text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1288

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Clinical

characteristic: Submitter Id

text: Microbe sample from Enterococcus cecorum CIRMBP-1289

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Brittany

characteristic: geographic location (region and locality)

text: Gallus gallus

characteristic: host scientific name

text: Broiler

text: Enterococcus cecorum

characteristic: organism

text: Enterococcus cecorum

text: Joint

characteristic: title


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1290

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Bone-marrow


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1291

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1292

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Liver


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1293

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1294

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Vertebras


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1295

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Heart


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1296

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Heart


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1297

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1298

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1299

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1300

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1301

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1302

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1303

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CIRMBP-1304

text: France

text: Brittany

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Joint


text: INRAE

text: public

text: Commensal

text: Microbe sample from Enterococcus cecorum CE1 resequenced as CIRMBP-1307

text: USA

text: Southeast

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Gut


text: INRAE

text: public

text: Commensal

text: Microbe sample from Enterococcus cecorum CE2 resequenced as CIRMBP-1308

text: USA

text: Southeast

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Gut


text: INRAE

text: public

text: Commensal

text: Microbe sample from Enterococcus cecorum CE3 resequenced as CIRMBP-1309

text: USA

text: Southeast

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Gut


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum SA1 resequenced as CIRMBP-1310

text: USA

text: Southeast

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Bone-marrow


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum SA2 resequenced as CIRMBP-1311

text: USA

text: Southeast

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Bone-marrow


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum SA3 resequenced as CIRMBP-1312

text: USA

text: Southeast

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Bone-marrow


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CB-32 resequenced as CIRMBP-1313

text: Poland

text: Greater Poland

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum BB-66 resequenced as CIRMBP-1314

text: Poland

text: Opolskie

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum CL-1 resequenced as CIRMBP-1315

text: Poland

text: Greater Poland

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum

text: Enterococcus cecorum


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum G-29 resequenced as CIRMBP-1316

text: Poland

text: Greater Poland

text: Gallus gallus

text: Goose

text: Enterococcus cecorum

text: Enterococcus cecorum


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum D-104 resequenced as CIRMBP-1317

text: Poland

text: Anas platyrhynchos

text: Duck

text: Enterococcus cecorum

text: Enterococcus cecorum


DSM 20682

text: INRAE

text: public

text: Commensal

text: DSM 20682

text: Microbe sample from Enterococcus cecorum DSM 20682 resequenced as CIRMBP-1318

text: Belgium

text: Gallus gallus

text: Broiler

text: Enterococcus cecorum DSM 20682 = ATCC 43198

text: Gut


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum 1212-11909 resequenced as CIRMBP-1319

text: Belgium

text: Homo sapiens

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Blood


text: INRAE

text: public

text: Clinical

text: Microbe sample from Enterococcus cecorum B05581 resequenced as CIRMBP-1320

text: Germany

text: Homo sapiens

text: Enterococcus cecorum

text: Enterococcus cecorum

text: Blood


text: public

tag: Namespace:Perinatal laboratory at the Centre for Perinatal Medicine & Health

text: not provided

characteristic: collection date

text: Vaginal metatranscriptome preterm

text: human

characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

text: swab

characteristic: environment (material)

text: Sweden

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metatranscriptome

characteristic: investigation type

text: human vaginal metagenome

text: Microbial transcriptome in vaginal fluid at midgestation: association with spontaneous preterm delivery

characteristic: project name

text: human vaginal metagenome

text: Illumina NovaSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Perinatal laboratory at the Centre for Perinatal Medicine & Health

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Vaginal metatranscriptome preterm

text: human

text: vagina

text: swab

text: Sweden

text: human-vaginal

text: metatranscriptome

text: human vaginal metagenome

text: human vaginal metagenome

text: Illumina NovaSeq


text: public

text: not provided

characteristic: collection date

text: Vaginal metatranscriptome term

characteristic: description

text: human

characteristic: environment (biome)

text: vagina

characteristic: environment (feature)

text: swab

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: human-vaginal

text: metatranscriptome

text: human vaginal metagenome

characteristic: organism

text: human vaginal metagenome

text: Illumina NovaSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Cells were extracted from lungs and subsequently sample was enriched for immune cells using CD45 microbeads from Miltenyi, and with flow cytometry. H3K27me3 and H3K27ac were profiled from sorted DC using modified CUT&RUN protocol.(Skene and Henikoff 2017) Nuclei were extracted from 200.000 sorted cells. Cells were collected by centrifugation (500g, 5min 4ºC) and gently resuspended in 50ul lysis buffer containing 10mM Tris pH 7.4, 10mM NaCl, 3mM MgCl2, 1% BSA, 0.1% Tween-20, 0.1% IGEPAL, 0.01% Digitonin (Promega), 1mM DTT, 1x cOmplete protease inhibitor and incubated on ice for 3min. Then we added 50 ul of wash buffer containing 10mM Tris pH 7.4, 10mM NaCl, 3mM MgCl2, 1% BSA, 0.1% Tween-20, 0.1%, 1mM DTT, 1x cOmplete. Nuclei were collected by centrifugation (500g, 5min 4ºC) and resuspended in 100 µl room temperature NE Buffer. 5µl/sample Concanavalin A (ConA) beads (Epicypher) were activated by washing twice with 100ul/10ul of beads of cold Bead Activation Buffer (20mM HEPES pH 7.9, 10mM KCl, 1mM CaCl2, 1mM MnCl2). Beads were resuspended in 10µl/sample cold Bead Activation Buffer. Nuclei were incubated with concanavalin beads at room temperature for 10 min. Beads were placed on the magnet, supernatant was removed and nuclei were resuspended in 50 µl of cold wash buffer (20mM HEPES pH 7.5, 150mM NaCl, 0.5mM spermidine, 1x cOmplete, 2mM EDTA). 0.5ul of primary antibody (H3K27me3 antibody, C36B11, Cell Signalling; H3K27ac antibody, D5E4, Cell Signalling; Isotype control antibody, DA1E, Cell Signalling) was added to each sample and incubated at the nutator at 4C overnight. Beads were placed on the magnet, supernatant was removed and nuclei were resuspended in 50ul of digitonin buffer (20mM HEPES pH 7.5, 150mM NaCl, 0.5mM spermidine, 1x cOmplete, 0.01% Digitonin, 2mM EDTA) and 0.5µg of anti-rabbit secondary antibody, epicypher was added, mixed and incubated for 30min at room temperature. While beads were on magnet they were washed with 200 µl of cold digitonin buffer twice and then resuspended in 50ul of high salt digitonin buffer (20mM HEPES pH 7.5, 300mM NaCl, 0.5mM spermidine, 1x cOmplete, 0.01% Digitonin, 2mM EDTA), 2.5 µl of pAG-Tn5 (Epicypher) to each sample, vortexed and incubated for 1h at room temperature. Nuclei were then washed twice with high salt digitonin buffer and 50µl of cold tagmentation buffer was added (20mM HEPES pH 7.5, 300mM NaCl, 10mM MgCl2, 0.5mM spermidine, 1x cOmplete) and incubated for 1h at 37ºC. After tagmentation, nuclei were washed with 50µl of 10mM TAPS pH 8.5 with 0.2mM EDTA. To release DNA fragments, 5ul of 10mM TAPS pH 8.5 with 0.1% SDS was added to nuclei and incubated for 1h at 58C. Later, 15ul of 0.67% Triton-X were added to neutralise SDS. I nto 20ul of sample 25ul of non-hot start CUTANA High Fidelity 2x PCR Master Mix and 2ul each of i5 and i7 primers (Illumina) were added and incubated at 58ºC for 5 min, at 72ºC for 5 minutes, at 98ºC for 45 minutes and then 18 cycles of 15s 98ºC and 10s 60ºC, followed by final extension at 72ºC for 1 min. Libraries were cleaned up using 1.3x AMPure beads as per manufacturer’s recommendations and eluted in 15ul of TE buffer.

text: adult

characteristic: developmental stage

text: Akita

characteristic: genotype

text: pool of mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: wild type genotype

text: pool of mice

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: dendritic cell

text: eastern European house mouse

text: Protocols: Cells were extracted from lungs and subsequently sample was enriched for immune cells using CD45 microbeads from Miltenyi, and with flow cytometry. Libraries were prepared according to Chromium Next GEM Single Cell ATAC Reagent Kits v1.1 guide Libraries were prepared according to Chromium Next GEM Single Cell ATAC Reagent Kits v1.1 guide

text: adult

text: Akita

text: Mus musculus musculus

characteristic: organism

text: Mus musculus musculus

text: lung

text: Mus musculus musculus

text: male

text: hyperglycemia

characteristic: stimulus

text: Akita

characteristic: title


E-MTAB-11392:Akita 2

text: WIS

text: public

text: E-MTAB-11392:Akita 2

text: ArrayExpress

text: dendritic cell

text: eastern European house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: Akita

characteristic: genotype

text: Mus musculus musculus

text: Mus musculus musculus

text: lung

characteristic: organism part

text: Mus musculus musculus

text: male

characteristic: sex

text: hyperglycemia

characteristic: strain

text: Akita 2


E-MTAB-11392:Akita 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11392:Akita 3

text: ArrayExpress

text: dendritic cell

text: eastern European house mouse

text: adult

text: Akita

text: Mus musculus musculus

text: Mus musculus musculus

text: lung

text: Mus musculus musculus

text: male

text: hyperglycemia

text: Akita 3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WIS

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: dendritic cell

text: eastern European house mouse

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus musculus

text: Mus musculus musculus

text: lung

text: Mus musculus musculus

text: male

text: hyperglycemia

text: WT


E-MTAB-11392:WT 2

text: WIS

text: public

text: E-MTAB-11392:WT 2

text: ArrayExpress

characteristic: broker name

text: dendritic cell

text: eastern European house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

text: Mus musculus musculus

characteristic: organism

text: Mus musculus musculus

text: lung

text: Mus musculus musculus

text: male

text: hyperglycemia

characteristic: stimulus

text: WT 2

characteristic: title


E-MTAB-11392:WT 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WIS

text: public

text: E-MTAB-11392:WT 3

text: ArrayExpress

text: dendritic cell

text: eastern European house mouse

text: adult

text: wild type genotype

characteristic: genotype

text: Mus musculus musculus

text: Mus musculus musculus

text: lung

characteristic: organism part

text: Mus musculus musculus

text: male

characteristic: sex

text: hyperglycemia

characteristic: strain

text: WT 3


E-MTAB-11397:1 CD4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11397:1 CD4

tag: Namespace:Kennedy institute of Rheumatology, University of Oxford

text: ArrayExpress

text: T cell

text: house mouse

text: Protocols: Colonic lamina propria lymphocytes were isolated by EDTA treatment, collagenase digestion, and 3 layer percol per standard Powrie lab protocols. Cells were stained with antibody cocktail (see lab notebook 2018 27 and 29/07/2018) and sorted into CD127+ DN T cells, MAIT, NKT, and CD127+CD4 and Cbir DN populations. Cells were sorted into 300ul of RLT and frozen until RNA extration. Qiagen RNAeasy Micro Kit with DNAse treatment Smart-Seq2 following manufacturers instructions followed by our own Nextera indexing primers during amplification, dual indexing tags are based on this paper (DOI: 10.1186/1472-6750-13-104). Amplified libraries were analysed for size distribution using the Agilent Tapestation 2200 D1000. Libraries were quantified using Picogreen and relative volumes were pooled accordingly.

text: adult

text: wild type genotype

text: CD127+ CD25- CD4 T cell

characteristic: immunophenotype

text: pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 1 CD4


E-MTAB-11397:1 DN

text: Kennedy institute of Rheumatology, University of Oxford

text: public

characteristic: SRA accession

text: E-MTAB-11397:1 DN

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: CD127+ DN T cell

text: pool 1

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 1 DN


E-MTAB-11397:1 MAIT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:1 MAIT

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

characteristic: genotype

text: MR1 tet+

text: pool 1

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: 1 MAIT

characteristic: title


E-MTAB-11397:1 NKT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11397:1 NKT

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD1d tet+

characteristic: immunophenotype

text: pool 1

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 1 NKT


E-MTAB-11397:1 Cbir DN

text: public

characteristic: SRA accession

text: E-MTAB-11397:1 Cbir DN

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Cbir Rag-/-

text: DN T cell

text: pool 2

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: Cbir Rag-/-

text: 1 Cbir DN


E-MTAB-11397:2 CD4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:2 CD4

text: ArrayExpress

text: T cell

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: CD127+ CD25- CD4 T cell

text: pool 3

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: 2 CD4


E-MTAB-11397:2 DN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:2 DN

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD127+ DN T cell

text: pool 3

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: 2 DN

characteristic: title


E-MTAB-11397:2 MAIT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11397:2 MAIT

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: MR1 tet+

characteristic: immunophenotype

text: pool 3

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 2 MAIT


E-MTAB-11397:2 NKT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:2 NKT

text: ArrayExpress

text: T cell

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: CD1d tet+

text: pool 3

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 2 NKT


E-MTAB-11397:2 Cbir DN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:2 Cbir DN

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: Cbir Rag-/-

text: DN T cell

text: pool 4

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Cbir Rag-/-

text: 2 Cbir DN


E-MTAB-11397:3 CD4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11397:3 CD4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD127+ CD25- CD4 T cell

text: pool 5

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: 3 CD4

characteristic: title


E-MTAB-11397:3 DN

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:3 DN

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: CD127+ DN T cell

characteristic: immunophenotype

text: pool 5

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 3 DN


E-MTAB-11397:3 MAIT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:3 MAIT

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: MR1 tet+

text: pool 5

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 3 MAIT


E-MTAB-11397:3 NKT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11397:3 NKT

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD1d tet+

text: pool 5

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: 3 NKT


E-MTAB-11397:3 Cbir DN

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:3 Cbir DN

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Cbir Rag-/-

text: DN T cell

text: pool 6

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: female

text: Cbir Rag-/-

characteristic: strain

text: 3 Cbir DN

characteristic: title


E-MTAB-11397:4 CD4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:4 CD4

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

characteristic: genotype

text: CD127+ CD25- CD4 T cell

characteristic: immunophenotype

text: pool 7

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 4 CD4


E-MTAB-11397:4 DN

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11397:4 DN

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD127+ DN T cell

text: pool 7

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 4 DN


E-MTAB-11397:4 MAIT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:4 MAIT

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: MR1 tet+

text: pool 7

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: 4 MAIT


E-MTAB-11397:4 NKT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:4 NKT

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD1d tet+

text: pool 7

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: 4 NKT

characteristic: title


E-MTAB-11397:4 Cbir DN

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11397:4 Cbir DN

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: adult

text: Cbir Rag-/-

characteristic: genotype

text: DN T cell

characteristic: immunophenotype

text: pool 8

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: female

text: Cbir Rag-/-

text: 4 Cbir DN


E-MTAB-11397:5 CD4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:5 CD4

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: CD127+ CD25- CD4 T cell

text: pool 9

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 5 CD4


E-MTAB-11397:5 DN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:5 DN

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: CD127+ DN T cell

text: pool 9

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: 5 DN


E-MTAB-11397:5 MAIT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11397:5 MAIT

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: T cell

text: house mouse

text: adult

text: wild type genotype

text: MR1 tet+

text: pool 9

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: 5 MAIT

characteristic: title


E-MTAB-11397:5 NKT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11397:5 NKT

text: ArrayExpress

text: T cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: CD1d tet+

characteristic: immunophenotype

text: pool 9

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: 5 NKT


E-MTAB-11397:5 Cbir DN

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11397:5 Cbir DN

text: ArrayExpress

text: T cell

text: house mouse

text: adult

text: Cbir Rag-/-

text: DN T cell

text: pool 10

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: Cbir Rag-/-

text: 5 Cbir DN


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Agriculture, Food Environment and Forestry (DAGRI) - University of Florence

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

text: H3402 grafted on Tomito

characteristic: cultivar

text: Protocols: Leaf samples were harvested at flowering stage, 35 days after inoculations, from three plants for each treatment (control, inoculated with AB, inoculated with PG), frozen in liquid nitrogen and stored at −80 °C Two weeks after grafting, seedlings were transplanted in pots (6.5 cm x 8.0 cm x 5.5 cm) filled with neutral peat (23% organic carbon, 0.5% nitrogen, pH 6, electrical conductivity 0.25 dS m-1, and dry apparent density 214 kg m-3; Dueemme S.r.l., Reggio Emilia, Italy). After inoculations, seedlings were grown in a growth chamber located at the University of Modena and Reggio Emilia (Reggio Emilia, Italy) with a photoperiod of 16 h light and 8 h dark and the day/night temperatures of 25/19°C. Seedlings were watered every two days with 50 mL of water per pot. Compo BIO fluid stillage (organic nitrogen 3%, potassium oxide 6% and organic carbon 10%, COMPO ITALIA S.R.L (Cesano Maderno, Italy) was added to the irrigation water (10 mL L-1) once a week for two weeks. A fully randomized experimental design with ten biological replicates per treatment were adopted. Immediately after transplanting, bacterial treatments with Azospirillum brasiliensis sp.245 (AB) and Paraburkholderia graminis C4D1M (PG), belonging to CREA GB's collection, were performed by adding 1 mL of inoculum (107 colony forming unit (CFU) mL-1) close to the seedlings’s root collars Frozen samples were pulverized in a sterile mortar using liquid nitrogen, and the total RNAs were extracted from ground tissues using Nucleospin® RNA plant kit (Macherey-Nagel, Duren, Germany) according to manufacturer instructions, and eluted in 60 µL of RNase-free water The nine high-quality RNA samples were sent in dry ice to Novogene company (UK sequencing centre, Cambridge) for libraries construction

text: flower development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

characteristic: organism part

characteristic: replicate

text: Solanum lycopersicum


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Agriculture, Food Environment and Forestry (DAGRI) - University of Florence

text: public

text: ArrayExpress

text: tomato

characteristic: common name

text: H3402 grafted on Tomito

characteristic: description

text: flower development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62330:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

tag: Namespace:Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

text: GFBIO

characteristic: collection date

text: coastal water with size fractionation between 0.2 and 3um

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Sweden

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Preparing 16S Ribosomal RNA Gene Amplicons for the Illumina MiSeq System. libraries: Primers were chosen in accordance with the Earth Microbiome Project (https://earthmicrobiome.org/). Primer targeting the V4F for the 18S rRNA gene (Stoeck et al., 2010)

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62329:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: description

text: marine biome [ENVO:00000447]

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Sweden

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62328:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: collection date

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62327:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: marine biome [ENVO:00000447]

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Sweden

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62326:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Sweden

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62325:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: marine biome [ENVO:00000447] | polar biome [ENVO:01000339]

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62324:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

text: Norway

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62323:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62322:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62321:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Norway

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62320:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62319:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62318:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

text: Norway

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62317:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62316:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

text: coastal water with size fractionation between 0.2 and 3um

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62315:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Norway

text: mimarks-survey

text: Preparing 16S Ribosomal RNA Gene Amplicons for the Illumina MiSeq System. libraries: Primers were chosen in accordance with the Earth Microbiome Project (https://earthmicrobiome.org/). Primer targeting the V4F for the 18S rRNA gene (Stoeck et al., 2010)

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62314:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62313:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62312:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

text: Norway

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to insdc

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 62311:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

characteristic: Submitter Id

text: GFBIO

text: marine biome [ENVO:00000447] | polar biome [ENVO:01000339]

text: microbial community [ENVO:01000007]

text: coastal sea water [ENVO:00002150]

text: water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 62310:4e5d347f-5e7b-4975-bdcc-e7422f2b8092

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: environment (biome)

text: microbial community [ENVO:01000007]

characteristic: environment (feature)

text: coastal sea water [ENVO:00002150]

characteristic: environment (material)

text: water

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


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