characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lactating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 6053-n3 LCFA

characteristic: title


status: PUBLIC

tag: attribute

text: ADM Biopolis

text: public

tag: Namespace:ADM Biopolis

text: Lactating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: 6060-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lactating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: Control

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: title


text: ADM Biopolis

text: public

text: Lactating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7012-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Colostrum

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: Control

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment


text: ADM Biopolis

text: public

text: Colostrum

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

text: 6024-n3 LCFA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Colostrum

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 6033-n3 LCFA


text: ADM Biopolis

text: public

text: Colostrum

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 6053-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Colostrum

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 6060-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Colostrum

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7012-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Gestating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 5128-n3 LCFA


text: ADM Biopolis

text: public

text: Gestating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Gestating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7011-n3 LCFA


text: ADM Biopolis

text: public

text: Gestating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 7035-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Gestating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 7041-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Gestating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7069-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Colostrum

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 7011-n3 LCFA


text: ADM Biopolis

text: public

text: Colostrum

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

text: 5128-n3 LCFA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Colostrum

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7035-n3 LCFA


text: ADM Biopolis

text: public

text: Colostrum

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 7041-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Colostrum

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 7069-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Colostrum

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Milk

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 5128-n3 LCFA


text: ADM Biopolis

text: public

text: Milk

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Milk

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7011-n3 LCFA


text: ADM Biopolis

text: public

text: Milk

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 7035-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Milk

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 7041-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Milk

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7069-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lactating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 5128-n3 LCFA


text: ADM Biopolis

text: public

text: Lactating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lactating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7011-n3 LCFA


text: ADM Biopolis

text: public

text: Lactating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 7035-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Lactating sows feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: sow

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 7041-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Lactating sows feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: sow

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7069-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: Control

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

text: 5128-4944-n3 LCFA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 5128-4946-n3 LCFA


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 5128-4948-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 5128-4949-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7069-4978-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 7069-4979-n3 LCFA


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

text: 7069-4983-n3 LCFA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7069-4989-n3 LCFA


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 7035-4993-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 7035-4994-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7035-4998-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 7035-4999-n3 LCFA


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

text: 7011-5014-n3 LCFA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7011-5016-n3 LCFA


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: 7011-5019-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

text: 7011-5020-n3 LCFA

characteristic: title


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: 7041-5023-n3 LCFA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target subfragment

text: 7041-5027-n3 LCFA


text: ADM Biopolis

text: public

text: Suckling piglets feces

text: animal house

text: piggery

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: n-3 LCFA

characteristic: experimental factor

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body site

text: Pig

characteristic: host common name

text: piglet

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: pig metagenome

characteristic: project name

text: pig metagenome

text: Illumina pair-end

characteristic: sequencing method

text: 16S rRNA

text: 7041-5031-n3 LCFA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADM Biopolis

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Suckling piglets feces

characteristic: description

text: animal house

characteristic: environment (biome)

text: piggery

text: feces

text: n-3 LCFA

text: Spain

text: feces

text: Pig

text: piglet

text: host-associated

text: metagenome

text: pig metagenome

characteristic: organism

text: pig metagenome

text: Illumina pair-end

text: 16S rRNA

characteristic: target gene

text: 7041-5032-n3 LCFA


text: UGent

text: public

text: ArrayExpress

characteristic: broker name

text: CLB-GA

characteristic: cell line

text: neuroblast (sensu Vertebrata)

characteristic: cell type

text: human

characteristic: common name

text: Protocols: 0.5M cells were harvested for CUT&RUN. CUT&RUN was performed using Cutana pA/G-MNase (Epicypher, 15-1016) according to the manufacturer’s protocol. Cells were grown in RPMI1640 medium supplemented with 10% foetal bovine serum, 2mM L-Glutamine and 100 IU/ml penicillin/streptaviding at 37°C in a 5% CO2 humid atmosphere. SH-EP cells were treated with 0.1ug/ml doxycycline for 48h to induce SOX11 over expression. Retrieved genomic DNA was purified with the MinElute PCR purification kit and eluted in 10 mL of buffer EB. Sequencing libraries were prepared with the automated Swift 2S system.

text: neuroblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: wild type

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neuroblast (sensu Vertebrata)

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: adrenal medulla

text: wild type

text: Homo sapiens

characteristic: title


text: UGent

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: NGP

text: neuroblast (sensu Vertebrata)

text: human

characteristic: description

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: wild type

text: Homo sapiens


text: UGent

text: public

text: ArrayExpress

characteristic: broker name

text: SHEP

characteristic: cell line

text: neuroblast (sensu Vertebrata)

characteristic: cell type

text: human

text: neuroblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: SOX11 overexpression

text: Homo sapiens

text: 0.1ug/ml doxycycline for 48h

characteristic: stimulus


1 T1R1Ref

characteristic: ENA-CHECKLIST

text: public

text: 1 T1R1Ref

tag: Namespace:SIR WILLIAM DUNN SCHOOL OF PATHOLOGY UNIVERSITY OF OXFORD

text: human

characteristic: common name

text: 1 T1R1Ref

text: Homo sapiens

text: Homo sapiens

text: 1 T1R1Ref


2 T1R1Sorted

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SIR WILLIAM DUNN SCHOOL OF PATHOLOGY UNIVERSITY OF OXFORD

text: public

text: 2 T1R1Sorted

text: human

text: 2 T1R1Sorted

text: Homo sapiens

text: Homo sapiens

text: 2 T1R1Sorted


3 T1R2Ref

characteristic: External Id

characteristic: INSDC center name

text: public

text: 3 T1R2Ref

text: human

text: 3 T1R2Ref

text: Homo sapiens

text: Homo sapiens

text: 3 T1R2Ref


4 T1R2Sorted

characteristic: INSDC first public

text: public

text: 4 T1R2Sorted

text: human

text: 4 T1R2Sorted

text: Homo sapiens

text: Homo sapiens

text: 4 T1R2Sorted

characteristic: title


5 T2R1Ref

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 5 T2R1Ref

text: human

text: 5 T2R1Ref

text: Homo sapiens

text: Homo sapiens

text: 5 T2R1Ref


6 T2R1Sorted

text: public

characteristic: SRA accession

text: 6 T2R1Sorted

characteristic: Submitter Id

text: human

text: 6 T2R1Sorted

text: Homo sapiens

text: Homo sapiens

text: 6 T2R1Sorted


7 T2R2Ref

text: public

text: 7 T2R2Ref

text: human

text: 7 T2R2Ref

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: 7 T2R2Ref


8 T2R2Sorted

text: public

text: 8 T2R2Sorted

text: human

text: 8 T2R2Sorted

text: Homo sapiens

text: Homo sapiens

text: 8 T2R2Sorted


9 T3R1Ref

text: public

text: 9 T3R1Ref

text: human

text: 9 T3R1Ref

text: Homo sapiens

text: Homo sapiens

text: 9 T3R1Ref


10 T3R1Sorted

text: public

text: 10 T3R1Sorted

text: human

text: 10 T3R1Sorted

text: Homo sapiens

text: Homo sapiens

text: 10 T3R1Sorted


11 T3R2Ref

text: public

text: 11 T3R2Ref

text: human

text: 11 T3R2Ref

text: Homo sapiens

text: Homo sapiens

text: 11 T3R2Ref


12 T3R2Sorted

text: public

text: 12 T3R2Sorted

text: human

text: 12 T3R2Sorted

text: Homo sapiens

text: Homo sapiens

text: 12 T3R2Sorted


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: uncultured bacterium

text: uncultured bacterium


E-MTAB-11918:Sample 1

text: public

text: E-MTAB-11918:Sample 1

tag: Namespace:University College London UK Dementia Research Institute

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

text: Protocols: Cell suspensions were filtered through a 70 μM cell strainer before mixing with Debris Removal Solution. Cells were centrifuged after (300 g for 10 min) and washed with ice-cold FACS buffer (PBS, 2 % FBS, 0.78 mM EDTA). After centrifugation, cells were incubated for 30 min at 4°C with FACS buffer containing Fc block (BD Biosciences) and primary antibody mix. Finally, right before loading the cells on the flow cytometer, cells were stained with DAPI (1:10000). Single cell suspensions were converted to barcoded Drop-seq libraries by using the Chromium Single Cell 3’ Library, Gel Bead & Multiplex Kit and Chip Kit (10X Genomics; Pleasanton, California, USA). cell libraries were prepared using 10X Genomics Chromium Next GEM Single Cell 3’ kit v3.1, according to the manufacturer’s instructions. As sorted PVMs and fibroblasts were in low abundance, we processed the whole sample, while for microglia cells we aimed for 5,000 cells per sample. Libraries were sequenced using an SP flowcell on an Illumina NovaSeq S6000 instrument, with sequencing parameters recommended by 10X Genomics, aiming for 40,000 reads per cell.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: wild type

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-11918:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College London UK Dementia Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11918:Sample 2

text: ArrayExpress

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: Spp1 deficiency

text: Mus musculus

text: male

text: Sample 2


E-MTAB-11918:Sample 3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11918:Sample 3

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer's disease

text: AppNL-F/NL-F

text: Mus musculus

text: Mus musculus

text: hippocampus

text: App expression

text: Mus musculus

text: male

text: Sample 3

characteristic: title


E-MTAB-11918:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11918:Sample 4

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: Alzheimer's disease

characteristic: disease

text: AppNL-F/NL-F x Spp1KO/KO

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: App expression; Spp1 deficiency

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 4


E-MTAB-11918:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11918:Sample 5

text: ArrayExpress

text: perivascular macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: CD45-high; CD11-int; CD206+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: wild type

text: Mus musculus

text: male

text: Sample 5


E-MTAB-11918:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-11918:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: perivascular macrophage

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: CD45-high; CD11-int; CD206+

text: Mus musculus

text: Mus musculus

text: hippocampus

text: Spp1 deficiency

text: Mus musculus

text: male

text: Sample 6

characteristic: title


E-MTAB-11918:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11918:Sample 7

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: adult

text: Alzheimer's disease

characteristic: disease

text: AppNL-F/NL-F

characteristic: genotype

text: CD45-high; CD11-int; CD206+

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: App expression

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 7


E-MTAB-11918:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11918:Sample 8

text: ArrayExpress

text: perivascular macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: Alzheimer's disease

text: AppNL-F/NL-F x Spp1KO/KO

text: CD45-high; CD11-int; CD206+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: App expression; Spp1 deficiency

text: Mus musculus

text: male

text: Sample 8


E-MTAB-11918:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-11918:Sample 9

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: microglial cell

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

text: CD45-int; CD11-int; CX3CR1-high

text: Mus musculus

text: Mus musculus

text: hippocampus

text: wild type

text: Mus musculus

text: male

text: Sample 9

characteristic: title


E-MTAB-11918:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11918:Sample 10

text: ArrayExpress

text: microglial cell

text: house mouse

text: adult

text: normal

characteristic: disease

characteristic: genotype

text: CD45-int; CD11-int; CX3CR1-high

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: hippocampus

characteristic: organism part

text: Spp1 deficiency

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 10


E-MTAB-11918:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11918:Sample 11

text: ArrayExpress

text: microglial cell

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: Alzheimer's disease

text: AppNL-F/NL-F

text: CD45-int; CD11-int; CX3CR1-high

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hippocampus

text: App expression

text: Mus musculus

text: male

text: Sample 11


E-MTAB-11918:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-11918:Sample 12

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: microglial cell

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer's disease

text: AppNL-F/NL-F x Spp1KO/KO

text: CD45-int; CD11-int; CX3CR1-high

text: Mus musculus

text: Mus musculus

text: hippocampus

text: App expression; Spp1 deficiency

text: Mus musculus

text: male

text: Sample 12

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


text: TUG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CalB expression strain based on K. phaffii strain BSYBG10, harbouring an integration of plasmid 3S1K_CalB into the AOX1 locus

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TUG

text: public

text: Strain based on BSYBG10, harboring an integration of a Hygromycin resistance cassette at the 3’ end of CHR3

text: Komagataella phaffii CBS 7435

characteristic: organism

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CalB expression strain based on K. phaffii strain BSYBG11, harbouring a random integration of plasmid pPpT4_UPP_CalB

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using YPK1_gRNA3

characteristic: description

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using NCE2_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using ROM_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using FKS1_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and YPK1_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and FKS1_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and NCE2_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using NCE2_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using YPK1_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and FKS1_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and NCE2_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and YPK1_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of K. phaffii 3S1K_Calb_int_AOX1 transformed using no gRNA

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using no gRNA

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies not growing on Hygromycine plates of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Hyg_end_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Hyg_end_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Chr_end_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Chr_end_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Mixture of 5 colonies of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Chr_end_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony not growing on Hygromycine plates of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Hyg_end_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony not growing on Hygromycine plates of KP_Chr3NE_HygR transformed using Hyg_start_gRNA1 and Hyg_end_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii UPP-C transformed using BGS5_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii UPP-C transformed using BGS7_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii UPP-C transformed using BGS7_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii UPP-C transformed using BGS12_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii UPP-C transformed using BGS12_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii UPP-C transformed using BGS13_gRNA1

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and NCE2_gRNA3

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: TUG

text: public

text: Single colony of K. phaffii 3S1K_Calb_int_AOX1 transformed using DSPP_gRNA2 and FKS1_gRNA2

text: Komagataella phaffii CBS 7435

text: Komagataella phaffii CBS 7435

text: CBS 7435


text: Infravec

text: public

text: Hyalomma marginatum

characteristic: common name

text: The Crimean-Congo hemorrhagic fever virus (CCHFV) (Bunyaviridae, Nairovirus) is mainly transmitted by the Hyalomma marginatum tick and has been increasingly detected in Europe.Whole genome sequencing of this tick vector will provide the first reference genome for this disease vector and will pave the way for comprehensive transcriptomic and proteomic studies.

characteristic: infravec request number

text: Hyalomma marginatum marginatum

text: Hyalomma marginatum marginatum

characteristic: study accession

text: Whole genome sequencing of Hyalomma marginatum, the main vector of the Crimean-Congo hemorrhagic fever virus.


characteristic: ENA-LAST-UPDATE

text: Massachusetts Institute of Technology

text: public

tag: Namespace:Massachusetts Institute of Technology

text: Sample of MIT9303 strain grown on AMP1 media taken on day 1

text: Prochlorococcus marinus str. MIT 9303

text: Prochlorococcus marinus str. MIT 9303

text: AMP1 day 1

characteristic: title


characteristic: External Id

text: Massachusetts Institute of Technology

text: public

text: Sample of MIT9303 strain grown on AMP1+chitosan media taken on day 1

text: Prochlorococcus marinus str. MIT 9303

text: Prochlorococcus marinus str. MIT 9303

text: AMP1+chitosan day 1


text: Massachusetts Institute of Technology

characteristic: INSDC center name

text: public

text: Sample of MIT9303 strain grown on AMP1 media taken on day 3

text: Prochlorococcus marinus str. MIT 9303

text: Prochlorococcus marinus str. MIT 9303

text: AMP1 day 3


text: Massachusetts Institute of Technology

characteristic: INSDC first public

text: public

text: Sample of MIT9303 strain grown on AMP1+chitosan media taken on day 3

text: Prochlorococcus marinus str. MIT 9303

text: Prochlorococcus marinus str. MIT 9303

text: AMP1+chitosan day 3


text: Massachusetts Institute of Technology

characteristic: INSDC last update

text: public

text: Sample of MIT9313 strain grown on AMP1 media taken on day 1

text: Prochlorococcus marinus str. MIT 9313

text: Prochlorococcus marinus str. MIT 9313

text: AMP1 day 1


text: Massachusetts Institute of Technology

text: public

characteristic: INSDC status

text: Sample of MIT9313 strain grown on AMP1+chitosan media taken on day 1

text: Prochlorococcus marinus str. MIT 9313

text: Prochlorococcus marinus str. MIT 9313

text: AMP1+chitosan day 1


text: Massachusetts Institute of Technology

text: public

text: Sample of MIT9313 strain grown on AMP1 media taken on day 3

text: Prochlorococcus marinus str. MIT 9313

text: Prochlorococcus marinus str. MIT 9313

text: AMP1 day 3


text: Massachusetts Institute of Technology

text: public

text: Sample of MIT9313 strain grown on AMP1+chitosan media taken on day 3

text: Prochlorococcus marinus str. MIT 9313

text: Prochlorococcus marinus str. MIT 9313

text: AMP1+chitosan day 3


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:491-117880

tag: Namespace:Friedrich-Loeffler-Institut, Institute of Epidemiology

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Anas platyrhynchos

characteristic: host scientific name

text: E. coli

characteristic: isolate

text: fecal sample

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Friedrich-Loeffler-Institut, Institute of Epidemiology

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:491-117881

characteristic: Submitter Id

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:491-117882

text: Germany

text: wildlife

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:491-117883

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: External Id

text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117884

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117885

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117886

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117887

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117888

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117889

characteristic: collection date

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117890

text: Germany

characteristic: geographic location (country and/or sea)

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117891

text: Germany

text: Anas platyrhynchos

characteristic: host scientific name

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117892

text: Germany

text: Anas platyrhynchos

text: E. coli

characteristic: isolate

text: fecal sample

text: Escherichia coli

text: Escherichia coli


text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117893

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: public

text: ena-SAMPLE-TAB-11-07-2022-07:57:11:492-117894

text: Germany

text: Anas platyrhynchos

text: E. coli

text: fecal sample

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: E-MTAB-91561657524261:WE_2-3h_Input_rep1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: Wildtype Drosophila melanogaster (Oregon R) flies were grown in population cages at 25 degr. Independent collections of staged embryos were performed for each biological replicate. The collected embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 1.8 % formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. Specifically for CP190 ChIPs, the same collection procedure was used, but using a final 3.0 % concentration of formaldehyde, for 30 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry and frozen in liquid nitrogen. A small number of embryos from each collections was set aside to stage each collection. Chromatin Preparation Step : Nuclei were extracted from the frozen embryos by Dounce homogenization and differential centrifugation (Cell lysis buffer: 5mM Hepes, pH 8, 85mM KCl, 0.5% NP40 + protease inhibitors). The nuclei were lyzed in 50mM Hepes, pH 8, 10mM EDTA?Na2, 0.5% N-Laurylsarkosin + protease inhibitors at RT for 20 min and the chromatin was sheared to ca. 250 bp fragments using a Bioruptor sonicator waterbath (Diagenode). After clearing the chromatin by centrifugation (20.000g at 4 degr for 10 min), aliquots were frozen at -80 degr. Chromation IP Step: 5 micrograms of chromatin were mixed with TE and cold IP dilution buffer. 1% Input was isolated at this step. The chromatin was incubated with the appropriate antibody overnight on a rotating wheel. Then, the antibody/antigen complexes were incubated with Protein A/G Beads, followed by multiple washes. The DNA was eluted after RNAase treatment, protease digestion and phenol chloroform extraction. For ChIP NGS library prep the following kit was used: NEBNext Ultra II DNA Library Prep Kit for Illumina E7645S

characteristic: description

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

characteristic: organism part

text: Drosophila melanogaster

text: mixed

characteristic: sex

text: OregonR

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

text: wild type genotype

text: egg laying

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

text: OregonR

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: E-MTAB-91561657524261:Input_CP190_NC14_new_1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

characteristic: description

text: wild type genotype

text: egg laying

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole organism

text: Drosophila melanogaster

text: mixed

text: OregonR


text: MPIPZ

text: public

text: ArrayExpress

text: Asian cultivated rice

text: indica

characteristic: cultivar

text: Protocols: Leaves were removed from plants and stored at -80 C until DNA extraction Greenhouse supplemented with additional light NucleoMag Plant Kit (Macherey and Nagel, P/O 744400.4) on a robotic device (KingFisher, Thermo) TPase-based DNA library (>95 samples)

text: sporophyte vegetative stage

characteristic: developmental stage

characteristic: genotype

text: Oryza sativa

text: Oryza sativa

text: leaf

characteristic: organism part

text: Oryza sativa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIPZ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Asian cultivated rice

text: indica/japonica

text: sporophyte vegetative stage

text: Oryza sativa

text: Oryza sativa

text: leaf

text: Oryza sativa


text: MPIPZ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Asian cultivated rice

text: indica/japonica

text: sporophyte vegetative stage

text: BRS CIRAD-302

text: Oryza sativa

text: Oryza sativa

text: leaf

text: Oryza sativa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MPIPZ

text: public

text: ArrayExpress

text: Asian cultivated rice

text: indica/japonica

text: sporophyte vegetative stage

text: F2 hybrid

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: leaf

text: Oryza sativa

characteristic: title


text: Friedrich-Loeffler-Institut, Institute of Epidemiology

text: public

text: ena-SAMPLE-TAB-11-07-2022-10:37:22:930-107

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: Anas platyrhynchos

characteristic: host scientific name

text: E. coli

characteristic: isolate

text: fecal sample

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


E-MTAB-11940:Sample 1

characteristic: ENA-LAST-UPDATE

text: Baker Herat and Diabetes Institute

text: public

text: E-MTAB-11940:Sample 1

tag: Namespace:Baker Herat and Diabetes Institute

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: nonmyocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: For single-cell RNA sequencing (scRNAseq) cardiac single cell suspensions were prepared following a modified Langendorff approach described in Farrugia et al., 2021. Briefly, after euthanasia, the thoracic cavity was opened and the inferior vena cava was ligated, before injecting 7mL of cold ‘EDTA buffer’ (Ackers-Johnson et al., 2016; Farrugia et al., 2021) into the right ventricle for perfusion. Following perfusion, hearts were gently lifted and clamped at the aorta using a haemostat. The hearts were subsequently cut away from the thoracic cavity and mounted onto a 3D-printed platform, such that the apex of each heart was facing up-ward (Farrugia et al., 2021; McLellan et al., 2020). Hearts were then perfused with EDTA buffer at 6mL/min for ~5 minutes. Once hearts had sufficiently cleared with any residual blood, the perfusion rate was reduced to 4mL/min and the perfusate was changed to a collagenase and protease digestion buffer (Ackers-Johnson et al., 2016), for ~15 minutes. All buffers were maintained at 37°C throughout the perfusion process. Hearts were then further dissociated by gently separating the tissue with forceps before incubating the cell suspension for a further 10-minutes, at 37°C. Cardiac non-myocytes were separated from cardiomyocytes and other cellular debris and subject to antibody/viability-dye staining. Stained non-myocytes consequently underwent fluorescence-activated cell sorting (FACS, BD FACS Aria™ Fusion Flow Cytometer) as described previously (McLellan et al., 2020; Skelly et al., 2018). Live (SYTOX™ Green-), metabolically active (Vybrant™ DyeCycle™ Ruby+) cardiac non-myocyte cells were sorted into endothelial cells (CD31+), leukocytes (CD45+), and resident mesenchymal cells (CD31-CD45-). Major non-myocyte cell populations were manually counted using a haemocytometer, after which samples were pooled based on their genotype (db/h or db/db). Each pooled sample consisted of ~12,000 cells (ECs; ~10%, RMCs; ~90%) when loaded into the 10X Chromium controller for single cell library preparation (Chromium Single Cell 3’ v2, lane 1: pooled db/db non-myocytes [n=4], lane 2: pooled db/h non-myocytes [n=3]). Individual cells were captured and lysed within the 10X controller, after which cDNA was synthesised and amplified for a total of 12 cycles

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Leprdb/+

characteristic: genotype

text: SYTOX Green-; Vybrant DyeCycle Ruby+

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-11940:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Baker Herat and Diabetes Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11940:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: nonmyocyte

text: house mouse

text: adult

text: type 2 diabetes mellitus

text: Leprdb/db

text: SYTOX Green-; Vybrant DyeCycle Ruby+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: Sample 2

characteristic: title


characteristic: ENA-LAST-UPDATE

text: IAI - Institu des Agents Infectieux

text: public

tag: Namespace:IAI - Institu des Agents Infectieux

characteristic: collection date

text: cultured strain

characteristic: description

text: France

characteristic: geographic location (country and-or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: nasal carriage

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IAI - Institu des Agents Infectieux

text: public

text: cultured strain

text: France

text: not provided

text: Homo sapiens

text: blood culture

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: IAI - Institu des Agents Infectieux

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: cultured strain

text: New Caledonia

text: not provided

text: Homo sapiens

text: sputum culture

text: Staphylococcus argenteus

text: Staphylococcus argenteus


text: IAI - Institu des Agents Infectieux

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: cultured strain

text: New Caledonia

text: not provided

text: Homo sapiens

text: blood culture

text: Staphylococcus argenteus

characteristic: organism

text: Staphylococcus argenteus

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: malignant cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cells were cultured in RPMI 1640 medium (11875093, Thermo Fisher Scientific) containing 10 % FBS (16140071, Thermo Fisher Scientific) and 1 % penicillin-streptomycin (15140122, Thermo Fisher Scientific) in 5 % CO2 at 37 °C in a humidified incubator. Cells were seeded at a density of 200000 cells/mL in 5 mL of the complete medium and treated with 10 μM UZH2 or DMSO (5%) for 16 h. Before collection, cells were washed twice with PSB. Cell pellets were collected and total RNA was immediately isolated. Total RNA was isolated with RNeasy Kits (74104, QIAGEN). mRNA enrichment and purification was performed with Oligo dT selection. The RNA was fragmented and reverse transcription was done using random N6 primers (second-strand cDNA synthesis with dUTP instead of dTTP).This was followed end repair, add A and adaptor ligation. PCR was performed, followed by single strand separation and cyclization. The final step was the DNA nanoball synthesis.

characteristic: description

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: malignant cell

text: human

text: adult

text: acute myeloid leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mammalian liver samples were extracted post-mortem, perfused with PBS, and flash-frozen in liquid nitrogen. In almost all cases, tissues were prepared immediately post-mortem (typically within an hour) to maximize experimental quality, and were kept on ice until processed to minimize potential DNA degradation. Total genomic DNA was extracted from each sample with commercial reagents and following manufacturer guidelines (Qiagen, DNAEasy Blood&Tissue kit. Mammalian DNA was subjected to bisulfite conversion using Epimark CT conversion kit using Agilent and/or Epimark polymerase.

text: adult

text: pool of 4 individuals

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


text: EMBL-EBI

text: public

text: ArrayExpress

text: Norway rat

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: pool of 3 individuals

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

characteristic: organism part

text: Rattus norvegicus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL-EBI

text: public

text: not available

text: ArrayExpress

text: human

text: adult

text: pool of 4 individuals

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: sex


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2.5 and 1 and 1

text: ArrayExpress

text: dog

text: adult

text: pool of 3 individuals

text: Canis lupus familiaris

text: Canis lupus familiaris

text: liver

text: Canis lupus familiaris

text: male


characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not available and 18 and 5 and 11

characteristic: age

text: ArrayExpress

text: Rhesus monkey

text: adult

text: pool of 4 individuals

text: Macaca mulatta

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male, male, male, female


text: IAI - Institu des Agents Infectieux

text: public

characteristic: collection date

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: sputum

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Cambridge

characteristic: INSDC center name

text: public

tag: Namespace:University of Cambridge

text: UKHSA

characteristic: collecting institution

text: Martin Curran

characteristic: collector name

text: Adenovirus F41

characteristic: description

text: United Kingdom

text: East of England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: Not provided

characteristic: host subject id

text: not provided

text: blank sample

text: blank sample


characteristic: ENA-LAST-UPDATE

text: IAI - Institu des Agents Infectieux

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: cultured strain

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: bone and joint infection

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

text: public

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: foxtail millet

characteristic: common name

text: Setaria italica

characteristic: organism

text: Setaria italica

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Universita degli studi di Milano

text: public

tag: Namespace:Universita degli studi di Milano

text: microbiome from Eruca sativa and Diplotaxis tenuifolia grown with traditional farming method: Conventional

characteristic: description

text: Eruca vesicaria subsp. sativa

text: Eruca vesicaria subsp. sativa


text: Universita degli studi di Milano

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: microbiome from Eruca sativa and Diplotaxis tenuifolia grown with traditional farming method: Integrated

text: Eruca vesicaria subsp. sativa

text: Eruca vesicaria subsp. sativa


text: Universita degli studi di Milano

text: public

characteristic: INSDC status

characteristic: SRA accession

text: microbiome from Eruca sativa and Diplotaxis tenuifolia grown with traditional farming method: Not Washed

text: Eruca vesicaria subsp. sativa

text: Eruca vesicaria subsp. sativa


text: Universita degli studi di Milano

text: public

characteristic: Submitter Id

text: microbiome from Eruca sativa and Diplotaxis tenuifolia grown with traditional farming method: Organic

text: Eruca vesicaria subsp. sativa

text: Eruca vesicaria subsp. sativa


text: Universita degli studi di Milano

text: public

text: microbiome from Eruca sativa and Diplotaxis tenuifolia grown with vertical farming method: Vertical

text: Eruca vesicaria subsp. sativa

text: Eruca vesicaria subsp. sativa


text: Istituto di Ricerche Farmacologiche \Mario Negri\ IRCCS

text: public

text: E-MTAB-11949:37_Caco2_Transwell_S9_R1_001.fastq.gz

tag: Namespace:Istituto di Ricerche Farmacologiche \"Mario Negri\" IRCCS

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: intestinal epithelial cell

characteristic: cell type

text: human

text: Protocols: Collection of 5-10 million cells in PDS, and resuspension of the pellet in a buffer. Protocol: miRNeasy Mini Kit TruSeq Stranded Total RNA Sample Preparation Guide

text: wild type genotype

characteristic: genotype

text: Transwell

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: intestinal epithelium

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11949:38_Caco2_Transwell_S10_R1_001.fastq.gz

text: ArrayExpress

text: intestinal epithelial cell

text: human

text: wild type genotype

text: Transwell

text: Homo sapiens

text: Homo sapiens

text: intestinal epithelium

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11949:39_Caco2_Transwell_S11_R1_001.fastq.gz

text: ArrayExpress

text: intestinal epithelial cell

text: human

characteristic: common name

text: wild type genotype

text: Transwell

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: intestinal epithelium

text: Homo sapiens

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11949:40_Caco2_Minerva_S12_R1_001.fastq.gz

text: ArrayExpress

text: intestinal epithelial cell

text: human

characteristic: description

text: wild type genotype

text: Minerva

text: Homo sapiens

text: Homo sapiens

text: intestinal epithelium

text: Homo sapiens


text: public

characteristic: SRA accession

text: E-MTAB-11949:41_Caco2_Minerva_S13_R1_001.fastq.gz

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: intestinal epithelial cell

text: human

text: wild type genotype

text: Minerva

text: Homo sapiens

text: Homo sapiens

text: intestinal epithelium

text: Homo sapiens


text: public

text: E-MTAB-11949:42_Caco2_Minerva_S14_R1_001.fastq.gz

text: ArrayExpress

text: intestinal epithelial cell

characteristic: cell type

text: human

text: wild type genotype

characteristic: genotype

text: Minerva

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: intestinal epithelium

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Infravec

characteristic: INSDC center name

text: public

text: Rhipicephalus bursa

text: Rhipicephalus bursa is a multi-host tick widely distributed in the Mediterranean region having cattle, sheep, and goats as its primary hosts but can occasionally be found in other vertebrates including humans. This tick is the main vector of Babesia ovis, a highly pathogenic organism, that infects red blood cells of its vertebrate host but it transmits other pathogens such as Rickettsia spp. and Anaplasma spp.. A deeper insight into genomic data on R. bursa will provide fundamental information that can be interrogated to study key elements of tick-host-parasite interactions.

characteristic: infravec request number

text: Rhipicephalus bursa

text: Rhipicephalus bursa

characteristic: study accession

text: Genome sequence of Rhipicephalus bursa, a major vector of Babesia ovis.


characteristic: ENA-LAST-UPDATE

text: Radboud University Nijmegen

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Radboud University Nijmegen

text: Ammonium oxidation and acidotolerant AOB growing under acidic conditions and high TN concentrations was investigated. Starting with activated sludge (AS) from a urine nitrification reactor, acidotolerant AOB were enriched with source-separated urine at a pH value of 5 and TN concentrations above 1000 mg N L-1. The predominant AOB specie was determined, and the effect of various environmental conditions on the acidotolerant AOB were tested. In particular, the long-term effect of pH values between 5 to 7 on the activity of acidotolerant AOB was investigated, which is important in cases where acidotolerant AOB should be avoided in the first place.

text: Candidatus Nitrosacidococcus sp. I8

characteristic: organism

text: Candidatus Nitrosacidococcus sp. I8

text: Acid-tolerant ammonia oxidizers allow for fast but unstable nitrification at low pH values

characteristic: title


text: Utrecht university

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:853-10

tag: Namespace:Utrecht university

characteristic: Submitter Id

text: Litter sample receiving no microbial inocula

characteristic: description

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-11

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-12

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-13

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-14

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-15

text: Litter sample inoculated 41 bacterial strains

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-16

text: synthetic metagenome

text: synthetic metagenome


text: Utrecht university

text: public

text: ena-SAMPLE-TAB-16-07-2022-02:45:02:856-17

text: synthetic metagenome

text: synthetic metagenome