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text: NVRL

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Meath

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MH-NVRL-S22IRL00442520/2022

characteristic: title


status: PUBLIC

tag: attribute

text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Monaghan

characteristic: geographic location (region and locality)

unit: year

characteristic: host age

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characteristic: virus identifier


characteristic: ENA-CHECKLIST

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text: Ireland

text: Europe / Ireland / Monaghan

text: human

text: not provided

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text: Homo sapiens

text: female

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text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MN-NVRL-S22IRL00441317/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Monaghan

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text: Homo sapiens

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text: hCoV-19/Ireland/MN-NVRL-S22IRL00442141/2022


characteristic: ENA-CHECKLIST

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text: Europe / Ireland / Mayo

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text: not provided

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text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/MO-NVRL-S22IRL00445203/2022

characteristic: virus identifier


text: NVRL

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text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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text: Europe / Ireland / Mayo

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text: hCoV-19/Ireland/MO-NVRL-S22IRL00442233/2022

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: organism

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text: hCoV-19/Ireland/MO-NVRL-S22IRL00441456/2022


text: NVRL

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characteristic: common name

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text: human

text: not provided

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text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/OY-NVRL-S22IRL00445121/2022

characteristic: title


text: NVRL

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text: hCoV-19/Ireland/OY-NVRL-S22IRL00445118/2022


characteristic: ENA-CHECKLIST

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text: hCoV-19/Ireland/OY-NVRL-S22IRL00445120/2022

characteristic: virus identifier


text: NVRL

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text: National Virus Reference Laboratory

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text: Human coronavirus 2019

characteristic: common name

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text: Ireland

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characteristic: geographic location (latitude)

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text: Europe / Ireland / Offaly

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characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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text: not provided

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text: male

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text: Oro-Nasopharyngeal swab

characteristic: organism

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text: hCoV-19/Ireland/OY-NVRL-S22IRL00438185/2022


text: NVRL

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text: human

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text: hCoV-19/Ireland/OY-NVRL-S22IRL00442247/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Offaly

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characteristic: ENA-CHECKLIST

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text: Ireland

text: Europe / Ireland / Offaly

text: human

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text: Homo sapiens

text: female

text: not provided

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text: Severe acute respiratory syndrome coronavirus 2

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text: active surveillance in response to outbreak

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characteristic: virus identifier


text: NVRL

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text: National Virus Reference Laboratory

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characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Offaly

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characteristic: title


characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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text: not provided

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text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Offaly

text: human

text: not provided

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text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/OY-NVRL-S22IRL00442249/2022


text: NVRL

text: public

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text: National Virus Reference Laboratory

text: not provided

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characteristic: common name

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text: Europe / Ireland / Offaly

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characteristic: virus identifier


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text: not provided

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text: Ireland

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text: human

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text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/OY-NVRL-S22IRL00441426/2022

characteristic: title


text: NVRL

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text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

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characteristic: common name

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characteristic: geographic location (country and/or sea)

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text: Europe / Ireland / Offaly

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text: not provided

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text: hCoV-19/Ireland/OY-NVRL-S22IRL00442534/2022


characteristic: ENA-CHECKLIST

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text: not provided

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text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Offaly

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/OY-NVRL-S22IRL00442254/2022

characteristic: virus identifier


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Roscommon

characteristic: geographic location (region and locality)

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text: female

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text: hCoV-19/Ireland/RN-NVRL-S22IRL00442229/2022

characteristic: title


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text: National Virus Reference Laboratory

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text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Roscommon

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/RN-NVRL-S22IRL00442399/2022


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Roscommon

characteristic: geographic location (region and locality)

characteristic: host age

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text: male

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text: hCoV-19/Ireland/RN-NVRL-S22IRL00441656/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

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text: National Virus Reference Laboratory

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text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Roscommon

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/RN-NVRL-S22IRL00440689/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

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text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Sligo

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: not provided

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text: male

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text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

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text: hCoV-19/Ireland/SO-NVRL-S22IRL00445150/2022


characteristic: ENA-CHECKLIST

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text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

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text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Sligo

text: human

text: not provided

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/SO-NVRL-S22IRL00442239/2022

characteristic: virus identifier


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

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characteristic: common name

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Sligo

characteristic: geographic location (region and locality)

characteristic: host age

text: human

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text: Homo sapiens

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text: male

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text: not provided

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text: hCoV-19/Ireland/SO-NVRL-S22IRL00442236/2022

characteristic: title


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characteristic: organism

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text: hCoV-19/Ireland/SO-NVRL-S22IRL00442181/2022


text: NVRL

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characteristic: common name

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characteristic: title


text: NVRL

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characteristic: title


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text: NVRL

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text: hCoV-19/Ireland/TA-NVRL-S22IRL00442146/2022


text: NVRL

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

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text: Ireland

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text: Europe / Ireland / Tipperary

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text: NVRL

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characteristic: organism

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text: hCoV-19/Ireland/WD-NVRL-S22IRL00445309/2022


text: NVRL

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characteristic: title


text: NVRL

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characteristic: virus identifier


text: NVRL

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characteristic: organism

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text: hCoV-19/Ireland/WD-NVRL-S22IRL00441246/2022


text: NVRL

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text: NVRL

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text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

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text: Europe / Ireland / Wicklow

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text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Wicklow

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/WW-NVRL-S22IRL00441725/2022


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wicklow

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/WW-NVRL-S22IRL00442383/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Wicklow

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WW-NVRL-S22IRL00442380/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00442435/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Wexford

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00442438/2022

characteristic: virus identifier


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/WX-NVRL-S22IRL00442434/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Wexford

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00441604/2022


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/WX-NVRL-S22IRL00441708/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: Ireland

text: Europe / Ireland / Wexford

text: human

text: not provided

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00442519/2022

characteristic: title


text: NVRL

text: public

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00442174/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KCL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Guy’s and St. Thomas’ NHS Foundation Trust

characteristic: collecting institution

characteristic: collection date

text: Luke Blagdon Snell

characteristic: collector name

text: nose and throat swab

text: United Kingdom

text: human

text: diseased

text: Homo sapiens

text: female

text: Case 1

text: nose and throat swab

characteristic: isolate

characteristic: organism


text: University of Warmia and Mazury

text: public

tag: Namespace:University of Warmia and Mazury

text: domestic pig

characteristic: common name

text: cDNA from the pituitary gland of the domestic pig on day 10-12 of the estrous cycle

characteristic: description

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: female

characteristic: sex

text: adenohypophysis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Warmia and Mazury

text: public

text: domestic pig

text: cDNA from the pituitary gland of the domestic pig on day 15-16 of the early gestation

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: female

text: adenohypophysis


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: United Kingdom

text: England

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: United Kingdom

text: Scotland

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

text: Science Park of Comenius University of Bratislava

text: not provided

characteristic: common name

text: Slovakia

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


text: Regional Public Health Authority with the seat in Banská Bystrica, Slovakia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: broker name

text: not provided

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

unit: month

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Slovakia

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: RNA

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Shanghai Tenth People's Hospital

text: public

characteristic: SRA accession

tag: Namespace:Shanghai Tenth People's Hospital

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Shanghai Tenth People's Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: YPD medium

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99


text: University Hospital Zurich

text: public

characteristic: INSDC status

tag: Namespace:University Hospital Zurich

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Shanghai Tenth People's Hospital

text: public

text: ArrayExpress

text: Protocols: Cells were grown in YPD broth at 37˚C from OD600=0.01 till OD600=1.0. Cells were treated with 8 µg/ml or 32 µg/ml of brefeldin A, or DMSO (control) for 1h. Pellets of 5ml cell culture were obtained by centrifuging at maximum speed for 1min. the pellets were fast frozen in liquid nitrogen. RNA was extracted using the TRIzol method following the manufacturer's protocol. Cell pellets were transferred from liquid nitrogen into the 2ml tub containing 1.5ml Trizol reagent. The mix was shared for 3min, and kept for 5in at room temperature, then centrifuged at 10,000xg for 5min at 4˚C. The supernatant was added 200µl of chloroform/isoamyl alcohol (24:1) with 1ml lysis reagents. After centrifuged at 10,000g for 10min at 4˚C, the supernatant was transferred into another new tube with equal volume of isopropanol and put in the refrigerator at -20˚C for 1h. After centrifuged at 13600xg for 20min at 4˚C, the supernatant was precipitated by 1ml of 75% ethanol and let dry for 3-5min. The RNA pellet was dissolved with 30-100µl of DEPC water. The concentration of the extracted RNA was determined using a Nanodrop system (NanoDrop, Madison, USA), and the integrity of the RNA was examined by the RNA integrity number (RIN) using an Agilent 2100 bioanalyzer (Agilent, Santa Clara, USA) buffer at appropriate temperature. Then First-strand cDNA was generated using random hexamer-primed reverse transcription, followed by a second-strand cDNA synthesis. afterwards, A-Tailing Mix and RNA Index Adapters were added by incubating to end repair. The cDNA fragments obtained from previous step were amplified by PCR, and products were purified by Ampure XP Beads, then dissolved in EB solution. The product was validated on the Agilent Technologies 2100 bioanalyzer for quality control. The double stranded PCR products from previous step were heated denatured and circularized by the splint oligo sequence to get the final library. The single strand circle DNA (ssCir DNA) was formatted as the final library.

text: wild type genotype

text: YPD medium

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99


text: public

characteristic: SRA accession

tag: Namespace:Bioaraba Research Healtj Insititute, Araba University Hospital,

characteristic: Submitter Id

text: human

text: Blood sample from healthy parents

text: yes

characteristic: germline

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex


text: Bioaraba Research Healtj Insititute, Araba University Hospital,

text: public

text: human

text: Blood sample from healthy parents

characteristic: description

text: yes

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female


text: public

text: human

text: Blood sample from healthy parents

text: yes

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

text: DPSQ

text: public

text: Haloferax volcanii H26 (strain DS2) logarithmic growth phase (A650=0.2) RNA sample

text: Haloferax volcanii DS2

text: Haloferax volcanii DS2

characteristic: strain

text: Hvol log phase sample


characteristic: External Id

text: DPSQ

characteristic: INSDC center name

text: public

text: Haloferax volcanii H26 (strain DS2) stationary growth phase (A650=1.0) RNA sample

text: Haloferax volcanii DS2

text: Haloferax volcanii DS2

text: Hvol stat phase sample


text: DPSQ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Haloferax mediterranei WR505 (strain ATCC 33500) logarithmic growth phase (A650=0.2) RNA sample

text: Haloferax mediterranei ATCC 33500

text: Haloferax mediterranei ATCC 33500

text: ATCC 33500

text: Hmed log phase sample


text: DPSQ

text: public

characteristic: INSDC status

text: Haloferax mediterranei WR505 (strain ATCC 33500) stationary growth phase (A650=1.0) RNA sample

text: Haloferax mediterranei ATCC 33500

text: Haloferax mediterranei ATCC 33500

text: ATCC 33500

text: Hmed stat phase sample


text: UMR 6249 Chrono-Environnement

text: public

tag: Namespace:UMR 6249 Chrono-Environnement

text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

text: Site F, Plot 10, Tree 35

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

text: ITS1-F (5ʹ-CTTGGTCATTTAGAGGAAGTAA-3ʹ), ITS1-R (5ʹ-GCTGCGTTCTTCATCGATGC-3ʹ)

characteristic: pcr primers

text: Biofiltree

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Anthropogenic terrestrial biome

text: Site F, Plot 10, Tree 43

characteristic: description

text: silty-loam

text: France

text: Inorganically enriched sediment

text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


text: UMR 6249 Chrono-Environnement

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

text: Site F, Plot 10, Tree 64

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

text: Anthropogenic terrestrial biome

text: Site F, Plot 11, Tree 23

text: silty-loam

text: France

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

text: Site F, Plot 11, Tree 27

characteristic: description

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text: Inorganically enriched sediment

text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

text: Anthropogenic terrestrial biome

characteristic: collection date

characteristic: depth

text: Site F, Plot 11, Tree 47

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

text: Anthropogenic terrestrial biome

text: Site F, Plot 12, Tree 35

text: silty-loam

text: France

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

text: Site F, Plot 12, Tree 47

characteristic: description

text: silty-loam

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text: Inorganically enriched sediment

text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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text: Anthropogenic terrestrial biome

characteristic: collection date

characteristic: depth

text: Site F, Plot 12, Tree 53

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

text: Anthropogenic terrestrial biome

text: Site F, Plot 14, Tree 23

text: silty-loam

text: France

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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characteristic: SRA accession

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text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

text: Site F, Plot 14, Tree 37

characteristic: description

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text: Inorganically enriched sediment

text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

text: Anthropogenic terrestrial biome

characteristic: collection date

characteristic: depth

text: Site F, Plot 14, Tree 46

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

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text: Anthropogenic terrestrial biome

text: Site F, Plot 19, Tree 32

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characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

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text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

text: Site F, Plot 19, Tree 36

characteristic: description

text: silty-loam

text: France

text: Inorganically enriched sediment

text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Anthropogenic terrestrial biome

characteristic: collection date

characteristic: depth

text: Site F, Plot 19, Tree 54

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

text: Anthropogenic terrestrial biome

text: Site F, Plot 31, Tree 35

text: silty-loam

text: France

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Anthropogenic terrestrial biome

characteristic: broad-scale environmental context

text: Site F, Plot 31, Tree 42

characteristic: description

text: silty-loam

text: France

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text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

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characteristic: collection date

characteristic: depth

text: Site F, Plot 31, Tree 57

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

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text: Anthropogenic terrestrial biome

text: Site F, Plot 32, Tree 35

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text: France

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

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characteristic: sequencing method

characteristic: target gene


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: Site F, Plot 32, Tree 42

characteristic: description

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text: soil metagenome

characteristic: organism

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq

characteristic: title


text: UMR 6249 Chrono-Environnement

characteristic: INSDC center name

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text: public

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characteristic: collection date

characteristic: depth

text: Site F, Plot 32, Tree 56

characteristic: elevation

text: silty-loam

characteristic: environmental medium

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Inorganically enriched sediment

text: soil metagenome

text: Biofiltree

text: soil metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 6249 Chrono-Environnement

text: public

text: Anthropogenic terrestrial biome

text: Site F, Plot 5, Tree 32

text: silty-loam

text: France

characteristic: geographic location (longitude)

text: Inorganically enriched sediment

characteristic: local environmental context

text: soil metagenome

characteristic: pcr primers

text: Biofiltree

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene