Edinburgh | University of Edinburgh | Ashworth laboratories

text: cylindrical plaster cages with mossy wood pieces

characteristic: habitat

text: Kamil S. Jaron

text: University of Edinbrgh

text: adult

characteristic: lifestage

text: Allacma fusca

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Allacma fusca

text: MALE

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Graz University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Graz University of Technology

text: Rhizosphere

characteristic: common name

text: Rhizosphere metagenome

characteristic: description

text: rhizosphere metagenome

characteristic: organism

text: rhizosphere metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

characteristic: Submitter Id

text: golden spiny mouse

text: kidney rna-seq from individual AR01

text: Acomys russatus

text: Acomys russatus


text: EBI

text: public

text: golden spiny mouse

text: kidney rna-seq from individual AR02

text: Acomys russatus

text: Acomys russatus


text: EBI

text: public

text: golden spiny mouse

text: kidney rna-seq from individual AR03

text: Acomys russatus

text: Acomys russatus


text: EBI

text: public

text: golden spiny mouse

text: kidney rna-seq from individual AR04

text: Acomys russatus

text: Acomys russatus


text: EBI

text: public

text: golden spiny mouse

text: kidney rna-seq from individual AR05

text: Acomys russatus

text: Acomys russatus


text: EBI

text: public

text: kidney rna-seq from individual AC01

text: Acomys dimidiatus

text: Acomys dimidiatus


text: EBI

text: public

text: kidney rna-seq from individual AC02

text: Acomys dimidiatus

text: Acomys dimidiatus


text: EBI

text: public

text: kidney rna-seq from individual AC04

text: Acomys dimidiatus

text: Acomys dimidiatus


text: EBI

text: public

text: kidney rna-seq from individual AC05

text: Acomys dimidiatus

text: Acomys dimidiatus


text: EBI

text: public

text: kidney rna-seq from individual AC06

text: Acomys dimidiatus

text: Acomys dimidiatus


text: NATIONAL UNIVERSITY OF IRELAND, GALWAY

text: public

text: Human sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: AREST project_mcr


text: UNIVERSITY OF OSLO

text: public

tag: Namespace:UNIVERSITY OF OSLO

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT12 Sarctica_smallRNA_B12h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT18 Sarctica_smallRNA_B18h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT24 Sarctica_smallRNA_B24h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT30 Sarctica_smallRNA_B30h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT36 Sarctica_smallRNA_B36h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT42 Sarctica_smallRNA_B42h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT48 Sarctica_smallRNA_B48h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT54 Sarctica_smallRNA_B54h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT60 Sarctica_smallRNA_B60h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT66 Sarctica_smallRNA_B66h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_BT72 Sarctica_smallRNA_B72h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT0 Sarctica_smallRNA_C0h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT6 Sarctica_smallRNA_C6h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT12 Sarctica_smallRNA_C12h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT18 Sarctica_smallRNA_C18h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT24 Sarctica_smallRNA_C24h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT30 Sarctica_smallRNA_C30h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT36 Sarctica_smallRNA_C36h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT42 Sarctica_smallRNA_C42h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT48 Sarctica_smallRNA_C48h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT54 Sarctica_smallRNA_C54h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT60 Sarctica_smallRNA_C60h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT66 Sarctica_smallRNA_C66h


text: UNIVERSITY OF OSLO

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Sarctica_CT72 Sarctica_smallRNA_C72h


text: University of Western Ontario

text: public

tag: Namespace:University of Western Ontario

text: Suncor

text: Spent granulated activated carbon

text: Yes

text: Canada

characteristic: geographic location (country and/or sea)

text: Ontario, Sarnia

characteristic: geographic location (region and locality)

text: Carbon bed filter

text: activated carbon metagenome

text: activated carbon metagenome

type: derived-from


text: UNIVERSIDADE DE SAO PAULO

text: public

tag: Namespace:UNIVERSIDADE DE SAO PAULO

characteristic: collection date

text: Bacterial_community _in _an_ethanol _plant

text: fementation distillery

characteristic: environmental medium

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: ethanol fermentation

characteristic: local environmental context

text: fermentation metagenome

text: BACTERIAL COMPOSITION OF A FIRSTGENERATION ETHANOL DISTILLERY

characteristic: project name

text: fermentation metagenome

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Western Ontario

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Suncor

text: Flocculant

text: Yes

text: Canada

text: Ontario, Sarnia

text: Carbon bed filter

text: activated sludge metagenome

text: activated sludge metagenome


name: E-MTAB-12053:Imm. Primary + LACTB DAY 0_1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOCB Prague

text: public

tag: Namespace:IOCB Prague

characteristic: Submitter Id

text: over 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: ovarian epithelial cell

text: human

characteristic: common name

text: Protocols: The primary and PEO4 cells were purchased. Primary (Cell biologics H-6036) andPEO4 (Sigma Aldrich 10032309-1VL) All cells were cultured in 5% CO2 humidified incubator at 37 °C. To activate the tetracycline-inducible gene expression, the cells were treated with 1 μg/ml DOX hyclate (Sigma-Aldrich) in medium. Fresh DOX was added every 3 days. PEO4 and PRIMARY were cultivated with RPMI 10%FBS and 1% P/S. The Primary cells were immortalized in our laboratory through the addition of hTERT. Immortalization protocol: 1. Plate the target cells in one 10cm plate of 1x106 cells. 2. The next day, infect the target cells with hTERT virus. 24h incubation at 37˚C 3. After 48 hours incubation, start the selection with HYGRO. Total RNA was isolated with GenElute™ Total RNA Purification Kit (RNB100-100RXN) and subjected to RNA-sequencing core facility at Biocev, Institute of Molecular Genetics, Czech Republic. Total RNA was isolated with GenElute™ Total RNA Purification Kit (RNB100-100RXN) and subjected to RNA-sequencing core facility at Biocev, Institute of Molecular Genetics, Czech Republic. For the results analysis the read quality was assessed using FastQC 0.11.8 (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/). Adapters and low-quality sequences were removed using Trimmomatic 0.39 (DOI 10.1093/bioinformatics/btu170). Clean reads were then mapped into the hg38 human genome using HISAT 2.1.0 (DOI 10.1038/s41587-019-0201-4) and Samtools 1.10 (DOI: 10.1093/gigascience/giab008). Read coverage profiles were then computed using the bamCoverage tool from the deepTools 3.5.1 package (DOI 10.1093/nar/gkw257). Mapped reads and coverage data were inspected visually in the IGV 2.9 browser (DOI 10.1038/nbt.1754). Differentially expressed genes were detected using the DESeq2 package (DOI 10.1186/s13059-014-0550-8) in R/Bioconductor (DOI 10.1186/gb-2004-5-10-r80; DOI 10.1038/nmeth.3252). All scripts and code are available from GitHub at https://github.com/mprevorovsky/keckesova-LACTB. Heatmap was generated from the output of DESeq2 analysis performed on the RNA-seq data, with genes considered statistically significant (P < 0.05). Z-scores were computed from the normalized gene counts.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: LACTB +/+; TetO hTERT

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ovary

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Imm. Primary + LACTB DAY 0_1

characteristic: title


name: E-MTAB-12053:Imm. Primary + LACTB DAY 0_2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IOCB Prague

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: over 18

text: ArrayExpress

text: ovarian epithelial cell

text: human

text: adult

text: normal

text: LACTB +/+; TetO hTERT

text: Homo sapiens

text: Homo sapiens

text: ovary

text: Homo sapiens

text: female

text: Imm. Primary + LACTB DAY 0_2


E-MTAB-12053:PEO4 + LACTB DAY 0_1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOCB Prague

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12053:PEO4 + LACTB DAY 0_1

characteristic: Submitter Id

text: over 18

text: ArrayExpress

text: human

text: adult

text: ovarian adenocarcinoma

text: LACTB +/+; TetO

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

characteristic: sampling site

text: Homo sapiens

text: female

text: PEO4 + LACTB DAY 0_1


E-MTAB-12053:PEO4 + LACTB DAY 0_2

text: IOCB Prague

text: public

text: E-MTAB-12053:PEO4 + LACTB DAY 0_2

text: over 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: ovarian adenocarcinoma

characteristic: disease

text: LACTB +/+; TetO

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

text: Homo sapiens

text: female

text: PEO4 + LACTB DAY 0_2


name: E-MTAB-12053:Imm. Primary + DOX DAY 10_1

characteristic: ENA-CHECKLIST

text: IOCB Prague

text: public

text: over 18

text: ArrayExpress

text: ovarian epithelial cell

text: human

text: adult

text: normal

text: TetO; hTERT LACTB -/-

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ovary

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Imm. Primary + DOX DAY 10_1

characteristic: title


name: E-MTAB-12053:Imm. Primary + DOX DAY 10_2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOCB Prague

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: over 18

text: ArrayExpress

text: ovarian epithelial cell

text: human

text: adult

text: normal

text: TetO; hTERT LACTB -/-

text: Homo sapiens

text: Homo sapiens

text: ovary

text: Homo sapiens

text: female

text: Imm. Primary + DOX DAY 10_2


name: E-MTAB-12053:Imm. Primary + LACTB DAY 10_1

text: IOCB Prague

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: over 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: ovarian epithelial cell

text: human

text: adult

text: normal

text: LACTB +/+; TetO hTERT

text: Homo sapiens

text: Homo sapiens

text: ovary

text: Homo sapiens

text: female

text: Imm. Primary + LACTB DAY 10_1


name: E-MTAB-12053:Imm. Primary + LACTB DAY 10_2

characteristic: ENA-CHECKLIST

text: IOCB Prague

text: public

text: over 18

text: ArrayExpress

text: ovarian epithelial cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: LACTB +/+; TetO hTERT

text: Homo sapiens

text: Homo sapiens

text: ovary

text: Homo sapiens

text: female

text: Imm. Primary + LACTB DAY 10_2


name: E-MTAB-12053:Imm. Primary + LACTB DAY 6_1

text: IOCB Prague

text: public

text: over 18

text: ArrayExpress

text: ovarian epithelial cell

text: human

text: adult

text: normal

text: LACTB +/+; TetO hTERT

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ovary

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Imm. Primary + LACTB DAY 6_1

characteristic: title


name: E-MTAB-12053:Imm. Primary + LACTB DAY 6_2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOCB Prague

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: over 18

text: ArrayExpress

text: ovarian epithelial cell

text: human

text: adult

text: normal

text: LACTB +/+; TetO hTERT

text: Homo sapiens

text: Homo sapiens

text: ovary

text: Homo sapiens

text: female

text: Imm. Primary + LACTB DAY 6_2


E-MTAB-12053:PEO4 + DOX DAY 6_1

text: IOCB Prague

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12053:PEO4 + DOX DAY 6_1

characteristic: Submitter Id

text: over 18

characteristic: age

text: ArrayExpress

text: human

text: adult

text: ovarian adenocarcinoma

text: TetO; hTERT LACTB -/-

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

characteristic: sampling site

text: Homo sapiens

text: female

text: PEO4 + DOX DAY 6_1


E-MTAB-12053:PEO4 + LACTB DAY 3_1

characteristic: ENA-CHECKLIST

text: IOCB Prague

text: public

text: E-MTAB-12053:PEO4 + LACTB DAY 3_1

text: over 18

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: ovarian adenocarcinoma

characteristic: disease

text: LACTB +/+; TetO

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

text: Homo sapiens

text: female

text: PEO4 + LACTB DAY 3_1


E-MTAB-12053:PEO4 + LACTB DAY 3_2

characteristic: ENA-FIRST-PUBLIC

text: IOCB Prague

text: public

text: E-MTAB-12053:PEO4 + LACTB DAY 3_2

text: over 18

text: ArrayExpress

text: human

text: adult

text: ovarian adenocarcinoma

text: LACTB +/+; TetO

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ovary

characteristic: organism part

text: ascitic fluid

text: Homo sapiens

text: female

characteristic: sex

text: PEO4 + LACTB DAY 3_2

characteristic: title


E-MTAB-12053:PEO4 + LACTB DAY 6_1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOCB Prague

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12053:PEO4 + LACTB DAY 6_1

text: over 18

text: ArrayExpress

text: human

text: adult

text: ovarian adenocarcinoma

text: LACTB +/+; TetO

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

text: Homo sapiens

text: female

text: PEO4 + LACTB DAY 6_1


E-MTAB-12053:PEO4 + LACTB DAY 6_2

characteristic: ENA-CHECKLIST

text: IOCB Prague

text: public

characteristic: SRA accession

text: E-MTAB-12053:PEO4 + LACTB DAY 6_2

characteristic: Submitter Id

text: over 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: ovarian adenocarcinoma

text: LACTB +/+; TetO

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

characteristic: sampling site

text: Homo sapiens

text: female

text: PEO4 + LACTB DAY 6_2


E-MTAB-12053:PEO4 +DOX DAY 6_2

characteristic: ENA-FIRST-PUBLIC

text: IOCB Prague

text: public

text: E-MTAB-12053:PEO4 +DOX DAY 6_2

text: over 18

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: ovarian adenocarcinoma

characteristic: disease

text: TetO LACTB -/-

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: ovary

text: ascitic fluid

text: Homo sapiens

text: female

text: PEO4 +DOX DAY 6_2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: not provided

characteristic: collection date

text: Severely preterm infant

characteristic: environment (biome)

text: Gastrointestinal tract

characteristic: environment (feature)

text: negative control

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: clinical metagenome

characteristic: organism

text: SERVIS research Project

characteristic: project name

text: clinical metagenome

text: Illumina Sequencing by synthesis

characteristic: sequencing method

text: negative control

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Severely preterm infant

text: Gastrointestinal tract

text: Stool

text: United Kingdom

text: human-gut

text: metagenome

text: clinical metagenome

text: SERVIS research Project

text: clinical metagenome

text: Illumina Sequencing by synthesis

text: Preterm stool metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CSIRO

text: public

text: giant kelp

characteristic: common name

text: M. pyrifera specimen A1

characteristic: description

text: gametophyte

text: Australia

characteristic: geographic location (country and/or sea)

text: Tasmania

characteristic: geographic location (region and locality)

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera A1


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen A2

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

characteristic: organism

text: Macrocystis pyrifera

text: M. pyrifera A2


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen A3

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera A3


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen A4

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera A4


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen A5

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera A5


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen A6

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera A6


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen A7

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera A7


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B1

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B1


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B2

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B2


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B3

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B3


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B4

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B4


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B5

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B5


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B6

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B6


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B7

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B7


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen B8

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera B8


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C2

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C2


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C3

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C3


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C4

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C4


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C5

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C5


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C6

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C6


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C7

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C7


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen C8

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera C8


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen D1

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D1


text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: not provided

characteristic: collection date

text: Severely preterm infant

characteristic: environment (biome)

text: Gastrointestinal tract

characteristic: environment (feature)

text: Stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: clinical metagenome

text: SERVIS research Project

characteristic: project name

text: clinical metagenome

text: Illumina Sequencing by synthesis

characteristic: sequencing method

text: Preterm stool metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CSIRO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: giant kelp

text: M. pyrifera specimen D2

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D2

characteristic: title


characteristic: External Id

text: CSIRO

text: public

text: giant kelp

characteristic: common name

text: M. pyrifera specimen D3

characteristic: description

text: gametophyte

text: Australia

characteristic: geographic location (country and/or sea)

text: Tasmania

characteristic: geographic location (region and locality)

text: Macrocystis pyrifera

characteristic: organism

text: Macrocystis pyrifera

text: M. pyrifera D3


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen D4

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D4


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen D5

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D5


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen D6

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D6


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen D7

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D7


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen D8

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera D8


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E1

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E1


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E2

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E2


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E3

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E3


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E4

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E4


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E5

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E5


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E6

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E6


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E7

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E7


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen E8

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera E8


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen F3

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera F3


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen F4

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera F4


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen F5

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera F5


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen F6

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera F6


text: CSIRO

text: public

text: giant kelp

text: M. pyrifera specimen F7

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera F7


text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: not provided

characteristic: collection date

text: Severely preterm infant

characteristic: environment (biome)

text: Gastrointestinal tract

characteristic: environment (feature)

text: Stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: clinical metagenome

text: SERVIS research Project

characteristic: project name

text: clinical metagenome

text: Illumina Sequencing by synthesis

characteristic: sequencing method

text: Preterm stool metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CSIRO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: giant kelp

text: M. pyrifera specimen F8

text: gametophyte

text: Australia

text: Tasmania

text: Macrocystis pyrifera

text: Macrocystis pyrifera

text: M. pyrifera F8

characteristic: title


characteristic: External Id

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: DAVID BELL

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Peeblesshire | Talla & Gameshope Borders Forest Trust Reserve | Games Hope Burn nr March Sike

characteristic: geographic location (region and locality)

text: Section of wooded riverbank in open moorland valley. On exposed crags by river

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Marsupella emarginata

characteristic: organism

characteristic: organism part

text: DTOL

text: Marsupella emarginata

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: 507fdc81-aabb-4488-963d-54cb8b78829c-dtol

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gametophyte

text: Marsupella emarginata

text: DTOL

characteristic: project name

text: Marsupella emarginata

text: NOT COLLECTED

text: NOT PROVIDED

text: 4ff99de7-ebec-4ed2-ad6e-a1b6c5dbf28f-dtol


characteristic: External Id

text: EarlhamInstitute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Peeblesshire | Dawyck Botanic Garden | by path to Dawyck Chapel

characteristic: geographic location (region and locality)

text: Woodland garden. In lawn at base of Tsuga canadensis

text: gametophyte

text: Hylocomiadelphus triquetrus

text: DTOL

text: Hylocomiadelphus triquetrus

text: NOT COLLECTED

text: NOT PROVIDED

text: a35bc180-0491-4fb0-b6ad-a72a19e856aa-dtol

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Hylocomiadelphus triquetrus

characteristic: organism

characteristic: organism part

text: DTOL

text: Hylocomiadelphus triquetrus

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: 13a27fe2-0ade-4133-95fd-3a78c7665166-dtol

characteristic: tolid


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gametophyte

text: Rhytidiadelphus loreus

text: DTOL

characteristic: project name

text: Rhytidiadelphus loreus

text: NOT COLLECTED

text: NOT PROVIDED

text: 57c81c60-9aaf-48f5-bf6f-4f18e59da677-dtol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: gametophyte

text: Rhytidiadelphus loreus

text: DTOL

text: Rhytidiadelphus loreus

text: NOT COLLECTED

text: NOT PROVIDED

text: f700cb2b-68a4-40ce-92dd-56c3ef146098-dtol

characteristic: title


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Peeblesshire | Dawyck Botanic Garden | by track behind Dawyck Chapel

text: Woodland garden. Edge of gravel track in shade of beech trees

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Vinealobryum insulanum

characteristic: organism

characteristic: organism part

text: DTOL

text: Vinealobryum insulanum

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: fe3fc4d7-e35b-45c7-86f9-c4c6372c1a5c-dtol

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gametophyte

text: Vinealobryum insulanum

text: DTOL

characteristic: project name

text: Vinealobryum insulanum

text: NOT COLLECTED

text: NOT PROVIDED

text: 1b553c25-e512-4a76-bbe4-2b2610db43f0-dtol


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Woodland garden. On rotting logs

text: gametophyte

text: Hypnum andoi

text: DTOL

text: Hypnum andoi

text: NOT COLLECTED

text: NOT PROVIDED

text: fc4c57d0-dc8f-4d3a-aa04-0feea2def05e-dtol

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Peeblesshire | Dawyck Botanic Garden | by track behind Dawyck Chape

text: Woodland garden. On rotting logs

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Hypnum cupressiforme

characteristic: organism

characteristic: organism part

text: DTOL

text: Hypnum cupressiforme

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: 0dc50334-e255-4fbf-8b08-bd25702caa5b-dtol

characteristic: tolid


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Woodland garden. On rotting logs

text: gametophyte

text: Hypnum cupressiforme

text: DTOL

characteristic: project name

text: Hypnum cupressiforme

text: NOT COLLECTED

text: NOT PROVIDED

text: ee7657d3-7671-48de-9eb3-d15f93e0113a-dtol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Woodland garden. On rotting stump with Lophocolea bidentata

text: gametophyte

text: Riccardia palmata

text: DTOL

text: Riccardia palmata

text: NOT COLLECTED

text: NOT PROVIDED

text: c59d6a94-733b-40da-bf8a-6702c7901e32-dtol

characteristic: title


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Riccardia palmata

characteristic: organism

characteristic: organism part

text: DTOL

text: Riccardia palmata

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: 7ed372fc-1a57-4eab-bde4-4446e32eac72-dtol

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Peeblesshire | Dawyck Botanic Garden | Upper Scrape Glen on path above Scrape Burn

text: Woodland garden. On mossy wall by path

text: gametophyte

text: Thuidium tamariscinum

text: DTOL

characteristic: project name

text: Thuidium tamariscinum

text: NOT COLLECTED

text: NOT PROVIDED

text: ac01d20e-1bf0-4fd8-be12-8a91581f1ed0-dtol


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Woodland garden. On mossy wall by path

text: gametophyte

text: Thuidium tamariscinum

text: DTOL

text: Thuidium tamariscinum

text: NOT COLLECTED

text: NOT PROVIDED

text: 4f82faf4-d115-42ff-9725-eeeec3b3dd53-dtol

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Woodland garden. On mossy wall in shade of yew

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Porella cordaeana

characteristic: organism

characteristic: organism part

text: DTOL

text: Porella cordaeana

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: d68cf74d-1cff-49f3-94c0-eef6cfd89deb-dtol

characteristic: tolid


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gametophyte

text: Porella cordaeana

text: DTOL

characteristic: project name

text: Porella cordaeana

text: NOT COLLECTED

text: NOT PROVIDED

text: b70bebe5-63b3-4a8d-b8e3-1fc367ef4bd6-dtol


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Peeblesshire | Dawyck Botanic Garden | Scrape Burn

characteristic: geographic location (region and locality)

text: Woodland garden. On stems of streamside Hydrangea

text: gametophyte

text: Neckera pumila

text: DTOL

text: Neckera pumila

text: NOT COLLECTED

text: NOT PROVIDED

text: f9cab0c5-b7bb-4ee4-90f5-815f797df443-dtol

characteristic: title


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Woodland garden. On stems of streamside Hydrangea<

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Neckera pumila

characteristic: organism

characteristic: organism part

text: DTOL

text: Neckera pumila

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: 5708a568-c68a-4588-bdbe-1ee4c47d0ba0-dtol

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Peeblesshire | Dawyck Botanic Garden | Cryptogamic Sanctuary

text: Woodland garden. On base of oak trunk

text: gametophyte

text: Isothecium myosuroides

text: DTOL

characteristic: project name

text: Isothecium myosuroides

text: NOT COLLECTED

text: NOT PROVIDED

text: c073a9d7-31c5-4858-89b6-11b811e0d1da-dtol


characteristic: External Id

text: EarlhamInstitute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: NOT_ PROVIDED

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (region and locality)

text: Woodland garden. On base of oak trunk

text: gametophyte

text: Isothecium myosuroides

text: DTOL

text: Isothecium myosuroides

text: NOT COLLECTED

text: NOT PROVIDED

text: 50c5845b-30b3-4b78-93d5-58faf061b202-dtol

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EarlhamInstitute

characteristic: INSDC center name

text: public

text: COPO

text: DAVID BELL | LIZ KUNGU

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Woodland garden. On base of oak trunk

characteristic: habitat

text: gametophyte

characteristic: lifestage

text: Isothecium alopecuroides

characteristic: organism

characteristic: organism part

text: DTOL

text: Isothecium alopecuroides

text: NOT COLLECTED

characteristic: sex

text: NOT PROVIDED

text: b6d19f70-575f-4a35-9b82-5ec1b9831bda-dtol

characteristic: tolid


characteristic: External Id

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Severely preterm infant

characteristic: environment (biome)

text: Gastrointestinal tract

characteristic: environment (feature)

text: Stool

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: clinical metagenome

text: SERVIS research Project

characteristic: project name

text: clinical metagenome

text: Illumina Sequencing by synthesis

characteristic: sequencing method

text: Preterm stool metagenome


MockExtracteda

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

characteristic: INSDC center name

text: public

text: MockExtracteda

text: not provided

characteristic: collection date

text: Severely preterm infant

text: Gastrointestinal tract

text: positive control

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: clinical metagenome

characteristic: organism

text: SERVIS research Project

text: clinical metagenome

text: Illumina Sequencing by synthesis

text: positive control

characteristic: title


MockExtractedb

characteristic: External Id

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MockExtractedb

characteristic: Submitter Id

text: not provided

text: Severely preterm infant

characteristic: environment (biome)

text: Gastrointestinal tract

text: positive control

text: United Kingdom

text: human-gut

text: metagenome

text: clinical metagenome

text: SERVIS research Project

text: clinical metagenome

text: Illumina Sequencing by synthesis

text: positive control


Mock-Extracted-B

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: Mock-Extracted-B

text: not provided

text: Severely preterm infant

text: Gastrointestinal tract

characteristic: environment (feature)

text: positive control

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: clinical metagenome

text: SERVIS research Project

characteristic: project name

text: clinical metagenome

text: Illumina Sequencing by synthesis

text: positive control


Mock-DNA-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

characteristic: INSDC center name

text: public

text: Mock-DNA-C

text: not provided

characteristic: collection date

text: Severely preterm infant

text: Gastrointestinal tract

text: positive control

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: clinical metagenome

text: SERVIS research Project

text: clinical metagenome

text: Illumina Sequencing by synthesis

characteristic: sequencing method

text: positive control


characteristic: External Id

text: University of Waterloo

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Waterloo

unit: m

characteristic: altitude

characteristic: depth

text: No template control, out of plate

characteristic: description

text: Canada

text: metagenome

characteristic: organism

text: Biogeographic 16S rRNA gene survey of the Grand River

text: metagenome

text: Illumina sequencing

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Waterloo

text: public

characteristic: Submitter Id

text: Positive control, out of plate

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: project name

text: metagenome

text: Illumina sequencing

text: 16S rRNA gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

text: public

characteristic: collection date

text: No template control, in plate

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene


text: University of Waterloo

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: altitude

unit: µmol/L

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

unit: mg/L

characteristic: chloride

unit: mS/cm

characteristic: conductivity

characteristic: depth

text: Grand River, Site 1, Low flow, Before sunrise

characteristic: dissolved carbon dioxide

unit: µg/L

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

unit: µmol/kg

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

unit: ºC

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 1, Low flow, Near solar noon

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 1, Low flow, Mid-morning

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 1, High flow

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 2, Low flow, Before sunrise

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 2, Low flow, Near solar noon

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 2, High flow

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 3, Low flow, Before sunrise

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 3, Low flow, Near solar noon

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 3, High flow

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 4, Low flow, Before sunrise

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 4, Low flow, Near solar noon

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 4, Low flow, Mid-morning

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 4, High flow

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 5, Low flow, Before sunrise

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 5, Low flow, Near solar noon

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, SIte 5, High flow

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 6, Low flow, Before sunrise

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand River, Site 6, Low flow, Near solar noon

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 6, High flow

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: freshwater river biome

characteristic: conductivity

characteristic: depth

text: Grand RIver, Site 7, Low flow, Before sunrise

characteristic: dissolved carbon dioxide

characteristic: dissolved inorganic carbon

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: water

characteristic: environmental medium

text: Canada

text: freshwater river

characteristic: local environmental context

characteristic: nitrate

characteristic: nitrite

text: metagenome

characteristic: pH

text: metagenome

text: Illumina sequencing

characteristic: soluble reactive phosphorus

characteristic: sulfate

text: 16S rRNA gene

characteristic: temperature

characteristic: total nitrogen

characteristic: total phosphorus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Waterloo

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

characteristic: ammonium

text: freshwater river biome

characteristic: broad-scale environmental context

characteristic: chloride

characteristic: collection date

text: Grand River, Site 7, Low flow, Near solar noon

characteristic: description

text: water

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

characteristic: title