text: public

characteristic: altitude

text: 0.right colon

characteristic: depth

text: medium

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: long

text: 16S rRNA

text: normal


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre for Translational Microbiome Research (CTMR)

characteristic: Submitter Id

text: 1.left colon

text: processed based on https://doi.org/10.1101/286526

text: human gut biopsy from patient with late stage CRC

characteristic: description

text: low

text: environment associated with an animal part or small animal [ENVO:01001055]

text: intestine environment [ENVO:2100002]

text: intestine environment [ENVO:2100002]|intestinal epithelium [UBERON:0001277]|intestinal mucosaUBERON:0001242

text: colorectal adenocarcinoma [DOID:0050861]

text: Sweden [GAZ:00002729]; Jonkoping County [GAZ:00003802]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

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text: 57.78 14.16

text: paired

text: False

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text: https://doi.org/10.1101/286526 (1 step PCR)

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characteristic: organism

text: human gut metagenome

text: initial denaturation:95C5min,98C_0.333min;annealing:51C_20s;elongation:72C_20s;final elongation:72C_1min;25

text: FWD:CCTACGGGNGGCWGCAG;REV:GGACTACHVGGGTWTCTAAT

text: no

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characteristic: sex

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characteristic: survival

text: 16S rRNA

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text: Centre for Translational Microbiome Research (CTMR)

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characteristic: altitude

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text: False

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text: no

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characteristic: ENA-CHECKLIST

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characteristic: External Id

characteristic: INSDC center name

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characteristic: INSDC last update

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characteristic: Submitter Id

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text: biopsy [OBI:0002650]

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characteristic: organism

text: human gut metagenome

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characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC first public

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characteristic: SRA accession

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text: human gut metagenome

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characteristic: altitude

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text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

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text: Illumina MiSeq [OBI: 0002003]

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

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text: human gut metagenome

text: yes

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text: biopsy

text: missing: not collected

text: human gut metagenome

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characteristic: INSDC center name

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text: public

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

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text: human gut metagenome

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characteristic: INSDC status

characteristic: SRA accession

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text: 1.left colon

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

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text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

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characteristic: description

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text: 57.78 14.16

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text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

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text: biopsy

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text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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text: 16S rRNA

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text: public

characteristic: altitude

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text: biopsy [OBI:0002650]

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text: human gut metagenome

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characteristic: sample-id

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.right colon

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text: yes

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text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

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text: yes

text: yes

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text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: survival

text: 16S rRNA

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characteristic: INSDC center name

characteristic: INSDC first public

text: public

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: human gut metagenome

text: yes

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text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: INSDC last update

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characteristic: SRA accession

text: 0.right colon

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text: biopsy [OBI:0002650]

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text: missing:not collected

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

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text: human gut metagenome

text: yes

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text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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text: stage III

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text: 16S rRNA

text: normal


text: public

characteristic: Submitter Id

text: 0.right colon

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: missing:not collected

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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text: 16S rRNA

text: tumor


text: public

characteristic: altitude

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characteristic: depth

text: medium

text: intestine environment [ENVO:2100002]

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text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

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text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

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text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: sex

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characteristic: INSDC center name

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text: public

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text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: missing:not collected

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text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

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characteristic: survival

text: 16S rRNA

text: tumor

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characteristic: INSDC last update

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text: missing:not collected

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

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text: yes

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text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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text: radiation


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 0.right colon

characteristic: description

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text: intestine environment [ENVO:2100002]

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text: biopsy [OBI:0002650]

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text: missing:not collected

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text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

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text: long

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 0.right colon

characteristic: depth

text: medium

text: intestine environment [ENVO:2100002]

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characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 1.left colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: short

text: 16S rRNA

text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 1.left colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

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text: 16S rRNA

text: normal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

characteristic: sex

text: stage III

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text: 16S rRNA

text: tumor

text: radiation


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

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characteristic: survival

text: 16S rRNA

text: normal

text: radiation


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 0.right colon

text: low

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

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text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

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text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

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text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 0.right colon

characteristic: depth

characteristic: description

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text: intestine environment [ENVO:2100002]

text: Homo spaiens

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text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

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text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: normal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1.left colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

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text: 16S rRNA

text: tumor


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 1.left colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

characteristic: sex

text: stage III

text: short

text: 16S rRNA

text: normal


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: short

characteristic: survival

text: 16S rRNA

text: tumor

text: radiation


text: public

characteristic: altitude

characteristic: depth

text: low

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: short

text: 16S rRNA

text: normal

text: radiation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.right colon

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 0.right colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: normal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1.left colon

text: high

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

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text: 16S rRNA

text: tumor


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 1.left colon

text: high

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: short

text: 16S rRNA

text: normal


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 0.right colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

characteristic: sex

text: stage IV

text: long

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 0.right colon

characteristic: depth

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: long

characteristic: survival

text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: medium

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: long

text: 16S rRNA

text: tumor

text: radiation


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: long

text: 16S rRNA

text: normal

text: radiation


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: tumor


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: normal


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 0.right colon

text: high

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: long

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 0.right colon

characteristic: depth

text: high

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

characteristic: sex

text: stage IV

text: long

text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

characteristic: survival

text: 16S rRNA

text: tumor

text: radiation


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: low

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

text: 16S rRNA

text: normal

text: radiation


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: tumor

text: radiation


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: normal

text: radiation


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 1.left colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 1.left colon

characteristic: depth

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

characteristic: sex

text: stage III

text: long

text: 16S rRNA

text: tumor

text: radiation


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

characteristic: survival

text: 16S rRNA

text: normal

text: radiation


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 0.right colon

text: low

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

text: 16S rRNA

text: tumor


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 0.right colon

characteristic: description

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: long

text: 16S rRNA

text: normal


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage IV

text: long

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

characteristic: depth

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage IV

text: long

text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.right colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage IV

text: long

text: 16S rRNA

text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 0.right colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

characteristic: sex

text: stage IV

text: long

text: 16S rRNA

text: normal


text: IBPS Sorbonne universite

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296456

tag: Namespace:IBPS Sorbonne universite

text: baker's yeast

characteristic: common name

text: Sample is the strain ABH/YJM454_1b. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3894921)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ABH

characteristic: title


text: IBPS Sorbonne universite

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296457

text: baker's yeast

text: Sample is the strain ADM/CLIB324_2. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3894961)

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ADM


text: IBPS Sorbonne universite

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296458

characteristic: Submitter Id

text: baker's yeast

text: Sample is the strain ADQ/K12_2. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3894964)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ADQ


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296459

text: baker's yeast

text: Sample is the strain ADS/T73_1b. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3894966)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ADS


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296460

text: baker's yeast

text: Sample is the strain AEG/CBS7962. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3894974)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: AEG


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296461

text: baker's yeast

text: Sample is the strain AKR/CLQCA_05-006. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895070)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: AKR


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:909-296462

text: baker's yeast

text: Sample is the strain ANE/YPS134. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895112)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ANE


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296463

text: baker's yeast

text: Sample is the strain ASN/CLIB630. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895186)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ASN


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296464

text: baker's yeast

text: Sample is the strain AVB/CECT10266. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895205)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: AVB


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296465

text: baker's yeast

text: Sample is the strain BAH/SX3. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895227)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BAH


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296466

text: baker's yeast

text: Sample is the strain BAM/HN10. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895231)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BAM


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296467

text: baker's yeast

text: Sample is the strain BCN/HE015. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895269)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BCN


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296468

text: baker's yeast

text: Sample is the strain BHH/CLIB1071. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895356)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BHH


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296469

text: baker's yeast

text: Sample is the strain CBM/3. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895572)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CBM


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296470

text: baker's yeast

text: Sample is the strain CFA/Dji2-2A(a). Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895629)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CFA


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296471

text: baker's yeast

text: Sample is the strain CFF/6.2_WLP570. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895634)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CFF


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296472

text: baker's yeast

text: Sample is the strain CIC/Ponton_11. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895683)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CIC


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296473

text: baker's yeast

text: Sample is the strain CNT/RP11.4.11. Originally sequenced in Istace et al. 2017 (PRJEB14774/SAMEA3895767)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CNT


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296474

text: baker's yeast

text: Sample is the strain ACA/EM93_3. Originally sequenced in Abou Saada et al. 2021 (PRJEB39456/SAMEA7067359)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: ACA


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296475

text: baker's yeast

text: Sample is the strain BMB/UWOPS03-433.3. Originally sequenced in Abou Saada et al. 2021 (PRJEB39456/SAMEA7067360)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: BMB


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296476

text: baker's yeast

text: Sample is the strain CCN/VKM_Y-504:S. Originally sequenced in Abou Saada et al. 2021 (PRJEB39456/SAMEA7067361)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CCN


text: IBPS Sorbonne universite

text: public

text: ena-SAMPLE-TAB-15-11-2022-08:05:42:910-296477

text: baker's yeast

text: Sample is the strain CRL/C-6. Originally sequenced in Abou Saada et al. 2021 (PRJEB39456/SAMEA7067362)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: CRL


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679301 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Porphyromonadaceae bacterium

text: This project was an investigation of fecal microbiome samples of mice on chow and high-fat western diet over 12 weeks.

characteristic: project name

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679301_bin.1_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679301_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679302 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679302_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679302_bin.9_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679303 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679303_bin.14_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679303_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679305 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679305_bin.14_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679305_bin.6_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

text: This project was an investigation of fecal microbiome samples of mice on chow and high-fat western diet over 12 weeks.

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679305_bin.7_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Catabacteriaceae;g__Catabacter;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679305_bin.8_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679305_bin.9_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679306 of study SRP321805.

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679306_bin.11_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679307 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnoclostridium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnoclostridium sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Lachnoclostridium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679307_bin.11_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679307_bin.5_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Eubacterium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacterium sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Eubacteriaceae;g__Eubacterium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679307_bin.7_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679308 of study SRP321805.

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679308_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679309 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Enterococcus faecium

text: This project was an investigation of fecal microbiome samples of mice on chow and high-fat western diet over 12 weeks.

characteristic: project name

characteristic: sample derived from

text: Enterococcus faecium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecium

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679309_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Akkermansia muciniphila

characteristic: organism

text: Akkermansia muciniphila

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679309_bin.3_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679311 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679311_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679312 of study SRP321805.

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679312_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillibacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Oscillibacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Oscillospiraceae;g__Oscillibacter;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679312_bin.15_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679312_bin.16_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679312_bin.17_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: This project was an investigation of fecal microbiome samples of mice on chow and high-fat western diet over 12 weeks.

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679312_bin.20_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679312_bin.21_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679312_bin.3_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679312_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: not provided

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679312 of study SRP321805.

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679312_bin.7_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: not provided

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679313 of study SRP321805.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Mollicutes bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Mollicutes bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR14679313_bin.7_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: not provided

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14679315 of study SRP321805.

characteristic: description

text: feces

text: USA

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR14679315_bin.1_metawrap_v1.3_MAG

characteristic: title