text: University Hospital Ostrava

text: public

text: human

text: COL4A4, c.1598G>A, p.Gly533Asp and c.3514_3515delinsTGAAA, p.Gly1172Ter, compound heterozygous

characteristic: description

text: Y

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Ostrava

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital Ostrava

characteristic: Submitter Id

text: human

characteristic: common name

text: COL4A3, c.415G>C, p.Gly139Arg homozygous

text: Y

characteristic: germline

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: title


text: University Hospital Ostrava

text: public

text: human

text: COL4A4, c.1598G>A, p.Gly533Asp heterozygous

text: Y

text: Homo sapiens

text: Homo sapiens

text: blood


text: University Hospital Ostrava

text: public

text: human

text: COL4A3, c.415G>C, p.Gly139Arg heterozygous

text: Y

text: Homo sapiens

text: Homo sapiens

text: blood


text: UCSDMI

text: public

characteristic: cage

text: fecal sample from mouse m101

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: t-cell-depletion-of-RGDOX-Indoximod-GL261-5-TTN

characteristic: experiment

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

characteristic: n

text: mouse gut metagenome

text: Microbial Ecology and Genomics Lab RCM San Juan PR

text: True

text: COMBINATION_OF_VIROIMMUNOTHERAPY_AND_MICROBIOTA_MODULATION_TO_TREAT_GLIOMA

text: feces

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: fecal sample from mouse m102

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

characteristic: organism

text: True

text: feces

text: mouse gut metagenome

text: male


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fecal sample from mouse m972

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male


text: UCSDMI

text: public

characteristic: cage

text: fecal sample from mouse m974

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: fecal sample from mouse m975

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

characteristic: n

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: fecal sample from mouse m949

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

text: PBS


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fecal sample from mouse m950

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

characteristic: organism

text: True

text: feces

text: mouse gut metagenome

text: male

text: PBS


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: cage

text: fecal sample from mouse m954

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

text: PBS


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: fecal sample from mouse m955

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

characteristic: n

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: title

text: PBS


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: fecal sample from mouse m956

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: PBS


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: still alive 2020-11-11

text: fecal sample from mouse m117

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: cage

text: fecal sample from mouse m118

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

characteristic: gender

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

characteristic: organism

text: True

text: feces

text: mouse gut metagenome

text: male


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: still alive 2020-11-11

text: fecal sample from mouse m119

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

characteristic: n

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: still alive 2020-11-11

text: fecal sample from mouse m120

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: title


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: still alive 2020-11-11

text: fecal sample from mouse m121

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: sex


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: cage

text: fecal sample from mouse m109R

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

characteristic: gender

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: fecal sample from mouse m113

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: True

text: feces

text: mouse gut metagenome

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: fecal sample from mouse m114

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: n

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fecal sample from mouse m116

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: title


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: cage

text: fecal sample from mouse m958R

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 2020-09-17 00:00:00

text: fecal sample from mouse Indox351

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: GSC-005-murine-glioma-tumor-injection-IC

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

characteristic: room

text: feces

text: mouse gut metagenome

text: male

text: Indoximod


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2020-09-18 00:00:00

text: fecal sample from mouse Indox353

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

characteristic: organism

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

text: male

text: Indoximod


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2020-09-20 00:00:00

text: fecal sample from mouse Indox365

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

text: male

characteristic: title

text: Indoximod


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: cage

text: 2020-09-16 00:00:00

text: fecal sample from mouse Indox367

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: Indoximod


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 2020-09-21 00:00:00

text: fecal sample from mouse Indox368

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

text: male

text: Indoximod


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2020-09-03 00:00:00

text: NA: Naïve Mouse

text: fecal sample from mouse NFL

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Female

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: NFL

text: not provided

text: g

text: Left Eartag

text: mouse gut metagenome

text: True

characteristic: room

text: feces

text: mouse gut metagenome

text: female

text: Naive Mice: no tumor, no treatment


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2020-09-03 00:00:00

text: NA: Naïve Mouse

text: fecal sample from mouse NFR

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Female

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: NFR

text: not provided

text: g

text: Right Eartag

text: mouse gut metagenome

characteristic: organism

text: True

text: feces

text: mouse gut metagenome

text: female

text: Naive Mice: no tumor, no treatment


text: UCSDMI

text: public

characteristic: Submitter Id

text: 2020-09-12 00:00:00

characteristic: cage

text: NA: Naïve Mouse

text: fecal sample from mouse NML

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: NML

text: not provided

text: g

text: Left Eartag

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: title

text: Naive Mice: no tumor, no treatment


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 2020-09-12 00:00:00

text: NA: Naïve Mouse

text: fecal sample from mouse NMN

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: NMN

text: not provided

text: g

characteristic: latitude

text: No Eartag

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: Naive Mice: no tumor, no treatment


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2020-09-12 00:00:00

text: NA: Naïve Mouse

text: fecal sample from mouse NMR

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: NMR

text: not provided

text: g

characteristic: longitude

text: Right Eartag

text: mouse gut metagenome

text: True

text: feces

text: mouse gut metagenome

text: male

text: Naive Mice: no tumor, no treatment


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2020-09-15 00:00:00

text: fecal sample from mouse PBS340

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

characteristic: room

text: feces

text: mouse gut metagenome

text: male

text: PBS


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: cage

text: 2020-09-18 00:00:00

text: fecal sample from mouse PBS345

characteristic: description

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

characteristic: experiment

text: Male

text: Mus musculus

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

text: mouse gut metagenome

characteristic: organism

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

text: male

text: PBS


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: 2020-09-16 00:00:00

text: fecal sample from mouse PBS346

text: True

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

characteristic: gender

text: Mus musculus

characteristic: host scientific name

text: not provided

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: latitude

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

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characteristic: title

text: PBS


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2020-09-26 00:00:00

text: fecal sample from mouse PBSNE

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text: Host-associated

text: Animal-associated

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text: urban biome

text: research facility

text: feces

text: host-associated

text: Male

text: Mus musculus

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text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: PBSNE

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text: g

text: No Eartag

text: mouse gut metagenome

text: True

text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

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characteristic: INSDC first public

characteristic: INSDC last update

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text: 2021-02-04 00:00:00

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text: Host-associated

text: Animal-associated

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text: feces

text: host-associated

text: Male

text: Mus musculus

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text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: not provided

text: g

characteristic: longitude

text: mouse gut metagenome

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text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

text: mouse gut metagenome

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characteristic: Submitter Id

characteristic: cage

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characteristic: experiment

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text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

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text: g

text: mouse gut metagenome

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text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

characteristic: room

text: feces

text: mouse gut metagenome

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text: RGDOX


characteristic: ENA-CHECKLIST

text: UCSDMI

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text: UBERON:feces

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text: mouse

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characteristic: latitude

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characteristic: organism

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text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

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text: host-associated

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text: mouse gut metagenome

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text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

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text: UBERON:feces

text: UBERON:feces

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text: mouse

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text: mouse gut metagenome

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text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

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characteristic: sex

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text: UBERON:feces

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text: mouse

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characteristic: longitude

text: mouse gut metagenome

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text: 2020-08-03 00:00:00

text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

text: feces

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characteristic: ENA-CHECKLIST

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text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

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characteristic: latitude

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text: 2020-08-05 00:00:00

text: 2020-08-07 00:00:00

characteristic: room

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

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text: ena-SAMPLE-TAB-04-01-2023-06:16:08:340-96677

tag: Namespace:Okinawa Institute of Science and Technology

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text: thale cress

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text: Bisulfite sequencing of Arabidopsis thaliana Col-0

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text: Arabidopsis thaliana

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text: Arabidopsis thaliana


text: Okinawa Institute of Science and Technology

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text: ena-SAMPLE-TAB-04-01-2023-06:16:34:326-96679

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text: ena-SAMPLE-TAB-04-01-2023-06:16:42:315-96681

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text: Arabidopsis thaliana


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107844

tag: Namespace:Shiga University of Medical Science

text: Blood cells

text: crab-eating macaque

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text: Macaca fascicularis

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text: LDLR KO

characteristic: strain

text: Exon2 4bp deletion


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107845

text: Blood cells

text: crab-eating macaque

text: Blood sample

text: Macaca fascicularis

text: Macaca fascicularis

text: LDLR KO

text: Exon2 20bp deletion


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107846

text: Blood cells

text: crab-eating macaque

text: Blood sample

text: Macaca fascicularis

text: Macaca fascicularis

text: LDLR KO

text: Exon4 Large substitution


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107847

text: Blood cells

text: crab-eating macaque

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text: Macaca fascicularis

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text: Exon4 25bp deletion


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107848

text: Blood cells

text: crab-eating macaque

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text: Exon4 3bp deletion


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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107849

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: Shiga University of Medical Science

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text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107850

text: Blood cells

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text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107851

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107852

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: LDLR KO

text: Exon4 25bp deletion


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107853

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: Exon4 25bp deletion


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107854

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107855

text: Blood cells

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text: Blood sample

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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107856

text: Blood cells

text: crab-eating macaque

text: Blood sample

text: Macaca fascicularis

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text: Exon2 4bp deletion-2


text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107857

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: Shiga University of Medical Science

text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107858

text: Blood cells

text: crab-eating macaque

text: Blood sample

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text: LDLR KO

text: Exon2 3bp insertion


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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107859

text: Blood cells

text: crab-eating macaque

text: Blood sample

text: Macaca fascicularis

text: Macaca fascicularis

text: LDLR KO

text: Exon4 4bp deletion


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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107860

text: Blood cells

text: crab-eating macaque

text: Blood sample

text: Macaca fascicularis

text: Macaca fascicularis

text: LDLR KO

text: Exon2 37bp insertion


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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107861

text: Blood cells

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text: Macaca fascicularis

text: LDLR KO

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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107862

text: Blood cells

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text: Exon4 5bp deletion


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text: public

text: ena-SAMPLE-TAB-04-01-2023-07:45:42:880-107863

text: Blood cells

text: crab-eating macaque

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text: LDLR KO

text: Exon2 3bp insertion


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

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text: restricted access

characteristic: host subject id

characteristic: isolate

text: Lysis

characteristic: isolation source host-associated

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characteristic: External Id

text: Dutch COVID-19 response team

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Zeeland

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text: not collected

text: Homo sapiens

text: not provided

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text: Lysis

characteristic: organism

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

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characteristic: broker name

text: not provided

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text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

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text: Homo sapiens

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characteristic: host subject id

text: Lysis

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC status

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

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characteristic: isolate

text: Throat/Nasal

characteristic: isolation source host-associated


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

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characteristic: broker name

text: not provided

characteristic: collecting institution

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text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

text: Throat/Nasal

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: LIV

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: liver fluke

text: Adult fluke S strain, sensitive

text: Ovis aries

text: Fasciola hepatica

text: Fasciola hepatica

characteristic: title


text: public

text: 8692fa63feac98d31f6d2c7fb9a7c8bc_resub01

tag: Namespace:COPSAC, Copenhagen Prospective Studies on Asthma in Childhood

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text: Human upper airway

characteristic: broad-scale environmental context

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text: human

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text: Nasopharyngeal swab

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text: Human upper airway

characteristic: environmental medium

text: Denmark

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: COPSAC2000 1m nasopharynx swabs

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text: real samples

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text: COPSAC, Copenhagen Prospective Studies on Asthma in Childhood

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text: 418458f74eb3b1b709bafc3bd21894ff_resub01

text: Human upper airway

text: human

text: Nasopharyngeal swab

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text: Denmark

characteristic: geographic location (country and/or sea)

text: Nasopharyngeal swab

text: Homo sapiens

characteristic: organism

text: COPSAC2000 1m nasopharynx swabs

text: real samples

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