status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WDRC KAUST

characteristic: Submitter Id

characteristic: collection date

text: MABRbiofilm_cDNA_day15_control_feedWW_B1

characteristic: common name

text: cDNA of control MABR biofilm-Reactor B1 fed with wastewater, sampled 22 Feb 2021

characteristic: description

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: scientific name

text: Municipal wastewater treatment plant

characteristic: sewage type

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day15_control_feedWW_B2

text: cDNA of control MABR biofilm-Reactor B2 fed with wastewater, sampled 22 Feb 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MABRbiofilm_cDNA_day30_control_feedWW_B1

text: cDNA of control MABR biofilm-Reactor B1 fed with wastewater, sampled 9 March 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MABRbiofilm_cDNA_day30_control_feedWW_B2

text: cDNA of control MABR biofilm-Reactor B2 fed with wastewater, sampled 9 March 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

text: MABRbiofilm_cDNA_day60_control_feedWW_B1

characteristic: common name

text: cDNA of control MABR biofilm-Reactor B1 fed with wastewater, sampled 8 April 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day60_control_feedWW_B2

text: cDNA of control MABR biofilm-Reactor B2 fed with wastewater, sampled 8 April 2021

characteristic: description

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day90_control_feedWW_B1

text: cDNA of control MABR biofilm-Reactor B1 fed with wastewater, sampled 8 May 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: scientific name

text: Municipal wastewater treatment plant

characteristic: sewage type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day90_control_feedWW_B2

text: cDNA of control MABR biofilm-Reactor B2 fed with wastewater, sampled 8 May 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

characteristic: INSDC center name

text: public

text: MABRbiofilm_cDNA_day120_control_feedWW_B1

text: cDNA of control MABR biofilm-Reactor B1 fed with wastewater, sampled 7 June 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MABRbiofilm_cDNA_day120_control_feedWW_B2

text: cDNA of control MABR biofilm-Reactor B2 fed with wastewater, sampled 7 June 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: MABRbiofilm_cDNA_day15_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 22 Feb 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day15_feedWW&OMPspike_A2

characteristic: common name

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 22 Feb 2021

characteristic: description

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day30_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 9 March 2021

text: Saudi Arabia

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: scientific name

text: Municipal wastewater treatment plant


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day30_feedWW&OMPspike_A2

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 9 March 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant

characteristic: sewage type


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day45_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 24 March 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant

characteristic: title


text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MABRbiofilm_cDNA_day45_feedWW&OMPspike_A2

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 24 March 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MABRbiofilm_cDNA_day60_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 8 April 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

characteristic: collection date

text: MABRbiofilm_cDNA_day60_feedWW&OMPspike_A2

characteristic: common name

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 8 April 2021

characteristic: description

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day75_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 23 April 2021

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: Municipal wastewater treatment plant


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day75_feedWW&OMPspike_A2

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 23 April 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

characteristic: scientific name

text: Municipal wastewater treatment plant


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day90_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 8 May 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant

characteristic: sewage type


text: WDRC KAUST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MABRbiofilm_cDNA_day90_feedWW&OMPspike_A2

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 8 May 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant

characteristic: title


text: WDRC KAUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MABRbiofilm_cDNA_day105_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 23 May 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

characteristic: Submitter Id

characteristic: collection date

text: MABRbiofilm_cDNA_day105_feedWW&OMPspike_A2

characteristic: common name

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 23 May 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day120_feedWW&OMPspike_A1

text: cDNA of MABR biofilm-Reactor A1 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 7 June 2021

characteristic: description

text: Saudi Arabia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

text: wastewater metagenome

text: Municipal wastewater treatment plant


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WDRC KAUST

text: public

text: MABRbiofilm_cDNA_day120_feedWW&OMPspike_A2

text: cDNA of MABR biofilm-Reactor A2 fed with wastewater and spiked with 13OMPs at 50ugL-1, sampled 7 June 2021

text: Saudi Arabia

text: metagenome

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

text: Municipal wastewater treatment plant


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id


text: Klebsiella michiganensis

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella michiganensis

characteristic: title


text: Klebsiella ornithinolytica

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Klebsiella ornithinolytica

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica


text: Klebsiella grimontii

text: SC

text: public

characteristic: Submitter Id

text: Klebsiella grimontii

characteristic: common name

text: Klebsiella grimontii

text: Klebsiella grimontii


text: Klebsiella planticola

text: SC

text: public

text: Klebsiella planticola

text: Raoultella planticola

text: Raoultella planticola


text: Klebsiella terrigena

text: SC

text: public

text: Klebsiella terrigena

text: Raoultella terrigena

text: Raoultella terrigena


text: Klebsiella quasipneumaniae subsp. quasipneumoniae

text: SC

text: public

text: Klebsiella quasipneumoniae subsp. quasipneumoniae


text: Klebsiella quasiterrigena

text: SC

text: public

text: Klebsiella quasiterrigena

text: Raoultella terrigena

text: Raoultella terrigena


text: Klebsiella variicola subsp. variicola

text: SC

text: public

text: Klebsiella variicola subsp. variicola

text: Klebsiella variicola subsp. variicola

text: Klebsiella variicola subsp. variicola


text: SC

text: public

characteristic: scientific name


text: Klebsiella variicola subsp. variicola

text: SC

text: public

text: Klebsiella variicola subsp. variicola

text: Klebsiella variicola subsp. variicola

text: Klebsiella variicola subsp. variicola


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Klebsiella oxytoca

text: SC

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Klebsiella aerogenes

text: SC

text: public

text: Klebsiella aerogenes

text: Klebsiella aerogenes

text: Klebsiella aerogenes


text: Klebsiella ornithinolytica

text: SC

text: public

text: Klebsiella ornithinolytica

text: Raoultella ornithinolytica

text: Raoultella ornithinolytica


text: Klebsiella grimontii

text: SC

text: public

text: Klebsiella grimontii

text: Klebsiella grimontii

text: Klebsiella grimontii


text: Klebsiella michiganensis

text: SC

text: public

text: Klebsiella michiganensis

text: Klebsiella michiganensis

text: Klebsiella michiganensis


text: public

tag: Namespace:Laboratory of Genomics and Bioinformatics Institute of Molecular Genetics of the Czech Academy of Sciences

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: HSCs were sorted using an Influx instrument (BD Biosciences, San Jose, CA, USA), and lysed with Tri Reagent RT (Molecular Research Center, Cincinnati, OH, USA. Mice were sacrificed by cervical dislocation, femurs and tibias were isolated, and crunched using pestle and mortar. After obtaining single-cell suspensions, red blood cells were lysed. WT HSCs were exposed in vivo to WT or CMO BM niche. RNA was isolated using RNEasy MinElute Cleanup Kit (Qiagen, Venlo, Netherlands). Libraries (300 pg per sample) were prepared with SMARTer® Stranded Total RNA-Seq - Pico Input Mammalian library preparation kit v2 (Takara).

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: transplanted into wild type mouse bone marrow niche

characteristic: growth condition

characteristic: individual

text: Mus musculus

text: Mus musculus

text: hematopoietic stem cell

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics Institute of Molecular Genetics of the Czech Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: transplanted into to Pstpip2 mutant bone marrow niche

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hematopoietic stem cell

text: Mus musculus

text: male

text: B

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hematopoietic stem cell

text: Mus musculus

characteristic: scientific name

text: female

text: C


text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: growth condition

characteristic: individual

text: Mus musculus

text: Mus musculus

text: hematopoietic stem cell

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: D


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hematopoietic stem cell

text: Mus musculus

text: female

text: E

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hematopoietic stem cell

text: Mus musculus

characteristic: scientific name

text: female

text: F


text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: growth condition

characteristic: individual

text: Mus musculus

text: Mus musculus

text: hematopoietic stem cell

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: G


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hematopoietic stem cell

text: Mus musculus

text: male

text: H

characteristic: title


text: University of Namur

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Namur

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Normal human epidermal keratinocytes (NHEKs) were isolated from foreskin sample of young donors (less than 7 years) as described (Gilchrest, 1983, doi: 10.1111/1523-1747.ep12541084). Samples were obtained after circumcision following approval by the ethic committee of the Clinique St Luc (Bouge, Belgium). NHEKs were grown in specific keratinocyte serum-free medium (K-SFM) (Invitrogen, 15005042), supplemented with bovine pituitary extract (50 µg/ml) and human recombinant epidermal growth factor (5 ng/ml). For UVB-SIPS model, early passage NHEKs were seeded at low confluence in K-SFM. At 72 h after plating, cells were exposed to UVB radiation through a thin layer of PBS. UVB (NB-UVB) used are generated by a Narrow-Band UVB lamp (Philips, TL20W/01 lamps) with a peak at 311 nm. The emitted radiation was checked under the flask lid using a UVB radiometer with a UVB sensor (Bioblock Scientific). After irradiation, PBS was replaced by K-SFM medium. UVB exposures are repeated three times on a single day with a three-hours interval. Unexposed cells (controls) were kept in the same culture conditions without UVB exposure. Total RNA was extracted using RNeasy mini kit (Qiagen) according to manufacturer’s instructions. RNA integrity was checked with Agilent Bioanalyzer. Sequencing mRNA libraries were prepared using TruSeq® Stranded mRNA library preparation kit (Illumina) with 1 µg of total RNA by condition.

text: juvenile stage

text: normal

characteristic: disease

text: replicating cells

characteristic: environmental history

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

text: 4 to 5

characteristic: passage

unit: day

characteristic: sampling time point

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Namur

text: public

text: ArrayExpress

text: keratinocyte

text: human

characteristic: description

text: juvenile stage

characteristic: developmental stage

text: normal

text: premature replicative senescence

text: wild type genotype

characteristic: genotype

characteristic: individual

text: UVB at 311 nm

characteristic: irradiate

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

characteristic: organism part

text: 4 to 5

text: Homo sapiens

text: male

characteristic: sex


characteristic: External Id

text: University of Namur

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: keratinocyte

text: human

text: juvenile stage

text: normal

text: replicative senescence

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of prepuce of penis

text: 12 to 14

unit: month

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Namur

text: public

text: ArrayExpress

text: keratinocyte

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: juvenile stage

text: normal

characteristic: disease

text: replicating cells

characteristic: environmental history

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

text: 4 to 5

characteristic: passage

characteristic: sampling time point

text: Homo sapiens

text: male


text: Escherichia coli H10407_1968

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Escherichia coli H10407_1968

text: Escherichia coli H10407_1968

text: Escherichia coli H10407_1968

characteristic: scientific name

characteristic: subject id


E-MTAB-10995:Sample 1

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 1

tag: Namespace:WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

characteristic: Submitter Id

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The mice were sacrificed and the fecal samples were collected. Mice were housed in an enhanced barrier specific pathogen-free facility under a strict 12-hour light cycle. Mice were maintained on a C57BL/6 background. All study protocols were approved by the Washington University Animal Studies Committee. Mice were fed irradiated standard diet (PicoLab Rodent Chow 20, Purina Mills) or western diet (Research Diets D09100301; with calories provided by 40% carbohydrates, 40% fat, and 20% protein). DNA was isolated using Qiagen QIAmp DNA Stool Kit, according to the kit protocol. Total DNA concentration and purity was obtained from an absorbance ratio at 260nm and 280nm. 14 PCR amplicons, representing all 9 16S variable regions, were constructed using the Fluidigm Access Array System. 5ng/ul of DNA were input into each reaction. The sample inlets consisted of 1X High Fidelity FastStart Reaction Buffer without MgCl2 (Roche), 4.5nM MgCl2 (Roche), 5% DMSO (Roche), 200uM PCR Grade Nucleotide Mix (Roche), 0.05 U/μL 5 U/μL FastStart High Fidelity Enzyme Blend (Roche), 1X Access Array Loading Reagent (Fluidigm), 1ul DNA, and water. The primers were added to the assay inlets at 200nM forward and reverse primers with 1X Access Array Loading Reagent. The samples were harvested after PCR amplification was performed on the BioMark HD system from Fluidigm. Each sample was harvested and indexed using unique 10 base pair sequences with 14 rounds of PCR to incorporate each index sequence. All samples were pooled into 48 sample libraries and cleaned using bead purification.

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: wild type genotype

characteristic: genotype

text: group A

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-10995:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10995:Sample 2

text: 8 weeks

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: standard diet

text: wild type genotype

text: group A

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 2


E-MTAB-10995:Sample 3

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 3

characteristic: Submitter Id

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

text: standard diet

text: wild type genotype

text: group A

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 3


E-MTAB-10995:Sample 4

text: public

text: E-MTAB-10995:Sample 4

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

characteristic: diet

text: wild type genotype

characteristic: genotype

text: group A

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 4


E-MTAB-10995:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10995:Sample 5

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group A

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 5

characteristic: title


E-MTAB-10995:Sample 6

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 6

characteristic: Submitter Id

text: 8 weeks

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: western diet

text: wild type genotype

text: group B

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 6


E-MTAB-10995:Sample 7

text: public

text: E-MTAB-10995:Sample 7

text: 8 weeks

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

characteristic: developmental stage

text: western diet

characteristic: diet

text: wild type genotype

characteristic: genotype

text: group B

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 7


E-MTAB-10995:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 8

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

text: group B

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 8


E-MTAB-10995:Sample 9

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 9

characteristic: Submitter Id

text: 8 weeks

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

text: group B

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 9

characteristic: title


E-MTAB-10995:Sample 10

text: public

text: E-MTAB-10995:Sample 10

text: 8 weeks

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

characteristic: diet

text: wild type genotype

characteristic: genotype

text: group B

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 10


E-MTAB-10995:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 11

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group C

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 11


E-MTAB-10995:Sample 12

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 12

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group C

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 12


E-MTAB-10995:Sample 13

text: public

text: E-MTAB-10995:Sample 13

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: wild type genotype

text: group C

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 13

characteristic: title


E-MTAB-10995:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 14

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

characteristic: genotype

text: group C

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 14


E-MTAB-10995:Sample 15

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 15

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group C

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 15


E-MTAB-10995:Sample 16

text: public

text: E-MTAB-10995:Sample 16

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

text: wild type genotype

text: group D

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 16


E-MTAB-10995:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 17

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

characteristic: diet

text: wild type genotype

text: group D

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 17

characteristic: title


E-MTAB-10995:Sample 18

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 18

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

characteristic: genotype

text: group D

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 18


E-MTAB-10995:Sample 19

text: public

text: E-MTAB-10995:Sample 19

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

text: wild type genotype

text: group D

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 19


E-MTAB-10995:Sample 20

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 20

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

text: group D

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 20


E-MTAB-10995:Sample 21

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 21

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

characteristic: diet

text: wild type genotype

text: group D

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 21

characteristic: title


E-MTAB-10995:Sample 22

text: public

text: E-MTAB-10995:Sample 22

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

text: wild type genotype

characteristic: genotype

text: group D

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 22


E-MTAB-10995:Sample 23

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 23

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group E

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 23


E-MTAB-10995:Sample 24

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 24

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group E

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 24


E-MTAB-10995:Sample 25

text: public

text: E-MTAB-10995:Sample 25

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: standard diet

characteristic: diet

text: wild type genotype

text: group E

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 25

characteristic: title


E-MTAB-10995:Sample 26

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 26

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

characteristic: genotype

text: group E

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 26


E-MTAB-10995:Sample 27

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 27

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group E

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 27


E-MTAB-10995:Sample 28

text: public

text: E-MTAB-10995:Sample 28

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

text: wild type genotype

text: group F

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 28


E-MTAB-10995:Sample 29

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 29

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

characteristic: diet

text: wild type genotype

text: group F

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 29

characteristic: title


E-MTAB-10995:Sample 30

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 30

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

characteristic: genotype

text: group F

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 30


E-MTAB-10995:Sample 31

text: public

text: E-MTAB-10995:Sample 31

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

text: wild type genotype

text: group F

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 31


E-MTAB-10995:Sample 32

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 32

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

text: group F

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 32


E-MTAB-10995:Sample 33

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 33

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

characteristic: diet

text: wild type genotype

text: group G

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 33

characteristic: title


E-MTAB-10995:Sample 34

text: public

text: E-MTAB-10995:Sample 34

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: standard diet

text: wild type genotype

characteristic: genotype

text: group G

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 34


E-MTAB-10995:Sample 35

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 35

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: standard diet

text: wild type genotype

text: group G

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 35


E-MTAB-10995:Sample 36

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 36

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

text: group H

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 36


E-MTAB-10995:Sample 37

text: public

text: E-MTAB-10995:Sample 37

text: 8 weeks

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: western diet

characteristic: diet

text: wild type genotype

text: group H

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 37

characteristic: title


E-MTAB-10995:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10995:Sample 38

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

characteristic: genotype

text: group H

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: male

text: Sample 38


E-MTAB-10995:Sample 39

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10995:Sample 39

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: house mouse

text: adult

text: western diet

text: wild type genotype

text: group H

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

characteristic: organism part

text: Mus musculus

text: male

text: Sample 39


text: KYUNG HEE UNIVERSITY

text: public

tag: Namespace:KYUNG HEE UNIVERSITY

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

characteristic: common name

text: Dongjin

characteristic: cultivar

text: Protocols: Root hair samples were collected from 3~4 days-old seedlings that germinated on hard MSO agar plates. Collar, Leaf sheath, and Ligule were collected from 5~6 weeks old plants grown at the greenhouse. Lastly, anther wall samples were collected from the paddy field after releasing pollen. Root hair) 3-4days-old seedlings were grown on hard MSO agar plate Collar, Leaf sheath, and Ligule) After two weeks in incubator at BOD incubator, the plants were grown in the greenhouse for a month. Anther wall) Plants were transplanted to paddy field after two weeks in incubator at BOD incubator at end of May. The plants were then grown for 3 months in the field. We extract RNA from the sample using RNeasy Plant Mini Kit from QIAGEN following manufacturer's instruction. TruSeq Stranded mRNA Sample Preparation Guide, Part #15031047 Rev. E with TruSeq Stranded mRNA LT Sample Prep Kit

characteristic: description

text: FL.04 end of flowering stage

characteristic: developmental stage

text: wild type genotype

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: anther wall

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KYUNG HEE UNIVERSITY

characteristic: INSDC center name

text: public

text: 5 to 6

text: ArrayExpress

text: Japanese rice

text: Dongjin

text: sporophyte vegetative stage

text: wild type genotype

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf collar

text: Oryza sativa Japonica Group

characteristic: title


characteristic: ENA-CHECKLIST

text: KYUNG HEE UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 5 to 6

text: ArrayExpress

text: Japanese rice

text: Dongjin

text: sporophyte vegetative stage

text: wild type genotype

characteristic: genotype

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: ligule

text: Oryza sativa Japonica Group


text: KYUNG HEE UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3 to 4

text: ArrayExpress

text: Japanese rice

text: Dongjin

text: 0 seed germination stage

text: wild type genotype

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: root hair

text: Oryza sativa Japonica Group


text: KYUNG HEE UNIVERSITY

text: public

text: 5 to 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

characteristic: common name

text: Dongjin

text: sporophyte vegetative stage

text: wild type genotype

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: leaf sheath

characteristic: organism part

text: Oryza sativa Japonica Group


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanic Gardens Kew

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: barcoding center

text: COPO

text: Maarten Christenhusz

characteristic: collected by

text: Independent

characteristic: collecting institution

characteristic: collection date

text: swollen duckweed

unit: m

characteristic: elevation

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: SURREY | BUSHY PARK

characteristic: geographic location (region and locality)

text: pond

characteristic: habitat

text: Maarten Christenhusz

characteristic: identified by

text: Independent

text: vegetative structure

characteristic: lifestage

text: Lemna japonica

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Lemna japonica

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

characteristic: specimen voucher

text: 545d33cb-9f1d-45b5-88d4-a81e0b893463-DTOL-specimen

characteristic: tolid

type: derived from


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: scientific name

characteristic: subject id

characteristic: title


text: YANGZHOU UNIVERSITY

text: public

tag: Namespace:YANGZHOU UNIVERSITY

characteristic: collection date

text: China

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

text: resequencing project of Listeria monocytogenes

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

text: public

text: China

text: diseased

text: human

text: human

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria momocytogenes isolate


text: YANGZHOU UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: diseased

text: human

text: human

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria momocytogenes isolates


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Male

characteristic: gender

text: Mus musculus

characteristic: organism

text: Mouse

characteristic: phenotype

text: Mus musculus

characteristic: subject id

characteristic: title


E-MTAB-11098:Healthy donor 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11098:Healthy donor 1

tag: Namespace:PhD student, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: human

text: Protocols: Primary dermal fibroblasts (PDGFRα+CD31-CD49f-) isolated from healthy human skin or chronic psoriatic plaques were used for RNA-Seq RNA was extracted from primary fibroblasts using the NucleoSpin RNA kit (Machery Nagel) according to manufacturer’s instructions Libraries were generated from 100ng of high-quality RNA using an Illumina TruSeq RNA Stranded Total RNA kit

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: PDGFRα positive; CD31 negative; CD49f negative

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Healthy donor 1


E-MTAB-11098:Healthy donor 2

characteristic: External Id

text: PhD student, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11098:Healthy donor 2

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

text: fibroblast

text: human

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: abdomen

characteristic: sampling site

text: Homo sapiens

text: female

text: Healthy donor 2


E-MTAB-11098:Healthy donor 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11098:Healthy donor 3

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: human

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: breast

text: Homo sapiens

text: female

text: Healthy donor 3

characteristic: title


E-MTAB-11098:Healthy donor 4

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11098:Healthy donor 4

text: ArrayExpress

text: fibroblast

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: thigh

text: Homo sapiens

text: female

characteristic: sex

text: Healthy donor 4


E-MTAB-11098:Healthy donor 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11098:Healthy donor 5

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: fibroblast

text: human

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: breast

characteristic: sampling site

text: Homo sapiens

text: female

text: Healthy donor 5


E-MTAB-11098:Healthy donor 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11098:Healthy donor 6

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: human

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: breast

text: Homo sapiens

text: female

text: Healthy donor 6

characteristic: title


E-MTAB-11098:Psoriasis patient 1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11098:Psoriasis patient 1

text: ArrayExpress

text: fibroblast

text: psoriasis area and severity index of 10.3

characteristic: clinical information

text: human

text: adult

characteristic: developmental stage

text: psoriasis vulgaris

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: skin of body

characteristic: organism part

text: abdomen

text: Homo sapiens

text: female

characteristic: sex

text: Psoriasis patient 1


E-MTAB-11098:Psoriasis patient 2

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11098:Psoriasis patient 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: fibroblast

text: psoriasis area and severity index of 4.2

text: human

characteristic: common name

text: adult

text: psoriasis vulgaris

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of body

text: abdomen

characteristic: sampling site

text: Homo sapiens

text: female

text: Psoriasis patient 2


E-MTAB-11098:Psoriasis patient 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11098:Psoriasis patient 3

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: psoriasis area and severity index of 1.5

text: human

characteristic: description

text: adult

text: psoriasis vulgaris

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of body

text: foot

text: Homo sapiens

text: female

text: Psoriasis patient 3

characteristic: title


text: unidentified

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: unidentified

text: unidentified

text: unidentified

characteristic: scientific name

characteristic: subject id


text: unidentified

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: unidentified

text: unidentified

text: unidentified


text: E. coli

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: E. coli

characteristic: common name

text: Escherichia coli

text: Escherichia coli


text: Klebsiella pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Patrick Favre

text: public

tag: Namespace:Patrick Favre

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: normal conditions

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

text: 16h/8h light/dark, 22-26�C/16-18�C, 65% relative air humidity, 20-40kLux

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

unit: g

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Control1

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: normal conditions

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Control2

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: normal conditions

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Control3

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: normal conditions

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Control4

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: 4�C for 24 hours

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Cold1

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: 4�C for 24 hours

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Cold3

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: 4�C for 24 hours

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Cold4

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: 4�C for 24 hours

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Cold5

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: No watering for 10 days

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Drought1

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: No watering for 10 days

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Drought2

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: No watering for 10 days

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Drought4

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: warming up 22-42�C for 3 hours, 42�C for 6 hours

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Heat1

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Heat2

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Heat3

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: Plutella xylostella larvae feeding for 30 hours

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Herbivory1

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

text: 65% rel. air humidity

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

text: vegetative shoot system (PO:0025607)

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

text: Biscutella laevigata Herbivory3

characteristic: title

text: weekly


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: subalpine

text: Marc Beringer

text: forest

text: Austria

text: Schneeberg

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

characteristic: organism common name

text: vegetative shoot system (PO:0025607)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: leaf (PO:0025034)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata Herbivory5

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INIBIOMA (CONICET-UNCOMA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INIBIOMA (CONICET-UNCOMA)

characteristic: Submitter Id

characteristic: collection date

text: freshwater

characteristic: environment (biome)

text: freshwater

characteristic: environment (feature)

text: freshwater

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: metagenome

characteristic: organism

text: North-Patagonian lakes

characteristic: project name

text: metagenome

characteristic: scientific name

text: ILLUMINA

characteristic: sequencing method

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad del Pais Vasco

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Universidad del Pais Vasco

text: Water sample from Urdaibai Estuary (st. URD1) 2019-2020 sampling year

characteristic: description

text: estuarine biome

text: estuarine coastal upper water column

text: water

text: Spain

text: mimarks-survey

text: aquatic metagenome

text: Phytoplankton DNA Metabarcoding in the Urdaibai Estuary

text: aquatic metagenome

text: pyrosequencing

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

text: water


text: Universidad del Pais Vasco

text: public

characteristic: Submitter Id

characteristic: collection date

text: Water sample from Urdaibai Estuary (st. URD2) 2019-2020 sampling year

text: estuarine biome

characteristic: environment (biome)

text: estuary

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

characteristic: project name

text: aquatic metagenome

text: pyrosequencing

text: 18S rRNA

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad del Pais Vasco

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Water sample from Urdaibai Estuary (st. URD3) 2019-2020 sampling year

text: estuarine biome

text: estuary

text: water

text: Spain

text: mimarks-survey

text: aquatic metagenome

text: aquatic metagenome

text: pyrosequencing

characteristic: sequencing method

text: 18S rRNA

characteristic: title

text: water

characteristic: water environmental package


text: Universidad del Pais Vasco

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Water sample from Urdaibai Estuary (st. URD4) 2019-2020 sampling year

characteristic: description

text: estuarine biome

characteristic: environment (biome)

text: estuary

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: aquatic metagenome

text: aquatic metagenome

text: pyrosequencing

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad del Pais Vasco

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Water sample from Urdaibai Estuary (st. URD5) 2019-2020 sampling year

text: estuarine biome

text: estuary

text: water

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

characteristic: project name

text: aquatic metagenome

text: pyrosequencing

text: 18S rRNA

text: water


text: Universidad del Pais Vasco

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Water sample from Urdaibai Estuary (st. URD6) 2019-2020 sampling year

characteristic: description

text: estuarine biome

characteristic: environment (biome)

text: estuary

characteristic: environment (feature)

text: water

text: Spain

text: mimarks-survey

text: aquatic metagenome

text: aquatic metagenome

text: pyrosequencing

characteristic: sequencing method

text: 18S rRNA

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad del Pais Vasco

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Extraction control

text: laboratory facility

text: negative control

text: extraction control

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: aquatic metagenome

text: aquatic metagenome

text: pyrosequencing

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

text: water


NTC

text: Universidad del Pais Vasco

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NTC

characteristic: Submitter Id

characteristic: collection date

text: Library control

characteristic: description

text: laboratory facility

text: negative control

text: library control

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: aquatic metagenome

characteristic: organism

characteristic: project name

text: aquatic metagenome

text: pyrosequencing

text: 18S rRNA

text: NTC

text: water


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id

characteristic: title


text: NORWEGIAN UNIVERSITY OF LIFE SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NORWEGIAN UNIVERSITY OF LIFE SCIENCES

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Shoots of the seedlings were harvested in liquid nitrogen after 48 h gamma exposure and stored at -80°C until analyses. Seeds of the Landsberg erecta (Ler) accession of Arabidopsis thaliana (L) Heyhn, were surface sterilized for 3 min with a solution of 10 mL of 70% ethanol and 10 ul Tween 20, followed by five times wash in distilled water. Seeds were given a quick rinse in 96% ethanol before air drying on a sterile filter paper inside a sterile hood. All seeds were evenly sown on 1/2 MS medium (Murashige & Skoog 1962; Duchefa Biochemie, Harleem, Netherland) with 0.8% agar (Plant agar, Sigma-Aldrich) in petri dishes of 5 cm diameter. The seeds were then germinated for 6 days at 20°C under a photon flux density of 30 μmol m-2 s-1 at 400-700 nm (TL-D 58W/840 lamps, Phillips) in a 16 h photoperiod. Six days old seedlings were exposed to gamma radiation for 48h at gamma dose rates 1, 10, 40, 100, or 290 mGy/h, using the FIGARO low dose gamma irradiation facility (60Co; 1173.2 and 1332.5 keV γ-rays) at Norwegian University of Life Sciences (Hansen et al. 2019). During the gamma irradiation, the room temperature was set at 20˚C±1°C with a 12 h photoperiod with a photon flux density of 55 μmol m-2 s-1 provided by high pressure metal halide lamps (HPI-T Plus 250W lamps, Phillips). Control samples not exposed to gamma radiation were positioned outside the radiation sector, shielded by lead walls, in the same room and under same light and temperature conditions. Total RNA was extracted using the Masterpure Plant RNA Purification Kit (Epicenter, Madison, WI, USA) following the manufacturer`s instructions except that 0.5 % polyvinylpyrrolidone (PVP), mw 360 000, Sigma Aldrich, Steinheim, Germany) was added to the extraction buffer and that 3 µl beta-mercaptoethanol per sample replaced the 1,4-dithiothreitol (DTT) in the manufacturer`s protocol. RNA quality was assessed using an Agilent 2100 Bioanalyzer with an RNA 144000 NanoKit (Agilent technologies, Palo Alto, CA, USA) and the quantity of isolated RNA was measured by a NanoDrop ND-1000 Spectrophotometer (Thermo Scientific, Wilmington, DE, USA). Strand-specific 20xTruseqTM RNA library preparation kit.

text: seedling development stage

characteristic: developmental stage

text: Landsberg erecta

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Patrick Favre

text: public

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: normal conditions

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

characteristic: organism common name

text: whole plant flowering stage (PO:0007016)

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: bud (PO:0000055)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata bud

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: normal conditions

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

text: soil

text: hermaphrodite

text: leaf (PO:0025034)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

text: Biscutella laevigata leaf

characteristic: title

text: weekly


Meri

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Meri

text: subalpine

text: Marc Beringer

text: normal conditions

text: forest

text: Austria

text: Schneeberg

text: glasshouse

text: 65% rel. air humidity

characteristic: isolation and growth condition

characteristic: light regimen

text: Biscutella laevigata subsp. austriaca

characteristic: organism

text: Buckler mustard

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: hermaphrodite

characteristic: plant sex

text: meristem (PO:0030009)

characteristic: plant structure

text: diploid

characteristic: ploidy

text: clonal

characteristic: propagation

text: healthy

characteristic: sample health state

text: Bern Switzerland

characteristic: sample storage location

characteristic: sample volume or weight for DNA extraction

text: Biscutella laevigata subsp. austriaca

characteristic: scientific name

text: subspecies austriaca

characteristic: subspecific genetic lineage rank

text: Biscutella laevigata meristem

text: weekly

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Patrick Favre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: air temperature regimen

text: subalpine

characteristic: climate environment

text: Marc Beringer

characteristic: collected by

characteristic: collection date

text: normal conditions

characteristic: description

text: forest

characteristic: environment (biome)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Schneeberg

characteristic: geographic location (region and locality)

text: glasshouse

characteristic: growth facility

text: 65% rel. air humidity

characteristic: humidity regimen

text: Biscutella laevigata subsp. austriaca

text: Buckler mustard

text: soil

text: hermaphrodite

text: flower (PO:0004541)

text: diploid

text: clonal

text: healthy

text: Bern Switzerland

text: Biscutella laevigata subsp. austriaca

text: subspecies austriaca

text: Biscutella laevigata flower

characteristic: title

text: weekly