characteristic: ENA-CHECKLIST

text: University of British Columbia

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: WILLIAM LEWIS

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: original collection date

text: United Kingdom | Dorset | Wareham | East Stoke | East Stoke Fen Nature Reserve

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

text: A pole-mounted beaker was used to collect aquatic sediment from a freshwater pond

characteristic: sample collection device or method

characteristic: sample derived from

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 2ac0e3e1-bedf-4159-91d3-372b07fc39c8-asg


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: WILLIAM LEWIS

text: Department of Biochemistry, University of Cambridge, Cambridge, UK

text: United Kingdom

unit: DD

text: Cambridge | University of Cambridge | Department of Biochemistry | Hopkins Building

text: Anoxic culture flask

characteristic: habitat

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Bournemouth University, Bournemouth, United Kingdom | Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom

text: Cyclidium porcatum

characteristic: organism

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: organism part

text: ASG

text: NOT PROVIDED

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

text: de0e95fd-ef25-409f-bb29-c2bea7860bfc-asg

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

text: University of British Columbia

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: WILLIAM LEWIS

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 0ee4568f-7ff6-464e-bdd9-4dedf40f78d1-asg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: WILLIAM LEWIS

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

characteristic: organism

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: organism part

text: ASG

text: NOT PROVIDED

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

text: 8097aea0-b3d5-40d2-b1e5-c36b1c12310b-asg

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

text: University of British Columbia

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: WILLIAM LEWIS

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

characteristic: symbiont

text: 7a34581d-e891-42f7-9b70-cd0035b809ea-asg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: WILLIAM LEWIS

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

characteristic: organism

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: organism part

text: ASG

text: NOT PROVIDED

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

text: 6cfe0e04-12f9-453f-ac18-13a7a48d262e-asg

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

text: University of British Columbia

text: EarlhamInstitute

text: public

text: NOT PROVIDED

text: COPO

characteristic: broker name

text: WILLIAM LEWIS

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: Anoxic culture flask

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: original collection date

characteristic: original collection location

characteristic: original geographic location (latitude)

characteristic: original geographic location (longitude)

text: ASG

characteristic: project name

text: NOT PROVIDED

characteristic: proxy voucher

characteristic: sample collection device or method

characteristic: sample derived from

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

characteristic: symbiont

text: f5a2f9ff-4eeb-4ca2-95a3-580a4aa4e899-asg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of British Columbia

characteristic: GAL

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: COPO

text: WILLIAM LEWIS

text: United Kingdom

text: Anoxic culture flask

characteristic: habitat

text: GENOVEVA ESTEBAN | WILLIAM LEWIS

text: Cyclidium porcatum

characteristic: organism

text: UNICELLULAR ORGANISMS IN CULTURE

characteristic: organism part

text: ASG

text: NOT PROVIDED

text: Cyclidium porcatum

text: NOT PROVIDED

text: N

text: afda327a-3302-4083-ac21-dc1b30eb0e27-asg

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

text: Institute of Microbiology, ETH Zurich

text: public

tag: Namespace:Institute of Microbiology, ETH Zurich

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- _cps1-8 ::pNBU2-catermG-mCherryWITS21

characteristic: description

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Microbiology, ETH Zurich

text: public

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- _cps1-8 ::pNBU2-catermG-mCherryWITS19

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


characteristic: External Id

text: Institute of Microbiology, ETH Zurich

text: public

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- _cps1-8 ::pNBU2-catermG-mCherryWITS17

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

characteristic: INSDC center name

text: public

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

characteristic: INSDC first public

text: public

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- _cps1-8 ::pNBU2-catermG-GFPWITS11

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

characteristic: INSDC last update

text: public

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- _cps1-8 ::pNBU2-catermG-GFPWITS2

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

characteristic: INSDC status

text: Acapsular strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- _cps1-8 ::pNBU2-catermG-GFPWITS1

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

characteristic: SRA accession

text: Untagged strain. Acapsular strain with fluorescent insert; tetracycline resistant. tdk- _cps1-8 ::pNBU2-blatetQb

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482

text: BT-ACAP-TET


text: Institute of Microbiology, ETH Zurich

text: public

characteristic: Submitter Id

text: Wild type CPS strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- :: pNBU2- cat-ermGmCherry-WITS21

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: Wild type CPS strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- :: pNBU2- cat-ermGmCherry-WITS19

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: Wild type CPS strain with isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- :: pNBU2- cat-ermGmCherry-WITS17

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: Wild type CPS strain with isogenic tag insert; fluorescent tag; erythromycin resistant.

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: B.theta WT strain isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- :: pNBU2-cat-ermG-GFPWITS-11

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: B.theta WT strain isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- :: pNBU2-cat-ermG-GFP-WITS2

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: B.theta WT strain isogenic tag insert; fluorescent tag; erythromycin resistant. tdk- :: pNBU2-cat-ermG-GFP-WITS1

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482


text: Institute of Microbiology, ETH Zurich

text: public

text: Untagged strain. Wild type strain with fluorescent insert; tetracycline resistant. tdk- :: pNBU2-bla-tetQb

text: Bacteroides thetaiotaomicron VPI-5482

text: Bacteroides thetaiotaomicron VPI-5482

text: BT-WT-TET


text: Institute of Microbiology, ETH Zurich

text: public

text: mouse gut metagenome

text: mouse gut metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: metagenome

text: metagenome


text: Institute of Microbiology, ETH Zurich

text: public

text: blank sample

text: blank sample


text: Portugal

characteristic: Country

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: Mycobacteroides abscessus subsp. bolletii


text: Portugal

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public


text: public

tag: Namespace:Institute of Applied Biosciences, Centre for research and Technology Hellas

text: human

characteristic: common name

text: CLL Subset #201

text: Greece

characteristic: geographic location (country and/or sea)

text: Homo Sapiens

characteristic: host scientific name

text: Homo sapiens

text: Homo sapiens

text: peripheral blood


text: Institute of Applied Biosciences, Centre for research and Technology Hellas

text: public

text: human

text: CLL Subset #201

text: Greece

text: Homo Sapiens

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: peripheral blood

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Antwerp

text: public

tag: Namespace:University of Antwerp

text: South Africa

text: diseased

characteristic: host health state

text: Homo sapiens

text: Mtb

characteristic: isolate

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mtb clinical isolates


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Antwerp

text: public

text: South Africa

text: diseased

text: Homo sapiens

text: Mtb

text: Sputum

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mtb clinical isolates


characteristic: External Id

text: NIPH

characteristic: INSDC center name

text: public

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

text: Homo sapiens

text: blood

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: ROBERT KOCH INSTITUT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: collection date

text: isolate obtained from a human listeriosis case in Germany

text: Germany

text: diseased

text: Homo sapiens

text: human listeriosis

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVb

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


text: SC

text: public

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

characteristic: description

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Dr. Risch

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Liechtenstein

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-1124R14859/2022

characteristic: organism

characteristic: sample capture status

text: active surveillance not initiated by an outbreak

characteristic: title


text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: SG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1116R14817/2022

characteristic: isolate

text: other


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1125R14877/2022


text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-Risch-1122R14843/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: SG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1121R14892/2022

characteristic: isolate


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1123R14842/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1119R14880/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1123R14839/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1123R14845/2022


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1121R14851/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1125R14869/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1124R14833/2022

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

text: SG

text: Human

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text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1124R14846/2022


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

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text: public

characteristic: SRA accession

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text: SIB

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-Risch-1116R14878/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Dr. Risch

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: FR

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/FR-Risch-1121R14810/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

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characteristic: GISAID Accession ID

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text: SIB

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characteristic: geographic location (region and locality)

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text: restricted access

text: Homo sapiens

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text: restricted access

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text: restricted access

text: hCoV-19/Switzerland/ZH-Risch-1122R14884/2022

text: active surveillance in response to outbreak


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text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

text: FR

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/FR-Risch-1122R14809/2022

characteristic: organism

text: other

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characteristic: title


characteristic: GISAID Accession ID

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characteristic: INSDC center name

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text: SIB

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text: hCoV-19/Liechtenstein/FL-Risch-1121R14866/2022

characteristic: isolate

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characteristic: ENA-CHECKLIST

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characteristic: geographic location (country and/or sea)

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text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1124R14844/2022


characteristic: GISAID Accession ID

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text: SIB

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text: VD

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text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-Risch-1117R14813/2022

characteristic: organism

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text: restricted access

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text: hCoV-19/Switzerland/BE-Risch-1125R14872/2022

characteristic: isolate


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text: Homo sapiens

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text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1124R14829/2022


characteristic: ENA-CHECKLIST

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text: Dr. Risch

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text: Switzerland

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text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1114R14883/2022

characteristic: organism

characteristic: sample capture status

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characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

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text: public

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characteristic: broker name

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text: Liechtenstein

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1122R14860/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

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characteristic: External Id

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characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GR

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/GR-Risch-1121R14840/2022


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

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text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

text: Switzerland

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/AG-Risch-1124R14827/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: AG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1116R14818/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: other


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1118R14803/2022

text: other

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1126R14873/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: AG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1121R14888/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: INSDC status

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1126R14856/2022

text: active surveillance not initiated by an outbreak


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1125R14875/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1126R14857/2022

characteristic: isolate


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GR

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/GR-Risch-1125R14868/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

text: Switzerland

text: SO

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SO-Risch-1124R14830/2022

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: JU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/JU-Risch-1121R14853/2022

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1122R14848/2022


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1115R14807/2022

characteristic: organism

text: other

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: SG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1123R14838/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1125R14828/2022

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753901 of study SRP307210.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Parabacteroides merdae

characteristic: organism

text: Two consortia of human commensal bacteria, rationally designed around functionalities that are underrepresented in the gut microbiome of IBD patients, robustly corrected colitis-related microbial dysbiosis, dysregulated metabolism and treated T cell-mediated colitis.

characteristic: project name

characteristic: sample derived from

text: Parabacteroides merdae

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides merdae

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753901_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Bacteroides sp.

text: uncultured Bacteroides sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides vulgatus

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753901_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753907 of study SRP307210.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Alistipes putredinis

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Alistipes putredinis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753907_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Bifidobacterium longum

text: Bifidobacterium longum

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753907_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753913 of study SRP307210.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Faecalibacterium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Faecalibacterium sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753913_bin.4_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753914 of study SRP307210.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Collinsella sp.

text: uncultured Collinsella sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753914_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: not provided

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753915 of study SRP307210.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Phascolarctobacterium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Phascolarctobacterium sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753915_bin.15_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Akkermansia muciniphila

text: Two consortia of human commensal bacteria, rationally designed around functionalities that are underrepresented in the gut microbiome of IBD patients, robustly corrected colitis-related microbial dysbiosis, dysregulated metabolism and treated T cell-mediated colitis.

text: Akkermansia muciniphila

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753915_bin.16_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Anaerotruncus colihominis

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Anaerotruncus colihominis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Anaerotruncus;s__Anaerotruncus colihominis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753915_bin.6_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Escherichia coli

text: Escherichia coli

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753915_bin.8_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753917 of study SRP307210.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides uniformis

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Bacteroides uniformis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753917_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Bacteroides ovatus

text: Bacteroides ovatus

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides ovatus

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753917_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753917_bin.7_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753918 of study SRP307210.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Firmicutes bacterium

text: uncultured Firmicutes bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753918_bin.1_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Blautia sp.

characteristic: organism

text: Two consortia of human commensal bacteria, rationally designed around functionalities that are underrepresented in the gut microbiome of IBD patients, robustly corrected colitis-related microbial dysbiosis, dysregulated metabolism and treated T cell-mediated colitis.

characteristic: project name

characteristic: sample derived from

text: uncultured Blautia sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753918_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753919 of study SRP307210.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Firmicutes bacterium

text: uncultured Firmicutes bacterium

text: Illumina HiSeq 4000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753919_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13753921 of study SRP307210.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Clostridium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridium sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13753921_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

text: uncultured Clostridia bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13753921_bin.10_metawrap_v1.3_MAG