E-MTAB-11956:Sample 144

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 144

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 144


E-MTAB-11956:Sample 145

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 145

tag: Namespace:Wageningen University and Research

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: Protocols: The whole root and whole terminal leaflet samples were harvested post 1, 2, 3, 4, 5 day of second stressor. Root were harvested after cleaning them in water and flash freezing them immediately in liquid nitrogen. Both root and leaf samples were harvested within 45 secs. Three biological replicates were collected, each biological replicate consisting of one individual plant. Tomato, Solanum lycopersicum (Moneymaker), seeds were sown in the tray in climate cabinet with 22 °C diurnal and 18 °C nocturnal temperatures, 16L:8D photoperiod and 70 ± 10 % relative humidity. Ten days later, plants were individually transplanted into 14cm diameter pots containing silver sand . Post transplanting into pots containing silver sand, the plants were fertilized with fertilized water . The fertilized water was given twice a week. Nematodes - First stressor Nematode treatment was performed when plants were nineteen (19) days old from sowing. The density of nematodes used for infestation was 1000 nematodes per plant. The pipette tips were already present on both sides of root which were taken off and then 250 ul of nematode suspension was inoculated on both sides.Second stressor was performed when plants were 24 days old. Aphids - Macrosiphum euphorbiae (the potato aphid), were reared on sweet pepper plants (Capsicum annuum (Mandy variety, Rijk Zwaan (De Lier, The Netherlands)) in a climate-controlled cabinet with 16L:8D photoperiod, 21±2 °C and 70 ± 10 % relative humidity to produce nymphs for the experiments. Twelve 2-3 days old aphid nymphs were used for infestation, confined in the clip-cage (3 cm diameter) on terminal leaflet of one of the first two true leaves. Empty clip-cages were used as mock treatment. Aphids with CMV - Twenty-four hours earlier, we transferred 1-day old nymphs to CMV infected sweet pepper plants (Capsicum annuum (Mandy variety, Rijk Zwaan (De Lier, The Netherlands)) in a climate-controlled cabinet with 16L:8D photoperiod, 21±2 °C and 70 ± 10 % relative humidity . Twelve 2-3 days old aphid nymphs were used for infestation, confined in the clip-cage (3 cm diameter) on terminal leaflet of one of the first two true leaves. Empty clip-cages were used as mock treatment. CMV - Some crystal powder was sprayed on tomato terminal leaflet. Then CMV infected tobacco leaves were grinded with some buffer followed by finger infection to terminal leaflet. In order to infect the plants with Cladosporium fulvum, the small paint brush was dipped into fungal suspension (12.5 x 10^6/ml) and was rubbed onto the terminal leaflet.In order to elevate the infection rate, the plants were covered with transparent plastic bags for 24hrs. The transparent plastic bags were taken off after one day. RNA was using a Maxwell® 16 AS2000 instrument with a Maxwell® 16 LEV Plant RNA Kit (both Promega Corporation, Madison, WI, USA) following the manufacturer’s instructions with minor modifications. Namely, the homogenization step was performed by adding 600 μl of the chilled 1-thioglycerol/homogenization solution, and by vigorously vortex the sample for 1 minute. After the standard protocol was followed. RNA samples were stored at -80 ℃ until further use. After the total RNA extraction and DNase I treatment, magnetic beads with Oligo (dT) are used to isolate mRNA. Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. The suitable fragments are size-selected for the PCR amplification as templates.

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: nematode Meloidogyne incognita + Cauliflower Mosaic Virus

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 145

characteristic: title


E-MTAB-11956:Sample 146

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 146

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 146


E-MTAB-11956:Sample 147

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 147

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 147


E-MTAB-11956:Sample 148

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 148

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 148


E-MTAB-11956:Sample 149

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 149

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: nematode Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 149


E-MTAB-11956:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 15

characteristic: title


E-MTAB-11956:Sample 150

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 150

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 150


E-MTAB-11956:Sample 151

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 151

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 151


E-MTAB-11956:Sample 152

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 152

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 152


E-MTAB-11956:Sample 153

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 153

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 153


E-MTAB-11956:Sample 154

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 154

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 154

characteristic: title


E-MTAB-11956:Sample 155

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 155

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 155


E-MTAB-11956:Sample 156

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 156

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 156


E-MTAB-11956:Sample 157

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 157

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 157


E-MTAB-11956:Sample 158

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 158

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 158


E-MTAB-11956:Sample 159

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 159

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 159

characteristic: title


E-MTAB-11956:Sample 16

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 16

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 16


E-MTAB-11956:Sample 160

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 160

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae + Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 160


E-MTAB-11956:Sample 161

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 161

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 161


E-MTAB-11956:Sample 162

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 162

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 162


E-MTAB-11956:Sample 163

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 163

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 163

characteristic: title


E-MTAB-11956:Sample 164

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 164

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 164


E-MTAB-11956:Sample 165

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 165

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: fungus Cladosporium fulvum

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 165


E-MTAB-11956:Sample 166

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 166

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita + fungus Cladosporium fulvum

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 166


E-MTAB-11956:Sample 167

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 167

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 167


E-MTAB-11956:Sample 168

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 168

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 168

characteristic: title


E-MTAB-11956:Sample 169

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 169

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 169


E-MTAB-11956:Sample 17

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 17

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 17


E-MTAB-11956:Sample 170

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 170

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 170


E-MTAB-11956:Sample 171

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 171

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 171


E-MTAB-11956:Sample 172

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 172

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: nematode Meloidogyne incognita + aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 172

characteristic: title


E-MTAB-11956:Sample 173

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 173

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 173


E-MTAB-11956:Sample 174

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 174

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 174


E-MTAB-11956:Sample 175

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 175

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 175


E-MTAB-11956:Sample 176

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 176

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 176


E-MTAB-11956:Sample 177

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 177

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 177

characteristic: title


E-MTAB-11956:Sample 178

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 178

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita + aphid Macrosiphum euphorbiae + Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 178


E-MTAB-11956:Sample 179

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 179

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 179


E-MTAB-11956:Sample 18

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 18


E-MTAB-11956:Sample 180

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 180

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 180


E-MTAB-11956:Sample 19

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 19

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 19

characteristic: title


E-MTAB-11956:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 2

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 2


E-MTAB-11956:Sample 20

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 20


E-MTAB-11956:Sample 21

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 21

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 21


E-MTAB-11956:Sample 22

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 22

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 22


E-MTAB-11956:Sample 23

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 23

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 23

characteristic: title


E-MTAB-11956:Sample 24

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 24


E-MTAB-11956:Sample 25

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 25

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 25


E-MTAB-11956:Sample 26

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 26

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 26


E-MTAB-11956:Sample 27

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 27

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 27


E-MTAB-11956:Sample 28

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 28

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 28

characteristic: title


E-MTAB-11956:Sample 29

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 29

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 29


E-MTAB-11956:Sample 3

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 3


E-MTAB-11956:Sample 30

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 30

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 30


E-MTAB-11956:Sample 31

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 31


E-MTAB-11956:Sample 32

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 32

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 32

characteristic: title


E-MTAB-11956:Sample 33

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 33

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 33


E-MTAB-11956:Sample 34

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 34

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 34


E-MTAB-11956:Sample 35

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 35

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 35


E-MTAB-11956:Sample 36

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 36

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 36


E-MTAB-11956:Sample 37

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 37

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 37

characteristic: title


E-MTAB-11956:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 38

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 38


E-MTAB-11956:Sample 39

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 39

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 39


E-MTAB-11956:Sample 4

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 4

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 4


E-MTAB-11956:Sample 40

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 40

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 40


E-MTAB-11956:Sample 41

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 41

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 41

characteristic: title


E-MTAB-11956:Sample 42

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 42

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 42


E-MTAB-11956:Sample 43

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 43

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 43


E-MTAB-11956:Sample 44

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 44

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 44


E-MTAB-11956:Sample 45

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 45

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 45


E-MTAB-11956:Sample 46

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 46

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 46

characteristic: title


E-MTAB-11956:Sample 47

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 47

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 47


E-MTAB-11956:Sample 48

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 48

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 48


E-MTAB-11956:Sample 49

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 49

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 49


E-MTAB-11956:Sample 5

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 5


E-MTAB-11956:Sample 50

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 50

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 50

characteristic: title


E-MTAB-11956:Sample 51

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 51

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 51


E-MTAB-11956:Sample 52

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 52

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 52


E-MTAB-11956:Sample 53

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 53

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 53


E-MTAB-11956:Sample 54

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 54

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 54


E-MTAB-11956:Sample 55

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 55

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 55

characteristic: title


E-MTAB-11956:Sample 56

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 56

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 56


E-MTAB-11956:Sample 57

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 57

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 57


E-MTAB-11956:Sample 58

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 58

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 58


E-MTAB-11956:Sample 59

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 59

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 59


E-MTAB-11956:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 6

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 6

characteristic: title


E-MTAB-11956:Sample 60

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 60

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 60


E-MTAB-11956:Sample 61

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 61

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 61


E-MTAB-11956:Sample 62

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 62

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 62


E-MTAB-11956:Sample 63

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 63

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 63


E-MTAB-11956:Sample 64

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 64

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 64

characteristic: title


E-MTAB-11956:Sample 65

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 65

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 65


E-MTAB-11956:Sample 66

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 66

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 66


E-MTAB-11956:Sample 67

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 67

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 67


E-MTAB-11956:Sample 68

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 68

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 68


E-MTAB-11956:Sample 69

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11956:Sample 69

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Cauliflower Mosaic Virus

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 69

characteristic: title


E-MTAB-11956:Sample 7

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-11956:Sample 7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 7


E-MTAB-11956:Sample 70

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 70

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 70


E-MTAB-11956:Sample 71

characteristic: ENA-CHECKLIST

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 71

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 71


E-MTAB-11956:Sample 72

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 72

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 72


E-MTAB-11956:Sample 73

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 73

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: fungus Cladosporium fulvum

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 73

characteristic: title


E-MTAB-11956:Sample 74

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 74

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 74


E-MTAB-11956:Sample 75

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 75

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 75


E-MTAB-11956:Sample 76

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 76

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 76


E-MTAB-11956:Sample 77

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 77

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 77


E-MTAB-11956:Sample 78

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 78

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 78

characteristic: title


E-MTAB-11956:Sample 79

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 79

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 79


E-MTAB-11956:Sample 8

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 8


E-MTAB-11956:Sample 80

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 80

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 80


E-MTAB-11956:Sample 81

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 81

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 81


E-MTAB-11956:Sample 82

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 82

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 82

characteristic: title


E-MTAB-11956:Sample 83

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 83

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 83


E-MTAB-11956:Sample 84

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 84

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 84


E-MTAB-11956:Sample 85

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 85

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 85


E-MTAB-11956:Sample 86

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 86

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 86


E-MTAB-11956:Sample 87

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 87

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 87

characteristic: title


E-MTAB-11956:Sample 88

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 88

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 88


E-MTAB-11956:Sample 89

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 89

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 89


E-MTAB-11956:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 9

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 9


E-MTAB-11956:Sample 90

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 90

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: nematode Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 90


E-MTAB-11956:Sample 91

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 91

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 91

characteristic: title


E-MTAB-11956:Sample 92

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 92

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 92


E-MTAB-11956:Sample 93

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-11956:Sample 93

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 93


E-MTAB-11956:Sample 94

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 94

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 94


E-MTAB-11956:Sample 95

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 95

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

characteristic: organism part

text: Solanum lycopersicum

text: Sample 95


E-MTAB-11956:Sample 96

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 96

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

text: MoneyMaker

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: fungus Cladosporium fulvum

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 96

characteristic: title


E-MTAB-11956:Sample 97

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-11956:Sample 97

text: ArrayExpress

text: tomato

characteristic: common name

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 97


E-MTAB-11956:Sample 98

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11956:Sample 98

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: MoneyMaker

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 98


E-MTAB-11956:Sample 99

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11956:Sample 99

text: ArrayExpress

text: tomato

text: MoneyMaker

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: aphid Macrosiphum euphorbiae

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: terminal leaflet

text: Solanum lycopersicum

text: Sample 99


characteristic: ENA-FIRST-PUBLIC

text: CPC

text: public

text: human-oral

characteristic: broad-scale environmental context

characteristic: collection date

text: supra gingival plaque biofilm samples

text: City

characteristic: environmental medium

text: Australia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenomic surveillance

characteristic: investigation type

text: human oral metagenome

text: Paediatric Oral Microbiome

characteristic: project name

text: human oral metagenome

text: Illumina shotgun sequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CPC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: human-oral

text: supra gingival plaque biofilm samples

text: supra gingival plaque biofilm

text: Australia

text: metagenomic surveillance

text: human-oral

characteristic: local environmental context

text: human oral metagenome

text: Paediatric Oral Microbiome

text: human oral metagenome

text: Illumina shotgun sequencing

characteristic: title


E-MTAB-11964:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11964:Sample 1

tag: Namespace:Department of Animal Anatomy and Physiology, Faculty of Biology and Biotechnology, University of Warmia and Mazury

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: Protocols: In the laboratory, the CL was separated from the ovary, purified and placed on ice in a sterile petri dish. The CLs were cut into small pieces (100 ± 10 mg, collected in duplicate from each experimental replicate) and washed twice with sterile PBS. Each tissue explant was placed in a sterile culture vial with 2 mL of medium M199 (Sigma Aldrich, St. Louis, MO, USA), supplemented with 0.1% BSA fraction V (Roth, Germany) with antibiotics: nystatin (120 IU/mL; Sigma Aldrich) and gentamicin (40 mg/mL; Sigma Aldrich). The explants were pre-incubated for 2 h in a water bath at 37°C in an atmosphere 95% O2 and 5% CO2 and then treated for 6 h with PPARγ ligands: pioglitazone (P; synthetic agonist; 10 µM; Cayman Chemical Company) and T0070907 (T; antagonist; 10 µM, Cayman Chemical Company). The PPARγ ligands concentration and incubation times were selected according to our preliminary study and previous reports as described previously [12,14,15]. The controls (without the treatments) with culture medium and DMSO (solvent for PPARγ ligands) were also included. After the incubation, the tissue explants were washed with PBS and frozen at -80°C until RNA-Seq and quantitative Real‐Time PCR analysis. Total RNA from 24 samples (4 pigs x 2 stages of the estrous cycle x 3 treatments) was isolated using the “RNeasy Mini Kit” (Qiagen, Germany) in accordance to the manufacturer’s protocol. The purity and concentration of the isolated RNA was determined with the Tecan Infinite M200 plate reader (Tecan Group Ltd., Switzerland). Sample degradation was evaluated in the Agilent Bioanalyzer 2100 (Agilent Technology, USA). The samples with RNA Integrity Number (RIN) >7 were selected for the next analyses. Poly(A) RNA sequencing library was prepared following Illumina’s TruSeq-stranded-mRNA sample preparation protocol. Poly(A) tail-containing mRNAs were purified using oligo-(dT) magnetic beads with two rounds of purification. Subsequently, poly(A) RNA was fragmented using a divalent cation buffer in elevated temperature and then poly(dT) oligonucleotides were applied to transcribe RNA into cDNA. Next, the cDNA was processed to 3' tail adenylation and adapter ligation. The reverse transcription during the library preparation was strand-specific. Finally, pooled libraries were followed by sequencing procedure. Quality control analysis and quantification of the sequencing library were performed using Agilent Technologies 2100 Bioanalyzer High Sensitivity DNA Chip.

characteristic: description

text: explant culture

characteristic: growth condition

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: ovary

characteristic: organism part

text: corpus luteum

characteristic: sampling site

text: late-luteal phase

characteristic: sampling time point

text: Sus scrofa

text: female

characteristic: sex

text: Sample 1


E-MTAB-11964:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Animal Anatomy and Physiology, Faculty of Biology and Biotechnology, University of Warmia and Mazury

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11964:Sample 2

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 2


E-MTAB-11964:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11964:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 3

characteristic: title


E-MTAB-11964:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11964:Sample 4

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 4


E-MTAB-11964:Sample 5

text: public

text: E-MTAB-11964:Sample 5

text: ArrayExpress

text: pig

characteristic: description

text: explant culture

characteristic: growth condition

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: ovary

characteristic: organism part

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 5


E-MTAB-11964:Sample 6

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11964:Sample 6

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

characteristic: sampling site

text: late-luteal phase

characteristic: sampling time point

text: Sus scrofa

text: female

characteristic: sex

text: Sample 6


E-MTAB-11964:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11964:Sample 7

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 7


E-MTAB-11964:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11964:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 8

characteristic: title


E-MTAB-11964:Sample 9

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11964:Sample 9

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 9


E-MTAB-11964:Sample 10

text: public

text: E-MTAB-11964:Sample 10

text: ArrayExpress

text: pig

characteristic: description

text: explant culture

characteristic: growth condition

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: ovary

characteristic: organism part

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 10


E-MTAB-11964:Sample 11

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11964:Sample 11

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

characteristic: sampling site

text: late-luteal phase

characteristic: sampling time point

text: Sus scrofa

text: female

characteristic: sex

text: Sample 11


E-MTAB-11964:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11964:Sample 12

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: late-luteal phase

text: Sus scrofa

text: female

text: Sample 12


E-MTAB-11964:Sample 13

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11964:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 13

characteristic: title


E-MTAB-11964:Sample 14

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11964:Sample 14

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 14


E-MTAB-11964:Sample 15

text: public

text: E-MTAB-11964:Sample 15

text: ArrayExpress

text: pig

characteristic: description

text: explant culture

characteristic: growth condition

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: ovary

characteristic: organism part

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 15


E-MTAB-11964:Sample 16

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11964:Sample 16

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

characteristic: sampling site

text: mid-luteal phase

characteristic: sampling time point

text: Sus scrofa

text: female

characteristic: sex

text: Sample 16


E-MTAB-11964:Sample 17

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11964:Sample 17

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 17


E-MTAB-11964:Sample 18

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11964:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 18

characteristic: title


E-MTAB-11964:Sample 19

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11964:Sample 19

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 19


E-MTAB-11964:Sample 20

text: public

text: E-MTAB-11964:Sample 20

text: ArrayExpress

text: pig

characteristic: description

text: explant culture

characteristic: growth condition

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: ovary

characteristic: organism part

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 20


E-MTAB-11964:Sample 21

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-11964:Sample 21

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

characteristic: sampling site

text: mid-luteal phase

characteristic: sampling time point

text: Sus scrofa

text: female

characteristic: sex

text: Sample 21


E-MTAB-11964:Sample 22

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11964:Sample 22

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 22


E-MTAB-11964:Sample 23

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11964:Sample 23

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 23

characteristic: title


E-MTAB-11964:Sample 24

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11964:Sample 24

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: explant culture

text: Sus scrofa

text: Sus scrofa

text: ovary

text: corpus luteum

text: mid-luteal phase

text: Sus scrofa

text: female

text: Sample 24


text: Georgia State University

text: public

text: NicolasLoiseauOK1CTRLNACHOWNANABothRunsOKOK

tag: Namespace:Georgia State University

characteristic: collection date

text: house mouse

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NicolasLoiseauOK2CTRLNACHOWNANABothRunsOKOK

characteristic: Submitter Id

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


text: Georgia State University

text: public

text: NicolasLoiseauOK3CTRLNACHOWNANABothRunsOKOK

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

characteristic: INSDC center name

text: public

text: NicolasLoiseauOK4CTRLNACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


text: Georgia State University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NicolasLoiseauOK5CTRLNACHOWNANABothRunsOKOK

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

text: NicolasLoiseauOK6CTRLNACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NicolasLoiseauOK7CTRLNACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

text: NicolasLoiseauOK8CTRLNACHOWNANABothRunsOKOK

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NicolasLoiseauOK9CTRLNACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

characteristic: SRA accession

text: NicolasLoiseauOK10CTRLNACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NicolasLoiseauOK11CTRLNACHOWNANABothRunsOKOK

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

text: NicolasLoiseauOK12CTRLNACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NicolasLoiseauOK13FB1NACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

text: NicolasLoiseauOK14FB1NACHOWNANABothRunsOKOK

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NicolasLoiseauOK15FB1NACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

characteristic: SRA accession

text: NicolasLoiseauOK16FB1NACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NicolasLoiseauOK17FB1NACHOWNANABothRunsOKOK

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

text: NicolasLoiseauOK18FB1NACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NicolasLoiseauOK19FB1NACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

characteristic: scientific name

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Georgia State University

text: public

text: NicolasLoiseauOK20FB1NACHOWNANABothRunsOKOK

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

text: feces

text: France

text: host-associated

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq

characteristic: title


text: Georgia State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NicolasLoiseauOK21FB1NACHOWNANABothRunsOKOK

text: house mouse

text: terrestrial biome

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: Illumina MiSeq