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text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Diana Pilvar

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characteristic: host scientific name

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characteristic: INSDC center name

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characteristic: SRA accession

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text: Servicio de Microbiologia, Plataforma Provincial de Almería, Almería, Spain

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text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

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text: Homo Sapiens

text: not provided

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text: not provided

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: title


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text: Servicio Andaluz de Salud, Andalusia, Spain

characteristic: collection date

text: not provided

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characteristic: host common name

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: geographic location (latitude)

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text: Clinical Bioinformatics Area

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characteristic: title


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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: Human

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text: not provided

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: host subject id

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text: AND30327, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

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text: ena-upload-cli

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characteristic: geographic location (country and/or sea)

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: geographic location (latitude)

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characteristic: host scientific name

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text: Clinical Bioinformatics Area

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text: ena-upload-cli

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: ENA-CHECKLIST

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text: ena-upload-cli

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text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

text: Human

text: not provided

text: Homo Sapiens

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characteristic: host subject id

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text: AND30333, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


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characteristic: INSDC center name

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text: ena-upload-cli

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characteristic: geographic location (country and/or sea)

text: Human

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Clinical Bioinformatics Area

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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characteristic: title


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characteristic: SRA accession

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: Human

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characteristic: host scientific name

text: not provided

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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characteristic: collector name

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text: Human

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characteristic: host subject id

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characteristic: organism

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text: AND30339, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: SRA accession

text: ena-upload-cli

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text: not provided

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characteristic: geographic location (country and/or sea)

text: Human

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text: Homo Sapiens

text: not provided

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characteristic: ENA-CHECKLIST

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characteristic: External Id

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text: not provided

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text: not provided

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text: Human

text: not provided

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text: not provided

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: public

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text: ena-upload-cli

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characteristic: host subject id

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characteristic: organism

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characteristic: title


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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

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characteristic: SRA accession

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text: not provided

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characteristic: host common name

text: not provided

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

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text: not provided

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Clinical Bioinformatics Area

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text: ena-upload-cli

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characteristic: collector name

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text: not provided

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text: Human

text: not provided

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characteristic: host subject id

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text: active surveillance in response to outbreak

characteristic: sample capture status

text: AND30345, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

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characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

characteristic: host common name

text: not provided

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text: Homo Sapiens

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collecting institution

text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

characteristic: description

text: Spain

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

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characteristic: collector name

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text: Human

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text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

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characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30348, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30349, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: AND30350, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

characteristic: collector name

text: Spain

text: not provided

text: not provided

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30351, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30352, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: AND30353, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

characteristic: collector name

text: Spain

text: not provided

text: not provided

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30354, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Universitario San Cecilio, Granada, Spain

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30355, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: AND30356, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

characteristic: collector name

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30357, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30358, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: active surveillance in response to outbreak

text: AND30359, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio Andaluz de Salud, Andalusia, Spain

text: not provided

characteristic: collector name

text: Spain

text: not provided

text: not provided

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30360, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30361, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: AND30362, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Complejo Hospitalario de Jaen, Jaen, Spain

text: not provided

characteristic: collector name

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30363, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30364, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: AND30365, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

characteristic: collector name

text: Spain

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

text: AND30366, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND30367, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

text: not provided

characteristic: description

text: Spain

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

text: not provided

text: AND30368, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Oesophagus

characteristic: ArrayExpress-PHENOTYPE

text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Female

characteristic: GENDER

text: SC

text: public

text: Oesophagus

characteristic: PHENOTYPE

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: Oesophagus

text: male

text: Mus musculus

text: Male

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Oesophagus

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339297

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Methanobrevibacter sp.

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Methanobrevibacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-016__bin7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339286

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Methanosphaera cuniculi

characteristic: organism

text: MicroReset Rabbit

text: Methanosphaera cuniculi

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-003-2__bin24

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339307

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Bifidobacterium magnum

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Bifidobacterium magnum

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-026__bin46


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339301

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Microbacterium sp.

characteristic: organism

text: MicroReset Rabbit

text: uncultured Microbacterium sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-020__bin54

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339312

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Corynebacterium casei

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Corynebacterium casei

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-032__bin121


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Candidatus Corynebacterium faecigallinarum

characteristic: organism

text: MicroReset Rabbit

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-032__bin24

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339284

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Atopobiaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Atopobiaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-001__bin20


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Atopobiaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Atopobiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-003-2__bin18

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339293

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Atopobiaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Atopobiaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-012__bin39


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Atopobiaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Atopobiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-012__bin77

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339306

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Atopobiaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Atopobiaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-025__bin26


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Atopobiaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Atopobiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-032__bin92

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339290

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Eggerthellaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Eggerthellaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-008__bin35


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Eggerthellaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Eggerthellaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-012__bin19

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339299

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Eggerthellaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Eggerthellaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-018__bin42


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339300

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Bacteroides sp.

characteristic: organism

text: MicroReset Rabbit

text: uncultured Bacteroides sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-019__bin16

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339302

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Bacteroides graminisolvens

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Bacteroides graminisolvens

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-021__bin57


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339285

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Mediterranea massiliensis

characteristic: organism

text: MicroReset Rabbit

text: Mediterranea massiliensis

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-002__bin84

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339310

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroides sp.

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroides sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-030__bin33


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Bacteroides thetaiotaomicron

characteristic: organism

text: MicroReset Rabbit

text: Bacteroides thetaiotaomicron

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-030__bin54

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Bacteroides uniformis

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Bacteroides uniformis

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-021__bin24


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339293

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Phocaeicola dorei

characteristic: organism

text: MicroReset Rabbit

text: Phocaeicola dorei

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-012__bin26

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339284

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Phocaeicola sartorii

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Phocaeicola sartorii

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-001__bin32


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Phocaeicola sp.

characteristic: organism

text: MicroReset Rabbit

text: uncultured Phocaeicola sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-001__bin39

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Phocaeicola sp.

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Phocaeicola sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-021__bin16


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-021__bin4

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339312

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Butyricimonas virosa

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Butyricimonas virosa

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-032__bin52


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Odoribacter splanchnicus

characteristic: organism

text: MicroReset Rabbit

text: Odoribacter splanchnicus

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-001__bin3

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339292

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-011__bin93


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339299

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-018__bin57

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339303

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-022__bin49


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339297

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-016__bin52

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339308

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-027__bin38


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-018__bin45

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-018__bin5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339306

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: Candidatus Homeothermus arabinoxylanisolvens

characteristic: organism

text: MicroReset Rabbit

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-025__bin39

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339293

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: Muribaculum gordoncarteri

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: Muribaculum gordoncarteri

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-012__bin65


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

text: MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339302

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculum sp.

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculum sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-021__bin65

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339292

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-011__bin11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339307

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-026__bin85

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339285

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-002__bin86


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339304

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-023__bin60

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339299

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Muribaculaceae bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-018__bin82


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

text: MicroReset Rabbit

text: uncultured Muribaculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-026__bin112

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.3

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-021__bin55


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.3

characteristic: assembly software

characteristic: binning parameters

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

text: checkm v1.1.3

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339286

text: feces

text: France

text: metagenome-assembled genome

text: rabbit gut

text: host-associated habitat

text: rabbit gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

text: MicroReset Rabbit

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: Lapin-003-2__bin44

characteristic: title


characteristic: ENA-CHECKLIST

text: INRA-META

text: public

text: SPAdes 3.15.3

text: MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module

text: MetaBAT v2.12.1, SemiBin, metaWRAP v1.3

text: host-associated habitat

characteristic: collection date

characteristic: completeness score

text: checkm v1.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample ERS14339305

characteristic: description

text: feces

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: rabbit gut

text: host-associated habitat

characteristic: local environmental context

text: rabbit gut metagenome

characteristic: metagenomic source

text: uncultured Alistipes sp.

text: MicroReset Rabbit

characteristic: project name

characteristic: sample derived from

text: uncultured Alistipes sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: Lapin-024__bin58