characteristic: ENA-LAST-UPDATE

text: LIMM

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Yes

text: human stool metagenome

text: no

text: no

text: Yes

text: feces metagenome

text: healthy volunteer

characteristic: sample type

text: feces metagenome

text: M

text: No


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIMM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: No

characteristic: alcohol

text: human stool metagenome

characteristic: description

text: no

characteristic: diabetes

text: no

characteristic: hyertension

text: No

text: feces metagenome

characteristic: organism

text: healthy volunteer

text: feces metagenome

text: F

characteristic: sex

text: No

characteristic: smoker

characteristic: title


characteristic: ENA-LAST-UPDATE

text: LIMM

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: No

text: human stool metagenome

text: no

text: no

text: No

text: feces metagenome

text: healthy volunteer

characteristic: sample type

text: feces metagenome

text: M

text: No


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIMM

characteristic: INSDC first public

text: public

text: No

text: human stool metagenome

text: no

text: no

text: Yes

text: feces metagenome

text: healthy volunteer

text: feces metagenome

text: F

text: No


text: LIMM

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: No

text: human stool metagenome

text: no

text: no

text: Yes

text: feces metagenome

text: healthy volunteer

text: feces metagenome

text: M

text: No


text: LIMM

text: public

text: No

characteristic: alcohol

text: human stool metagenome

characteristic: description

text: no

characteristic: diabetes

text: no

characteristic: hyertension

text: Yes

text: feces metagenome

text: healthy volunteer

text: feces metagenome

text: M

text: Yes


text: LIMM

text: public

text: Yes

text: human stool metagenome

text: yes

text: no

text: Yes

text: feces metagenome

characteristic: organism

text: healthy volunteer

text: feces metagenome

text: M

characteristic: sex

text: No

characteristic: smoker

characteristic: title


text: Not available

characteristic: ArrayExpress-PHENOTYPE

text: Plasmodium ovale

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: malaria parasite P. ovale

characteristic: common name

text: Plasmodium ovale

text: Not available

characteristic: phenotype

text: Plasmodium ovale

characteristic: subject id

text: Plasmodium ovale


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:University of Tartu, Institute of Biomedicine and Translational Medicine

characteristic: Submitter Id

text: Whole blood cells

characteristic: cell type

text: human

text: Blood sample

text: China

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID1


text: University of Tartu, Institute of Biomedicine and Translational Medicine

text: public

text: Whole blood cells

text: human

text: Blood sample

characteristic: description

text: China

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: FES_Blood_RNAseq sample ID2

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID3


text: public

characteristic: INSDC status

text: Whole blood cells

text: human

characteristic: common name

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID5


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID13


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID30


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID32


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID40


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID41


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID43


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID55


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID57


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID58


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID59


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: FES_Blood_RNAseq sample ID61


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: HC_Blood_RNAseq sample ID7


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: HC_Blood_RNAseq sample ID32


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: HC_Blood_RNAseq sample ID36


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: HC_Blood_RNAseq sample ID42


text: public

text: Whole blood cells

text: human

text: Blood sample

text: China

text: Homo sapiens

text: Homo sapiens

text: HC_Blood_RNAseq sample ID49


text: SINTEF Industry

text: public

tag: Namespace:SINTEF Industry

characteristic: collection date

text: Germany

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Methanosarcina barkeri MS

text: F-bacteria (5�-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3�), F-archaea (5�-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGGYGCAGCAG-3�) and, R-all (5�-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC-3�)

characteristic: pcr primers

characteristic: project name

text: 0.25 g

unit: g

characteristic: sample volume or weight for DNA extraction

text: Methanosarcina barkeri MS

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SINTEF Industry

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome

text: Methanobacterium formicicum JCM 10132

text: 0.25 g

text: Methanobacterium formicicum JCM 10132

text: MiSeq


characteristic: ENA-LAST-UPDATE

text: SINTEF Industry

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: Germany

text: not provided

text: not provided

text: metagenome

text: Methanothrix soehngenii GP6

characteristic: organism

text: 0.25 g

text: Methanothrix soehngenii GP6

text: MiSeq

characteristic: title


text: SINTEF Industry

text: public

text: Germany

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Methanosarcina barkeri MS

characteristic: project name

text: 0.25 g

text: Methanosarcina barkeri MS

text: MinION


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SINTEF Industry

text: public

text: Germany

text: not provided

text: not provided

text: metagenome

text: Methanobacterium formicicum JCM 10132

text: 0.25 g

characteristic: sample volume or weight for DNA extraction

text: Methanobacterium formicicum JCM 10132

text: MinION

characteristic: sequencing method


text: SINTEF Industry

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome

text: Methanothrix soehngenii GP6

text: 0.25 g

text: Methanothrix soehngenii GP6

text: MinION


characteristic: ENA-LAST-UPDATE

text: UTAR

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: Gentamicin mutant

characteristic: description

text: Malaysia

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: Lab

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Universitat de Barcelona

text: public

tag: Namespace:Universitat de Barcelona

text: Individual 1

text: Styela plicata

text: Styela plicata

characteristic: title


text: Universitat de Barcelona

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Individual 2

text: Styela plicata

text: Styela plicata


text: Universitat de Barcelona

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Individual 3

text: Styela plicata

text: Styela plicata


characteristic: ENA-LAST-UPDATE

text: Universitat de Barcelona

text: public

text: Individual 4

text: Styela plicata

text: Styela plicata


Curlcakes

text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC center name

text: public

text: Curlcakes

tag: Namespace:CENTER FOR GENOMIC REGULATION (CRG)

text: In vitro transcribed RNAs

text: synthetic construct

text: synthetic construct

text: Curlcakes


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

characteristic: INSDC status

text: Yeast total RNA

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: house mouse

characteristic: common name

text: Mouse Brain Nuclear/Mitochondrial RNA

text: Mus musculus

text: Mus musculus


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: zebrafish

text: Zebrafish PolyA Selected RNA (4hpf)

characteristic: description

text: Danio rerio

text: Danio rerio


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: zebrafish

text: Zebrafish Ribodepleted RNA (2hpf, 4hpf, 6hpf)

text: Danio rerio

text: Danio rerio


text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: cDNA Standards with various tails

text: synthetic construct

text: synthetic construct


E-MTAB-11815:Sample 20

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 20

tag: Namespace:IOWA STATE UNIVERSITY

unit: month

characteristic: age

text: Hereford

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: Protocols: Adult tissue collections. Procedures for tissue collection followed the Animal Care and Use protocol (#18464) approved by the Institutional Animal Care and Use Committee (IACUC), University of California, Davis (UCD). Four cattle (2 males and 2 females) were slaughtered at UCD using captive bolt under USDA inspection at 14 months old and were intact male and female Line 1 Herefords that had the same sire, provided by Fort Keogh Livestock and Range Research Lab (Tixier-Boichard et al. 2021). Tissue samples were flash frozen in liquid nitrogen then stored at -80 °C until further assay processing. Fetal tissue collections. Fetal sample collection and tissue collection were approved by the Institutional Animal Care and Use Committee (IACUC), University of Idaho (2017-67). Four pregnant females Line 1 Herefords were slaughtered at UI meats lab using captive bolt under USDA inspection. Animals were provided by Fort Keogh Livestock and Range Research Lab (Tixier-Boichard et al. 2021). Tissue samples were flash frozen in liquid nitrogen then stored at -80 °C until further assay processing. Adult tissue collections. Procedures for tissue collection followed the Animal Care and Use protocol (#18464) approved by the Institutional Animal Care and Use Committee (IACUC), University of California, Davis (UCD). Four cattle (2 males and 2 females) were slaughtered at UCD using captive bolt under USDA inspection at 14 months old and were intact male and female Line 1 Herefords that had the same sire, provided by Fort Keogh Livestock and Range Research Lab (Tixier-Boichard et al. 2021). Tissue samples were flash frozen in liquid nitrogen then stored at -80 °C until further assay processing. Fetal tissue collections. Fetal sample collection and tissue collection were approved by the Institutional Animal Care and Use Committee (IACUC), University of Idaho (2017-67). Four pregnant females Line 1 Herefords were slaughtered at UI meats lab using captive bolt under USDA inspection. Animals were provided by Fort Keogh Livestock and Range Research Lab (Tixier-Boichard et al. 2021). Tissue samples were flash frozen in liquid nitrogen then stored at -80 °C until further assay processing. Frozen tissue samples (Additional file18) were pulverized under liquid nitrogen using mortar and pestle. Permeabilized nuclei were obtained by resuspending pulverized tissue (5-15 mg) in 250 µL Nuclear Permeabilization Buffer [0.2% IGEPAL-CA630 (I8896, Sigma), 1 mM DTT (D9779, Sigma), Protease inhibitor (05056489001, Roche), and 5% BSA (A7906, Sigma) in PBS (10010-23, Thermo Fisher Scientific)], and incubating for 10 min on a rotator at 4°C. Nuclei were then pelleted by centrifugation for 5 min at 500 xg at 4°C. The pellet was resuspended in 25 µL ice-cold Tagmentation Buffer [33 mM Tris-acetate (pH = 7.8) (BP-152, Thermo Fisher Scientific), 66 mM K-acetate (P5708, Sigma), 11 mM Mg-acetate (M2545, Sigma), 16% DMF (DX1730, EMD Millipore) in molecular biology grade water (46000-CM, Corning)]. An aliquot was then taken and counted by hemocytometer to determine nuclei concentration. Approximately 50,000 nuclei were resuspended in 20 µL ice-cold Tagmentation Buffer and incubated with 1 µL Tagmentation enzyme (FC-121-1030; Illumina) at 37 °C for 30 min with shaking at 500 rpm. The tagmentated DNA was purified using MinElute PCR purification kit (28004, Qiagen). The libraries were amplified using NEBNext High-Fidelity 2X PCR Master Mix (M0541, NEB) with primer extension at 72°C for 5 min, denaturation at 98°C for 30 s, followed by 8 cycles of denaturation at 98°C for 10 s, annealing at 63°C for 30 s and extension at 72°C for 60 s. Amplified libraries were then purified using MinElute PCR purification kit (28004, Qiagen), and two size selection steps were performed using SPRIselect bead (B23317, Beckman Coulter) at 0.55X and 1.5X bead-to-sample volume ratios, respectively. ATAC-seq libraries were sequenced on an Illumina Nextseq 500 platform using Nextra V2 sequencing chemistry to generate 2 × 75 paired-end reads.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: abomasum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: Sample 20


E-MTAB-11815:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 51

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: abomasum

text: Bos taurus

text: male

text: Sample 51

characteristic: title


E-MTAB-11815:Sample 1

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 1

characteristic: Submitter Id

text: Hereford

text: ArrayExpress

text: adipocyte

characteristic: cell type

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: adipose tissue

text: Bos taurus

text: Sample 1


E-MTAB-11815:Sample 2

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 2

text: Hereford

characteristic: breed

text: ArrayExpress

text: adipocyte

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: adipose tissue

text: Bos taurus

text: Sample 2


E-MTAB-11815:Sample 3

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 3

text: Hereford

text: ArrayExpress

characteristic: broker name

text: adipocyte

text: cattle

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: adipose tissue

characteristic: organism part

text: Bos taurus

text: Sample 3


E-MTAB-11815:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 22

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: urinary bladder

text: Bos taurus

text: male

characteristic: sex

text: Sample 22


E-MTAB-11815:Sample 52

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 52

characteristic: Submitter Id

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: urinary bladder

text: Bos taurus

text: male

text: Sample 52

characteristic: title


E-MTAB-11815:Sample 39

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 39

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: bone marrow

text: Bos taurus

text: male

text: Sample 39


E-MTAB-11815:Sample 64

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 64

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: bone marrow

characteristic: organism part

text: Bos taurus

text: male

text: Sample 64


E-MTAB-11815:Sample 26

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 26

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: frontal cortex

text: Bos taurus

text: male

characteristic: sex

text: Sample 26


E-MTAB-11815:Sample 23

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 23

characteristic: Submitter Id

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: caecum

text: Bos taurus

text: male

text: Sample 23


E-MTAB-11815:Sample 53

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 53

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

characteristic: common name

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: caecum

text: Bos taurus

text: male

text: Sample 53

characteristic: title


E-MTAB-11815:Sample 24

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 24

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: cerebellum

text: Bos taurus

text: male

text: Sample 24


E-MTAB-11815:Sample 25

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 25

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: colon

characteristic: organism part

text: Bos taurus

text: male

text: Sample 25


E-MTAB-11815:Sample 54

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 54

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: colon

text: Bos taurus

text: male

characteristic: sex

text: Sample 54


E-MTAB-11815:Sample 27

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 27

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

characteristic: common name

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: duodenum

text: Bos taurus

text: male

text: Sample 27


E-MTAB-11815:Sample 55

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 55

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: duodenum

text: Bos taurus

text: male

text: Sample 55

characteristic: title


E-MTAB-11815:Sample 101

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 101

characteristic: age

text: Holstein

text: ArrayExpress

text: early-lactating

characteristic: clinical information

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

text: Sample 101


E-MTAB-11815:Sample 98

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 98

text: Holstein

text: ArrayExpress

text: early-lactating

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 98


E-MTAB-11815:Sample 28

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 28

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

characteristic: common name

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: caput epididymis

text: Bos taurus

text: male

text: Sample 28


E-MTAB-11815:Sample 56

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 56

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: caput epididymis

text: Bos taurus

text: male

text: Sample 56

characteristic: title


E-MTAB-11815:Sample 29

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 29

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: esophagus

text: Bos taurus

text: male

text: Sample 29


E-MTAB-11815:Sample 57

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 57

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: esophagus

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: Sample 57


E-MTAB-11815:Sample 77

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 77

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

characteristic: common name

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: brain

text: Bos taurus

text: Sample 77


E-MTAB-11815:Sample 86

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 86

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: brain

text: Bos taurus

text: Sample 86


E-MTAB-11815:Sample 78

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 78

text: Hereford

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: gonad

text: Bos taurus

text: Sample 78

characteristic: title


E-MTAB-11815:Sample 87

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 87

text: Hereford

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: gonad

text: Bos taurus

text: Sample 87


E-MTAB-11815:Sample 79

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 79

text: Hereford

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: heart

characteristic: organism part

text: Bos taurus

text: Sample 79


E-MTAB-11815:Sample 88

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 88

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

characteristic: common name

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: heart

text: Bos taurus

text: Sample 88


E-MTAB-11815:Sample 80

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 80

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: kidney

text: Bos taurus

text: Sample 80


E-MTAB-11815:Sample 89

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 89

text: Hereford

text: ArrayExpress

text: cattle

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: kidney

text: Bos taurus

text: Sample 89


E-MTAB-11815:Sample 81

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 81

text: Hereford

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: Sample 81

characteristic: title


E-MTAB-11815:Sample 90

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 90

text: Hereford

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: Sample 90


E-MTAB-11815:Sample 82

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 82

text: Hereford

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: muscle organ

text: Bos taurus

text: Sample 82


E-MTAB-11815:Sample 91

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 91

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: muscle organ

characteristic: organism part

text: Bos taurus

text: Sample 91


E-MTAB-11815:Sample 83

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 83

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: spleen

text: Bos taurus

text: Sample 83


E-MTAB-11815:Sample 92

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 92

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: description

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: spleen

text: Bos taurus

text: Sample 92


E-MTAB-11815:Sample 14

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 14

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: hair follicle

text: Bos taurus

text: female

characteristic: sex

text: Sample 14


E-MTAB-11815:Sample 8

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 8

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: hair follicle

text: Bos taurus

text: female

text: Sample 8

characteristic: title


E-MTAB-11815:Sample 30

text: IOWA STATE UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 30

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: gall bladder

characteristic: organism part

text: Bos taurus

text: male

text: Sample 30


E-MTAB-11815:Sample 58

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 58

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: common name

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: gall bladder

text: Bos taurus

text: male

text: Sample 58


E-MTAB-11815:Sample 31

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 31

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: heart

text: Bos taurus

text: male

text: Sample 31


E-MTAB-11815:Sample 59

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 59

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: heart

text: Bos taurus

text: male

characteristic: sex

text: Sample 59


E-MTAB-11815:Sample 32

text: IOWA STATE UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 32

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: hypothalamus

text: Bos taurus

text: male

text: Sample 32

characteristic: title


E-MTAB-11815:Sample 33

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 33

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: ileum

characteristic: organism part

text: Bos taurus

text: male

text: Sample 33


E-MTAB-11815:Sample 60

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 60

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: ileum

text: Bos taurus

text: male

text: Sample 60


E-MTAB-11815:Sample 15

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 15

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: isthmus

text: Bos taurus

text: male

text: Sample 15


E-MTAB-11815:Sample 9

text: IOWA STATE UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 9

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: isthmus

text: Bos taurus

text: male

characteristic: sex

text: Sample 9


E-MTAB-11815:Sample 34

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 34

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: jejunum

text: Bos taurus

text: male

text: Sample 34

characteristic: title


E-MTAB-11815:Sample 61

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 61

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: jejunum

characteristic: organism part

text: Bos taurus

text: male

text: Sample 61


E-MTAB-11815:Sample 35

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11815:Sample 35

text: Hereford

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: kidney

text: Bos taurus

text: male

text: Sample 35


E-MTAB-11815:Sample 62

text: IOWA STATE UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-11815:Sample 62

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: kidney

text: Bos taurus

text: male

text: Sample 62


E-MTAB-11815:Sample 102

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 102

text: Holstein

text: ArrayExpress

characteristic: broker name

text: lactating

characteristic: clinical information

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

characteristic: sex

text: Sample 102


E-MTAB-11815:Sample 95

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 95

characteristic: age

text: Holstein

text: ArrayExpress

text: lactating

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

characteristic: organism part

text: Bos taurus

text: female

text: Sample 95

characteristic: title


E-MTAB-11815:Sample 103

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 103

text: Holstein

text: ArrayExpress

text: late-pregnancy

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

text: Sample 103


E-MTAB-11815:Sample 96

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 96

characteristic: Submitter Id

text: Holstein

characteristic: breed

text: ArrayExpress

text: late-pregnancy

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

text: Sample 96


E-MTAB-11815:Sample 99

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 99

characteristic: age

text: Holstein

text: ArrayExpress

characteristic: broker name

text: late-pregnancy

characteristic: clinical information

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

characteristic: sex

text: Sample 99


E-MTAB-11815:Sample 36

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 36

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: liver

characteristic: organism part

text: Bos taurus

text: male

text: Sample 36

characteristic: title


E-MTAB-11815:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 38

text: Hereford

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: lung

text: Bos taurus

text: male

text: Sample 38


E-MTAB-11815:Sample 37

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 37

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: lymph node

text: Bos taurus

text: male

text: Sample 37


E-MTAB-11815:Sample 63

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 63

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: lymph node

text: Bos taurus

text: male

characteristic: sex

text: Sample 63


E-MTAB-11815:Sample 100

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 100

text: Holstein

text: ArrayExpress

text: mid-pregnancy

characteristic: clinical information

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

characteristic: organism part

text: Bos taurus

text: female

text: Sample 100

characteristic: title


E-MTAB-11815:Sample 104

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 104

text: Holstein

text: ArrayExpress

text: mid-pregnancy

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

text: Sample 104


E-MTAB-11815:Sample 97

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 97

characteristic: Submitter Id

text: Holstein

characteristic: breed

text: ArrayExpress

text: mid-pregnancy

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

text: Sample 97


E-MTAB-11815:Sample 40

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 40

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: muscle tissue

text: Bos taurus

text: male

characteristic: sex

text: Sample 40


E-MTAB-11815:Sample 4

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 4

text: Hereford

text: ArrayExpress

text: myoblast

characteristic: cell type

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: muscle tissue

characteristic: organism part

text: Bos taurus

text: Sample 4

characteristic: title


E-MTAB-11815:Sample 5

characteristic: ENA-CHECKLIST

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 5

text: Hereford

text: ArrayExpress

text: myoblast

text: cattle

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: muscle tissue

text: Bos taurus

text: Sample 5


E-MTAB-11815:Sample 6

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 6

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: myocyte

text: cattle

text: embryo

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: muscle tissue

text: Bos taurus

text: Sample 6


E-MTAB-11815:Sample 7

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 7

text: Hereford

text: ArrayExpress

characteristic: broker name

text: myocyte

characteristic: cell type

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: muscle tissue

text: Bos taurus

text: Sample 7


E-MTAB-11815:Sample 41

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 41

characteristic: age

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: omasum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: Sample 41

characteristic: title


E-MTAB-11815:Sample 65

characteristic: ENA-CHECKLIST

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 65

text: Hereford

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: omasum

text: Bos taurus

text: male

text: Sample 65


E-MTAB-11815:Sample 12

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 12

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: ovary

text: Bos taurus

text: female

text: Sample 12


E-MTAB-11815:Sample 18

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 18

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: common name

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: ovary

text: Bos taurus

text: female

text: Sample 18


E-MTAB-11815:Sample 42

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 42

text: Hereford

text: ArrayExpress

text: cattle

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: pancreas

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: Sample 42

characteristic: title


E-MTAB-11815:Sample 66

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 66

text: Hereford

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: pancreas

text: Bos taurus

text: male

text: Sample 66


E-MTAB-11815:Sample 43

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 43

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: pituitary gland

text: Bos taurus

text: male

text: Sample 43


E-MTAB-11815:Sample 67

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 67

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: pituitary gland

text: Bos taurus

text: male

text: Sample 67


E-MTAB-11815:Sample 85

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 85

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: placental cotyledon

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: Sample 85


E-MTAB-11815:Sample 94

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 94

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: placental cotyledon

text: Bos taurus

text: female

text: Sample 94

characteristic: title


E-MTAB-11815:Sample 84

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 84

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: placental caruncle

text: Bos taurus

text: male

text: Sample 84


E-MTAB-11815:Sample 93

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 93

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: placental caruncle

text: Bos taurus

text: female

text: Sample 93


E-MTAB-11815:Sample 74

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 74

text: Hereford

text: ArrayExpress

text: preadipocyte

characteristic: cell type

text: cattle

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: adipose tissue

characteristic: organism part

text: Bos taurus

text: Sample 74


E-MTAB-11815:Sample 75

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 75

text: Hereford

text: ArrayExpress

text: preadipocyte

text: cattle

text: embryo

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: adipose tissue

text: Bos taurus

text: Sample 75

characteristic: title


E-MTAB-11815:Sample 76

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 76

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: preadipocyte

text: cattle

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: adipose tissue

text: Bos taurus

text: Sample 76


E-MTAB-11815:Sample 44

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 44

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: ruminant reticulum

text: Bos taurus

text: male

characteristic: sex

text: Sample 44


E-MTAB-11815:Sample 68

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 68

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: ruminant reticulum

characteristic: organism part

text: Bos taurus

text: male

text: Sample 68


E-MTAB-11815:Sample 45

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 45

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: rumen

text: Bos taurus

text: male

text: Sample 45

characteristic: title


E-MTAB-11815:Sample 69

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 69

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: rumen

text: Bos taurus

text: male

text: Sample 69


E-MTAB-11815:Sample 46

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 46

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: skin

text: Bos taurus

text: male

text: Sample 46


E-MTAB-11815:Sample 70

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 70

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: skin

text: Bos taurus

text: male

characteristic: sex

text: Sample 70


E-MTAB-11815:Sample 47

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 47

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: spleen

characteristic: organism part

text: Bos taurus

text: male

text: Sample 47


E-MTAB-11815:Sample 21

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 21

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: subcutaneous adipose tissue

text: Bos taurus

text: male

text: Sample 21

characteristic: title


E-MTAB-11815:Sample 48

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 48

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: testis

text: Bos taurus

text: male

text: Sample 48


E-MTAB-11815:Sample 71

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 71

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: testis

text: Bos taurus

text: male

text: Sample 71


E-MTAB-11815:Sample 49

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 49

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: thymus

text: Bos taurus

text: male

characteristic: sex

text: Sample 49


E-MTAB-11815:Sample 72

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 72

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: thymus

characteristic: organism part

text: Bos taurus

text: male

text: Sample 72


E-MTAB-11815:Sample 50

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 50

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: tongue

text: Bos taurus

text: male

text: Sample 50

characteristic: title


E-MTAB-11815:Sample 73

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 73

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: tongue

text: Bos taurus

text: male

text: Sample 73


E-MTAB-11815:Sample 13

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 13

text: Hereford

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: endometrium

text: Bos taurus

text: female

text: Sample 13


E-MTAB-11815:Sample 19

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 19

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: endometrium

text: Bos taurus

text: female

characteristic: sex

text: Sample 19


E-MTAB-11815:Sample 11

characteristic: ENA-LAST-UPDATE

text: IOWA STATE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11815:Sample 11

characteristic: age

text: Hereford

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: endometrium

characteristic: organism part

text: Bos taurus

text: female

text: Sample 11


E-MTAB-11815:Sample 17

characteristic: ENA-CHECKLIST

text: IOWA STATE UNIVERSITY

text: public

text: E-MTAB-11815:Sample 17

text: Hereford

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: endometrium

text: Bos taurus

text: female

text: Sample 17

characteristic: title


E-MTAB-11815:Sample 10

characteristic: External Id

text: IOWA STATE UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11815:Sample 10

text: Hereford

text: ArrayExpress

text: virgin

characteristic: clinical information

text: cattle

text: adult

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

text: Sample 10


E-MTAB-11815:Sample 16

characteristic: ENA-FIRST-PUBLIC

text: IOWA STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-11815:Sample 16

characteristic: Submitter Id

text: Hereford

characteristic: breed

text: ArrayExpress

text: virgin

text: cattle

text: adult

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: mammary gland

text: Bos taurus

text: female

characteristic: sex

text: Sample 16


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

tag: Namespace:Inland Norway university of applied sciences

text: cattle

text: DNA isolated directly from mastitis milk using NG kit and according to strategy A

text: Bos taurus

text: Bos taurus


text: Inland Norway university of applied sciences

text: public

text: cattle

characteristic: common name

characteristic: description

text: Bos taurus

text: Bos taurus


characteristic: External Id

text: public

text: cattle

text: DNA isolated directly from mastitis milk using PF kit and according to strategy A

text: Bos taurus

text: Bos taurus

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: cattle

text: DNA isolated directly from mastitis milk using PF kit and according to strategy C

text: Bos taurus

text: Bos taurus


text: public

characteristic: SRA accession

text: Strategy_D_Mol_Com5_Cent_1st_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation-using Mol Comp5 kit_Sample 1_according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Com5_Cent_2nd_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation-using Mol Comp5 kit_Sample 2_according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Com5_CentNuc_1st_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation and nuclease treatment-using Mol Comp5 kit_Sample 1_according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Com5_CentNuc_2nd_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation and nuclease treatment-using Mol Comp5 kit_Sample 2_according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Com5_CentOxNuc_1st_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation, ox bile and nuclease treatment-using Mol Comp5 kit_Sample 1_according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Com5_CentOxNuc_2nd_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation, ox bile and nuclease treatment-using Mol Comp5 kit_Sample 2_according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Plus_Cent_1st_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation using Mol Plus kit and according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Inland Norway university of applied sciences

text: public

text: Strategy_D_Mol_Plus_CentNuc_1st_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation and nuclease treatment using Mol Plus kit and according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: public

text: Strategy_D_Mol_Plus_CentOxNuc_1st_Sample.fastq.gz

text: DNA isolated directly from mastitis milk following pre centrifugation, ox bile and nuclease treatment using Mol Plus kit and according to strategy D

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Plasmodium Falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

text: Senior Data Scientist

characteristic: INSDC first public

text: public

tag: Namespace:Senior Data Scientist

text: ArrayExpress

characteristic: broker name

text: NHBE

characteristic: cell line

text: epithelial cell of lung

characteristic: cell type

text: human

text: Protocols: Normal human lung fibroblasts (NHLF; Lonza, CC-2512) and IPF patient-derived fibroblasts (IHLF; Asterand, 16769) were used between passage 4 and 8 and cultivated in fibroblast growth medium 2 (FGM-2; Lonza), supplemented with 100 units/ml of penicillin and 100 µg/ml of streptomycin, following the supplier's instructions. Normal human bronchial epithelial cells (i.e. NHBE; Lonza, CC-2541), NHBEC (Lonza, CC-2540) or HBEpiC (ScienCell, 3210-1ea), as well as human tracheal epithelial cells (HTEC; Cell Applications, 06090742) were used between passage 3 and 4 and cultivated in bronchial epithelial cell growth medium (BEGM; Lonza) supplemented according to the supplier’s instructions. The human lung epithelial cell lines NCI-H2452 (ATCC, CRL-5946), A549 (ATCC, CCL-185), NCI-H1975 (ATCC, CRL-5908) and NCI-H1650 (ATCC, CRL-5883) were cultured in RPMI 1640 (Gibco) supplemented with 10% (vol/vol) heat-inactivated FBS (Gibco) and 100 units/ml of penicillin and 100 µg/ml of streptomycin. Human lung epithelial cell lines Calu3 (ATCC, HTB-55) and A427 (ATCC, HTB-53) were cultivated in MEM Eagle medium (Gibco) supplemented with 10% (vol/vol) heat-inactivated FBS (Gibco), 2 mM L-Glutamine, 0.1 mM non-essential amino acids (NEAA), 1 mM Sodium Pyruvate and 100 units/ml of penicillin and 100 µg/ml of streptomycin. NHLF/ NHBE co-culture: NHLF were resuspended in FGM-2 growth medium (Lonza), mixed with an equal volume of NHBE in BEGM growth medium (Lonza), and seeded into a 96-well flat-bottom culture plate (Corning) at a density of 20000 and 1600 cells per well, respectively. Compound dilution series were added, and the co-culture was incubated for 18h at 37°C/5 % CO2. The medium was then replaced with FBM (Lonza) containing 0.1 % faf BSA and the compounds at the indicated concentrations. The medium was supplemented with 100 units/ml penicillin, 100 μg/ml streptomycin for the entire duration of the culture. If not indicated otherwise the co-culture was incubated at 37°C/5 % CO2 for 96 h. Cells were isolated by FACS and lysed in RL Lysis Buffer from NORGEN Single cell RNA purification kit (Norgen). Total RNA was isolated using NORGEN Single cell RNA purification kit including a DNase treatment (Norgen), according to the manufacturer's instructions. Quality control was performed using Qubit 3.0 and RNA HS kit (Thermo Fisher Scientific). Quality was assessed with RNA PicoLabChip (Agilent Technologie) on a Bioanalyzer. In all samples the ratio of absorption at 260 nm/280 nm was between 1.8 and 2.2 u and the RNA Integrity Number (RIN) was > 8.00. All samples passed the quality thresholds. RNA-Seq libraries of poly(A)-selected RNA were isolated from 50 ng of total RNA using NuGen Universal Plus mRNA-Seq kit (NuGen) according to the manufacturer’s recommendations. Final library concentration was determined with Qubit HS cDNA kit (ThermoFisherScientific) and quality was assessed with the Fragment Analyzer HS NGS kit (Agilent). Evaluation of the size, was performed based on a smear range of 100-1000 bp with average size around 330 bp. In parallel qPCR quantification was performed using KAPA library quantification kit (Roche).

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: mono-culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: epithelium of bronchus

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Senior Data Scientist

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: NHBE

text: epithelial cell of lung

text: human

characteristic: common name

characteristic: description

text: pulmonary fibrosis

text: wild type genotype

text: co-culture with NHLF

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: epithelium of bronchus

text: Homo sapiens


characteristic: External Id

text: Senior Data Scientist

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: NHLF

text: lung fibroblast

text: human

text: normal

text: wild type genotype

text: mono-culture

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Senior Data Scientist

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: NHLF

characteristic: cell line

text: lung fibroblast

characteristic: cell type

text: human

text: pulmonary fibrosis

text: wild type genotype

text: co-culture with NHBE

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: qiita_sid_14385:14385.BLANK.AssayAssure.20C.BLANK.1

text: Control blank (Assay Assure only)

text: TRUE

characteristic: elevation

text: Negative

text: sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

text: years

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: control assay assure

characteristic: sample type

text: metagenome

characteristic: specimen id

text: AssayAssure

text: Effects of preservation method on sample yield for vaginal swab samples


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_14385:14385.BLANK.AssayAssure.20C.BLANK.2

characteristic: Submitter Id

text: Control blank (Assay Assure only)

characteristic: description

text: TRUE

text: Negative

text: sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: years

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control assay assure

text: metagenome

text: AssayAssure

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC first public

text: public

text: qiita_sid_14385:14385.BLANK.EtOH.20C.BLANK.1

text: Control blank (Assay Assure only)

text: TRUE

characteristic: elevation

text: Negative

text: sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

text: years

text: metagenome

text: UCSDMI

text: FALSE

text: control assay assure

text: metagenome

text: AssayAssure


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: qiita_sid_14385:14385.BLANK.EtOH.20C.BLANK.2

text: Control blank (Assay Assure only)

text: TRUE

text: Negative

text: sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

text: years

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: control assay assure

characteristic: sample type

text: metagenome

characteristic: specimen id

text: AssayAssure


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_14385:14385.BLANK.None.20C.BLANK.1

characteristic: Submitter Id

text: Control blank (Assay Assure only)

characteristic: description

text: TRUE

text: Negative

text: sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: years

text: metagenome

text: UCSDMI

text: FALSE

text: control assay assure

text: metagenome

text: AssayAssure


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC first public

text: public

text: qiita_sid_14385:14385.BLANK.None.20C.BLANK.2

text: Control blank (Assay Assure only)

text: TRUE

characteristic: elevation

text: Negative

text: sterile water blank

text: urban biome

characteristic: env biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: years

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control assay assure

text: metagenome

text: AssayAssure

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Extraction Blank (no sample plated)

text: TRUE

text: Negative

text: sterile water blank

text: urban biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: control blank DNA extraction

text: metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.K.AssayAssure.20C.vaginalswab.1

text: Vaginal sample obtained in duplicate on cotton swab

text: TRUE

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-vaginal

text: mucus

text: USA:CA:San Diego

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:reproductive system

characteristic: host body habitat

text: not provided

characteristic: host body mass index

text: UBERON:mucus

characteristic: host body product

text: UBERON:vagina

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

text: K

characteristic: host taxid

text: not provided

characteristic: host weight

text: years

text: cm

text: kg

text: human vaginal metagenome

text: UCSDMI

text: FALSE

text: vaginal mucus

characteristic: sample type

text: assayassure

text: human vaginal metagenome

text: female

characteristic: sex

characteristic: specimen id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.K.AssayAssure.20C.vaginalswab.2

characteristic: Submitter Id

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-vaginal

characteristic: env package

text: mucus

text: USA:CA:San Diego

text: not provided

text: UBERON:reproductive system

text: not provided

text: UBERON:mucus

text: UBERON:vagina

text: human

text: not provided

text: adult

text: Homo sapiens

text: K

characteristic: host subject id

text: not provided

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human vaginal metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: vaginal mucus

text: assayassure

text: human vaginal metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.K.EtOH.20C.vaginalswab.1

text: TRUE

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-vaginal

text: mucus

text: USA:CA:San Diego

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:reproductive system

characteristic: host body habitat

text: not provided

characteristic: host body mass index

text: UBERON:mucus

characteristic: host body product

text: UBERON:vagina

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

text: K

characteristic: host taxid

text: not provided

characteristic: host weight

text: years

text: cm

text: kg

text: human vaginal metagenome

text: UCSDMI

text: FALSE

text: vaginal mucus

characteristic: sample type

text: human vaginal metagenome

text: female

characteristic: sex

characteristic: specimen id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.K.EtOH.20C.vaginalswab.2

characteristic: Submitter Id

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-vaginal

characteristic: env package

text: mucus

text: USA:CA:San Diego

text: not provided

text: UBERON:reproductive system

text: not provided

text: UBERON:mucus

text: UBERON:vagina

text: human

text: not provided

text: adult

text: Homo sapiens

text: K

characteristic: host subject id

text: not provided

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human vaginal metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: vaginal mucus

text: human vaginal metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.K.None.20C.vaginalswab.1

text: TRUE

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-vaginal

text: mucus

text: USA:CA:San Diego

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:reproductive system

characteristic: host body habitat

text: not provided

characteristic: host body mass index

text: UBERON:mucus

characteristic: host body product

text: UBERON:vagina

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

text: K

characteristic: host taxid

text: not provided

characteristic: host weight

text: years

text: cm

text: kg

text: human vaginal metagenome

text: UCSDMI

text: FALSE

text: vaginal mucus

characteristic: sample type

text: human vaginal metagenome

text: female

characteristic: sex

characteristic: specimen id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.K.None.20C.vaginalswab.2

characteristic: Submitter Id

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-vaginal

characteristic: env package

text: mucus

text: USA:CA:San Diego

text: not provided

text: UBERON:reproductive system

text: not provided

text: UBERON:mucus

text: UBERON:vagina

text: human

text: not provided

text: adult

text: Homo sapiens

text: K

characteristic: host subject id

text: not provided

text: years

text: cm

text: kg

characteristic: latitude

characteristic: longitude

text: human vaginal metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: vaginal mucus

text: human vaginal metagenome

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1A.50million.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 50000000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: geo loc name

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

characteristic: sample type

text: synthetic metagenome


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1A.50million.prev

characteristic: Submitter Id

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1B.5million.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 5000000 cells

characteristic: description

text: TRUE

characteristic: elevation

text: Positive

text: Mock community

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: cell culture

text: USA:CA:San Diego

characteristic: host subject id

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1B.5million.prev

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: latitude

characteristic: longitude

text: synthetic metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome

characteristic: title

text: Effects of preservation method on sample yield for vaginal swab samples


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1C.500thousand.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 500000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: geo loc name

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

characteristic: sample type

text: synthetic metagenome


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1C.500thousand.prev

characteristic: Submitter Id

characteristic: description

text: TRUE

characteristic: elevation

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1D.50thousand.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 50000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: cell culture

text: USA:CA:San Diego

characteristic: host subject id

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1D.50thousand.prev

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: latitude

characteristic: longitude

text: synthetic metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1E.5thousand.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 5000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: geo loc name

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

characteristic: sample type

text: synthetic metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1E.5thousand.prev

characteristic: Submitter Id

characteristic: description

text: TRUE

characteristic: elevation

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1F.5hundred.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 500 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: cell culture

text: USA:CA:San Diego

characteristic: host subject id

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1F.5hundred.prev

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: latitude

characteristic: longitude

text: synthetic metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1G.50.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 50 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: geo loc name

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

characteristic: sample type

text: synthetic metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1G.50.prev

characteristic: Submitter Id

characteristic: description

text: TRUE

characteristic: elevation

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1H.5.new

text: Katharoseq control serially diluted (gram negative Paracoccus sp, gram positive Bacillus subtilis): 5 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: cell culture

text: USA:CA:San Diego

characteristic: host subject id

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.2speciesmock.1H.5.prev

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: latitude

characteristic: longitude

text: synthetic metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome

text: Effects of preservation method on sample yield for vaginal swab samples

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.Katharo5.Zymo.2A.50million

text: Katharoseq control serially diluted (ZYMO mock): 50000000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: geo loc name

text: zymo

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

characteristic: sample type

text: synthetic metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.Katharo5.Zymo.2B.5million

characteristic: Submitter Id

text: Katharoseq control serially diluted (ZYMO mock): 5000000 cells

characteristic: description

text: TRUE

characteristic: elevation

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: zymo

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.Zymo.2C.500thousand

text: Katharoseq control serially diluted (ZYMO mock): 500000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: cell culture

text: USA:CA:San Diego

characteristic: host subject id

text: zymo

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.Zymo.2D.50thousand

text: Katharoseq control serially diluted (ZYMO mock): 50000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: zymo

characteristic: latitude

characteristic: longitude

text: synthetic metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome

characteristic: title


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.Katharo5.Zymo.2E.5thousand

text: Katharoseq control serially diluted (ZYMO mock): 5000 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

characteristic: geo loc name

text: zymo

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

characteristic: sample type

text: synthetic metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_14385:14385.Katharo5.Zymo.2F.5hundred

characteristic: Submitter Id

text: Katharoseq control serially diluted (ZYMO mock): 500 cells

characteristic: description

text: TRUE

characteristic: elevation

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: zymo

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: qiita_sid_14385:14385.Katharo5.Zymo.2G.50

text: Katharoseq control serially diluted (ZYMO mock): 50 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: cell culture

text: USA:CA:San Diego

characteristic: host subject id

text: zymo

text: synthetic metagenome

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_14385:14385.Katharo5.Zymo.2H.5

text: Katharoseq control serially diluted (ZYMO mock): 5 cells

text: TRUE

text: Positive

text: Mock community

text: urban biome

text: research facility

text: misc environment

text: cell culture

text: USA:CA:San Diego

text: zymo

characteristic: latitude

characteristic: longitude

text: synthetic metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control positive

text: synthetic metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_14385:14385.L.AssayAssure.20C.vaginalswab.1

text: Vaginal sample obtained in duplicate on cotton swab

text: TRUE

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-vaginal

text: mucus

text: USA:CA:San Diego

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:reproductive system

characteristic: host body habitat

text: not provided

characteristic: host body mass index

text: UBERON:mucus

characteristic: host body product

text: UBERON:vagina

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

text: L

characteristic: host taxid

text: not provided

characteristic: host weight

text: years

text: cm

text: kg

text: human vaginal metagenome

text: UCSDMI

text: FALSE

text: vaginal mucus

characteristic: sample type

text: human vaginal metagenome

text: female

characteristic: sex

characteristic: specimen id

text: Effects of preservation method on sample yield for vaginal swab samples

text: W