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text: mixed sample

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text: mixed sample

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text: mixed sample

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text: Imperial College London

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text: ena-SAMPLE-TAB-15-11-2022-01:21:43:952-296441

text: Mixed roots from unknown plants taken from soil core 5E at a depth of 0 - 5 cm

text: mixed sample

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text: Imperial College London

text: public

text: ena-SAMPLE-TAB-15-11-2022-01:21:43:952-296442

text: Mixed roots from unknown plants taken from soil core 5E at a depth of 5 - 10 cm

text: mixed sample

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text: Imperial College London

text: public

text: ena-SAMPLE-TAB-15-11-2022-01:21:43:952-296443

text: Mixed roots from unknown plants taken from soil core 5E at a depth of 15 - 20 cm

text: mixed sample

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text: Imperial College London

text: public

text: ena-SAMPLE-TAB-15-11-2022-01:21:43:952-296444

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tag: Namespace:Centre for Translational Microbiome Research (CTMR)

characteristic: altitude

text: 0.right colon

text: processed based on https://doi.org/10.1101/286526

characteristic: depth

text: human gut biopsy from patient with late stage CRC

text: low

characteristic: elev

text: environment associated with an animal part or small animal [ENVO:01001055]

text: intestine environment [ENVO:2100002]

text: intestine environment [ENVO:2100002]|intestinal epithelium [UBERON:0001277]|intestinal mucosaUBERON:0001242

text: colorectal adenocarcinoma [DOID:0050861]

text: Sweden [GAZ:00002729]; Jonkoping County [GAZ:00003802]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: https://doi.org/10.1101/286526 (1 step PCR)

text: human gut metagenome

text: human gut metagenome

text: initial denaturation:95C5min,98C_0.333min;annealing:51C_20s;elongation:72C_20s;final elongation:72C_1min;25

text: FWD:CCTACGGGNGGCWGCAG;REV:GGACTACHVGGGTWTCTAAT

text: yes

text: yes

text: biopsy

text: collected during resection for primary adenocarcinoma

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

characteristic: sex

text: stage III

text: short

characteristic: survival

text: 16S rRNA

text: tumor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Translational Microbiome Research (CTMR)

text: public

text: 0.right colon

text: low

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

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text: 16S rRNA

text: normal


characteristic: INSDC center name

characteristic: INSDC first public

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text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

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text: 16S rRNA

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characteristic: SRA accession

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: no

text: biopsy

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characteristic: altitude

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text: DNA-free PCR mix

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text: human gut metagenome

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characteristic: sample-id

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characteristic: ENA-CHECKLIST

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text: DNA-free PCR mix

text: human gut metagenome

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text: yes

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: 1.left colon

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text: biopsy [OBI:0002650]

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

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text: yes

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characteristic: INSDC first public

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text: intestine environment [ENVO:2100002]

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: human gut metagenome

text: human gut metagenome

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text: biopsy

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text: 16S rRNA

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characteristic: SRA accession

characteristic: Submitter Id

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text: DNA-free PCR mix

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text: biopsy

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characteristic: altitude

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text: missing:not collected

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text: paired

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text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

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characteristic: elev

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characteristic: host

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text: biopsy [OBI:0002650]

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text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

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text: intestine environment [ENVO:2100002]

text: Homo spaiens

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text: biopsy [OBI:0002650]

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text: missing:not collected

text: 57.78 14.16

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text: DNA-free PCR mix

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text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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characteristic: sex

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text: 16S rRNA

text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

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text: intestine environment [ENVO:2100002]

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text: biopsy [OBI:0002650]

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

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characteristic: INSDC center name

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text: public

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text: biopsy [OBI:0002650]

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text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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text: stage III

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text: 16S rRNA

text: tumor


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 0.right colon

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text: biopsy [OBI:0002650]

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

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text: stage III

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text: 16S rRNA

text: normal


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characteristic: altitude

text: 1.left colon

characteristic: depth

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text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

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text: 16S rRNA

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text: public

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text: intestine environment [ENVO:2100002]

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characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

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text: missing: not collected

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characteristic: ENA-CHECKLIST

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text: human gut metagenome

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text: biopsy

characteristic: sample-id

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: 57.78 14.16

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text: DNA-free PCR mix

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characteristic: INSDC center name

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

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characteristic: survival

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characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

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text: yes

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text: missing: not collected

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text: Illumina MiSeq [OBI: 0002003]

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text: normal

text: radiation


text: public

characteristic: Submitter Id

characteristic: altitude

text: 1.left colon

characteristic: depth

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

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text: yes

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text: missing: not collected

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characteristic: description

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characteristic: host

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

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text: missing: not collected

text: human gut metagenome

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: biopsy [OBI:0002650]

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characteristic: organism

text: human gut metagenome

text: yes

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: biopsy [OBI:0002650]

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characteristic: INSDC center name

characteristic: INSDC first public

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text: biopsy [OBI:0002650]

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text: 57.78 14.16

text: paired

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text: missing: not collected

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characteristic: INSDC last update

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text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

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text: Illumina MiSeq [OBI: 0002003]

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characteristic: survival

text: 16S rRNA

text: normal


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characteristic: SRA accession

characteristic: Submitter Id

characteristic: altitude

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text: intestine environment [ENVO:2100002]

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text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

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text: 16S rRNA

text: tumor


text: public

characteristic: depth

characteristic: description

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text: intestine environment [ENVO:2100002]

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text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

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text: yes

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text: missing: not collected

text: human gut metagenome

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text: stage IV

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text: 16S rRNA

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

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text: intestine environment [ENVO:2100002]

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characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

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text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

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text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

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text: missing: not collected

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text: Illumina MiSeq [OBI: 0002003]

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text: long

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text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

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text: intestine environment [ENVO:2100002]

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text: missing:not avaliable

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text: 57.78 14.16

text: paired

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text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

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text: missing: not collected

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text: normal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

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text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

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text: missing:not collected

text: 57.78 14.16

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text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

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characteristic: sample-id

text: missing: not collected

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text: 16S rRNA

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characteristic: INSDC last update

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characteristic: INSDC status

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text: missing:not collected

text: 57.78 14.16

text: paired

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text: DNA-free PCR mix

text: human gut metagenome

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text: no

text: biopsy

text: missing: not collected

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characteristic: sex

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text: normal


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 1.left colon

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text: intestine environment [ENVO:2100002]

text: Homo spaiens

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text: biopsy [OBI:0002650]

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text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

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characteristic: survival

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 1.left colon

characteristic: depth

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

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text: human gut metagenome

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characteristic: ENA-LAST-UPDATE

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characteristic: ENA-LAST-UPDATE

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characteristic: SRA accession

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text: missing:not collected

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characteristic: ENA-LAST-UPDATE

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characteristic: INSDC last update

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characteristic: SRA accession

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: SRA accession

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characteristic: altitude

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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characteristic: ENA-LAST-UPDATE

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characteristic: ENA-LAST-UPDATE

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text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: short

characteristic: survival

text: 16S rRNA

text: tumor


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 1.left colon

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: short

text: 16S rRNA

text: normal


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 1.left colon

text: medium

characteristic: elev

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: tumor


text: public

characteristic: altitude

text: 1.left colon

characteristic: depth

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

characteristic: host

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: left colon [UBERON:0008971]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: long

text: 16S rRNA

text: normal


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 0.right colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: short

text: 16S rRNA

text: tumor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 0.right colon

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

characteristic: sample-id

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage III

text: short

text: 16S rRNA

text: normal


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

characteristic: sex

text: stage III

text: short

text: 16S rRNA

text: tumor

text: radiation


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: rectum [UBERON:0001052]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: True

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: yes

text: yes

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: female

text: stage III

text: short

characteristic: survival

text: 16S rRNA

text: normal

text: radiation


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 0.right colon

characteristic: description

text: medium

text: intestine environment [ENVO:2100002]

text: Homo spaiens

text: missing:not avaliable

text: biopsy [OBI:0002650]

text: right colon [UBERON:0008972]

text: missing:not collected

text: missing:not collected

text: 57.78 14.16

text: paired

text: False

text: DNA-free PCR mix

text: human gut metagenome

text: human gut metagenome

text: no

text: biopsy

text: missing: not collected

text: human gut metagenome

text: Illumina MiSeq [OBI: 0002003]

text: male

text: stage IV

text: long

text: 16S rRNA

text: tumor