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characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

text: feces

characteristic: host body product

text: feces

characteristic: host body site

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host weight

text: years

text: cm

text: kg

text: U/L

text: U/L

text: not provided

text: mg/dL

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: White

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Non-T1D + overweight

text: OH

text: H

text: O

text: no

text: no

text: no

text: stool swab

characteristic: description

text: FALSE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Non Hispanic

text: restricted access

characteristic: geo loc name

text: no

text: feces

text: feces

text: feces

text: child

text: Homo sapiens

characteristic: host taxid

text: years

text: cm

text: kg

text: U/L

text: U/L

text: not provided

text: mg/dL

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

characteristic: latitude

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: yes

text: yes

text: no

text: no

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: metformin

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: female

text: no

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Non-T1D + overweight

text: OH

text: H

text: O

characteristic: anonymized name

text: no

text: no

text: no

text: stool swab

text: FALSE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

text: human-gut

text: feces

text: Non Hispanic

characteristic: ethnicity

text: restricted access

text: no

characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

text: feces

characteristic: host body product

text: feces

characteristic: host body site

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: years

text: cm

text: kg

text: U/L

text: U/L

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

text: restricted access

characteristic: longitude

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: White

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Non-T1D + overweight

text: OH

text: H

text: O

text: no

text: no

text: no

text: stool swab

characteristic: description

text: FALSE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Hispanic

text: restricted access

characteristic: geo loc name

text: no

text: feces

text: feces

text: feces

text: child

text: Homo sapiens

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

text: not provided

text: U/L

text: not provided

text: U/L

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: mg/dL

text: mm Hg

text: not provided

text: mg/dL

text: restricted access

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: yes

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: miralax

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: male

text: yes

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Non-T1D + overweight

text: OH

text: H

text: O

characteristic: anonymized name

text: no

text: no

text: no

text: stool swab

text: FALSE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

text: human-gut

text: feces

text: Hispanic

characteristic: ethnicity

text: restricted access

text: no

characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

text: feces

characteristic: host body product

text: feces

characteristic: host body site

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: years

text: cm

text: kg

text: U/L

text: U/L

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

characteristic: latitude

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Non-T1D + overweight

text: OH

text: H

text: O

text: no

text: no

text: no

text: stool swab

characteristic: description

text: FALSE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Non Hispanic

text: restricted access

characteristic: geo loc name

text: no

text: feces

text: feces

text: feces

text: child

text: Homo sapiens

characteristic: host taxid

text: years

text: cm

text: kg

text: U/L

text: U/L

text: not provided

text: mg/dL

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

text: restricted access

characteristic: longitude

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: yes

text: yes

text: no

text: no

text: yes

text: no

text: no

text: yes

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: not provided

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: Black

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Non-T1D + overweight

text: OH

text: H

text: O

characteristic: anonymized name

text: no

text: yes

text: no

text: stool swab

text: FALSE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

text: human-gut

text: feces

text: Non Hispanic

characteristic: ethnicity

text: restricted access

text: no

characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

text: feces

characteristic: host body product

text: feces

characteristic: host body site

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host weight

text: years

text: cm

text: kg

text: U/L

text: U/L

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: yes

text: no

text: no

text: no

text: no

text: human gut metagenome

text: Bardet-Biedl

text: RCHSD biorepository

text: TRUE

text: Asian

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Non-T1D + overweight

text: OH

text: H

text: O

text: no

text: no

text: no

text: stool swab

characteristic: description

text: FALSE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Hispanic

text: restricted access

characteristic: geo loc name

text: no

text: feces

text: feces

text: feces

text: child

text: Homo sapiens

characteristic: host taxid

text: years

text: cm

text: kg

text: U/L

text: U/L

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

characteristic: latitude

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: yes

text: yes

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: White

text: stool

text: human gut metagenome

text: female

text: no

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Non-T1D + overweight

text: OH

text: H

text: O

characteristic: anonymized name

text: no

text: no

text: no

text: stool swab

text: FALSE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

text: human-gut

text: feces

text: Hispanic

characteristic: ethnicity

text: restricted access

text: no

characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

text: feces

characteristic: host body product

text: feces

characteristic: host body site

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: years

text: cm

text: kg

text: U/L

text: U/L

text: not provided

text: mg/dL

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

text: restricted access

characteristic: longitude

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: White

text: stool

text: human gut metagenome

text: female

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Non-T1D + overweight

text: OH

text: H

text: O

text: no

text: no

text: no

text: stool swab

characteristic: description

text: FALSE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Hispanic

text: restricted access

characteristic: geo loc name

text: no

text: feces

text: feces

text: feces

text: child

text: Homo sapiens

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

text: U/L

text: U/L

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

text: restricted access

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: cimetidine

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: female

text: no

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Non-T1D + overweight

text: OH

text: H

text: O

characteristic: anonymized name

text: no

text: no

text: no

text: stool swab

text: FALSE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

text: human-gut

text: feces

text: Non Hispanic

characteristic: ethnicity

text: restricted access

text: no

characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

text: feces

characteristic: host body product

text: feces

characteristic: host body site

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: years

text: cm

text: kg

text: not provided

text: U/L

text: not provided

text: U/L

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: not provided

text: mm Hg

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: not provided

text: mm Hg

text: not provided

text: mg/dL

text: restricted access

characteristic: latitude

text: restricted access

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

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text: no

text: no

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text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: not provided

text: White

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Non-T1D + overweight

text: OH

text: H

text: O

text: no

text: no

text: no

text: stool swab

characteristic: description

text: FALSE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Hispanic

text: restricted access

characteristic: geo loc name

text: no

text: feces

text: feces

text: feces

text: child

text: Homo sapiens

characteristic: host taxid

text: years

text: cm

text: kg

text: not provided

text: U/L

text: not provided

text: U/L

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: not provided

text: mm Hg

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: not provided

text: mm Hg

text: not provided

text: mg/dL

text: restricted access

text: restricted access

characteristic: longitude

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: not provided

text: Other

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Non-T1D + overweight

text: OH

text: H

text: O

characteristic: anonymized name

text: no

text: no

text: no

text: stool swab

text: FALSE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

text: human-gut

text: feces

text: Hispanic

characteristic: ethnicity

text: restricted access

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characteristic: host age

text: feces

characteristic: host body habitat

characteristic: host body mass index

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characteristic: host body product

text: feces

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text: mg/dL

text: mg/dL

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text: mm Hg

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text: mg/dL

text: mg/dL

text: mg/dL

text: mm Hg

text: mg/dL

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: female

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: O

text: no

text: no

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text: stool swab

characteristic: description

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text: Host-asssociated

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text: U/L

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: yes

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: male

text: no

text: no

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

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characteristic: anonymized name

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text: urban biome

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text: not provided

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text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

text: not provided

text: mg/dL

text: restricted access

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characteristic: longitude

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

text: human gut metagenome

text: congenital hypothyroid

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: female

text: no

text: no

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UCSDMI

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text: no

text: no

text: stool swab

characteristic: description

text: FALSE

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text: Host-asssociated

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text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

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text: feces

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characteristic: geo loc name

text: no

text: feces

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text: kg

text: U/L

text: U/L

text: mg/dL

text: mg/dL

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text: mm Hg

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text: mg/dL

text: mg/dL

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text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

text: human gut metagenome

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text: yes

text: months

text: U/kg/d

text: no


text: UCSDMI

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text: stool swab

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text: Host-asssociated

text: Animal

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text: urban biome

text: human associated habitat

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characteristic: ethnicity

text: restricted access

text: no

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text: feces

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text: kg

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text: mg/dL

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text: mm Hg

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text: mg/dL

text: mg/dL

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text: mg/dL

text: restricted access

characteristic: latitude

text: restricted access

text: yes

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text: no

text: no

text: no

text: yes

text: yes

text: no

text: no

text: no

text: no

text: human gut metagenome

text: clindamycin topical gel,

text: RCHSD biorepository

text: TRUE

text: White

text: stool

text: human gut metagenome

text: female

text: no

text: yes

text: months

text: U/kg/d

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: no

text: no

text: stool swab

characteristic: description

text: FALSE

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text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

text: human-gut

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text: feces

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text: restricted access

characteristic: geo loc name

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text: feces

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text: years

text: cm

text: kg

text: U/L

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text: mg/dL

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text: mg/dL

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text: restricted access

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characteristic: longitude

text: no

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text: no

text: no

text: no

text: no

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text: no

text: no

text: human gut metagenome

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text: stool

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text: UCSDMI

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text: Animal

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text: urban biome

text: human associated habitat

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text: mg/dL

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

text: human gut metagenome

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text: yes

text: months

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text: no


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characteristic: External Id

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text: no

text: stool swab

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text: mg/dL

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

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text: yes

text: months

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

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text: mg/dL

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characteristic: longitude

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text: no

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text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

text: human gut metagenome

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text: yes

text: months

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text: no


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text: no

text: stool swab

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text: human associated habitat

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text: mg/dL

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text: mg/dL

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text: mm Hg

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text: mg/dL

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text: mg/dL

text: mm Hg

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text: mg/dL

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text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

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text: yes

text: months

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text: no


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characteristic: INSDC last update

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text: no

text: no

text: stool swab

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text: Host-asssociated

text: Animal

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text: urban biome

text: human associated habitat

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characteristic: ethnicity

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text: mg/dL

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text: mm Hg

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text: mg/dL

text: mm Hg

text: mg/dL

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text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: TRUE

text: Other

text: stool

text: human gut metagenome

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text: no

text: yes

text: months

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text: no


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characteristic: ENA-FIRST-PUBLIC

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text: no

text: no

text: stool swab

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text: mm Hg

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text: mg/dL

text: mm Hg

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text: mg/dL

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text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: not provided

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text: stool

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text: yes

text: months

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characteristic: INSDC last update

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characteristic: anonymized name

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text: no

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text: mm Hg

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text: mg/dL

text: not provided

text: mg/dL

text: mm Hg

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text: mg/dL

text: restricted access

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text: no

text: no

text: no

text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: White

text: stool

text: human gut metagenome

text: female

text: no

text: yes

text: months

text: U/kg/d

text: no


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text: no

text: stool swab

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text: Host-asssociated

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text: human associated habitat

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text: mg/dL

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: human gut metagenome

text: fluocinolone topical oil, tacrolimus topical ointment

text: RCHSD biorepository

text: TRUE

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text: stool

text: human gut metagenome

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text: yes

text: months

text: U/kg/d

text: no


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text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: RCHSD biorepository

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text: stool

text: human gut metagenome

text: female

text: no

text: yes

text: months

text: U/kg/d

text: no


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text: no

text: no

text: stool swab

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text: Host-asssociated

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text: human associated habitat

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text: kg

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text: mg/dL

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text: mg/dL

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

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text: no

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text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human associated habitat

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text: no

text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: Other

text: stool

text: human gut metagenome

text: female

text: no

text: yes

text: months

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text: no


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text: no

text: no

text: stool swab

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text: FALSE

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text: Host-asssociated

text: Animal

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text: urban biome

characteristic: env biome

text: human associated habitat

characteristic: env feature

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text: feces

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text: mg/dL

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text: no

text: no

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: omeprazole, miralax

text: RCHSD biorepository

text: TRUE

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text: stool

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text: male

text: no

text: yes

text: months

text: U/kg/d

text: no


text: UCSDMI

characteristic: INSDC last update

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text: Animal

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text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: RCHSD biorepository

text: TRUE

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text: stool

text: human gut metagenome

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text: no

text: yes

text: months

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text: yes


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text: stool

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text: months

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text: urban biome

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text: no

text: no

text: no

text: no

text: no

text: no

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text: stool

text: human gut metagenome

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text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

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text: stool

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text: months

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text: no

text: no

text: no

text: no

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text: stool

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text: no

text: no

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text: mm Hg

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text: no

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: human gut metagenome

text: RCHSD biorepository

text: TRUE

text: Other

text: stool

text: human gut metagenome

text: male

text: no

text: yes

text: months

text: U/kg/d

text: no


E-MTAB-11794:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11794:Sample 1

tag: Namespace:UNIVERSITY OF MANCHESTER

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: K. daigremontiana and K. pinnata have different modes of plantlet formation; K. daigremontiana produces plantlets continuously under long-day conditions whereas K. pinnata leaves form plantlets upon detachment or ageing. Therefore, tissues of four different K. daigremontiana plantlets stages (S1, S2, S3, S4) were selected and harvested for the RNA-sequencing experiment. The control samples (Con) in K. daigremontiana were young with 1 to 2 cm leaf margins. For K. pinnata, tissues at the notches (N) of post-detachment leaves across the four time points (0 h, 4 h, 24 h, 48 h) were used. At 48 hours after leaves were detached from the plants, the midvein region of leaves was harvested. This mid-section (M) of leaves after 48 h post-detachment and undetached notches (0h) were used as control samples. Wild-type K. daigremontiana plants were grown in SANYO versatile environmental test chamber MLR-351 at 23˚C with a photoperiod of 16 hour/8 hours with 50 μmol m-2s-1 light and 60 % humidity. Wild-type K. pinnata plants were grown in Percival Scientific growth chamber AR-60L at 23˚C with a photoperiod of 8 hours/16 hours with 30 μmol m-2s-1 light and 60% humidity. The plants were grown in a mixture of 6 parts Levington® F2 Seed & Modular Compost (The Scotts Company, UK), 1 part Vermiculite V3 medium (Sinclair Pro, UK) and 1 part Perlite P35 standard (Sinclair Pro, UK). Four distinct stages of plantlet formation in wild-type K. daigremontiana were identified to include stages of plantlet initiation. Leaves exhibiting at least three of these stages of plantlet maturation along its leaf margin were carefully selected for use. The leaves were removed using a razor blade and 0.3 cm2 tissues at the leaf notches were harvested using the blade. The control samples were the whole margin of leaves of about 1-2cm long when measured from base to tip of each leaf. As for K. pinnata, four time points after leaf detachment (0 h, 4 h, 24 h, 48 h) were selected. 0.3 cm2 tissues at the leaf notches were harvested with a razor blade from unattached leaves (0 h) and leaves detached after 4 hours, 24 hours and 48 hours. No major morphological changes were present during these time points. All samples harvested were immediately frozen in liquid nitrogen and stored at -80°C until RNA extraction. Wild-type K. daigremontiana plants were grown in SANYO versatile environmental test chamber MLR-351 at 23˚C with a photoperiod of 16 hour/8 hours with 50 μmol m-2s-1 light and 60 % humidity. Wild-type K. pinnata plants were grown in Percival Scientific growth chamber AR-60L at 23˚C with a photoperiod of 8 hours/16 hours with 30 μmol m-2s-1 light and 60% humidity. The plants were grown in a mixture of 6 parts Levington® F2 Seed & Modular Compost (The Scotts Company, UK), 1 part Vermiculite V3 medium (Sinclair Pro, UK) and 1 part Perlite P35 standard (Sinclair Pro, UK). Total RNAs from each sample were extracted with Qiagen RNeasy Plant Mini Kit (Qiagen, UK) according to the manufacturer’s protocol with modification. For K. daigremontiana samples, 600 μl of RLC buffer with 10 mg of Polyvinylpyrrolidone (PVP) with a molecular weight of 40,000 was used for a maximum of 100 mg tissue powder. For K. pinnata samples, 600 μl of RLC buffer with 10 mg of Polyethylene glycol (PEG) with a molecular weight of 40,000 was used for a maximum of 100 mg of tissue powder. The mixed solution of samples from K. daigremontiana or K. pinnata was then vortexed and incubated for 1 minute at 56°C and 80°C respectively before following the subsequent steps of the kit’s protocol. Quality and integrity of the RNA samples were assessed using a 2200 TapeStation (Agilent Technologies) and then libraries generated using the TruSeq® Stranded mRNA assay (Illumina, Inc.) according to the manufacturer’s protocol. Briefly, total RNA (0.1-4ug) was used as input material from which polyadenylated mRNA was purified using poly-T, oligo-attached, magnetic beads. The mRNA was then fragmented using divalent cations under elevated temperature and then reverse transcribed into first strand cDNA using random primers. Second strand cDNA was then synthesised using DNA Polymerase I and RNase H. Following a single 'A' base addition, adapters were ligated to the cDNA fragments, and the products then purified and enriched by PCR to create the final cDNA library.

characteristic: description

text: plantlet

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Kalanchoe pinnata

characteristic: organism

text: Kalanchoe pinnata

text: plantlet

characteristic: organism part

text: Kalanchoe pinnata

text: Sample 1

characteristic: title


E-MTAB-11794:Sample 2

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11794:Sample 2

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 2


E-MTAB-11794:Sample 3

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 3

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 3


E-MTAB-11794:Sample 7

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 7

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 7


E-MTAB-11794:Sample 8

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 8

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 8


E-MTAB-11794:Sample 9

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 9

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 9


E-MTAB-11794:Sample 4

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-11794:Sample 4

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 4


E-MTAB-11794:Sample 5

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

text: public

text: E-MTAB-11794:Sample 5

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 5


E-MTAB-11794:Sample 6

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 6


E-MTAB-11794:Sample 10

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 10

text: ArrayExpress

characteristic: broker name

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 10


E-MTAB-11794:Sample 11

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 11

text: ArrayExpress

characteristic: description

text: plantlet

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 11


E-MTAB-11794:Sample 12

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 12

text: ArrayExpress

text: plantlet

characteristic: developmental stage

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: plantlet

text: Kalanchoe pinnata

text: Sample 12


E-MTAB-11794:Sample 13

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 13

text: ArrayExpress

text: adult

text: wild type genotype

characteristic: genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: leaf mid-section

text: Kalanchoe pinnata

text: Sample 13


E-MTAB-11794:Sample 14

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 14

text: ArrayExpress

text: adult

text: wild type genotype

text: Kalanchoe pinnata

characteristic: organism

text: Kalanchoe pinnata

text: leaf mid-section

text: Kalanchoe pinnata

text: Sample 14


E-MTAB-11794:Sample 15

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 15

text: ArrayExpress

text: adult

text: wild type genotype

text: Kalanchoe pinnata

text: Kalanchoe pinnata

text: leaf mid-section

characteristic: organism part

text: Kalanchoe pinnata

text: Sample 15


E-MTAB-11794:Sample 20

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 20

text: ArrayExpress

text: devil's backbone

characteristic: common name

text: adult

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: leaf margin

text: Kalanchoe daigremontiana

text: Sample 20

characteristic: title


E-MTAB-11794:Sample 25

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11794:Sample 25

text: ArrayExpress

text: devil's backbone

text: adult

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: leaf margin

text: Kalanchoe daigremontiana

text: Sample 25


E-MTAB-11794:Sample 30

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11794:Sample 30

text: ArrayExpress

text: devil's backbone

text: adult

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: leaf margin

text: Kalanchoe daigremontiana

text: Sample 30


E-MTAB-11794:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 16

text: ArrayExpress

text: devil's backbone

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 16


E-MTAB-11794:Sample 21

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-11794:Sample 21

text: ArrayExpress

text: devil's backbone

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 21


E-MTAB-11794:Sample 26

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

text: public

text: E-MTAB-11794:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: devil's backbone

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 26


E-MTAB-11794:Sample 17

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 17

text: ArrayExpress

characteristic: broker name

text: devil's backbone

characteristic: description

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 17


E-MTAB-11794:Sample 22

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 22

text: ArrayExpress

text: devil's backbone

text: plantlet

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 22


E-MTAB-11794:Sample 27

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 27

text: ArrayExpress

text: devil's backbone

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

characteristic: organism

text: Kalanchoe daigremontiana

text: plantlet

characteristic: organism part

text: Kalanchoe daigremontiana

text: Sample 27


E-MTAB-11794:Sample 18

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-11794:Sample 18

text: ArrayExpress

text: devil's backbone

characteristic: common name

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 18

characteristic: title


E-MTAB-11794:Sample 23

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11794:Sample 23

text: ArrayExpress

text: devil's backbone

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 23


E-MTAB-11794:Sample 28

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-11794:Sample 28

text: ArrayExpress

text: devil's backbone

text: plantlet

text: wild type genotype

text: Kalanchoe daigremontiana

text: Kalanchoe daigremontiana

text: plantlet

text: Kalanchoe daigremontiana

text: Sample 28