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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

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tag: Namespace:Tree of Life Programme

text: JAAKKO POHJOISMAKI

text: University of Eastern Finland

text: Finland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North Karelia | Ilomantsi | Kelovaara

characteristic: geographic location (region and locality)

text: Indoors of an old farmhouse

characteristic: habitat

text: JAAKKO POHJOISMAKI

text: University of Eastern Finland

text: adult

characteristic: lifestage

text: Scenopinus jerei

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Scenopinus jerei

text: FEMALE

characteristic: sex

text: NOT PROVIDED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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characteristic: collecting institution

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text: University of Eastern Finland

text: adult

text: Scenopinus jerei

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Scenopinus jerei

text: MALE

text: NOT PROVIDED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

text: North Karelia | Ilomantsi | Kelovaara

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characteristic: habitat

text: JAAKKO POHJOISMAKI

text: University of Eastern Finland

text: adult

text: Scenopinus jerei

text: WHOLE ORGANISM

characteristic: sample same as

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text: NOT PROVIDED

text: N


text: Sanger Institute

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characteristic: INSDC center name

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characteristic: INSDC status

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text: Scenopinus jerei

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characteristic: organism part

characteristic: project name

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text: MALE

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text: N

characteristic: symbiont

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WARWICK

text: public

tag: Namespace:UNIVERSITY OF WARWICK

characteristic: Submitter Id

text: Mixed population of Auanema rhodensis containing many worms of various developmental stages and sexual morphs.

characteristic: description

text: Auanema rhodensis

characteristic: organism

text: Auanema rhodensis

text: DNA from a mixed population

characteristic: title


text: University of Tartu, Estonia

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text: public

text: ena-upload-cli v0.6.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Diana Pilvar

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

text: human

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characteristic: host health state

text: Homo sapiens

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text: female

characteristic: host sex

characteristic: host subject id

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characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance


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text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: description

text: Estonia

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text: human

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text: Homo sapiens

text: male

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


text: University of Tartu, Estonia

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characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collecting institution

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1109R14609/2022

characteristic: organism

text: other

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collection date

characteristic: collector name

text: Switzerland

text: JU

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/JU-Risch-1114R14646/2022

text: other


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: SG

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SG-Risch-1109R14612/2022

characteristic: isolate

text: other

characteristic: sample capture status


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

tag: Namespace:Public Health Authority of the Slovak Republic

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated


characteristic: External Id

text: Public Health Authority of the Slovak Republic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: organism


characteristic: External Id

text: University of Duisburg-Essen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University of Duisburg-Essen

text: genotype at a certain temperature light setting

characteristic: block

text: clonal cell culture

characteristic: description

text: exponential growth

text: most northern sample station and thus warmest region of distribution area

characteristic: ecotype

text: illumination

characteristic: environmental stress

text: genotype

characteristic: experimental factor 1

text: temperature

characteristic: experimental factor 2

text: OMNI

characteristic: genotype

text: 6°C, high light (87-121 µmol/m2s)

characteristic: growth condition

text: Fragilariopsis kerguelensis

text: biological

characteristic: replicate

text: between 4 and 6 hr after light on

characteristic: sampling time point

text: Fragilariopsis kerguelensis

characteristic: strain

text: > one period of exponential growth

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Duisburg-Essen

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

text: OMNI

text: 6°C, low light (15-30 µmol/m2s)

text: Fragilariopsis kerguelensis

characteristic: organism

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


characteristic: External Id

text: University of Duisburg-Essen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: block

text: clonal cell culture

characteristic: description

text: exponential growth

characteristic: ecotype

text: illumination

characteristic: environmental stress

text: genotype

characteristic: experimental factor 1

text: temperature

text: OMNI

text: 0°C, low light (15-30 µmol/m2s)

text: Fragilariopsis kerguelensis

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


text: University of Duisburg-Essen

text: public

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

characteristic: experimental factor 2

text: OMNI

characteristic: genotype

text: 0°C, high light (87-121 µmol/m2s)

characteristic: growth condition

text: Fragilariopsis kerguelensis

text: biological

characteristic: replicate

text: between 4 and 6 hr after light on

characteristic: sampling time point

text: Fragilariopsis kerguelensis

characteristic: strain

text: > one period of exponential growth

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Duisburg-Essen

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

text: NORTH

text: 6°C, high light (87-121 µmol/m2s)

text: Fragilariopsis kerguelensis

characteristic: organism

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


characteristic: External Id

text: University of Duisburg-Essen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: block

text: clonal cell culture

characteristic: description

text: exponential growth

characteristic: ecotype

text: illumination

characteristic: environmental stress

text: genotype

characteristic: experimental factor 1

text: temperature

text: NORTH

text: 6°C, low light (15-30 µmol/m2s)

text: Fragilariopsis kerguelensis

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


text: University of Duisburg-Essen

text: public

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

characteristic: experimental factor 2

text: NORTH

characteristic: genotype

text: 0°C, low light (15-30 µmol/m2s)

characteristic: growth condition

text: Fragilariopsis kerguelensis

text: biological

characteristic: replicate

text: between 4 and 6 hr after light on

characteristic: sampling time point

text: Fragilariopsis kerguelensis

characteristic: strain

text: > one period of exponential growth

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Duisburg-Essen

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

text: NORTH

text: 0°C, high light (87-121 µmol/m2s)

text: Fragilariopsis kerguelensis

characteristic: organism

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


characteristic: External Id

text: University of Duisburg-Essen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: block

text: clonal cell culture

characteristic: description

text: exponential growth

text: most southern sample station and thus coldest region of distribution area

characteristic: ecotype

text: illumination

characteristic: environmental stress

text: genotype

characteristic: experimental factor 1

text: temperature

text: SOUTH

text: 6°C, high light (87-121 µmol/m2s)

text: Fragilariopsis kerguelensis

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


text: University of Duisburg-Essen

text: public

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

characteristic: experimental factor 2

text: SOUTH

characteristic: genotype

text: 6°C, low light (15-30 µmol/m2s)

characteristic: growth condition

text: Fragilariopsis kerguelensis

text: biological

characteristic: replicate

text: between 4 and 6 hr after light on

characteristic: sampling time point

text: Fragilariopsis kerguelensis

characteristic: strain

text: > one period of exponential growth

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Duisburg-Essen

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

text: SOUTH

text: 0°C, low light (15-30 µmol/m2s)

text: Fragilariopsis kerguelensis

characteristic: organism

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


characteristic: External Id

text: University of Duisburg-Essen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: block

text: clonal cell culture

characteristic: description

text: exponential growth

characteristic: ecotype

text: illumination

characteristic: environmental stress

text: genotype

characteristic: experimental factor 1

text: temperature

text: SOUTH

text: 0°C, high light (87-121 µmol/m2s)

text: Fragilariopsis kerguelensis

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


text: University of Duisburg-Essen

text: public

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

characteristic: experimental factor 2

text: OMNI

characteristic: genotype

text: 0°C, low light (15-30 µmol/m2s)

characteristic: growth condition

text: Fragilariopsis kerguelensis

text: biological

characteristic: replicate

text: between 4 and 6 hr after light on

characteristic: sampling time point

text: Fragilariopsis kerguelensis

characteristic: strain

text: > one period of exponential growth

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Duisburg-Essen

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: clonal cell culture

text: exponential growth

text: illumination

text: genotype

text: temperature

text: OMNI

text: 0°C, high light (87-121 µmol/m2s)

text: Fragilariopsis kerguelensis

characteristic: organism

text: biological

text: between 4 and 6 hr after light on

text: Fragilariopsis kerguelensis

text: > one period of exponential growth


characteristic: External Id

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF OSLO

characteristic: collection date

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: mycobacterium tuberculosis

characteristic: host scientific name

characteristic: isolate

text: genome

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15194753 of study SRP328999.

text: feces

characteristic: environmental medium

text: China

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

text: This project describes mouse gut metagenome of different environment.

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR15194753_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: CheckM

characteristic: description

text: feces

text: China

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Porphyromonadaceae bacterium

characteristic: organism

text: uncultured Porphyromonadaceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR15194753_bin.11_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: feces

characteristic: environmental medium

text: China

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Candidatus Saccharibacteria bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Candidatus Saccharibacteria;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR15194753_bin.14_metawrap_v1.3_MAG

characteristic: title