characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: B cell

text: human

characteristic: description

text: adult

text: prostate cancer

text: gleason score 6

text: CD19 positive

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: prostate specific antigen score 8.6

text: Homo sapiens

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Laboratory of Molecular Infection Medicine Sweden (MIMS), Department of molecular biology, Umea university

text: ArrayExpress

characteristic: broker name

text: B cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: CD19+ B cells from tumor-draining lymph nodes (S), non-draining lymph nodes (N), and peripheral blood (P) were positively isolated using a Dynabeads Pan B cell kit (Thermo scientific # 11143D). Isolated B cells were washed and counted. Nucleospin XS kit (Macherey-Nagel # 740902.50) was used for total RNA isolation according to the manufacturer’s instructions. 1 - 10 ng of total RNA was used for the generation of IgM/IgG heavy and light chain libraries of V(D)J variable regions of BCR transcripts employing the SMARTer Human BCR IgG IgM H/K/L Profiling Kit (Takara Bio, #634466).

text: adult

characteristic: developmental stage

text: prostate cancer

characteristic: disease

characteristic: disease staging

text: gleason score 6

characteristic: gleason score

text: CD19 positive

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lymph node

characteristic: organism part

text: prostate specific antigen score 8.6

characteristic: prostate specific antigen score

text: tumor draining

characteristic: sampling site

text: Homo sapiens


E-MTAB-11861:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COLUMBIA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11861:Sample 1

tag: Namespace:COLUMBIA UNIVERSITY

characteristic: Submitter Id

text: 9 to 10

unit: week

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: The skin at the nape of the neck was incised with fine dissecting scissors, and the incision rotated around the entire neck. This skin was then dissected anteriorly and completely removed, exposing the bone over the entire skull and nose. The skull was then sectioned in the coronal plane posterior to the eyes. The remnant of the brain was completely removed, leaving the anterior aspect of the skull base exposed. The most anterior point of the skull base on either side is directly posterior to the mouse nasal cavities. The remaining portion of the skull was removed to the posterior aspect of the nasal cavity. A scissor was inserted into the posterior aspect of the nasal cavity, and the suture line was incised separating one side of the septum (medially) from the maxilla (laterally). The scissor was then turned inferiorly to section the palate, and thus completely separated the septum from the lateral nasal wall. The procedure was then repeated on the other side. The remaining attachment at the nasal tip was severed and the septum completely removed. Total RNA was extracted with miRNeasy micro kit (Qiagen, 217084) according to the manufacturer’s instructions. ERCC RNA Spike-In Mix kit (ThermoFisher Scientific, 4456740) was added to normalized total RNA prior to library preparation following manufacturer’s protocol. The RNA sequencing libraries were prepared using the NEBNext Ultra II RNA Library Prep Kit for Illumina according to manufacturer’s instructions (New England Biolabs, Ipswich, MA, USA).

characteristic: description

text: adult

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: turbinate bone

text: Mus musculus

characteristic: scientific name

text: female

characteristic: sex

text: BALB/c

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-11861:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: COLUMBIA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11861:Sample 2

text: 9 to 10

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: turbinate bone

characteristic: organism part

text: Mus musculus

text: female

text: BALB/c

text: Sample 2


E-MTAB-11861:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COLUMBIA UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11861:Sample 3

characteristic: Submitter Id

text: 9 to 10

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: turbinate bone

text: Mus musculus

text: female

text: BALB/c

text: Sample 3


E-MTAB-11861:Sample 4

text: COLUMBIA UNIVERSITY

text: public

text: E-MTAB-11861:Sample 4

text: 9 to 10

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: turbinate bone

text: Mus musculus

characteristic: scientific name

text: female

characteristic: sex

text: BALB/c

text: Sample 4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-24-06-2022-04:29:58:976-24518

tag: Namespace:Okinawa Institute of Science and Technology

text: thale cress

text: Illumina RNA sequencing of epigenetics mutants of Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Okinawa Institute of Science and Technology

text: public

text: ena-SAMPLE-TAB-24-06-2022-04:40:34:379-31233

text: thale cress

characteristic: common name

text: Sequencing of epigenetics mutants

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: External Id

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-24-06-2022-04:46:22:654-24520

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-06-2022-04:46:50:091-24522

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-24-06-2022-04:47:48:444-24524

characteristic: Submitter Id

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-24-06-2022-04:48:12:349-24526

text: thale cress

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-24-06-2022-04:48:57:387-24528

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-24-06-2022-04:49:11:665-24530

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-24-06-2022-04:49:45:156-31235

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-24-06-2022-04:49:59:794-24532

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:23:10:744-38661

text: thale cress

text: ChiP-Seq of epigenetics mutants of Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:24:04:998-28476

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:24:30:880-38663

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:24:47:935-28478

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:25:17:323-38665

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:25:34:429-28480

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Okinawa Institute of Science and Technology

text: public

text: ena-SAMPLE-TAB-26-06-2022-02:25:49:505-38667

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:26:03:757-28482

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:27:22:516-28484

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:27:40:219-38669

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:27:54:489-28486

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:28:22:263-28488

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:28:36:789-38671

text: thale cress

text: ChiP-Seq of Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:28:49:931-38673

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:30:11:943-38675

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:30:30:998-28490

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:31:07:014-28492

text: thale cress

text: ChiP-Seq of epigenetics mutants of Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:31:39:603-28494

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:32:02:715-38677

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-26-06-2022-02:32:15:145-28496

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:18:36:526-39655

text: thale cress

text: ONT-DRS of Arabidopsis thaliana Col-0 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Okinawa Institute of Science and Technology

text: public

text: ena-SAMPLE-TAB-27-06-2022-07:19:02:806-30014

text: thale cress

text: ONT-DRS of Arabidopsis thaliana Col-0 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:20:02:604-30016

text: thale cress

text: ONT-DRS of Arabidopsis thaliana met1 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:21:01:689-39659

text: thale cress

text: ONT-DRS of Arabidopsis thaliana met1 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:21:21:506-30018

text: thale cress

text: ONT-DRS of Arabidopsis thaliana met1 sample 3

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:21:52:311-39661

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ddm1 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:22:11:926-30020

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ddm1 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:22:29:146-30022

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ddm1 sample 3

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:23:17:845-39663

text: thale cress

text: ONT-DRS of Arabidopsis thaliana suvh456 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Okinawa Institute of Science and Technology

text: public

text: ena-SAMPLE-TAB-27-06-2022-07:23:41:609-30024

text: thale cress

text: ONT-DRS of Arabidopsis thaliana suvh456 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:24:04:089-39665

text: thale cress

text: ONT-DRS of Arabidopsis thaliana suvh456 sample 3

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:36:00:081-39667

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ibm1 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:36:21:408-30026

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ibm1 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:36:40:511-30028

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ibm1 sample 3

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:37:16:371-30030

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ibm2 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:37:35:135-39669

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ibm2 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:37:55:836-30032

text: thale cress

text: ONT-DRS of Arabidopsis thaliana ibm2 sample 3

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Okinawa Institute of Science and Technology

text: public

text: ena-SAMPLE-TAB-27-06-2022-07:38:45:709-30034

text: thale cress

text: ONT-DRS of Arabidopsis thaliana edm2 sample 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:39:07:293-30036

text: thale cress

text: ONT-DRS of Arabidopsis thaliana edm2 sample 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:39:29:692-30038

text: thale cress

text: ONT-DRS of Arabidopsis thaliana edm2 sample 3

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:43:59:769-39671

text: thale cress

text: ONT Genome-wide sequencing of Arabidopsis thaliana Col-0

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:44:25:766-39673

text: thale cress

text: ONT Genome-wide sequencing of Arabidopsis thaliana met1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

text: ena-SAMPLE-TAB-27-06-2022-07:44:46:232-30041

text: thale cress

text: ONT Genome-wide sequencing of Arabidopsis thaliana ddm1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


name: Haloferax gibbonsii LR2-5 HFTV1 escape mutant omega15

text: public

tag: Namespace:Groningen Institute for Evolutionary Life Sciences, University of Groningen

text: Haloferax gibbonsii escape mutant with 15bp insertion in the S-layer glycopeptide, resistant to infections by haloarchaeal virus HFTV1

text: Haloferax gibbonsii

text: Haloferax gibbonsii

characteristic: strain

characteristic: sub strain


name: Haloferax gibbonsii LR2-5 HFTV1 escape mutant omega48

text: Groningen Institute for Evolutionary Life Sciences, University of Groningen

text: public

text: Haloferax gibbonsii escape mutant with 48bp insertion in the S-layer glycopeptide, resistant to infections by haloarchaeal virus HFTV1

text: Haloferax gibbonsii

characteristic: organism

text: Haloferax gibbonsii

characteristic: scientific name


name: Haloferax gibbonsii LR2-5 HFTV1 escape mutant delta16k

characteristic: ENA-CHECKLIST

text: public

text: Haloferax gibbonsii escape mutant with 16kbp deletion affecting more than 90% of the S-layer glycopeptide, resistant to infections by haloarchaeal virus HFTV1

text: Haloferax gibbonsii

text: Haloferax gibbonsii


characteristic: ENA-FIRST-PUBLIC

text: TEAGASC FOOD RESEARCH CENTRE

text: public

tag: Namespace:TEAGASC FOOD RESEARCH CENTRE

characteristic: collection date

text: Dietary induced bacterial metabolites reduce inflammation and inflammation-associated cancer via Vitamin D pathway

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: gut metagenome

text: metabolites reduce inflammation

characteristic: project name

text: gut metagenome

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UTRECHT UNIVERSITY

characteristic: Submitter Id

text: Illumina Sequencing of 21S00178-1

characteristic: description

text: Netherlands

text: canine

characteristic: isolation source

text: Staphylococcus coagulans

text: Staphylococcus coagulans

text: Illumina Sequencing of 21S00178-1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UTRECHT UNIVERSITY

text: public

characteristic: collection date

text: Illumina Sequencing of 21S00179-1

text: Netherlands

characteristic: geographic location (country and/or sea)

text: canine

text: Staphylococcus coagulans

characteristic: organism

text: Staphylococcus coagulans

characteristic: scientific name

text: Illumina Sequencing of 21S00179-1


characteristic: ENA-LAST-UPDATE

text: UTRECHT UNIVERSITY

text: public

text: Illumina Sequencing of 21S00180-1

text: Netherlands

text: canine

text: Staphylococcus coagulans

text: Staphylococcus coagulans

text: Illumina Sequencing of 21S00180-1


characteristic: External Id

text: UTRECHT UNIVERSITY

text: public

text: Illumina Sequencing of 21S00181-1

text: Netherlands

text: canine

text: Staphylococcus coagulans

text: Staphylococcus coagulans

text: Illumina Sequencing of 21S00181-1


text: UTRECHT UNIVERSITY

characteristic: INSDC center name

text: public

text: Illumina Sequencing of 21S00182-1

text: Netherlands

text: canine

text: Staphylococcus coagulans

text: Staphylococcus coagulans

text: Illumina Sequencing of 21S00182-1


text: UTRECHT UNIVERSITY

characteristic: INSDC first public

text: public

text: Illumina Sequencing of 21S00183-1

text: Netherlands

text: canine

text: Staphylococcus coagulans

text: Staphylococcus coagulans

text: Illumina Sequencing of 21S00183-1


text: UTRECHT UNIVERSITY

characteristic: INSDC last update

text: public

text: Illumina Sequencing of 21S00184-1

text: Netherlands

text: canine

text: Staphylococcus coagulans

text: Staphylococcus coagulans

text: Illumina Sequencing of 21S00184-1


text: UGent

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: SHEP

characteristic: cell line

text: neuroblast (sensu Vertebrata)

characteristic: cell type

text: human

characteristic: common name

text: Protocols: 50,000 cells were harvested and spin down for 5 min at 800g. Cells were grown in RPMI1640 medium supplemented with 10% foetal bovine serum, 2 mM L-Glutamine and 100 IU/ml penicillin/streptavidin at 37°C in a 5% CO2 humid atmosphere, supplemented with 10% tetracyclin-free FBS to avoid leakage. For SOX11 inducible overexpression, the OriGene vector SC303275 containing the cDNA of SOX11 was amplified by PCR and the obtained fragment was gel purified and ligated into the opened NdeI site of response vector pLVX-TRE2G-Zsgreen1 (Takara, cat#631353) producing pLVX-TRE3G-Zsgreen1-IRES-hSOX11. The constructed plasmid was verified by restriction digest and sequenced by Sanger DNA sequencing (GATC). Lenti-X 293T Cells (Takara, cat#632180) were transfected with the regulator vector pLVX-pEF1a-Tet3G (cat#631353 and Lenti-X Packaging Single Shots (VSV-G) (cat#631275) according to the manufacturer’s instructions. The supernatant containing the lenti-virus was collected, filtered through a 0.45 µm filter and concentrated using PEG-IT. SH-EP cells were infected with the concentrated virus and 48 hours of incubation thereafter, the transduced cells were selected using 500 µg/ml G418. Individual clones were obtained by limiting dilution. After clonal expansion, the TET protein expression in each clone was checked by immunoblotting using TetR monoclonal antibody (Clone 9G9) (Clontech, cat#631131). In addition, induction of each expressing clone was tested after transduction with the pLVX-TRE3G-Luc control vector. Selected clones were transduced with lentivirus produced as described above from vector pLVX-TRE3G-Zsgreen1-IRES-hSOX11 and subsequently selected with 1 µg/ml puromycin. Each clone was treated with 1 ug/ml Doxycycline for induction of SOX11 expression or left unaffected in case of the control. ATAC-seq was performed as previously described with minor changes (Buenrostro et al. 2015). 50,000 cells were lysed and fragmented using digitonin and Tn5 transposase (Nextera DNA Library Prep Kit, cat#FC-121-1030)). Samples were purified using the DNA clean & concentrator kit from Zymo (cat#D4013). The transposased DNA fragments were amplified using the KAPA HiFi HotStart Readymix (cat#07 958 927 001) and purified using Agencourt AMPure XP beads (Beckmamn Coulter, cat#A63881). Library concentrations were measured with the Illumina Kapa Library quantification kit (Lightcycler 480 qPCR mix cat#KK4854)

text: neuroblastoma

characteristic: disease

text: doxycycline-inducible SOX11 expression clone C11

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: SOX11 overexpression

characteristic: phenotype

text: Homo sapiens

text: doxycycline; 1 microgram per milliliter

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UGent

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: SHEP

text: neuroblast (sensu Vertebrata)

text: human

characteristic: description

text: neuroblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: wild type

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UGent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: SHEP

text: neuroblast (sensu Vertebrata)

text: human

text: neuroblastoma

text: doxycycline-inducible SOX11 expression clone G2

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: SOX11 overexpression

text: Homo sapiens

text: doxycycline; 1 microgram per milliliter


text: UGent

text: public

text: ArrayExpress

characteristic: broker name

text: SHEP

characteristic: cell line

text: neuroblast (sensu Vertebrata)

characteristic: cell type

text: human

characteristic: common name

text: neuroblastoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: wild type

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CECAD Research Center

text: public

characteristic: SRA accession

tag: Namespace:CECAD Research Center

text: house mouse

text: Rb1FL/FL, p53FL/FL, NemoFL/FL

text: Mus musculus

text: Mus musculus

characteristic: scientific name


text: CECAD Research Center

text: public

characteristic: Submitter Id

text: house mouse

text: Rb1FL/FL, p53FL/FL, TNFR1FL/FL

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CECAD Research Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Rb1FL/FL, p53FL/FL

text: Mus musculus

text: Mus musculus


text: CECAD Research Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Rb1FL/FL, p53FL/FL, TNFR1-/-

text: Mus musculus

text: Mus musculus


text: CECAD Research Center

text: public

text: house mouse

characteristic: common name

text: Rb1FL/FL, p53FL/FL, p65FL/FL

text: Mus musculus

text: Mus musculus


text: CECAD Research Center

text: public

text: house mouse

text: Rb1FL/FL, p53FL/FL, R26.LSL.IKK2ca

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:University of Cologne, CECAD Research Center

text: house mouse

text: Rb1FL/FL, p53FL/FL, R26IKK2ca

text: Mus musculus

text: Mus musculus


text: Streptococcus agalactiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: subject id


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MURCIA

text: public

tag: Namespace:UNIVERSITY OF MURCIA

characteristic: collection date

text: snapdragon

text: petals at anthesis

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber 22¼day 15¼ night

characteristic: isolation and growth condition

text: Antirrhinum majus

text: Anthesis day 0

characteristic: plant developmental stage

text: Potting substrate

characteristic: plant growth medium

text: Petals

characteristic: plant structure

text: Antirrhinum majus

text: Control 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MURCIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: snapdragon

text: petals at anthesis

characteristic: description

text: Spain

text: Growth chamber 22¼day 15¼ night

text: Antirrhinum majus

characteristic: organism

text: Anthesis day 0

text: Potting substrate

text: Petals

text: Antirrhinum majus

characteristic: scientific name

text: Control 2

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MURCIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: snapdragon

characteristic: common name

text: petal three days after anthesis

text: Spain

text: Growth chamber 22¼day 15¼ night

text: Antirrhinum majus

text: Anthesis + 3 days

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Control 3


text: UNIVERSITY OF MURCIA

text: public

text: snapdragon

text: petal three days after anthesis

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber 22¼day 15¼ night

characteristic: isolation and growth condition

text: Antirrhinum majus

text: Anthesis + 3 days

characteristic: plant developmental stage

text: Potting substrate

characteristic: plant growth medium

text: Petals

characteristic: plant structure

text: Antirrhinum majus

text: Control 4


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MURCIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: snapdragon

text: petal three days after anthesis

characteristic: description

text: Spain

text: Growth chamber 22¼day 15¼ night

text: Antirrhinum majus

characteristic: organism

text: Anthesis + 3 days

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Control 5


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MURCIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: snapdragon

text: petals at anthesis

text: Spain

text: Growth chamber 15¼Cday 5¼ Cnight

text: Antirrhinum majus

text: Anthesis day 0

text: Potting substrate

text: Petals

text: Antirrhinum majus

characteristic: scientific name

text: Cold 1

characteristic: title


text: UNIVERSITY OF MURCIA

text: public

characteristic: collection date

text: snapdragon

characteristic: common name

text: petals at anthesis

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber 15¼Cday 5¼ Cnight

characteristic: isolation and growth condition

text: Antirrhinum majus

text: Anthesis day 0

characteristic: plant developmental stage

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Cold 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MURCIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: snapdragon

text: petal three days after anthesis

text: Spain

text: Growth chamber 15¼Cday 5¼ Cnight

text: Antirrhinum majus

text: Anthesis + 3 days

text: Potting substrate

characteristic: plant growth medium

text: Petals

characteristic: plant structure

text: Antirrhinum majus

text: Cold 3


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MURCIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: snapdragon

text: petal three days after anthesis

characteristic: description

text: Spain

text: Growth chamber 15¼Cday 5¼ Cnight

text: Antirrhinum majus

characteristic: organism

text: Anthesis + 3 days

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Cold 4


text: UNIVERSITY OF MURCIA

text: public

characteristic: collection date

text: snapdragon

characteristic: common name

text: petal three days after anthesis

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber 15¼Cday 5¼ Cnight

text: Antirrhinum majus

text: Anthesis + 3 days

text: Potting substrate

text: Petals

text: Antirrhinum majus

characteristic: scientific name

text: Cold 5

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MURCIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: snapdragon

text: petals at anthesis

text: Spain

text: Growth chamber 30¼Cday 23¼ Cnight

characteristic: isolation and growth condition

text: Antirrhinum majus

text: Anthesis day 0

characteristic: plant developmental stage

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Heat 1


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MURCIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: snapdragon

text: petal three days after anthesis

text: Spain

text: Growth chamber 30¼Cday 23¼ Cnight

text: Antirrhinum majus

text: Anthesis + 3 days

text: Potting substrate

characteristic: plant growth medium

text: Petals

characteristic: plant structure

text: Antirrhinum majus

text: Heat 2


text: UNIVERSITY OF MURCIA

text: public

characteristic: collection date

text: snapdragon

characteristic: common name

text: petal three days after anthesis

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Growth chamber 30¼Cday 23¼ Cnight

text: Antirrhinum majus

characteristic: organism

text: Anthesis + 3 days

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Heat 3


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MURCIA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: snapdragon

text: petal three days after anthesis

text: Spain

text: Growth chamber 30¼Cday 23¼ Cnight

text: Antirrhinum majus

text: Anthesis + 3 days

text: Potting substrate

text: Petals

text: Antirrhinum majus

characteristic: scientific name

text: Heat 4

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MURCIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: snapdragon

text: petal three days after anthesis

text: Spain

text: Growth chamber 30¼Cday 23¼ Cnight

characteristic: isolation and growth condition

text: Antirrhinum majus

text: Anthesis + 3 days

characteristic: plant developmental stage

text: Potting substrate

text: Petals

text: Antirrhinum majus

text: Heat 5


text: IDIBELL

text: public

characteristic: collection date

text: Bloodstream

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Bloodstream

characteristic: isolation source

text: 41�20'39.8N 2�06'15.5E

characteristic: lat lon

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

tag: Namespace:ISRAEL OCEANOGRAPHIC AND LIMNOLOGICAL RESEARCH

characteristic: Submitter Id

text: Diazotrophic community of a Gloeotrichia colony

text: freshwater lake

characteristic: environment (biome)

text: freshwater littoral zone

characteristic: environment (feature)

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: uncultured prokaryote

characteristic: organism

text: A first documentation of Gloeotrichia pisum in Lake Kinneret: identification and characterization of a successful epiphytic colonial cyanobacterium

characteristic: project name

text: uncultured prokaryote

text: Illumina

characteristic: sequencing method

text: nifH

characteristic: target gene

text: Gloeotrichia colony diazotrophic community site LK13

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ISRAEL OCEANOGRAPHIC AND LIMNOLOGICAL RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: description

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

characteristic: geographic location (country and/or sea)

text: 1 m

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: nifH

text: Gloeotrichia colony diazotrophic community site LK12

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake

characteristic: environment (biome)

text: freshwater littoral zone

characteristic: environment (feature)

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: nifH

text: Gloeotrichia colony diazotrophic community site LK11b

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: investigation type

text: uncultured prokaryote

characteristic: organism

characteristic: project name

text: uncultured prokaryote

text: Illumina

characteristic: sequencing method

text: nifH

characteristic: target gene

text: Gloeotrichia colony diazotrophic community site LK11a

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: description

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

characteristic: geographic location (country and/or sea)

text: 1 m

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: nifH

text: Gloeotrichia colony diazotrophic community site LK23

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: freshwater lake

characteristic: environment (biome)

text: freshwater littoral zone

characteristic: environment (feature)

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: 16S rRNA

characteristic: target subfragment

text: Gloeotrichia colony prokaryotic community site LK13

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: investigation type

text: uncultured prokaryote

characteristic: organism

characteristic: project name

text: uncultured prokaryote

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Gloeotrichia colony prokaryotic community site LK12

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

characteristic: geographic location (country and/or sea)

text: 1 m

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: 16S rRNA

text: Gloeotrichia colony prokaryotic community site LK11b

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: freshwater lake

characteristic: environment (biome)

text: freshwater littoral zone

characteristic: environment (feature)

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: 16S rRNA

characteristic: target subfragment

text: Gloeotrichia colony prokaryotic community site LK11a

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

text: 1 m

text: uncultured prokaryote

characteristic: organism

characteristic: project name

text: uncultured prokaryote

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Gloeotrichia colony prokaryotic community site LK23

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Eukaryotic community of a Gloeotrichia colony

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

characteristic: geographic location (country and/or sea)

text: 1 m

text: eukayote

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: 18S rRNA

text: Gloeotrichia colony eukaryotic community site LK13

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: freshwater lake

text: freshwater littoral zone

characteristic: environment (feature)

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukayote

characteristic: investigation type

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: 18S rRNA

characteristic: target subfragment

text: Gloeotrichia colony eukaryotic community site LK12

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: freshwater lake

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

text: 1 m

text: eukayote

text: uncultured prokaryote

characteristic: organism

characteristic: project name

text: uncultured prokaryote

text: Illumina

characteristic: sequencing method

text: 18S rRNA

characteristic: target gene

text: Gloeotrichia colony eukaryotic community site LK11b

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: freshwater lake

characteristic: environment (biome)

text: freshwater littoral zone

text: algal material ERC000024

text: Israel

characteristic: geographic location (country and/or sea)

text: 1 m

text: eukayote

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina

text: 18S rRNA

text: Gloeotrichia colony eukaryotic community site LK11a

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: freshwater lake

text: freshwater littoral zone

characteristic: environment (feature)

text: algal material ERC000024

text: Israel

text: 1 m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukayote

characteristic: investigation type

text: uncultured prokaryote

text: A first documentation of Gloeotrichia pisum in Lake Kinneret: identification and characterization of a successful epiphytic colonial cyanobacterium

text: uncultured prokaryote

text: Illumina

text: 18S rRNA

characteristic: target subfragment

text: Gloeotrichia colony eukaryotic community site LK23

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Philipps University Marburg, Bioinformatics Core Facility, Center for Tumor- and Immune Biology,

text: ArrayExpress

characteristic: broker name

text: GI-ME-N

characteristic: cell line

text: human

characteristic: common name

text: Protocols: SH-SY5Ycells from ATCC. Gimen from DSMZ. For sequencing: Triplicates were pooled in equal amounts into one sample. All cell lines were cultured in Dulbecco’s Modified Eagle Medium (DMEM (high Glucose plus Glutamine and Pyruvate), Invitrogen) supplemented with 10% fetal bovine serum (FBS) and 1% Penicillin/ Streptomycin at 37°C with 5% CO2. Day0.5: Change to 0.5%FBS +DMSO or ISX (20µM)Day2.5 Harvest Macherey-Nagel NucleoSpin RNA Isolation Kit, RNA Isolation according to manufactures protocol. Dnase Treatment according to manufacture's protocol. Illumina TruSeq total RNA v2

text: juvenile stage

characteristic: developmental stage

text: neuroblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Philipps University Marburg, Bioinformatics Core Facility, Center for Tumor- and Immune Biology,

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: GI-ME-N

text: human

characteristic: description

text: juvenile stage

text: neuroblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: juvenile stage

text: neuroblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


text: CIIMAR

text: public

text: CNAG

characteristic: barcoding center

text: CNAG-CRG

characteristic: broker name

text: Joaquim Garrabou

characteristic: collected by

text: ICM_Institut de Ci�ncies del Mar

characteristic: collecting institution

characteristic: collection date

text: Red coral

characteristic: common name

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cap Castel, Illes Medes, Catalunya, Spain

characteristic: geographic location (region and locality)

text: rocky overhang

characteristic: habitat

text: Joaquim Garrabou

characteristic: identified by

text: ICM_Institut de Ci�ncies del Mar

text: adult

characteristic: lifestage

text: Corallium rubrum

characteristic: original collection date

text: CBP

characteristic: project name

text: Corallium rubrum

characteristic: sex

characteristic: specimen id

text: Corallium rubrum DNA sample

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:PhD student

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bread wheat

text: Graham

characteristic: cultivar

text: Protocols: The whole root system and the basal node of wheat plants were harvested at different time points depending on the experimental design. Samples were quickly frozen in liquid nitrogen and stored at -80 oC until processing. In this study, the basal node is called the 0.5 cm long section from the base of the main shoot, which includes the shoot apical meristem, lateral buds and leaf meristems. After removing all the roots from the shoot, the outgrown primary tillers were also carefully removed, and 0.5 cm of the main shoot base was dissected. Tissue samples from 3 plants were pooled per biological replicate. Plants were grown hydroponically on top of 5 L black pots containing the nutrient solution under constant aeration. The biostimulant used was a microalgae extract based product specifically formulated for the hydroponic culture, which was added in the nutrient solution. Plants grown in the same pot (3 plants per pot) were considered pseudoreplicates, and they were pooled together to form a biological replicate. The experiment was conducted in a standard glasshouse equipped with high-pressure sodium lights (14 h day length, 20/18 oC day and night temperature, respectively). Total RNA was extracted from approximately 100 mg of frozen tissue using TRIzol reagent (Invitrogen) following the manufacturer's protocol. To ensure no DNA carryover, DNase treatment was performed using RQ1 RNase-Free DNase (Promega). After DNase treatment RNA was further purified by phenol/chloroform/isoamyl-alcohol purification. Extracted total RNA from basal node samples was further purified with Plant RNeasy kit (Qiagen) following the provided RNA clean-up protocol. A modified hot phenol extraction protocol was used for extracting RNA from approximately 500 mg of root tissue (Verwoerd et al., 1989). DNase treatment and further phenol/chloroform/isoamyl-alcohol RNA purification steps were performed as described above. Quality control, poly-A selection for rRNA removal, library preparation, multiplexing were performed by Azenta/Genewiz UK according to their standard workflow. Briefly, RNA library preparation was prepared using NEBNext Ultra II Library Prep Kit for Illumina following the manufacturer's protocol (NEB). Firstly, oligo-dt beads were used for mRNA enrichment, and the mRNAs were fragmented for 15 min at 94 oC. First and second strand cDNA were subsequently synthesized. Indexed adapters were ligated to cDNA fragments after adenylation of the 3' end of the cDNA fragments. Limited cycle PCR was used for library amplification. Sequencing libraries were validated using NGS Kit on the Agilent 5300 Fragment Analyzer (Agilent Technologies) and quantified by using Qubit 4.0 Fluorometer (Invitrogen) or equivalent.

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: high nitrogen

characteristic: growth condition

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: basal node

characteristic: organism part

text: Triticum aestivum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student

text: public

text: ArrayExpress

text: bread wheat

characteristic: common name

text: Graham

text: leaf production stage

text: wild type genotype

text: high nitrogen

text: Triticum aestivum

text: Triticum aestivum

text: root

text: Triticum aestivum


text: PhD student

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: bread wheat

text: Graham

text: leaf production stage

text: wild type genotype

text: low nitrogen

text: Triticum aestivum

text: Triticum aestivum

text: basal node

text: Triticum aestivum


text: PhD student

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bread wheat

text: Graham

characteristic: cultivar

characteristic: description

text: leaf production stage

text: wild type genotype

text: low nitrogen

text: Triticum aestivum

text: Triticum aestivum

text: root

text: Triticum aestivum


text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:06:59:926-117798

tag: Namespace:Real Jardin Botanico (RJB-CSIC)

text: marine sediment

text: seawater metagenome

characteristic: organism

text: seawater metagenome


text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126203

text: marine sediment

text: seawater metagenome

text: seawater metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126204

text: marine sediment

text: seawater metagenome

text: seawater metagenome


characteristic: ENA-FIRST-PUBLIC

text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126205

text: marine sediment

text: seawater metagenome

text: seawater metagenome


characteristic: ENA-LAST-UPDATE

text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126206

text: marine sediment

text: seawater metagenome

text: seawater metagenome


characteristic: External Id

text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126207

text: marine sediment

text: lake water metagenome

text: lake water metagenome


text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126208

text: marine sediment

text: lake water metagenome

text: lake water metagenome


text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126209

text: marine sediment

text: lake water metagenome

text: lake water metagenome


text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126210

text: marine sediment

text: lake water metagenome

text: lake water metagenome


text: Real Jardin Botanico (RJB-CSIC)

text: public

text: ena-SAMPLE-TAB-10-07-2022-19:10:13:264-126211

text: marine sediment

text: lake water metagenome

text: lake water metagenome


E-MTAB-11936:Sample 1

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 1

tag: Namespace:Garvan Institute of Medical Research

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human melanoma cell lines CHL-1 (WT), MEL224 (NRAS Q61R ) and A375 (BRAF V600E ) were transfected with expression vectors for GLI1, GLI2 or GLI3 proteins in two independent experiments. Non-transfected lines were used as controls. Briefly, 200 000 cells were seeded in a Ø10 cm cell culture dish and transfected the next day with 5 g of plasmid DNA, using the X-fect reagent (Clontech) and following the manufacturer’s instructions. 48 hours post transfection, total RNA was isolated with Agilent Absolutely RNA miRNA Kit. The quality of the isolated RNA was checked on agarose gel, and concentrations of RNA were measured on NanoPhotometer N60 instrument (Implen, Munich, Germany). Sequencing libraries were generated and sequenced by DNA Link Company. The integrity of RNA samples was checked on Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). The instrument provided data on RNA concentration, electropherogram, rRNA subunit ratios and RNA integrity number (RIN). All samples had RIN ≥ 8.0 and a 28S:18S ratio ≥ 1.4. Total amount of 1 ug of RNA was used. cDNA libraries were prepared using TruSeq mRNA library Kit.

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-11936:Sample 2

text: Garvan Institute of Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11936:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: melanoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 2


E-MTAB-11936:Sample 3

characteristic: ENA-CHECKLIST

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 3

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: adult

text: melanoma

text: GLI1 overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-11936:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 4

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: adult

text: melanoma

text: GLI1 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 4


E-MTAB-11936:Sample 5

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: GLI2 overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 5


E-MTAB-11936:Sample 6

text: Garvan Institute of Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11936:Sample 6

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI2 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 6


E-MTAB-11936:Sample 7

characteristic: ENA-CHECKLIST

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: adult

text: melanoma

text: GLI3 overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 7


E-MTAB-11936:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 8

text: ArrayExpress

characteristic: cell line

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI3 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 8

characteristic: title


E-MTAB-11936:Sample 9

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 9

text: ArrayExpress

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 9


E-MTAB-11936:Sample 10

text: Garvan Institute of Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11936:Sample 10

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: melanoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 10


E-MTAB-11936:Sample 11

characteristic: ENA-CHECKLIST

text: Garvan Institute of Medical Research

text: public

characteristic: SRA accession

text: E-MTAB-11936:Sample 11

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: adult

text: melanoma

text: GLI1 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 11


E-MTAB-11936:Sample 12

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 12

text: ArrayExpress

characteristic: cell line

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI1 overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 12


E-MTAB-11936:Sample 13

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 13

text: ArrayExpress

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: GLI2 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 13

characteristic: title


E-MTAB-11936:Sample 14

text: Garvan Institute of Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11936:Sample 14

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI2 overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 14


E-MTAB-11936:Sample 15

characteristic: ENA-CHECKLIST

text: Garvan Institute of Medical Research

text: public

characteristic: SRA accession

text: E-MTAB-11936:Sample 15

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI3 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 15


E-MTAB-11936:Sample 16

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 16

text: ArrayExpress

characteristic: cell line

text: epithelial cell

text: human

characteristic: description

text: adult

text: melanoma

text: GLI3 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 16


E-MTAB-11936:Sample 17

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 17

text: ArrayExpress

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 17


E-MTAB-11936:Sample 18

text: Garvan Institute of Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11936:Sample 18

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: melanoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 18

characteristic: title


E-MTAB-11936:Sample 19

characteristic: ENA-CHECKLIST

text: Garvan Institute of Medical Research

text: public

characteristic: SRA accession

text: E-MTAB-11936:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI1 overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 19


E-MTAB-11936:Sample 20

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 20

text: ArrayExpress

characteristic: cell line

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI1 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 20


E-MTAB-11936:Sample 21

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 21

text: ArrayExpress

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: GLI2 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 21


E-MTAB-11936:Sample 22

text: Garvan Institute of Medical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11936:Sample 22

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI2 overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 22


E-MTAB-11936:Sample 23

characteristic: ENA-CHECKLIST

text: Garvan Institute of Medical Research

text: public

characteristic: SRA accession

text: E-MTAB-11936:Sample 23

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI3 overexpression

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 23

characteristic: title


E-MTAB-11936:Sample 24

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Garvan Institute of Medical Research

text: public

text: E-MTAB-11936:Sample 24

text: ArrayExpress

characteristic: cell line

text: epithelial cell

text: human

text: adult

text: melanoma

text: GLI3 overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 24


text: ICCRAM-University of Burgos

text: public

tag: Namespace:ICCRAM-University of Burgos

characteristic: cell type

text: Juan Jose Gonzalez Plaza

characteristic: collected by

text: human

characteristic: common name

text: GNA15 exposed cells

characteristic: description

text: Homo sapiens

text: Homo sapiens

characteristic: scientific name


text: ICCRAM-University of Burgos

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Juan Jose Gonzalez Plaza

text: human

text: Control cells

text: Homo sapiens

text: Homo sapiens

text: Control


characteristic: ENA-CHECKLIST

text: ICCRAM-University of Burgos

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Juan Jose Gonzalez Plaza

text: human

text: GNA35 exposed cells

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ICCRAM-University of Burgos

text: public

text: Juan Jose Gonzalez Plaza

text: human

text: GNA15d exposed cells

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Anopheles gambiae s.l

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id

text: Anopheles gambiae s.l


text: public

tag: Namespace:Sime Darby Plantation Technology Centre Sdn Bhd

text: Sample no.4 originated from Bukit Kerayong Estate, Peninsular Malaysia, Malaysia

text: Elaeidobius kamerunicus

text: Elaeidobius kamerunicus


E-MTAB-11956:Sample 1

tag: attribute

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 1

tag: Namespace:Wageningen University and Research

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: Protocols: The whole root and whole terminal leaflet samples were harvested post 1, 2, 3, 4, 5 day of second stressor. Root were harvested after cleaning them in water and flash freezing them immediately in liquid nitrogen. Both root and leaf samples were harvested within 45 secs. Three biological replicates were collected, each biological replicate consisting of one individual plant. Tomato, Solanum lycopersicum (Moneymaker), seeds were sown in the tray in climate cabinet with 22 °C diurnal and 18 °C nocturnal temperatures, 16L:8D photoperiod and 70 ± 10 % relative humidity. Ten days later, plants were individually transplanted into 14cm diameter pots containing silver sand . Post transplanting into pots containing silver sand, the plants were fertilized with fertilized water . The fertilized water was given twice a week. Nematodes - First stressor Nematode treatment was performed when plants were nineteen (19) days old from sowing. The density of nematodes used for infestation was 1000 nematodes per plant. The pipette tips were already present on both sides of root which were taken off and then 250 ul of nematode suspension was inoculated on both sides.Second stressor was performed when plants were 24 days old. Aphids - Macrosiphum euphorbiae (the potato aphid), were reared on sweet pepper plants (Capsicum annuum (Mandy variety, Rijk Zwaan (De Lier, The Netherlands)) in a climate-controlled cabinet with 16L:8D photoperiod, 21±2 °C and 70 ± 10 % relative humidity to produce nymphs for the experiments. Twelve 2-3 days old aphid nymphs were used for infestation, confined in the clip-cage (3 cm diameter) on terminal leaflet of one of the first two true leaves. Empty clip-cages were used as mock treatment. Aphids with CMV - Twenty-four hours earlier, we transferred 1-day old nymphs to CMV infected sweet pepper plants (Capsicum annuum (Mandy variety, Rijk Zwaan (De Lier, The Netherlands)) in a climate-controlled cabinet with 16L:8D photoperiod, 21±2 °C and 70 ± 10 % relative humidity . Twelve 2-3 days old aphid nymphs were used for infestation, confined in the clip-cage (3 cm diameter) on terminal leaflet of one of the first two true leaves. Empty clip-cages were used as mock treatment. CMV - Some crystal powder was sprayed on tomato terminal leaflet. Then CMV infected tobacco leaves were grinded with some buffer followed by finger infection to terminal leaflet. In order to infect the plants with Cladosporium fulvum, the small paint brush was dipped into fungal suspension (12.5 x 10^6/ml) and was rubbed onto the terminal leaflet.In order to elevate the infection rate, the plants were covered with transparent plastic bags for 24hrs. The transparent plastic bags were taken off after one day. RNA was using a Maxwell® 16 AS2000 instrument with a Maxwell® 16 LEV Plant RNA Kit (both Promega Corporation, Madison, WI, USA) following the manufacturer’s instructions with minor modifications. Namely, the homogenization step was performed by adding 600 μl of the chilled 1-thioglycerol/homogenization solution, and by vigorously vortex the sample for 1 minute. After the standard protocol was followed. RNA samples were stored at -80 ℃ until further use. After the total RNA extraction and DNase I treatment, magnetic beads with Oligo (dT) are used to isolate mRNA. Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. The suitable fragments are size-selected for the PCR amplification as templates.

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita + aphid Macrosiphum euphorbiae

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 1


E-MTAB-11956:Sample 10

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 10

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita + fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 10


E-MTAB-11956:Sample 100

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 100

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 100

characteristic: title


E-MTAB-11956:Sample 101

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 101

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 101


E-MTAB-11956:Sample 102

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 102

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Cauliflower Mosaic Virus

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 102


E-MTAB-11956:Sample 103

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 103

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae + Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 103


E-MTAB-11956:Sample 104

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 104

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 104


E-MTAB-11956:Sample 105

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 105

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 105

characteristic: title


E-MTAB-11956:Sample 106

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 106

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita + aphid Macrosiphum euphorbiae + Cauliflower Mosaic Virus

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 106


E-MTAB-11956:Sample 107

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 107

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 107


E-MTAB-11956:Sample 108

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 108

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 108


E-MTAB-11956:Sample 109

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 109

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 109


E-MTAB-11956:Sample 11

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 11

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 11

characteristic: title


E-MTAB-11956:Sample 110

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 110

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 110


E-MTAB-11956:Sample 111

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 111

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 111


E-MTAB-11956:Sample 112

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 112

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita + Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 112


E-MTAB-11956:Sample 113

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 113

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 113


E-MTAB-11956:Sample 114

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 114

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 114

characteristic: title


E-MTAB-11956:Sample 115

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 115

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 115


E-MTAB-11956:Sample 116

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 116

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 116


E-MTAB-11956:Sample 117

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 117

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 117


E-MTAB-11956:Sample 118

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 118

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita + none

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 118


E-MTAB-11956:Sample 119

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 119

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita + none

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 119

characteristic: title


E-MTAB-11956:Sample 12

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 12


E-MTAB-11956:Sample 120

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 120

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: nematode Meloidogyne incognita + none

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 120


E-MTAB-11956:Sample 121

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 121

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 121


E-MTAB-11956:Sample 122

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 122

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 122


E-MTAB-11956:Sample 123

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 123

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 123

characteristic: title


E-MTAB-11956:Sample 124

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 124

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 124


E-MTAB-11956:Sample 125

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 125

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 125


E-MTAB-11956:Sample 126

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 126

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 126


E-MTAB-11956:Sample 127

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 127

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 127


E-MTAB-11956:Sample 128

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 128

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 128

characteristic: title


E-MTAB-11956:Sample 129

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 129

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 129


E-MTAB-11956:Sample 13

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 13


E-MTAB-11956:Sample 130

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 130

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 130


E-MTAB-11956:Sample 131

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 131

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 131


E-MTAB-11956:Sample 132

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 132

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 132

characteristic: title


E-MTAB-11956:Sample 133

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 133

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 133


E-MTAB-11956:Sample 134

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 134

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 134


E-MTAB-11956:Sample 135

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 135

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 135


E-MTAB-11956:Sample 136

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 136

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 136


E-MTAB-11956:Sample 137

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 137

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 137

characteristic: title


E-MTAB-11956:Sample 138

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 138

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 138


E-MTAB-11956:Sample 139

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 139

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 139


E-MTAB-11956:Sample 14

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 14

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 14


E-MTAB-11956:Sample 140

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 140

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 140


E-MTAB-11956:Sample 141

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 141

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 141

characteristic: title


E-MTAB-11956:Sample 142

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 142

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 142


E-MTAB-11956:Sample 143

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 143

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 143