text: INRAE Dijon

text: public

text: garden pea

text: CAROUBY DE MAUSSANE

text: Pisum sativum

text: Pisum sativum


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE Dijon

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRAE Dijon

characteristic: Submitter Id

text: garden pea

characteristic: common name

text: Genomic sequencing reads obtained after exome capture

characteristic: description

text: CORNE DE BELIER

characteristic: genotype

text: Pisum sativum

characteristic: organism

text: Pisum sativum

characteristic: title


text: INRAE Dijon

text: public

text: garden pea

text: NEPAL A

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: HAITI COLORE

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: BINGEFORS

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: CLAUSE H4

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: POIS IRANIEN 57 B

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: MISTRAL

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: MONITOR

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: garden pea

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: PISUM TRANSCAUCASICUM JI45

text: Pisum sativum subsp. transcaucasicum

text: Pisum sativum subsp. transcaucasicum


text: INRAE Dijon

text: public

text: garden pea

text: FENN af

text: Pisum sativum

text: Pisum sativum


text: INRAE Dijon

text: public

text: PISUM HUMILE JI1794

text: Pisum sativum var. pumilio

text: Pisum sativum var. pumilio


text: INRAE Dijon

text: public

text: PISUM HUMILE JI241

text: Pisum sativum var. pumilio

text: Pisum sativum var. pumilio


text: INRAE Dijon

text: public

text: ABYSSINICUM VAVILOVANIUM

text: Pisum abyssinicum

text: Pisum abyssinicum


text: INRAE Dijon

text: public

text: AFGHANISTAN ASIATICUM

text: Pisum sativum subsp. asiaticum

text: Pisum sativum subsp. asiaticum


text: INRAE Dijon

text: public

text: PISUM ELATIUS JI1075

text: Pisum sativum subsp. elatius

text: Pisum sativum subsp. elatius


text: INRAE Dijon

text: public

text: PISUM ELATIUS JI1089

text: Pisum sativum subsp. elatius

text: Pisum sativum subsp. elatius


text: INRAE Dijon

text: public

text: PISUM ELATIUS JI261

text: Pisum sativum subsp. elatius

text: Pisum sativum subsp. elatius


text: INRAE Dijon

text: public

text: CAPSICUM

text: Pisum sativum subsp. elatius

text: Pisum sativum subsp. elatius


text: INRAE Dijon

text: public

text: garden pea

text: PISUM SATIVUM-HIBERNICUM JI1846

text: Pisum sativum

text: Pisum sativum


text: Enterobacter cloacae

characteristic: ArrayExpress-Species

text: SC

text: public

text: Enterobacter cloacae

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Enterobacter hormaechei

text: SC

text: public

text: Enterobacter hormaechei

text: Enterobacter hormaechei

text: Enterobacter hormaechei


text: Enterobacter kobei

text: SC

text: public

text: Enterobacter kobei

text: Enterobacter kobei

text: Enterobacter kobei


text: Ralstonia mannitolilytica

text: SC

text: public

text: Ralstonia mannitolilytica

text: Ralstonia mannitolilytica

text: Ralstonia mannitolilytica


text: unidentified

text: SC

text: public

text: unidentified

text: unidentified

text: unidentified


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not provided

characteristic: common name

text: Portugal

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: organism


text: IAU CM

text: public

tag: Namespace:IAU CM

text: biome

characteristic: broad-scale environmental context

characteristic: collection date

text: human

text: Stool

characteristic: description

text: stool

characteristic: environmental medium

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: digestive tract

characteristic: local environmental context

text: Homo sapiens

text: Microbiota & IBD

characteristic: project name

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Dr. Risch

text: SIB

characteristic: broker name

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collecting institution

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

characteristic: collector name

text: Liechtenstein

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-1104R14462/2022

characteristic: isolate

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Promed Laboratoire Médical SA, Route de l'Ancienne Papeterie 131, 1723 Marly 1

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: FR

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/FR-Risch-1103R14491/2022

characteristic: organism

text: other

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: GR

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GR-Risch-1031R14483/2022


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-Risch-1029R14488/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1102R14472/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: AG

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1026R14449/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

text: SIB

text: Switzerland

text: SH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SH-Risch-1027R14410/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-Risch-1026R14435/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: SG

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1019R14441/2022


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: SG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SG-Risch-1105R14480/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1030R14474/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collecting institution

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

characteristic: collector name

text: Switzerland

text: TG

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TG-Risch-1024R14427/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1105R14469/2022

characteristic: isolate

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1029R14404/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1104R14465/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-1104R14453/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1101R14475/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: SG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1104R14470/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-Risch-1017R14432/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1103R14456/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-Risch-1013R14442/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: GR

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GR-Risch-1103R14415/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1103R14461/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: GR

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GR-Risch-1024R14419/2022

text: active surveillance in response to outbreak


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1031R14473/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1102R14446/2022

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-Risch-1024R14424/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1101R14478/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-Risch-1024R14431/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: GL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GL-Risch-1024R14409/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-1103R14460/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GL-Risch-1025R14426/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1026R14434/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1104R14464/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GR

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GR-Risch-1104R14479/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1024R14440/2022

text: active surveillance in response to outbreak


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-1031R14452/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1031R14459/2022

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1024R14405/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: FR

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/FR-Risch-1027R14408/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1103R14455/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: JU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/JU-Risch-1027R14495/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: SZ

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SZ-Risch-1028R14485/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1103R14467/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-Risch-1024R14429/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1102R14482/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AR

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AR-Risch-1028R14436/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1105R14445/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Switzerland

text: LU

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-Risch-1027R14451/2022

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1104R14454/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1104R14477/2022

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1103R14466/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SZ

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SZ-Risch-1024R14484/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1025R14430/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: SH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SH-Risch-1025R14407/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: JU

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/JU-Risch-1025R14490/2022

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-Risch-1104R14481/2022


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: SO

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/SO-Risch-1024R14421/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1024R14444/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1025R14492/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

text: Liechtenstein

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Liechtenstein/FL-Risch-1104R14457/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

text: Liechtenstein

characteristic: geographic location (country and/or sea)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Liechtenstein/FL-Risch-1031R14458/2022

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-Risch-1104R14468/2022

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1103R14476/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-Risch-1101R14447/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-Risch-1103R14463/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC last update

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics.

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

text: This biosample is a metagenome-assembled genome obtained from the metagenomes sample: ERS9898820

characteristic: description

text: marine ultramafic hydrothermal vent

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Mycoplasmataceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Mycoplasmataceae bacterium

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: marine ultramafic hydrothermal vent

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

text: uncultured Epsilonproteobacteria bacterium

characteristic: organism

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

text: This biosample is a metagenome-assembled genome obtained from the metagenomes sample: ERS9898821

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Mollicutes bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Mollicutes bacterium

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: marine basaltic hydrothermal vent biome

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

text: uncultured Mycoplasmataceae bacterium

characteristic: organism

text: uncultured Mycoplasmataceae bacterium

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Parcubacteria group bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: marine basaltic hydrothermal vent biome

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

text: uncultured Sulfurovum sp.

characteristic: organism

text: uncultured Sulfurovum sp.

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: This biosample is a metagenome-assembled genome obtained from the metagenomes sample: ERS9898822

text: marine basaltic hydrothermal vent biome

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

text: uncultured Mycoplasmataceae bacterium

characteristic: organism

text: uncultured Mycoplasmataceae bacterium

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Foregut Rimicaris exoculata metagenome

text: Foregut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Cardiobacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Cardiobacteriales bacterium

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs.

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: This biosample is a metagenome-assembled genome obtained from the metagenomes sample: ERS9898823

text: marine ultramafic hydrothermal vent

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

text: uncultured Deferribacteraceae bacterium

characteristic: organism

text: uncultured Deferribacteraceae bacterium

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: marine ultramafic hydrothermal vent

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Sulfurovum sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sulfurovum sp.

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: marine ultramafic hydrothermal vent

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

text: uncultured Entomoplasmatales bacterium

characteristic: organism

text: uncultured Entomoplasmatales bacterium

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

text: This biosample is a metagenome-assembled genome obtained from the metagenomes sample: ERS9898824

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: marine basaltic hydrothermal vent biome

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

text: uncultured Deferribacteraceae bacterium

characteristic: organism

text: uncultured Deferribacteraceae bacterium

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

text: This biosample is a metagenome-assembled genome obtained from the metagenomes sample: ERS9898825

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: megahit v1.2.9

characteristic: assembly software

text: coverage and kmer

characteristic: binning parameters

text: concoct and manual

text: anvi'o v6

text: marine basaltic hydrothermal vent biome

text: marine hydrothermal vent chimney

text: digestive tract

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

text: uncultured Deferribacteres bacterium

characteristic: organism

text: uncultured Deferribacteres bacterium

text: Illumina HiSeq 3000

text: multi-marker approach

characteristic: title


text: IFREMER

text: public

text: megahit v1.2.9

text: coverage and kmer

text: concoct and manual

characteristic: binning software

characteristic: completeness score

text: anvi'o v6

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: marine basaltic hydrothermal vent biome

characteristic: environment (biome)

text: marine hydrothermal vent chimney

characteristic: environment (feature)

text: digestive tract

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: Midgut Rimicaris exoculata metagenome

text: Midgut Rimicaris exoculata metagenome

characteristic: metagenomic source

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 3000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Microbiology, Department of Cell and Molecular Biology (ICM), Uppsala University

characteristic: Submitter Id

text: Negative control

text: blank sample

characteristic: organism

text: blank sample

text: Negative control

characteristic: title


text: University of Milan

text: public

tag: Namespace:University of Milan

text: cattle

characteristic: common name

text: Ruminal fluid from Holstein Fresian cattle number 1 untreated and used as Control

characteristic: description

characteristic: isolate

text: Bos taurus

text: Bos taurus

text: Control


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 2 untreated and used as Control

text: Bos taurus

text: Bos taurus

text: Control


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 3 untreated and used as Control

text: Bos taurus

text: Bos taurus

text: Control


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 4 untreated and used as Control

text: Bos taurus

text: Bos taurus

text: Control


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 1 added with NEO

text: Bos taurus

text: Bos taurus

text: NEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 2 added with NEO

text: Bos taurus

text: Bos taurus

text: NEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 3 added with NEO

text: Bos taurus

text: Bos taurus

text: NEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 4 added with NEO

text: Bos taurus

text: Bos taurus

text: NEO


text: University of Milan

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: SEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 1 added with SEO

text: Bos taurus

text: Bos taurus

text: SEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 2 added with SEO

text: Bos taurus

text: Bos taurus

text: SEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 3 added with SEO

text: Bos taurus

text: Bos taurus

text: SEO


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 4 added with SEO

text: Bos taurus

text: Bos taurus

text: SEO


text: University of Milan

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: Carvacrol


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 1 added with Carvacrol

text: Bos taurus

text: Bos taurus

text: Carvacrol


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 2 added with Carvacrol

text: Bos taurus

text: Bos taurus

text: Carvacrol


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 3 added with Carvacrol

text: Bos taurus

text: Bos taurus

text: Carvacrol


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 4 added with Carvacrol

text: Bos taurus

text: Bos taurus

text: Carvacrol


text: University of Milan

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: p-cymene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 1 added with p-cymene

text: Bos taurus

text: Bos taurus

text: p-cymene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 2 added with p-cymene

text: Bos taurus

text: Bos taurus

text: p-cymene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 3 added with p-cymene

text: Bos taurus

text: Bos taurus

text: p-cymene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 4 added with p-cymene

text: Bos taurus

text: Bos taurus

text: p-cymene


text: University of Milan

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: gamma-terpinene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 1 added with gamma-terpinene

text: Bos taurus

text: Bos taurus

text: gamma-terpinene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 2 added with gamma-terpinene

text: Bos taurus

text: Bos taurus

text: gamma-terpinene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 3 added with gamma-terpinene

text: Bos taurus

text: Bos taurus

text: gamma-terpinene


text: University of Milan

text: public

text: cattle

text: Ruminal fluid from Holstein Fresian cattle number 4 added with gamma-terpinene

text: Bos taurus

text: Bos taurus

text: gamma-terpinene


text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: University of Oxford

characteristic: collecting institution

characteristic: collection date

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: not collected

characteristic: host sex

text: not collected

characteristic: host subject id

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Influenza A virus

text: Influenza A virus

text: Influenza genome sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BIRMINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BIRMINGHAM

characteristic: Submitter Id

text: Clinical E. faecium isolate

text: United Kingdom

text: Birmingham

characteristic: geographic location (region and locality)

text: diseased

text: Homo Sapien

text: Blood culture

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF BIRMINGHAM

text: public

characteristic: collection date

text: Clinical E. faecium isolate

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Birmingham

text: diseased

characteristic: host health state

text: Homo Sapien

characteristic: isolate

text: Rectal swab

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BIRMINGHAM

text: public

text: Evolved E. faecium isolate

text: United Kingdom

text: Birmingham

text: Homo Sapien

characteristic: host scientific name

text: Laboratory

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology

text: freshwater ecosystem

characteristic: broad-scale environmental context

unit: m

characteristic: depth

text: Inlet stream of Jiricka pond metagenome

text: water

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: freshwater river biome

characteristic: local environmental context

text: riverine metagenome

characteristic: project name

text: riverine metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Inlet stream metagenome


text: Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater ecosystem

characteristic: collection date

text: Freshwater Jiricka pond metagenome

characteristic: description

text: water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: freshwater lake biome

text: lake water metagenome

text: lake water metagenome

text: Illumina NovaSeq 6000

text: Freshwater pond metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: freshwater ecosystem

text: Inlet dark treatment: mesocosm replicate A

text: water

text: Czech Republic

text: mesocosm

text: metagenome

characteristic: organism

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment

characteristic: title


text: public

text: freshwater ecosystem

characteristic: broad-scale environmental context

characteristic: depth

text: Inlet light treatment: mesocosm replicate B

text: water

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mesocosm

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater ecosystem

characteristic: collection date

text: Inlet dark treatment: mesocosm replicate C

text: water

text: Czech Republic

text: mesocosm

text: metagenome

text: metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Freshwater mesocosm experiment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: freshwater ecosystem

text: Inlet light treatment: mesocosm replicate D

characteristic: description

text: water

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: mesocosm

text: metagenome

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment


text: public

text: freshwater ecosystem

characteristic: broad-scale environmental context

characteristic: depth

text: Inlet dark treatment: mesocosm replicate E

text: water

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mesocosm

text: metagenome

characteristic: organism

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater ecosystem

text: Inlet light treatment: mesocosm replicate F

text: water

text: Czech Republic

text: mesocosm

characteristic: local environmental context

text: metagenome

characteristic: project name

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: freshwater ecosystem

characteristic: collection date

text: Pond control treatment: mesocosm replicate G

text: water

text: Czech Republic

text: mesocosm

text: metagenome

text: metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Freshwater mesocosm experiment


text: public

text: freshwater ecosystem

characteristic: broad-scale environmental context

characteristic: depth

text: Pond control treatment: mesocosm replicate H

characteristic: description

text: water

characteristic: environmental medium

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mesocosm

text: metagenome

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater ecosystem

text: Pond control treatment: mesocosm replicate I

text: water

text: Czech Republic

text: mesocosm

text: metagenome

characteristic: organism

text: metagenome

text: Illumina NovaSeq 6000

text: Freshwater mesocosm experiment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Cave in Switzerland

text: Water sample taken from shallow cave pool

text: water

text: Switzerland

text: cave pool

characteristic: local environmental context

text: cave metagenome

characteristic: project name

text: cave metagenome

text: Illumina NovaSeq 6000

text: Cave pool metagenome


text: IMPERIAL COLLEGE LONDON

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: description

text: Staphylococcus aureus subsp. aureus RN4220


OxaR

text: IMPERIAL COLLEGE LONDON

text: public

text: OxaR

text: OxaR

text: OxaR


Wolbachia pipientis wMelPlus (wMelCS3)

text: public

text: Wolbachia pipientis wMelPlus (wMelCS3)

tag: Namespace:Institute of Cytology and Genetics of SB RAS

text: The Wolbachia endosymbiont of Drosophila melanogaster strain wMelPlus which provides an increase in resistance to thermal stress of its host

text: Uzbekistan, 1989

characteristic: geographic location (region and locality)

text: wMelPlus

characteristic: strain

text: Wolbachia pipientis wMelPlus (wMelCS3)


Wolbachia pipientis wMelCS112

text: Institute of Cytology and Genetics of SB RAS

characteristic: INSDC first public

text: public

text: Wolbachia pipientis wMelCS112

text: The Wolbachia endosymbiont of the Drosophila melanogaster strain wMelCS112 shows no specific effect on its host

text: Bloomington, USA, 2010

text: Wolbachia endosymbiont of Drosophila melanogaster

text: Wolbachia pipientis wMelCS112


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specific multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Holland

characteristic: geographic location (region and locality)

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Zeeland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: not collected

characteristic: isolation source host-associated

characteristic: sample capture status


text: Quadram Institute Bioscience

characteristic: INSDC last update

text: public

tag: Namespace:Quadram Institute Bioscience

text: Quadram Institute Bioscience

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Genome sequence of brewer's yeast Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: South China Normal University

text: public

tag: Namespace:South China Normal University

text: NCLDV polb of soil

text: metagenome

text: metagenome

text: A continental-scale analysis of soil giant viruses reveals their habitat preference, abundance�Cdistribution relationship and potential hosts


18S rRNA

characteristic: External Id

text: South China Normal University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 18S rRNA

text: farmland,forest,Gobi desert,grassland, mine wasteland

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 33.95 N

characteristic: geographic location (latitude)

text: 105.79 E

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina 2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Continental-scale soil samples across China


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ROBERT KOCH INSTITUT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: Submitter Id

characteristic: collection date

text: isolate obtained from a human listeriosis case in Germany

characteristic: description

text: Germany

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IVb

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: Rosalind Franklin Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: collection date

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Qingdao Institute Of Bioenergy & Bioprocess Technology Chinese Academy Of Sciences

text: ArrayExpress

characteristic: broker name

text: Protocols: Cell pellets from 50 ml culture were collected by centrifugation at -4 °C and 9,000 rpm (Hitachi CF16RXII, Qingdao, China) for 5 min. Afterwards, pellets were frozen in liquid nitrogen and stored at -80°C. Total RNA was extracted using the mirVana miRNA Isolation Kit (Ambion) following the manufacturer’s protocol. RNA integrity was evaluated using the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). The samples with RNA Integrity Number (RIN) ≥ 7 were subjected to the subsequent analysis. Double stranded cDNA was generated using the SuperScript Double-Stranded cDNA synthesis kit (Invitrogen) according to the manufacturer’s instructions.It was performed by Oebiotech (Shanghai, China). The libraries were constructed using TruSeq Stranded mRNA LTSample Prep Kit (Illumina, San Diego, CA, USA) according to the manufacturer’s instructions. This part of experiment is carried out at Oebiotech (Shanghai, China).

text: exponential phase

characteristic: growth condition

text: Clostridium cellulovorans

text: Clostridium cellulovorans

text: Clostridium cellulovorans

characteristic: title


tag: attribute

characteristic: ENA-CHECKLIST

text: Qingdao Institute Of Bioenergy & Bioprocess Technology Chinese Academy Of Sciences

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: exponential phase

text: Clostridium cellulovorans

text: Clostridium cellulovorans

text: Clostridium cellulovorans


characteristic: ENA-FIRST-PUBLIC

text: Haukeland University Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Haukeland University Hospital

text: Oddvar Oppegaard

text: Blood culture

text: Norway

characteristic: geographic location (country and/or sea)

text: Bergen

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: Blood

text: Streptococcus dysgalactiae subsp. equisimilis


text: Haukeland University Hospital

text: public

text: Oddvar Oppegaard

characteristic: collection date

text: Blood culture

characteristic: description

text: Norway

text: Bergen

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood

text: Streptococcus dysgalactiae subsp. dysgalactiae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-13-11-2022-03:25:20:489-292834

tag: Namespace:CHINESE ACADEMY OF SCIENCES

text: agricultural ecosystem

characteristic: broad-scale environmental context

characteristic: depth

characteristic: elevation

text: soil

characteristic: environmental medium

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: green house

characteristic: local environmental context

text: metagenome

characteristic: organism

text: Anhui Agricultural University

characteristic: project name

text: metagenome

text: Illumina HiSeq 2000

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-13-11-2022-03:25:20:489-292835

characteristic: Submitter Id

text: agricultural ecosystem

characteristic: collection date

characteristic: description

text: soil

text: China

characteristic: geographic location (country and/or sea)

text: green house

text: metagenome

text: Anhui Agricultural University

text: metagenome

text: Illumina HiSeq 2000

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-13-11-2022-03:25:20:489-292836

text: agricultural ecosystem

characteristic: broad-scale environmental context

characteristic: depth

characteristic: elevation

text: soil

characteristic: environmental medium

text: China

text: green house

text: metagenome

text: Anhui Agricultural University

text: metagenome

text: Illumina HiSeq 2000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINESE ACADEMY OF SCIENCES

text: public

text: ena-SAMPLE-TAB-13-11-2022-03:25:20:489-292837

text: agricultural ecosystem

text: soil

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: green house

characteristic: local environmental context

text: metagenome

characteristic: organism

text: Anhui Agricultural University

characteristic: project name

text: metagenome

text: Illumina HiSeq 2000

characteristic: sequencing method


text: CHINESE ACADEMY OF SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-13-11-2022-03:25:20:489-292838

characteristic: Submitter Id

text: agricultural ecosystem

characteristic: collection date

characteristic: description

text: soil

text: China

characteristic: geographic location (country and/or sea)

text: green house

text: metagenome

text: Anhui Agricultural University

text: metagenome

text: Illumina HiSeq 2000

characteristic: title