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name: B11-A-02, RNA-seq of pre-treatment tumor tissue

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name: B11-A-03, RNA-seq of pre-treatment tumor tissue

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text: Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea

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name: B11-A-19, RNA-seq of pre-treatment tumor tissue

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text: human

text: B11-A-19, RNA-seq isolated from pre-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-21, RNA-seq of pre-treatment tumor tissue

text: public

text: human

text: B11-A-21, RNA-seq isolated from pre-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-25, RNA-seq of pre-treatment tumor tissue

text: public

text: human

text: B11-A-25, RNA-seq isolated from pre-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-26, RNA-seq of pre-treatment tumor tissue

text: public

text: human

text: B11-A-26, RNA-seq isolated from pre-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-27, RNA-seq of pre-treatment tumor tissue

text: public

text: human

text: B11-A-27, RNA-seq isolated from pre-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-30, RNA-seq of pre-treatment tumor tissue

text: public

text: human

text: B11-A-30, RNA-seq isolated from pre-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-03, RNA-seq of on-treatment tumor tissue

text: Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea

text: public

text: human

text: B11-A-03, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-05, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-05, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-06, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-06, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-10, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-10, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-11, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-11, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-12, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-12, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-18, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-18, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-19, RNA-seq of on-treatment tumor tissue

text: public

text: human

text: B11-A-19, RNA-seq isolated from on-treatment tumor tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-02, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-02, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-03, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-03, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-05, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-05, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-06, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-06, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-07, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-07, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-10, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-10, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-11, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-11, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-12, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-12, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-15, RNA-seq of pre-treatment normal tissue

text: Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea

text: public

text: human

text: B11-A-15, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-17, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-17, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-18, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-18, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-19, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-19, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-25, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-25, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-26, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-26, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-27, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-27, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-30, RNA-seq of pre-treatment normal tissue

text: public

text: human

text: B11-A-30, RNA-seq isolated from pre-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-03, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-03, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-05, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-05, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-06, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-06, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-10, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-10, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-11, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-11, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-12, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-12, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-18, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-18, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


name: B11-A-19, RNA-seq of on-treatment normal tissue

text: public

text: human

text: B11-A-19, RNA-seq isolated from on-treatment normal tissue

text: Homo sapiens

text: Homo sapiens


text: TU Delft

text: public

tag: Namespace:TU Delft

text: anthropogenic environmental material (ENVO:0010001)

characteristic: broad-scale environmental context

characteristic: collection date

text: CALCIUM

characteristic: condition

characteristic: day

text: secondary sludge (ENVO:00002058)

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: activated sludge (ENVO:00002046)

characteristic: local environmental context

text: bioreactor sludge metagenome

text: Calcium enhances PHA production and selective growth

characteristic: project name

text: A

characteristic: replicate

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: time

text: BATH

characteristic: wwtp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TU Delft

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: POTASSIUM

characteristic: description

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: organism

text: A

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: title

text: BATH


text: TU Delft

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: broad-scale environmental context

characteristic: collection date

text: CALCIUM

characteristic: condition

characteristic: day

text: secondary sludge (ENVO:00002058)

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: activated sludge (ENVO:00002046)

characteristic: local environmental context

text: bioreactor sludge metagenome

text: A

text: bioreactor sludge metagenome

text: Illumina MiSeq

text: BATH


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TU Delft

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CALCIUM

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: project name

text: A

characteristic: replicate

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: time

text: LEEUWARDEN

characteristic: wwtp


text: TU Delft

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: POTASSIUM

characteristic: condition

characteristic: day

characteristic: description

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: organism

text: A

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: title

text: LEEUWARDEN


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TU Delft

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: POTASSIUM

text: secondary sludge (ENVO:00002058)

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: activated sludge (ENVO:00002046)

characteristic: local environmental context

text: bioreactor sludge metagenome

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text: bioreactor sludge metagenome

text: Illumina MiSeq

text: LEEUWARDEN


text: TU Delft

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: CALCIUM

text: secondary sludge (ENVO:00002058)

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text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: project name

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text: BEVERWIJK

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TU Delft

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: POTASSIUM

characteristic: condition

characteristic: day

characteristic: description

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: organism

text: A

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: title

text: BEVERWIJK


text: TU Delft

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: CALCIUM

text: secondary sludge (ENVO:00002058)

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: activated sludge (ENVO:00002046)

characteristic: local environmental context

text: bioreactor sludge metagenome

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text: bioreactor sludge metagenome

text: Illumina MiSeq

text: ALMERE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TU Delft

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: POTASSIUM

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: project name

text: A

characteristic: replicate

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: time

text: ALMERE

characteristic: wwtp


text: TU Delft

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: POTASSIUM

characteristic: condition

characteristic: day

characteristic: description

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: organism

text: A

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: title

text: ALMERE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TU Delft

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CALCIUM

text: secondary sludge (ENVO:00002058)

characteristic: environmental medium

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: activated sludge (ENVO:00002046)

characteristic: local environmental context

text: bioreactor sludge metagenome

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text: bioreactor sludge metagenome

text: Illumina MiSeq

text: WINSUM


text: TU Delft

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

text: POTASSIUM

text: secondary sludge (ENVO:00002058)

text: Netherlands

text: activated sludge (ENVO:00002046)

text: bioreactor sludge metagenome

characteristic: project name

text: A

characteristic: replicate

text: bioreactor sludge metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: time

text: WINSUM

characteristic: wwtp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13839991 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Ruminococcus sp.

characteristic: organism

text: The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.

characteristic: sample derived from

text: uncultured Ruminococcus sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Ruminococcus;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13839991_bin.5_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13839992 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Alistipes putredinis

characteristic: project name

text: Alistipes putredinis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__Alistipes putredinis

text: multi-marker approach

text: Metagenome-assembled genome: SRR13839992_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13839995 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Subdoligranulum sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Subdoligranulum sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Subdoligranulum;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13839995_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13839996 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Bacteroides stercorirosoris

characteristic: project name

text: Bacteroides stercorirosoris

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercorirosoris

text: multi-marker approach

text: Metagenome-assembled genome: SRR13839996_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13839997 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides fragilis

characteristic: organism

characteristic: sample derived from

text: Bacteroides fragilis

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13839997_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840001 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Bacteroides xylanisolvens

characteristic: project name

text: Bacteroides xylanisolvens

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840001_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840002 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides uniformis

characteristic: organism

text: The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.

characteristic: sample derived from

text: Bacteroides uniformis

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides uniformis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840002_bin.3_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840013 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Blautia sp.

characteristic: project name

text: uncultured Blautia sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Blautia;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840013_bin.1_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840026 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides caecimuris

characteristic: organism

characteristic: sample derived from

text: Bacteroides caecimuris

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caecimuris

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840026_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840030 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Blautia sp.

characteristic: project name

text: uncultured Blautia sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840030_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840034 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides xylanisolvens

characteristic: organism

characteristic: sample derived from

text: Bacteroides xylanisolvens

text: Illumina HiSeq 4000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840034_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840041 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Bacteroides sp.

characteristic: project name

text: uncultured Bacteroides sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides vulgatus

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840041_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840045 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Akkermansia sp.

characteristic: organism

text: The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.

characteristic: sample derived from

text: uncultured Akkermansia sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840045_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840047 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840047_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840052 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides xylanisolvens

characteristic: organism

characteristic: sample derived from

text: Bacteroides xylanisolvens

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840052_bin.4_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840059 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Phascolarctobacterium sp.

characteristic: project name

text: uncultured Phascolarctobacterium sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840059_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840063 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides caccae

characteristic: organism

characteristic: sample derived from

text: Bacteroides caccae

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides caccae

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840063_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840078 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Bacteroides sp.

text: The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.

characteristic: project name

text: uncultured Bacteroides sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840078_bin.1_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840082 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Marvinbryantia sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Marvinbryantia sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Marvinbryantia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840082_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840084 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Bacteroides eggerthii

characteristic: project name

text: Bacteroides eggerthii

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides eggerthii

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840084_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Paraprevotella clara

characteristic: organism

characteristic: sample derived from

text: Paraprevotella clara

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Paraprevotella;s__Paraprevotella clara

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840084_bin.6_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840088 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840088_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Roseburia sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Roseburia sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Roseburia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840088_bin.5_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840090 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Alistipes sp.

text: The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.

characteristic: project name

text: uncultured Alistipes sp.

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840090_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840090_bin.3_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840091 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Faecalibacterium prausnitzii

characteristic: project name

text: Faecalibacterium prausnitzii

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Faecalibacterium;s__Faecalibacterium prausnitzii

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840091_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840097 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides xylanisolvens

characteristic: organism

characteristic: sample derived from

text: Bacteroides xylanisolvens

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840097_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Bacteroides cellulosilyticus

characteristic: project name

text: Bacteroides cellulosilyticus

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides cellulosilyticus

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840097_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840100 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides stercoris

characteristic: organism

characteristic: sample derived from

text: Bacteroides stercoris

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides stercoris

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840100_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840102 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Bacteroides thetaiotaomicron

text: The objective of this study was to determine microbial regulation of proteolytic activity in intestinal tract using phenotype of post-infection irritable bowel syndrome, a condition characterized by high fecal proteolytic activity.

characteristic: project name

text: Bacteroides thetaiotaomicron

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840102_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: Flavonifractor plautii

characteristic: organism

characteristic: sample derived from

text: Flavonifractor plautii

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Flavonifractor;s__Flavonifractor plautii

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840102_bin.4_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: Bacteroides xylanisolvens

characteristic: project name

text: Bacteroides xylanisolvens

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840102_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840103 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840103_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840109 of study SRP309043.

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13840109_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13840114 of study SRP309043.

characteristic: description

text: feces

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroides sp.

characteristic: organism

characteristic: sample derived from

text: uncultured Bacteroides sp.

text: Illumina HiSeq 4000

text: The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides plebeius

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13840114_bin.1_metawrap_v1.3_MAG

characteristic: title