text: Clinical Bioinformatics Area

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text: ena-upload-cli

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text: Human

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text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

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characteristic: isolate

characteristic: sample capture status

text: AND24207, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: SRA accession

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tag: Namespace:Clinical Bioinformatics Area

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

characteristic: description

text: Spain

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characteristic: geographic location (latitude)

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characteristic: organism

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characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: Spain

characteristic: geographic location (country and/or sea)

text: Human

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text: Homo Sapiens

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text: AND24210, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: geographic location (latitude)

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text: Human

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characteristic: organism

text: AND24211, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

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text: AND24212, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


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characteristic: INSDC center name

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text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

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text: AND24213, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: geographic location (latitude)

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text: Human

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characteristic: organism

text: AND24215, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: Human

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text: Homo Sapiens

characteristic: host scientific name

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text: not provided

characteristic: host subject id

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characteristic: isolate

characteristic: sample capture status

text: AND24216, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: SRA accession

text: ena-upload-cli

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characteristic: collecting institution

text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

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text: not provided

text: AND24218, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: ena-upload-cli

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

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text: Homo Sapiens

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characteristic: organism

text: AND24219, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: collection date

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text: Human

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text: Homo Sapiens

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characteristic: isolate

characteristic: sample capture status

text: AND24220, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

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characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

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text: AND24221, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

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text: Spain

characteristic: geographic location (latitude)

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text: Human

characteristic: host common name

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text: Homo Sapiens

text: not provided

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characteristic: organism

text: AND24222, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: Human

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text: Homo Sapiens

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text: not provided

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text: not provided

characteristic: isolate

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text: AND24223, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

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characteristic: SRA accession

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characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Puerta del Mar, Cadiz, Spain

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24224, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

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characteristic: organism

text: active surveillance in response to outbreak

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characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

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text: ena-upload-cli

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text: not provided

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text: Human

text: not provided

text: Homo Sapiens

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text: not provided

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text: AND24226, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: SRA accession

text: ena-upload-cli

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characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24227, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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text: Spain

characteristic: geographic location (latitude)

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text: Human

characteristic: host common name

text: not provided

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text: Homo Sapiens

text: not provided

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text: not provided

characteristic: organism

text: AND24228, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

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text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24229, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24230, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

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text: Homo Sapiens

text: not provided

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characteristic: organism

text: AND24231, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

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text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collection date

text: not provided

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text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

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text: not provided

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text: not provided

characteristic: isolate

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text: AND24232, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

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characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24233, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

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text: Homo Sapiens

text: not provided

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characteristic: organism

text: AND24234, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

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text: not provided

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text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24235, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24236, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Puerta del Mar, Cadiz, Spain

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

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text: not provided

characteristic: organism

text: AND24237, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24238, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak

text: AND24239, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24240, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24241, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24242, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24243, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24244, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24245, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24246, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24247, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24248, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24249, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Puerta del Mar, Cadiz, Spain

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24250, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24251, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: active surveillance in response to outbreak

text: AND24252, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24253, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24254, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24256, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24257, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24258, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24259, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collection date

text: not provided

text: Spain

text: Human

text: not provided

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND24260, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND24261, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND24262, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Centre of New Technologies University of Warsaw

text: narrow-headed vole

characteristic: common name

text: Les Pradelles

text: France

characteristic: geographic location (region and locality)

text: 45.734, 0.4292

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: Centre of New Technologies University of Warsaw

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: narrow-headed vole

text: Les Pradelles

characteristic: description

text: France

text: 45.734, 0.4292

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: narrow-headed vole

text: Obłazowa (WE)

text: Poland

text: 49.428, 20.126

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

characteristic: INSDC status

text: narrow-headed vole

text: nad Tunelem cave

text: Poland

text: 50.199, 19.832

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Roc-en-Pail

text: France

text: 47.033, -0.766

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Peskö

text: Slovakia

text: 48.492, 20.343

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Bišilu

text: Czechia

text: 49.948, 14.106

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Býčí

text: Czechia

text: 49.307, 16.694

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Malenice

text: Czechia

text: 49.134, 13.882

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Geißenklösterle

text: Germany

text: 48.398, 9.7722

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Novhorod-Severskyi

text: Ukraine

text: 51.983, 33.266

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Weinberghohlen

text: Germany

text: 48.775, 11.052

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Shelter III in Smoleń

text: Poland

text: 50.434, 19.674

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Perspektywiczna cave

text: Poland

text: 50.424, 19.781

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Komarowa

text: Poland

text: 50.723, 19.328

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Deszczowa

text: Poland

text: 50.587, 19.542

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Obłazowa 2

text: Poland

text: 49.428, 20.126

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Borsuka

text: Poland

text: 50.153, 19.705

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Jouvelle Tour Blanche

text: France

text: 45.366, 0.4472

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Amange - Grotte des Gorges

text: France

text: 47.159, 5.5537

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Cheremukhovo 1

text: Russia

text: 60.400, 60.057

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Taillis des Coteaux

text: France

text: 46.533, 0.8557

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Les Cottés

text: France

text: 46.608, 0.7643

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Zkamenělý zámek

text: Czechia

text: 49.667, 16.903

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Trou Al’Wesse

text: Belgium

text: 50.430, 5.2940

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Peskö

text: Slovakia

text: 48.492, 20.343

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Skalice

text: Czechia

text: 49.903, 14.119

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Muráň 3

text: Slovakia

text: 49.251, 20.174

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Šarkanica

text: Slovakia

text: 48.714, 19.968

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Denisova cave (East Chamber)

text: Russia

text: 51.397, 84.676

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Geißenklösterle

text: Germany

text: 48.398, 9.7722

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Obłazowa (WE)

text: Poland

text: 49.428, 20.126

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Cisowa Rock (RCR)

text: Poland

text: 49.43, 20.10

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Mironovskaya cave

text: Russia

text: 57.483, 61.717

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Pershinskaya cave

text: Russia

text: 57.450, 61.449

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Dyrovatyy kamen

text: Russia

text: 57.388, 58.531

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Teufelsrast

text: Austria

text: 48.450, 15.401

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Teufelslucke

text: Austria

text: 48.67, 15.85

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


text: public

text: narrow-headed vole

text: Bojnice 2

text: Czechia

text: 48.779, 18.574

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis

text: Lasiopodomys gregalis


E-MTAB-12320:SOX7-V5 E9.5

text: Centenary Institute

text: public

text: E-MTAB-12320:SOX7-V5 E9.5

tag: Namespace:Centenary Institute

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Sox7 v5 embryos at E9.5 and E10.5 were harvested in cold PBS, minced and subsequently digested in 0.05% trypsin/EDTA at 37°C for 10 mins. To isolate single cells, samples were passed in a 21 and 23 gauge needles. To cross link DNA-protein, samples were next treated with 1% formaldehyde buffer containing 50 mmol/L Hepes-KOH, 0.1 mol/L NaCl, 1 mM EDTA, 0.5 mmol/L EGTA for 10 mins with constant agitation at room temperature. Samples were then quenched with 1M glycine at pH7.5, fr 5 mins at room temperature, before washed again in PBS/10% FCS and rinsed subsequently in cold PBS. Cell pellet from each litter were snap freeze on dry ice, and stored in -80°C freezer. Cell pellets were thawed, and pooled together before cell lysis. Samples were sonicated, and 50ul from each sonication sample were set aside as the input DNA control. Samples were then incubated with 10ug V5 monoclonal antibody (R960CUS, Invitrogen). Following immunoprecipitation, the DNA for both input DNA control and samples were amplified using the TruSeq ChIPseq kit (Illumina, IP-202-1012) with 0.5 μmol/L of the universal forward and reverse PCR primer containing the index sequence of choice in 50 μL 1 x NEB Next High-Fidelity PCR Master Mix (New England Biolabs, M0541). Depending on the PCR efficiency, PCR cycles were conducted between 13 to 18 cycles. PCR product was finally purified with AMPure beads (1.8 volume) and eluted in 20 μL of resuspension buffer (Tris-Acetate 10 mmol/L pH8).

text: embryonic day 9.5

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

characteristic: strain

text: SOX7-V5 E9.5


E-MTAB-12320:SOX7-V5 E10.5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Centenary Institute

text: public

text: E-MTAB-12320:SOX7-V5 E10.5

text: ArrayExpress

text: house mouse

text: embryonic day 10.5

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: SOX7-V5 E10.5

characteristic: title


E-MTAB-12320:SOX7-V5 E10.5 input

characteristic: External Id

text: Centenary Institute

text: public

characteristic: SRA accession

text: E-MTAB-12320:SOX7-V5 E10.5 input

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: embryonic day 10.5

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: SOX7-V5 E10.5 input


E-MTAB-12320:SOX7-V5 E9.5 input

text: Centenary Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12320:SOX7-V5 E9.5 input

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 9.5

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: SOX7-V5 E9.5 input


text: Shanghai Tenth People's Hospital

text: public

characteristic: INSDC status

tag: Namespace:Shanghai Tenth People's Hospital

text: ArrayExpress

characteristic: broker name

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

text: wild type genotype

text: YPD medium supplemented with 600ng/ml aureobasidin A

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99


text: Shanghai Tenth People's Hospital

text: public

text: ArrayExpress

text: aneuploid

characteristic: genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IMEDEA

text: public

text: Gut microbiome of Sparus aurata and Xyrichtys novacula

text: fish gut metagenome

text: fish gut metagenome

text: Fish gut S aurata and X novacula


characteristic: External Id

text: University Health Network

text: public

tag: Namespace:University Health Network

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample taken 3 months post-FMT

text: stool

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Toronto

characteristic: geographic location (region and locality)

text: stool

characteristic: host body product

characteristic: local environmental context

text: human feces metagenome

characteristic: organism

characteristic: project name

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

text: University Health Network

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Stool sample taken 6 months post-FMT

characteristic: description

text: stool

text: Canada

text: Toronto

text: stool

text: human feces metagenome

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Health Network

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample taken pre-FMT

text: stool

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Toronto

text: stool

text: human feces metagenome

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing


text: University Health Network

text: public

text: Stool sample taken 1 month post-FMT

text: stool

text: Canada

characteristic: geographic location (longitude)

text: Toronto

characteristic: geographic location (region and locality)

text: stool

characteristic: host body product

characteristic: local environmental context

text: human feces metagenome

characteristic: organism

characteristic: project name

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

text: University Health Network

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Stool sample taken pre-MET2

characteristic: description

text: stool

text: Canada

text: Edmonton

text: stool

text: human feces metagenome

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Health Network

text: public

characteristic: broad-scale environmental context

characteristic: collection date

text: Stool sample taken 0.5 month post-MET2

text: stool

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Edmonton

text: stool

text: human feces metagenome

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing


text: University Health Network

text: public

text: Stool sample taken 1 month post-MET2

text: stool

text: Canada

characteristic: geographic location (longitude)

text: Edmonton

characteristic: geographic location (region and locality)

text: stool

characteristic: host body product

characteristic: local environmental context

text: human feces metagenome

characteristic: organism

characteristic: project name

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

text: University Health Network

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Stool sample taken 4 months post-MET2

characteristic: description

text: stool

text: Canada

text: Edmonton

text: stool

text: human feces metagenome

text: human feces metagenome

text: 2X150bp metagenomic Illumina sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SZEGED

text: public

tag: Namespace:UNIVERSITY OF SZEGED

text: The National Institute of Public Health (NIPH)

characteristic: collecting institution

characteristic: collection date

text: Dr. Helena Jirincova

characteristic: collector name

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: Prague

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: index case

characteristic: isolate

text: skin lesion

characteristic: isolation source host-associated

text: Chlorocebus sabaeus

text: Monkeypox virus

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Monkeypox virus

text: MPXV_NRL 4279/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Dr. Helena Jirincova

characteristic: description

text: Czech Republic

text: Prague

characteristic: geographic location (region and locality)

text: human

text: not provided

text: female

text: not provided

text: index case

text: skin lesion

text: Chlorocebus sabaeus

text: Monkeypox virus

characteristic: organism

text: Monkeypox virus

characteristic: title

text: MPXV_NRL 4279/2022


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Stockholm University

text: public

tag: Namespace:Stockholm University

text: Arctic fox

characteristic: common name

text: Vulpes lagopus

text: Vulpes lagopus

text: Arctic fox genomics


text: public

tag: Namespace:Philipps University Marburg, Bioinformatics Core Facility, Center for Tumor- and Immune Biology

text: ArrayExpress

characteristic: broker name

text: neuroblast (sensu Vertebrata)

text: human

text: Protocols: Cells were harvested with a spatula. 2 Lysis, sonication, preclearing, addition of 10% 3T3 chromatin (untreated, same for all samples), followed by the nucleic acid extraction protocol Cells were grown in DMEM (high Glucose), 10%FBS, 1%PenStrep at standard conditions. ISX or DMSO control was added, cells were harvested 8h later for ChIP. was performed with 1% formaldehyde in PBS for 10 min at room temperature followed by quenching with 125 mM glycin for 5 min. Cells were washed with ice-cold PBS twice and harvested using a cell scraper. The pellet was lysed in hypotonic buffer L1 (5 mM PIPES pH 8.0, 85 mM KCl, 0.5% (v/v) NP40) with protease inhibitor mix (Sigma, no. P8340, 1:1,000) for 20-40 min on ice. Nuclei were resuspended in ChIP RIPA buffer (10 mM Tris-HCl pH 7.5, 150 mM NaCl, 1% NP40 (v/v), 1% sodium deoxycholate (w/v), 1 mM EDTA) supplemented with 1:1,000 protease inhibitor mix (Sigma), incubated on ice for 10-20 min and sheared with a Branson S250D Sonifier (Branson Ultrasonics) using a microtip in 1 ml aliquots in 15 ml conical tubes. 52 pulses of 1 s, 4 s pause, 20% amplitude were applied with cooling of the sample in an ice-ethanol mixture or in a 15 ml tube cooler (Active Motif, no. 53077). A 15 min 20,000×g supernatant was precleared with 10 µg of IgG coupled to 100 µl of blocked sepharose slurry (see below) for 45 min at 4 °C with agitation. IP was carried out with 300 µl of precleared chromatin, equivalent to 3-8 × 106 cells. For MIRA, an aliquot of the sample was reverted as described below, purified on a Qiagen PCR purification column (no. 28106), and 250 ng of DNA were used according to the manufacturer’s instructions (Methylcollector Ultra, Active Motif, no. 55005). ChIP was performed and evaluated as described using 4 µg per sample of the respective antibodies. For precipitation, a mixture of protein A and protein G sepharose (GE Healthcare life sciences, no. 1752800 and no. 1706180) was washed twice with ChIP RIPA buffer and blocked with 1 g/l BSA and 0.4 g/l sonicated salmon sperm DNA (Life Technologies no. 15632011) overnight. 50 µl of blocked bead slurry (1:1 volume ratio with liquid phase) were used per IP. Samples were washed once in buffer I (20 mM Tris pH 8.1; 150 mM NaCl; 1% (v/v) Triton X-100; 0.1% (w/v) SDS; 2 mM EDTA), once in buffer II (20 mM Tris pH 8.1; 500 mM NaCl; 1% (v/v) Triton X-100; 0.1% (w/v) SDS; 2 mM EDTA), twice in buffer III (10 mM Tris pH 8.1; 250 mM LiCl; 1% (v/v) NP40; 1% (w/v) sodium deoxycholate; 1 mM EDTA) on ice, and twice in Qiagen buffer EB (no. 19086) at room temperature. Immune complexes were eluted twice with 100 mM NaHCO3 and 1% SDS (w/v) under agitation. Eluates were incubated overnight at 65 °C after adding 10 µg of RNase A and 20 µg of proteinase K in the presence of 180 mM NaCl, 35 mM Tris-HCl pH 6.8, and 9 mM EDTA. An input sample representing 1% of the chromatin used per IP was reverted in parallel. Samples were purified using the Qiagen PCR purification kit according to the manufacturer’s instructions, except that DNA-binding lipids were removed by washing the matrix twice with pure methanol. previous to the final washing step with the buffer included in the kit. Libraries were synthesized from 1-2 ng of genomic DNA using the MicroPlex kit (Diagenode, no. C05010011) according to the manufacturer’s instructions.

text: infant

characteristic: developmental stage

text: neuroblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Philipps University Marburg, Bioinformatics Core Facility, Center for Tumor- and Immune Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: neuroblast (sensu Vertebrata)

text: human

text: infant

text: neuroblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Cultured E. faecium from hospitalized patient

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

characteristic: isolate

text: Swab rectum

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Urine, midstream

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Blood culture

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Catheter tip

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab anus

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab surgical wound

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Swab

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Aspirate, ventricle (stomach)

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Drainage fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Fluid abdomen

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Tissue

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Blood culture, artery

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Pleural fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Catheter tip, drain

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Pus

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Blood, central line

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Swab rectum

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Ascitic/Peritoneal fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Urine, midstream

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Sputum

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Serom

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab perineum

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Blood culture

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Surgical implants?

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Swab anus

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Urine, catheter

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Pus Abdomen

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Drainage fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Tissue

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Blood culture, artery

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Tracheal secretion

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Swab rectum

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Pus

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab decubitus

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Fluid

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Urine, midstream

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Spinal fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Blood culture

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Aspirate, ventricle (stomach)

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Pleural fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Swab anus

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Urine, catheter

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Culture

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Ascitic/Peritoneal fluid

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab perineum

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Catheter tip

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Drainage fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab rectum

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Catheter tip, drain

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Blood culture, artery

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Tissue

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Pus

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Pus Abdomen

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Sample of secretion

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Blood culture

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Aspirate, ventricle (stomach)

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Enterococcus faecium

text: Swab wound

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

characteristic: isolate

text: Swab anus

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab surgical wound

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab wound abdomen

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: Denmark

characteristic: INSDC center name

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Urine, catheter

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Urine, midstream

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Spinal fluid

text: Enterococcus faecium

text: Enterococcus faecium


text: Denmark

text: public

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

text: Homo sapiens

text: Enterococcus faecium

text: Swab rectum

text: Enterococcus faecium

text: Enterococcus faecium


text: iBB-IST

text: public

text: Marine

characteristic: broad-scale environmental context

text: Genome sequence of Halobacillus sp. strain Cin3

characteristic: description

text: sponge

characteristic: environmental medium

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cinachyrella sp.

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: South China Sea

characteristic: local environmental context

text: Halobacillus sp. Cin3

text: Genome sequences of bacterial isolates from marine sponges from Taiwan

characteristic: project name

text: Halobacillus sp. Cin3

text: Illumina NextSeq 550

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Marine

text: Genome sequence of Alteromonas sp. strain CyTr2

text: sponge

text: Taiwan

text: Cinachyrella sp. / Paratetilla sp.

text: host-associated

text: South China Sea

text: Alteromonas sp. CyTr2

characteristic: organism

text: Alteromonas sp. CyTr2

text: Illumina NextSeq 550

characteristic: title


text: iBB-IST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Marine

characteristic: broad-scale environmental context

characteristic: collection date

text: Genome sequence of Pseudoalteromonas sp. strain Par1

characteristic: description

text: sponge

characteristic: environmental medium

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Paratetilla sp.

characteristic: host common name

text: host-associated

text: South China Sea

text: Pseudoalteromonas sp. PAR1

text: Pseudoalteromonas sp. PAR1

text: Illumina NextSeq 550


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

text: public

text: Marine

text: Genome sequence of Pseudomonas sp. strain ParCl1

text: sponge

text: Taiwan

text: Paratetilla sp.

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: South China Sea

characteristic: local environmental context

text: Pseudomonas sp. PARCl1

characteristic: project name

text: Pseudomonas sp. PARCl1

text: Illumina NextSeq 550

characteristic: sequencing method


text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Marine

characteristic: broad-scale environmental context

characteristic: collection date

text: Genome sequence of Vibrio sp. strain St2

text: sponge

text: Taiwan

text: Stylissa carteri

text: host-associated

text: South China Sea

text: Vibrio sp. St2

characteristic: organism

text: Vibrio sp. St2

text: Illumina NextSeq 550

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

text: public

text: Marine

text: Genome sequence of Paracoccus sp. strain ParArs4

characteristic: description

text: sponge

characteristic: environmental medium

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Paratetilla sp.

characteristic: host common name

text: host-associated

text: South China Sea

text: Paracoccus sp. PARArs4

text: Paracoccus sp. PARArs4

text: Illumina NextSeq 550


E-MTAB-12357:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12357:Sample 1

tag: Namespace:Laboratory of Pharmaceutical Microbiology Department of Pharmaceutical Sciences Ghent University

text: ArrayExpress

characteristic: broker name

text: Protocols: Cell material was collected from the surface of a tryptic soy agar plate with a sterile cotton swab. The cell material was suspended in 200 µl Tris-EDTA and added to 500 µl of lysis buffer (50 mM Tris-HCl [pH 8], 70 mM EDTA [pH 8], 1% sodium dodecyl sulfate), containing 0.5mg/ml pronase and acid-washed glass beads in a 2 ml micro centrifuge tube. After vigorous vortexing for 10 s, the samples were incubated at 37°C for 30 min. Then 400 µl of saturated ammonium acetate was added and the samples were vortexed for 10 s prior to centrifugation (2 min, 13,000 rpm). 600 µl of chloroform was added and the samples were vortexed for another 10 s. The phases were separated by centrifugation (5 min, 13,000 rpm) and 400 µl of the top aqueous phase was transferred to a DNase-free 1.5 ml micro centrifuge tube containing 1 ml of 100% ethanol. After centrifugation (5 min, 13,000 rpm) the pellet was washed with 500 µl of 70% ethanol and dried in a SpeedVac for 10 min. Finally, the extracted DNA was dissolved in 100 µl of low EDTA-Tris buffer (0.1 mM EDTA, 10 mM Tris-HCl [pH 8.5]) containing 0.5mg/ml RNase and was incubated at 37°C for 1 h. NEBNext Ultra II library prep

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: MIC fosmidomycin derivative CC366 = 2 µg/ml

characteristic: phenotype

text: Acinetobacter baumannii

text: LMG 10520

characteristic: strain

text: Sample 1


E-MTAB-12357:Sample 2

characteristic: ENA-CHECKLIST

text: Laboratory of Pharmaceutical Microbiology Department of Pharmaceutical Sciences Ghent University

text: public

characteristic: SRA accession

text: E-MTAB-12357:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: MIC fosmidomycin derivative CC366 = 4 µg/ml

text: Acinetobacter baumannii

text: NCTC 13423

text: Sample 2

characteristic: title


E-MTAB-12357:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12357:Sample 3

text: ArrayExpress

characteristic: description

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: MIC fosmidomycin derivative CC366 = 32 µg/ml

text: Acinetobacter baumannii

text: Sample 3


E-MTAB-12357:Sample 4

text: public

text: E-MTAB-12357:Sample 4

text: ArrayExpress

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: MIC fosmidomycin derivative CC366 = 64 µg/ml

text: Acinetobacter baumannii

text: Sample 4


text: THUENEN INSTITUTE OF BIODIVERSITY

text: public

text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21265

tag: Namespace:THUENEN INSTITUTE OF BIODIVERSITY

text: cropping

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

characteristic: elevation

text: soil

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: soil

characteristic: local environmental context

text: soil metagenome

text: Soil_Prokaryote_responses_to_antimetabolites

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21266

characteristic: Submitter Id

text: cropping

text: soil

text: Germany

text: soil

text: soil metagenome

characteristic: organism

text: soil metagenome

text: soil

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THUENEN INSTITUTE OF BIODIVERSITY

text: public

text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21267

text: cropping

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: elevation

text: soil

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: soil

text: soil metagenome

text: soil metagenome

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21268

text: cropping

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text: Germany

characteristic: geographic location (longitude)

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text: soil

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text: soil metagenome

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text: soil metagenome

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characteristic: ENA-LAST-UPDATE

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text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC last update

text: public

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21269

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text: cropping

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text: soil

text: Germany

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text: soil metagenome

characteristic: organism

text: soil metagenome

text: soil

characteristic: title


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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: public

text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21270

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characteristic: elevation

text: soil

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text: Germany

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text: soil

text: soil metagenome

text: soil metagenome

text: soil


characteristic: ENA-LAST-UPDATE

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: public

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21271

text: cropping

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characteristic: investigation type

text: soil

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characteristic: project name

text: soil metagenome

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text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC center name

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text: public

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:582-21272

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text: cropping

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text: soil

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characteristic: organism

text: soil metagenome

text: soil

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC last update

text: public

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21273

text: cropping

characteristic: depth

characteristic: description

characteristic: elevation

text: soil

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

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text: soil

text: soil metagenome

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characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC center name

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text: public

text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21274

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characteristic: geographic location (longitude)

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text: THUENEN INSTITUTE OF BIODIVERSITY

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characteristic: ENA-CHECKLIST

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21276

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characteristic: ENA-LAST-UPDATE

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21277

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characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21278

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text: soil

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text: soil metagenome

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21279

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text: soil

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characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:583-21280

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characteristic: geographic location (longitude)

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characteristic: ENA-LAST-UPDATE

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text: THUENEN INSTITUTE OF BIODIVERSITY

characteristic: INSDC last update

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text: soil

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text: soil metagenome

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characteristic: title


characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

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characteristic: ENA-LAST-UPDATE

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: soil metagenome

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characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: public

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text: soil metagenome

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text: soil

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characteristic: ENA-CHECKLIST

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: ena-SAMPLE-TAB-02-11-2022-15:07:59:584-21286

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text: soil metagenome

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text: THUENEN INSTITUTE OF BIODIVERSITY

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text: public

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text: soil metagenome

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