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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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characteristic: geographic location (latitude)

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample from biological mother #1198 collected before delivery

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

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text: Illumina

text: parental stool sample


characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample from biological mother #1199 collected after delivery

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

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text: human feces metagenome

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text: parental stool sample

characteristic: title


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text: University of Helsinki

characteristic: INSDC last update

text: public

text: urban biome (ENVO:01000249)

text: Stool sample from biological mother #1200 collected after delivery

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

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characteristic: project name

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text: Illumina

characteristic: sequencing method

text: parental stool sample


characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome (ENVO:01000249)

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample from biological mother #1201 collected after delivery

characteristic: description

text: fecal material (ENVO:00002003)

characteristic: environmental medium

text: Finland

text: feces (UBERON:0001988)

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: parental stool sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Helsinki

characteristic: INSDC last update

text: public

text: urban biome (ENVO:01000249)

text: Stool sample from biological mother #1202 collected before delivery

text: fecal material (ENVO:00002003)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: feces (UBERON:0001988)

characteristic: host body product

text: female

text: fecal environment (ENVO:01001029)

text: human feces metagenome

text: human feces metagenome

text: Illumina

text: parental stool sample

characteristic: title


characteristic: External Id

text: University of Helsinki

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: urban biome (ENVO:01000249)

text: Stool sample from biological mother #1203 collected after delivery

text: fecal material (ENVO:00002003)

text: Finland

text: feces (UBERON:0001988)

text: female

characteristic: host sex

characteristic: host subject id

text: fecal environment (ENVO:01001029)

characteristic: local environmental context

text: human feces metagenome

characteristic: organism

characteristic: project name

text: human feces metagenome

text: Illumina

characteristic: sequencing method

text: parental stool sample


NSPWAT

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: NSPWAT

tag: Namespace:RADBOUD UNIVERSITY, Department Microbiology

characteristic: Submitter Id

text: Complete genome of Nitrospina watsonii, isolated by Spieck et al. 2014 (doi: 10.1016/j.syapm.2013.12.005)

characteristic: description

text: Nitrospina watsonii

characteristic: isolate

text: Nitrospina watsonii

text: Nitrospina watsonii

characteristic: strain

text: Nitrospina watsonii 347 genome


characteristic: External Id

text: Orebro University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Orebro University Hospital

text: Sweden, NA, Orebro

characteristic: country

text: WHO Reference

text: Hollow Fiber

characteristic: host

text: Yes

text: Mutant

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: title


text: University of Antwerp

text: public

characteristic: INSDC status

tag: Namespace:University of Antwerp

text: University of Verona

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Nasopharyngeal swab

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Veneto

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


name: E-MTAB-12188:human T cells extracted from spleen of control mice

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Hematology Research Unit, Groupe Interdisciplinaire de Genoproteomique Appliquee (GIGA)-I3, University of Liege, Liege, Belgium

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: T cell

text: human

characteristic: common name

text: Protocols: NSG mice were engrafted with human PBMC on day 0 to induce xenogeneic GVHD and treated (n=4) or not (n=3)with cyclophosphamide 100 mg/kg on day +3. Mice were sacrificed on day +6 and human CD3+ T cells were isolated from the spleen by immunomagnetic selection and pooled for each group. NSG mice were engrafted on day 0 with human PBMC and sacrificed on day 6 to harverst spleen. Human CD3+ T cells were isolated from mice spleen by immunomagnetic selection. Treated mice received a single Cyclosphophamide (100mg/kg) i.p. injection on day 3 post-transplantation Isolated cells were washed once with PBS + 0.04% BSA. Cell concentration was adjusted to 1,000 total cells/µl and 13,300 cells were loaded on Chromium Controller (10X Genomics). Samples were processed for droplet-based-RNA sequencing and libraries were prepared using Chromium Single Cell 3' Reagent Kits V3 according to manufacturer's protocol (10x Genomics). Amplified cDNA quality controls were performed with an Agilent bioanalyzer and final library profile were checked on Qiaxcel (Qiagen).

characteristic: description

text: adult

characteristic: developmental stage

text: graft versus host disease

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: transplanted in vivo into NSG mice for 6 days

characteristic: xenograft


name: E-MTAB-12188:human T cells extracted from spleen of PTCy-treated mice

text: Hematology Research Unit, Groupe Interdisciplinaire de Genoproteomique Appliquee (GIGA)-I3, University of Liege, Liege, Belgium

text: public

characteristic: INSDC status

text: ArrayExpress

text: T cell

text: human

text: adult

text: graft versus host disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: External Id

text: UNIVERSITY OF KIEL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF KIEL

text: human

text: Homo sapiens

text: Homo sapiens


Donor.capsules.lyophilized.sediment

text: UNIVERSITY OF KIEL

text: public

characteristic: SRA accession

text: Donor.capsules.lyophilized.sediment

characteristic: Submitter Id

text: human

characteristic: common name

text: Donor.capsules.lyophilized.sediment

text: Homo sapiens

text: Homo sapiens

text: Donor.capsules.lyophilized.sediment


Donor.capsules.lyophilized.supernatant

text: UNIVERSITY OF KIEL

text: public

text: Donor.capsules.lyophilized.supernatant

text: human

text: Donor.capsules.lyophilized.supernatant

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Donor.capsules.lyophilized.supernatant


characteristic: CRP

text: PASC

characteristic: Cohort

text: public

tag: Namespace:University of Colorado Anschutz Medical Campus

text: human feces

text: USA

characteristic: geographic location (country and-or sea)

text: human gut metagenome

text: human gut metagenome

text: Female

characteristic: sex


text: PASC

text: University of Colorado Anschutz Medical Campus

text: public

characteristic: INSDC status

text: human feces

text: USA

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: Male

characteristic: title


text: RC

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: human feces

text: USA

text: human gut metagenome

text: human gut metagenome

text: Female


text: PASC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: human feces

text: USA

text: human gut metagenome

text: human gut metagenome

text: Female


text: RC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human feces

text: USA

text: human gut metagenome

text: human gut metagenome

text: Male


text: RC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: human feces

text: USA

text: human gut metagenome

text: human gut metagenome

text: Male


text: HCMR-IMBBC

text: public

characteristic: Submitter Id

text: meagre

characteristic: common name

text: Meagre female individual blood used for short and long read genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre blood sample for genome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre brain sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

characteristic: description

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre brain sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre gills sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre gills sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre gonad sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre gonad sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre heart sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre heart sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre liver sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre liver sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre muscle sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre muscle sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre skin sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre skin sample for transcriptome sequencing


text: HCMR-IMBBC

text: public

text: meagre

text: Meagre spleen sample used for transcriptome sequencing, sourced from the same female individual used for genome sequencing

text: Argyrosomus regius

text: Argyrosomus regius

text: Meagre spleen sample for transcriptome sequencing


text: public

tag: Namespace:Institut de recherche experimentale et clinique - IREC

text: Isolate CTMA_1684 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Institut de recherche experimentale et clinique - IREC

text: public

text: Isolate CTMA_1685 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Isolate CTMA_1686 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Isolate CTMA_1687 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Isolate CTMA_1688 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Isolate CTMA_1689 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Isolate CTMA_1690 of Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

tag: Namespace:Systems Biology of Inflammation, the German Rheumatism Research Centre Berlin, a Leibniz Institute (DRFZ)

characteristic: age

text: ArrayExpress

characteristic: broker name

text: B cell

text: human

text: Protocols: Lithium Heparin (LiHep)-anticoagulated blood was withdrawn from a total of 24 healthy donors, 25 SLE patients and 23 pSS patients. PBMCs were isolated from LiHep-anticoagulated blood. The collected mononuclear cells were washed twice with PBS. cells were rested for 30 min at 37°C in ImmunoCult-XF T cell expansion medium (Stemcell). 96-well plate were coated with 0.1 µg/ml anti-CD3 (OKT3, eBioscience) for 2h at 37°C or PBS as control, washed two times with PBS, blocked with PBS/1% BSA for 30 min and washed two times with PBS. 1x106 PBMCs were seeded per well and incubated at 37°C and 5% CO2 in a humidified incubator for 18hours. The PicoPure RNA Kit (Thermo Fisher) was used for purification of total RNA from cells. Library generation has been completed using the SMARTer cDNA Synthesis and Nextera XT chemistry. With 500pg total RNA, cDNA pools were prepared using the SMART-Seq v4 Kit (Clontech Laboratories) to generate full-length cDNA from total RNA.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Systems Biology of Inflammation, the German Rheumatism Research Centre Berlin, a Leibniz Institute (DRFZ)

text: public

characteristic: INSDC status

text: ArrayExpress

text: B cell

text: human

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: B cell

text: human

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


text: public

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

text: B cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not available

text: ArrayExpress

text: B cell

text: human

text: adult

text: normal

characteristic: disease

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ArrayExpress

text: cytotoxic T cell

text: human

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: cytotoxic T cell

text: human

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not available

text: ArrayExpress

characteristic: broker name

text: cytotoxic T cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not available

text: ArrayExpress

text: cytotoxic T cell

text: human

text: adult

text: normal

characteristic: disease

text: CD8+; CD127+; CD25-

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: not available

text: ArrayExpress

text: cytotoxic T cell

text: human

text: adult

text: normal

text: CD8+; CD127+; CD25-

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: cytotoxic T cell

text: human

text: adult

text: normal

text: CD8+; CD127+; CD25-

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: cytotoxic T cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: CD8+; CD127+; CD25-

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: helper T cell

text: human

text: adult

text: normal

characteristic: disease

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characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: ArrayExpress

text: helper T cell

text: human

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

text: helper T cell

text: human

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not available

text: ArrayExpress

characteristic: broker name

text: helper T cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: CD4+; CD127+; CD25-

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not available

text: ArrayExpress

text: helper T cell

text: human

text: adult

text: normal

characteristic: disease

text: CD4+; CD127+; CD25-

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ArrayExpress

text: helper T cell

text: human

text: adult

text: normal

text: CD4+; CD127+; CD25-

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: helper T cell

text: human

text: adult

text: normal

text: CD4+; CD127+; CD25-

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: natural killer cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: CD16+; CD7+

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: natural killer cell

text: human

text: adult

text: normal

characteristic: disease

text: CD16+; CD7+

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: not available

text: ArrayExpress

text: natural killer cell

text: human

text: adult

text: normal

text: CD16+; CD7+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

text: natural killer cell

text: human

text: adult

text: normal

text: CD16+; CD7+

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: B cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Sjogren syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: B cell

text: human

text: adult

text: Sjogren syndrome

characteristic: disease

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male