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GM

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text: ena-SAMPLE-TAB-07-09-2022-08:46:20:184-77133

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text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77134

text: Input

text: Candida albicans SC5314

text: Candida albicans SC5314


text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77135

text: Input

text: Candida albicans SC5314

text: Candida albicans SC5314


text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77136

text: Input

text: Candida albicans SC5314

text: Candida albicans SC5314


text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77137

text: ChIP

text: Candida albicans SC5314

text: Candida albicans SC5314


text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77138

text: ChIP

text: Candida albicans SC5314

text: Candida albicans SC5314


text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77139

text: ChIP

text: Candida albicans SC5314

text: Candida albicans SC5314


text: Univesity of Salerno

text: public

text: ena-SAMPLE-TAB-07-09-2022-08:46:20:185-77140

text: ChIP

text: Candida albicans SC5314

text: Candida albicans SC5314


text: public

text: E-MTAB-12152:Bukammen_wounded_inoculated_R1

tag: Namespace:Department of Molecular Plant Biology, Division for Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO)

text: ArrayExpress

characteristic: broker name

text: wild strawberry

text: Bukammen

characteristic: cultivar

text: Protocols: All Fragaria vesca samples were collected from the crown (rhizome) of the plant, flash-frozen in liquid nitrogen and stored at -80 °C until RNA isolation. Sampling was performed at 48 hours after i) wounded and inoculated with Phytophthora cactorum, ii) wounded and inoculated with water, and iii) untreated control. Phytophthora cactorum was grown in V8 agar for two weeks at room temperature (20 °C) and zoospore suspension were made in autoclaved pond water. Zoospores were observed under a light microscope and counted using a hemocytometer-type grid KOVA® Glasstic Slide (Hycor, USA). Plants were gently wounded in the crown with a sterilised scalpel and inoculated with 2 mL of Phytophthora cactorum zoospore suspension (2 × 105 spores/mL) or water. Frozen crown tissues were ground using liquid nitrogen and total RNA was isolated using the SpectrumTM Plant Total RNA Kit (Sigma-Aldrich, USA) according to the manufacturer’s instruction. RNA was dissolved in elution buffer provided with the kit and diluted in nuclease-free water. RNA quantity and quality was measured with the Nanodrop 2000 Spectrophotometer (Thermo Scientific, USA) and the Agilent RNA 6000 Nano kit with Agilent 2100 Bioanalyzer (Agilent Technology, USA). Libraries were prepared with the TruSeqTM stranded total RNA library prep kit (Illumina, USA).

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

characteristic: individual

text: Phytophthora cactorum

characteristic: infect

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum resistant

characteristic: phenotype

text: Fragaria vesca


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Molecular Plant Biology, Division for Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research (NIBIO)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12152:Bukammen_wounded_inoculated_R2

text: ArrayExpress

text: wild strawberry

characteristic: common name

text: Bukammen

characteristic: description

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12152:Bukammen_wounded_inoculated_R3

characteristic: Submitter Id

text: ArrayExpress

text: wild strawberry

text: Bukammen

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

characteristic: organism

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca

characteristic: title


text: public

text: E-MTAB-12152:Bukammen_wounded_inoculated_R4

text: ArrayExpress

characteristic: broker name

text: wild strawberry

text: Bukammen

characteristic: cultivar

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

characteristic: individual

text: Phytophthora cactorum

characteristic: infect

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12152:NCGR1218_wounded_inoculated_R1

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum susceptible

characteristic: phenotype

text: Fragaria vesca


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12152:NCGR1218_wounded_inoculated_R2

text: ArrayExpress

text: wild strawberry

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum susceptible

text: Fragaria vesca


text: public

characteristic: SRA accession

text: E-MTAB-12152:NCGR1218_wounded_inoculated_R3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild strawberry

characteristic: cultivar

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

characteristic: organism

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum susceptible

text: Fragaria vesca

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12152:NCGR1218_wounded_inoculated_R4

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

characteristic: individual

text: Phytophthora cactorum

characteristic: infect

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum susceptible

text: Fragaria vesca


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12152:NCGR1603_wounded_inoculated_R1

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum resistant

characteristic: phenotype

text: Fragaria vesca


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12152:NCGR1603_wounded_inoculated_R2

characteristic: Submitter Id

text: ArrayExpress

text: wild strawberry

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-12152:NCGR1603_wounded_inoculated_R3

text: ArrayExpress

characteristic: broker name

text: wild strawberry

characteristic: cultivar

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Phytophthora cactorum

text: Fragaria vesca

characteristic: organism

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12152:NCGR1603_wounded_inoculated_R4

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

characteristic: individual

text: Phytophthora cactorum

characteristic: infect

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


name: E-MTAB-12152:Bukammen_wounded and inoculated with water_R1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild strawberry

text: Bukammen

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum resistant

characteristic: phenotype

text: Fragaria vesca


name: E-MTAB-12152:Bukammen_wounded and inoculated with water_R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild strawberry

characteristic: common name

text: Bukammen

characteristic: description

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


name: E-MTAB-12152:Bukammen_wounded and inoculated with water_R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: wild strawberry

text: Bukammen

characteristic: cultivar

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

characteristic: organism

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca

characteristic: title


name: E-MTAB-12152:Bukammen_wounded and inoculated with water_R4

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild strawberry

text: Bukammen

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

characteristic: individual

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


name: E-MTAB-12152:NCGR1218_wounded and inoculated with water_R1

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum susceptible

characteristic: phenotype

text: Fragaria vesca


name: E-MTAB-12152:NCGR1218_wounded and inoculated with water_R2

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild strawberry

characteristic: common name

characteristic: description

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum susceptible

text: Fragaria vesca


name: E-MTAB-12152:NCGR1218_wounded and inoculated with water_R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: wild strawberry

characteristic: cultivar

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

characteristic: organism

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum susceptible

text: Fragaria vesca


name: E-MTAB-12152:NCGR1218_wounded and inoculated with water_R4

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum susceptible

text: Fragaria vesca

characteristic: title


name: E-MTAB-12152:NCGR1603_wounded and inoculated with water_R1

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

characteristic: individual

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum resistant

text: Fragaria vesca


name: E-MTAB-12152:NCGR1603_wounded and inoculated with water_R2

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild strawberry

characteristic: common name

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

characteristic: phenotype

text: Fragaria vesca


name: E-MTAB-12152:NCGR1603_wounded and inoculated with water_R3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: wild strawberry

characteristic: cultivar

characteristic: description

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


name: E-MTAB-12152:NCGR1603_wounded and inoculated with water_R4

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild strawberry

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: mixed pool of 4 plants

text: Fragaria vesca

characteristic: organism

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild strawberry

text: Bukammen

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

characteristic: individual

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

text: Fragaria vesca

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild strawberry

characteristic: common name

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

characteristic: organism part

text: Phytophthora cactorum susceptible

text: Fragaria vesca


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: wild strawberry

characteristic: cultivar

text: sporophyte vegetative stage

text: wild type genotype

text: mixed pool of 4 plants

text: Fragaria vesca

text: Fragaria vesca

text: rhizome

text: Phytophthora cactorum resistant

characteristic: phenotype

text: Fragaria vesca


text: The Kennel Club Genetics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:The Kennel Club Genetics Centre

text: Border Terrier

characteristic: breed

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: female

characteristic: sex

text: Border Terrier WGS


E-MTAB-12144:LU65 parental cells

characteristic: ENA-CHECKLIST

text: National Taiwan University Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12144:LU65 parental cells

tag: Namespace:National Taiwan University Hospital

text: ArrayExpress

text: lung cancer cell

text: human

text: Protocols: LU65 cells and MiaPaCa2 cells were grown in increasing dose of Sotorasib for more than 1 month to establish sotorasib-resistant cells. Cell pellets of parental and sotorasib-resistant cells were collected. Sotorasib-resistant cells were grown in culture media with 5 micromole sotorasib Genomic DNA was extracted using DNA purification kits from Qiagen 100ng of DNA was used for DNA library preparation with Illumina DNA Prep with Enrichment kit

characteristic: description

text: lung cancer

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: parental line

text: Homo sapiens

text: LU65 parental cells


E-MTAB-12144:MIAPaCa2 parental cells

characteristic: ENA-FIRST-PUBLIC

text: National Taiwan University Hospital

text: public

characteristic: SRA accession

text: E-MTAB-12144:MIAPaCa2 parental cells

characteristic: Submitter Id

text: ArrayExpress

text: MIA Paca-2

text: pancreatic ductal cell

text: human

characteristic: common name

text: pancreatic carcinoma

text: Homo sapiens

text: Homo sapiens

text: parental line

text: Homo sapiens

text: MIAPaCa2 parental cells

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: National Taiwan University Hospital

text: public

text: E-MTAB-12144:Sotorasib-resistant LU65 cells

text: ArrayExpress

characteristic: broker name

text: lung cancer cell

text: human

text: lung cancer

text: Homo sapiens

text: Homo sapiens

text: Sotorasib resistant

text: Homo sapiens

text: Sotorasib-resistant LU65 cells


text: National Taiwan University Hospital

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12144:Sotorasib-resistant MIAPaCa2 cells

text: ArrayExpress

text: MIA Paca-2

text: pancreatic ductal cell

text: human

text: pancreatic carcinoma

text: Homo sapiens

text: Homo sapiens

text: Sotorasib resistant

characteristic: phenotype

text: Homo sapiens

text: Sotorasib-resistant MIAPaCa2 cells


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Philipps University Marburg, Bioinformatics Core Facility, Center for Tumor- and Immune Biology,

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: human

text: Protocols: Cells were harvested and FACS sorted (FACSAria™ III (BD Biosciences)) for live cells before nucleic acid extraction CD8+ T cells were purified from human blood via buffy coat and purification of CD8+ positive cells using MACS and cultured (3-4 million) separately in plasma group(1ml) and ascites group(1ml) with activation beads ratio(cell : beads=2:1) for 16hr. Qiagen, RNeasy Plus Micro Kit Cat# 74034 Lexogen Quantseq

text: adult

characteristic: developmental stage

text: normal

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


text: Philipps University Marburg, Bioinformatics Core Facility, Center for Tumor- and Immune Biology,

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: human

characteristic: description

text: adult

text: normal

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: CHINA ACADEMY

text: public

characteristic: SRA accession

tag: Namespace:CHINA ACADEMY

characteristic: Submitter Id

text: sludge

characteristic: environment (biome)

text: anearobic digestion

characteristic: environment (feature)

text: anearobic digestion

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: environmental samples

characteristic: project name

text: environmental samples

text: Miseq

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS-SU Station Biologique de Roscoff

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-07-09-2022-16:18:42:273-77914

tag: Namespace:CNRS-SU Station Biologique de Roscoff

text: haploid lab strain derived from Ec17 strain collected in 1988 in San Juan de Marcona, Peru

characteristic: description

text: young partheno-sporophyte (2 to 5 cells)

text: Ectocarpus sp. 1c

text: Ectocarpus sp. 1c

text: male

characteristic: sex

characteristic: strain

text: Ec32 young pSP


characteristic: ENA-FIRST-PUBLIC

text: CNRS-SU Station Biologique de Roscoff

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-07-09-2022-16:18:42:273-77915

characteristic: Submitter Id

text: mutant obtain fro Ec32

text: Ectocarpus sp. 1c

characteristic: organism

text: Ectocarpus sp. 1c

text: male

text: Ec800 young pSP


text: CNRS-SU Station Biologique de Roscoff

text: public

text: ena-SAMPLE-TAB-07-09-2022-16:18:42:273-77916

text: mutant obtained from Ec32 after 30mn of UVB irradation in july 2013

text: Ectocarpus sp. 1c

text: Ectocarpus sp. 1c

text: male

text: Ec801 young pSP


text: Faculty of Forestry and Wood Sciences

text: public

tag: Namespace:Faculty of Forestry and Wood Sciences

text: Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, Kam�ck� 129, Suchdol, 165 21 Prague 6, Czech Republic

text: Juan Jos� Gonz�lez Plaza

text: Nest material, colony 1

text: Yes

text: French Guiana

characteristic: geographic location (country and/or sea)

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Anoplotermes banksii


text: Faculty of Forestry and Wood Sciences

text: public

text: Juan Jos� Gonz�lez Plaza

text: Nest material, colony 2

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Anoplotermes banksii

characteristic: title


text: Faculty of Forestry and Wood Sciences

text: public

text: Juan Jos� Gonz�lez Plaza

text: Nest material, colony 3

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Anoplotermes banksii


text: Faculty of Forestry and Wood Sciences

text: public

text: Juan Jos� Gonz�lez Plaza

text: Nest material, colony 4

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Anoplotermes banksii


Cefre.CM.II

text: Faculty of Forestry and Wood Sciences

text: public

text: Cefre.CM.II

text: Jan Sobotnik

text: Nest material, single colony

text: Yes

text: Cameroon

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cephalotermes rectangularis


Conca.FG.II

text: Faculty of Forestry and Wood Sciences

text: public

text: Conca.FG.II

text: Patrik Soukup

text: Nest material, single colony

text: Yes

text: French Guiana

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Constrictotermes cavifrons


Copfor.BR.I

text: Faculty of Forestry and Wood Sciences

text: public

text: Copfor.BR.I

text: Juan Jos� Gonz�lez Plaza

text: Nest material, single colony

text: Yes

text: Czech Republic

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Coptotermes formosanus


Cubin.MW.IV

text: Faculty of Forestry and Wood Sciences

text: public

text: Cubin.MW.IV

text: Petr Stiblik

text: Nest material, single colony

text: Yes

text: Malawi

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cubitermes inclitus


text: Faculty of Forestry and Wood Sciences

text: public

text: Petr Stiblik

text: Nest material, colony 1

text: Yes

text: Malawi

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cubitermes muneris


text: Faculty of Forestry and Wood Sciences

text: public

text: Petr Stiblik

text: Nest material, colony 2

text: Yes

text: Malawi

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cubitermes muneris


Cubpl.CM.IV

text: Faculty of Forestry and Wood Sciences

text: public

text: Cubpl.CM.IV

text: Jan Sobotnik

text: Nest material, single colony

text: Yes

text: Cameroon

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cubitermes planifrons


Cubsu.CM.IV

text: Faculty of Forestry and Wood Sciences

text: public

text: Cubsu.CM.IV

text: Jan Sobotnik

text: Nest material, single colony

text: Yes

text: Cameroon

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cubitermes sulcifrons


Cubug.MW.IV

text: Faculty of Forestry and Wood Sciences

text: public

text: Cubug.MW.IV

text: Petr Stiblik

text: Nest material, single colony

text: Yes

text: Malawi

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Cubitermes aff. ugandensis


EmbneFG.III

text: Faculty of Forestry and Wood Sciences

text: public

text: EmbneFG.III

text: Patrik Soukup

text: Nest material, single colony

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Embiratermes neotenicus


Labla.FG.IV

text: Faculty of Forestry and Wood Sciences

text: public

text: Labla.FG.IV

text: Patrik Soukup

text: Nest material, single colony

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Labiotermes labralis


Micsp.CM.II

text: Faculty of Forestry and Wood Sciences

text: public

text: Micsp.CM.II

text: Jan Sobotnik

text: Nest material, single colony

text: Yes

text: Cameroon

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Microcerotermes sp


text: Faculty of Forestry and Wood Sciences

text: public

text: Jan Sobotnik

text: Nest material, colony 1

text: Yes

text: Cameroon

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes lujae


text: Faculty of Forestry and Wood Sciences

text: public

text: Jan Sobotnik

text: Nest material, colony 2

text: Yes

text: Cameroon

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes lujae


text: Faculty of Forestry and Wood Sciences

text: public

text: Jan Sobotnik

text: Nest material, colony 3

text: Yes

text: Cameroon

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes lujae


text: Faculty of Forestry and Wood Sciences

text: public

text: Patrik Soukup

text: Nest material, colony 1

text: Yes

text: French Guiana

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes similis


text: Faculty of Forestry and Wood Sciences

text: public

text: Patrik Soukup

text: Nest material, colony 2

text: Yes

text: French Guiana

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes similis


Nassp.BR.II

text: Faculty of Forestry and Wood Sciences

text: public

text: Nassp.BR.II

text: Juan Jos� Gonz�lez Plaza

text: Nest material, single colony

text: Yes

text: Czech Republic

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes sp


Nassp.CM.II

text: Faculty of Forestry and Wood Sciences

text: public

text: Nassp.CM.II

text: Jan Sobotnik

text: Nest material, single colony

text: Yes

text: Cameroon

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Nasutitermes sp


text: Faculty of Forestry and Wood Sciences

text: public

text: Patrik Soukup

text: Nest material, colony 1

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Neocapritermes taracua


text: Faculty of Forestry and Wood Sciences

text: public

text: Juan Jos� Gonz�lez Plaza

text: Nest material, colony 2

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Neocapritermes taracua


text: Faculty of Forestry and Wood Sciences

text: public

text: Juan Jos� Gonz�lez Plaza

text: Nest material, colony 3

text: Yes

text: French Guiana

text: Juan Jos� Gonz�lez Plaza

text: termite metagenome

text: termite metagenome

text: Nest

text: Neocapritermes taracua


SilvheFG.III

text: Faculty of Forestry and Wood Sciences

text: public

text: SilvheFG.III

text: Patrik Soukup

text: Nest material, single colony

text: Yes

text: French Guiana

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Silvestritermes heyeri


Terfa.FG.III

text: Faculty of Forestry and Wood Sciences

text: public

text: Terfa.FG.III

text: Patrik Soukup

text: Nest material, single colony

text: Yes

text: French Guiana

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Nest

text: Termes fatalis


NegativeITS

text: Faculty of Forestry and Wood Sciences

text: public

text: NegativeITS

text: Juan Jos� Gonz�lez Plaza

text: Negative control

text: Yes

text: Czech Republic

text: Tereza Berankov�

text: termite metagenome

text: termite metagenome

text: Negative control

text: Negative control


text: public

tag: Namespace:Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: rainbow trout

characteristic: common name

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss

text: Effect of chitin on trout gut microbiota


characteristic: ENA-CHECKLIST

text: Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: public

text: rainbow trout

text: Oncorhynchus mykiss

text: Oncorhynchus mykiss


characteristic: ENA-LAST-UPDATE

text: Ghent university

text: public

tag: Namespace:Ghent university

text: Commensalibacter sp. R-79671 isolated from rowan berries

text: Belgium

characteristic: isolate

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. R-79671


characteristic: External Id

text: Ghent university

characteristic: INSDC center name

text: public

text: Commensalibacter sp. R-79672 isolated from rowan berries

text: Belgium

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. R-79672


text: Ghent university

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Commensalibacter sp. R-79673 isolated from rowan berries

text: Belgium

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. R-79673


text: Ghent university

text: public

characteristic: INSDC status

text: Commensalibacter sp. R-79674 isolated from rowan berries

characteristic: description

text: Belgium

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. LMG 31819

text: Commensalibacter sp. R-79674


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8978

tag: Namespace:UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8979

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8980

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8981

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8982

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8983

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8984

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8985

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8986

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8987

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8988

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8989

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8990

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8991

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8992

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8993

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8994

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8995

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8996

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8997

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8998

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-8999

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-9000

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-9001

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-9002

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:997-9003

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9004

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9005

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9006

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9007

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9008

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9009

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9010

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9011

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9012

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9013

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9014

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9015

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9016

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9017

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9018

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9019

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9020

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9021

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9022

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9023

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-09:53:36:998-9024

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN, DEPARTMENT OF VETERINARY CLINICAL SCIENCE

text: Intestine environment

characteristic: broad-scale environmental context

unit: year

characteristic: collection date

text: fecal sample

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dog

characteristic: host common name

text: feces

characteristic: local environmental context

text: canine metagenome

text: 16S metabarcoding dogs fed probiotic and control diet

characteristic: project name

text: canine metagenome

text: Illumina MiSeq

characteristic: sequencing method


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN, DEPARTMENT OF VETERINARY CLINICAL SCIENCE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Intestine environment

text: fecal sample

text: Denmark

characteristic: geographic location (country and/or sea)

text: Dog

text: feces

text: canine metagenome

characteristic: organism

text: canine metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:767-8540

text: Chinese hamster

characteristic: common name

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:767-8541

text: Chinese hamster

characteristic: description

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:767-8542

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:767-8543

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:767-8544

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:767-8545

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8546

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8547

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8548

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8549

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8550

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8551

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8552

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8553

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8554

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8555

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8556

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8557

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8558

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8559

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8560

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8561

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8562

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8563

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8564

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8565

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8566

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8567

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8568

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8569

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:768-8570

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8571

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8572

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8573

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8574

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8575

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8576

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8577

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8578

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8579

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8580

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8581

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8582

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8583

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8584

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8585

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8586

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: public

text: ena-SAMPLE-TAB-12-09-2022-15:07:01:769-8587

text: Chinese hamster

text: Cricetulus griseus

text: Cricetulus griseus


text: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

text: public

text: Genome sequenced isolate from paediatric patient biopsy

text: Streptococcus sanguinis

text: Streptococcus sanguinis


text: public

text: Enterococcus durans

text: Enterococcus durans


text: public

text: Niallia circulans

text: Niallia circulans


text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Bacillus sp. hb116

text: Bacillus sp. hb116


text: public

text: Bacillus sp. LWYT1312

text: Bacillus sp. LWYT1312


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Streptococcus infantis

text: Streptococcus infantis


text: public

text: Coprobacillus sp. 8_2_54BFAA

text: Coprobacillus sp. 8_2_54BFAA


text: public

text: Clostridiales bacterium VE202-15

text: Clostridiales bacterium VE202-15


text: public

text: Collinsella aerofaciens

text: Collinsella aerofaciens


text: public

text: Bacteroides caccae

text: Bacteroides caccae


text: public

text: Phocaeicola plebeius

text: Phocaeicola plebeius


text: public

text: bacterium NLAE-zl-H413

text: bacterium NLAE-zl-H413


text: public

text: bacterium LF-3

text: bacterium LF-3


text: public

text: Clostridiales bacterium CCNA10

text: Clostridiales bacterium CCNA10


text: public

text: [Clostridium] innocuum

text: [Clostridium] innocuum


text: public

text: Erysipelotrichaceae bacterium 2_2_44A

text: Erysipelotrichaceae bacterium 2_2_44A


text: public

text: Bacillus sp. (in: Bacteria)

text: Bacillus sp. (in: Bacteria)


text: public

text: Blautia obeum

text: Blautia obeum


text: public

text: [Ruminococcus] lactaris CC59_002D

text: [Ruminococcus] lactaris CC59_002D


text: public

text: Bacteroides salyersiae

text: Bacteroides salyersiae


text: public

text: Alistipes finegoldii

text: Alistipes finegoldii


text: public

text: Alistipes shahii

text: Alistipes shahii


text: public

text: Sutterella wadsworthensis

text: Sutterella wadsworthensis


text: public

text: Enterococcus hirae

text: Enterococcus hirae


text: public

text: Streptococcus parasanguinis

text: Streptococcus parasanguinis


text: public

text: Klebsiella sp. Q11

text: Klebsiella sp. Q11


text: public

text: Pediococcus acidilactici

text: Pediococcus acidilactici


text: public

text: Dorea formicigenerans ATCC 27755

text: Dorea formicigenerans ATCC 27755


text: public

text: Clostridium sp. A254.MGS-251

text: Clostridium sp. A254.MGS-251


text: public

text: [Clostridium] indolis DSM 755

text: [Clostridium] indolis DSM 755


text: public

text: Bacteroides sp. HPS0048

text: Bacteroides sp. HPS0048


text: public

text: Bacteroides stercoris

text: Bacteroides stercoris


text: public

text: Bacteroides clarus YIT 12056

text: Bacteroides clarus YIT 12056


text: public

text: Bifidobacterium breve

text: Bifidobacterium breve


text: public

text: Barnesiella intestinihominis YIT 11860

text: Barnesiella intestinihominis YIT 11860


text: public

text: Bifidobacterium bifidum JCM 1254

text: Bifidobacterium bifidum JCM 1254


text: public

text: Parabacteroides merdae CL09T00C40

text: Parabacteroides merdae CL09T00C40


text: public

text: Clostridium sp. 14505

text: Clostridium sp. 14505


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum


text: public

text: Bacteroides caccae

text: Bacteroides caccae


text: public

text: bacterium NLAE-zl-H412

text: bacterium NLAE-zl-H412


text: public

text: Blautia massiliensis

text: Blautia massiliensis


text: public

text: Anaerostipes hadrus

text: Anaerostipes hadrus


text: public

text: Faecalibacterium prausnitzii

text: Faecalibacterium prausnitzii


text: public

text: Bacteroides xylanisolvens SD CC 1b

text: Bacteroides xylanisolvens SD CC 1b


text: public

text: Parabacteroides distasonis

text: Parabacteroides distasonis


text: public

text: Bacteroides cellulosilyticus CL02T12C19

text: Bacteroides cellulosilyticus CL02T12C19


text: public

text: Bifidobacterium longum

text: Bifidobacterium longum


text: public

text: Fusobacterium mortiferum ATCC 9817

text: Fusobacterium mortiferum ATCC 9817


text: public

text: Enterococcus hirae

text: Enterococcus hirae


text: public

text: Streptococcus parasanguinis

text: Streptococcus parasanguinis


text: public

text: Fusobacterium nucleatum subsp. animalis 21_1A


text: public

text: Fusobacterium varium

text: Fusobacterium varium


text: public

text: Bacteroides kribbi

text: Bacteroides kribbi


text: public

text: Fusobacterium perfoetens ATCC 29250

text: Fusobacterium perfoetens ATCC 29250


text: public

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum


text: public

text: Eubacterium limosum

text: Eubacterium limosum


text: public

text: Ligilactobacillus ruminis S23

text: Ligilactobacillus ruminis S23


text: public

text: Phocaeicola vulgatus

text: Phocaeicola vulgatus


text: public

text: Streptococcus equinus

text: Streptococcus equinus


text: public

text: Phocaeicola vulgatus CL09T03C04

text: Phocaeicola vulgatus CL09T03C04


text: public

text: Bacteroides uniformis CL03T00C23

text: Bacteroides uniformis CL03T00C23


text: public

text: Clostridium perfringens

text: Clostridium perfringens


text: public

text: Enterococcus avium

text: Enterococcus avium


text: public

text: bacterium spbL1type3-1

text: bacterium spbL1type3-1


text: public

text: Enterococcus durans

text: Enterococcus durans


text: public

text: Enterococcus faecium

text: Enterococcus faecium


text: public

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron


text: public

text: Collinsella aerofaciens ATCC 25986

text: Collinsella aerofaciens ATCC 25986


text: public

text: Coprococcus comes

text: Coprococcus comes


text: public

text: Ruminococcus sp. Marseille-P328

text: Ruminococcus sp. Marseille-P328


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Parabacteroides sp. 20_3

text: Parabacteroides sp. 20_3


text: public

text: Erysipelotrichaceae bacterium

text: Erysipelotrichaceae bacterium


text: public

text: Bifidobacterium breve

text: Bifidobacterium breve


text: public

text: Anaerostipes hadrus

text: Anaerostipes hadrus


text: public

text: bacterium NLAE-zl-H437

text: bacterium NLAE-zl-H437


text: public

text: Bacteroides ovatus CL03T12C18

text: Bacteroides ovatus CL03T12C18


text: public

text: Coprococcus sp. HPP0074

text: Coprococcus sp. HPP0074


text: public

text: [Ruminococcus] torques

text: [Ruminococcus] torques


text: public

text: Streptococcus parasanguinis CC87K

text: Streptococcus parasanguinis CC87K


text: public

text: Coprobacillus cateniformis JCM 10604

text: Coprobacillus cateniformis JCM 10604


text: public

text: Collinsella aerofaciens

text: Collinsella aerofaciens


text: public

text: Collinsella bouchesdurhonensis

text: Collinsella bouchesdurhonensis


text: public

text: Prevotella sp. Marseille-P4119

text: Prevotella sp. Marseille-P4119


text: public

text: [Clostridium] innocuum

text: [Clostridium] innocuum


text: public

text: Blautia coccoides

text: Blautia coccoides


text: public

text: Fusicatenibacter saccharivorans

text: Fusicatenibacter saccharivorans


text: public

text: bacterium NLAE-zl-H72

text: bacterium NLAE-zl-H72


text: public

text: Beduini massiliensis

text: Beduini massiliensis


text: public

text: Bacteroides acidifaciens

text: Bacteroides acidifaciens


text: public

text: Clostridium sp. M62/1

text: Clostridium sp. M62/1


text: public

text: Lachnospiraceae bacterium 6_1_63FAA

text: Lachnospiraceae bacterium 6_1_63FAA


text: public

text: [Ruminococcus] gnavus CC55_001C

text: [Ruminococcus] gnavus CC55_001C


text: public

text: Bacteroides fragilis CL03T12C07

text: Bacteroides fragilis CL03T12C07


text: public

text: Bifidobacterium longum

text: Bifidobacterium longum


text: public

text: Streptococcus oralis

text: Streptococcus oralis


text: public

text: Phocaeicola vulgatus ATCC 8482

text: Phocaeicola vulgatus ATCC 8482


text: public

text: Bacteroides caccae

text: Bacteroides caccae


text: public

text: Phocaeicola vulgatus

text: Phocaeicola vulgatus


text: public

text: Bacteroides uniformis CL03T00C23

text: Bacteroides uniformis CL03T00C23


text: public

text: Bifidobacterium bifidum JCM 1254

text: Bifidobacterium bifidum JCM 1254


text: public

text: Phocaeicola plebeius DSM 17135

text: Phocaeicola plebeius DSM 17135


text: public

text: Necropsobacter rosorum

text: Necropsobacter rosorum


text: public

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron


text: public

text: Bacteroides finegoldii

text: Bacteroides finegoldii


text: public

text: Coprococcus eutactus

text: Coprococcus eutactus


text: public

text: Bacteroidia bacterium UC5.1-2G11

text: Bacteroidia bacterium UC5.1-2G11


text: public

text: Bacteroides fragilis

text: Bacteroides fragilis


text: public

text: Clostridium sp. AUH-JLR23

text: Clostridium sp. AUH-JLR23


text: public

text: Lachnoclostridium sp. Marseille-P6806

text: Lachnoclostridium sp. Marseille-P6806


text: public

text: Fusobacterium perfoetens ATCC 29250

text: Fusobacterium perfoetens ATCC 29250


text: public

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum


text: public

text: Bacteroides xylanisolvens CL03T12C04

text: Bacteroides xylanisolvens CL03T12C04


text: public

text: Gemella morbillorum

text: Gemella morbillorum


text: public

text: Dorea formicigenerans ATCC 27755

text: Dorea formicigenerans ATCC 27755


text: public

text: Lachnoclostridium edouardi

text: Lachnoclostridium edouardi


text: public

text: Bacteroides cellulosilyticus

text: Bacteroides cellulosilyticus


text: public

text: Streptococcus equinus

text: Streptococcus equinus


text: public

text: Clostridium perfringens

text: Clostridium perfringens


text: public

text: Parabacteroides distasonis

text: Parabacteroides distasonis


text: public

text: bacterium NLAE-zl-P10

text: bacterium NLAE-zl-P10


text: public

text: Streptococcus lutetiensis

text: Streptococcus lutetiensis


text: public

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus


text: public

text: Bacteroides ovatus

text: Bacteroides ovatus


text: public

text: Clostridium sp. HGF2

text: Clostridium sp. HGF2


text: public

text: Bacteroides caccae

text: Bacteroides caccae


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Ruminococcus bicirculans

text: Ruminococcus bicirculans


text: public

text: [Clostridium] spiroforme DSM 1552

text: [Clostridium] spiroforme DSM 1552


text: public

text: Barnesiella intestinihominis

text: Barnesiella intestinihominis


text: public

text: Bacteroides eggerthii 1_2_48FAA

text: Bacteroides eggerthii 1_2_48FAA


text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Alistipes finegoldii DSM 17242

text: Alistipes finegoldii DSM 17242


text: public

text: Bacteroides uniformis

text: Bacteroides uniformis


text: public

text: Bacteroides fragilis str. 3397 N3

text: Bacteroides fragilis str. 3397 N3


text: public

text: Bacteroides fragilis

text: Bacteroides fragilis


text: public

text: Bacteroides sp. HPS0048

text: Bacteroides sp. HPS0048


text: public

text: Clostridia bacterium UC5.1-1F8

text: Clostridia bacterium UC5.1-1F8


text: public

text: Dielma fastidiosa

text: Dielma fastidiosa


text: public

text: Klebsiella oxytoca MGH 42

text: Klebsiella oxytoca MGH 42


text: public

text: Klebsiella variicola

text: Klebsiella variicola


text: public

text: bacterium CSR-63

text: bacterium CSR-63


text: public

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus


text: public

text: Barnesiella viscericola DSM 18177

text: Barnesiella viscericola DSM 18177


text: public

text: Holdemania massiliensis AP2

text: Holdemania massiliensis AP2


text: public

text: [Clostridium] innocuum

text: [Clostridium] innocuum


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Phocaeicola dorei CL02T00C15

text: Phocaeicola dorei CL02T00C15


text: public

text: Bacteroides xylanisolvens SD CC 1b

text: Bacteroides xylanisolvens SD CC 1b


text: public

text: Bacteroides nordii WAL 11050 = JCM 12987


text: public

text: Ruminococcus sp. Marseille-P328

text: Ruminococcus sp. Marseille-P328


text: public

text: Clostridiaceae bacterium DJF_LS40

text: Clostridiaceae bacterium DJF_LS40


text: public

text: Eubacterium sp. 3_1_31

text: Eubacterium sp. 3_1_31


text: public

text: Anaerostipes hadrus

text: Anaerostipes hadrus


text: public

text: Anaerobutyricum hallii

text: Anaerobutyricum hallii


text: public

text: Clostridiales bacterium VE202-16

text: Clostridiales bacterium VE202-16


text: public

text: Parabacteroides johnsonii CL02T12C29

text: Parabacteroides johnsonii CL02T12C29


text: public

text: Bacteroides stercoris

text: Bacteroides stercoris


text: public

text: Parasutterella excrementihominis YIT 11859


text: public

text: Coprobacillus sp. 8_2_54BFAA

text: Coprobacillus sp. 8_2_54BFAA


text: public

text: bacterium NLAE-zl-P430

text: bacterium NLAE-zl-P430


text: public

text: Bacteroides ovatus

text: Bacteroides ovatus


text: public

text: Clostridiales bacterium VE202-01

text: Clostridiales bacterium VE202-01


text: public

text: Citrobacter amalonaticus

text: Citrobacter amalonaticus


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Bacteroides uniformis

text: Bacteroides uniformis


text: public

text: Bacteroides fragilis

text: Bacteroides fragilis


text: public

text: Enterococcus avium

text: Enterococcus avium


text: public

text: Phocaeicola vulgatus

text: Phocaeicola vulgatus


text: public

text: Streptococcus lutetiensis

text: Streptococcus lutetiensis


text: public

text: Anaerostipes hadrus

text: Anaerostipes hadrus


text: public

text: butyrate-producing bacterium A2-232

text: butyrate-producing bacterium A2-232


text: public

text: Bifidobacterium bifidum JCM 1254

text: Bifidobacterium bifidum JCM 1254


text: public

text: [Ruminococcus] torques

text: [Ruminococcus] torques


text: public

text: Sutterella wadsworthensis

text: Sutterella wadsworthensis


text: public

text: Alistipes sp. DJF_B185

text: Alistipes sp. DJF_B185


text: public

text: Bacteroides faecis MAJ27

text: Bacteroides faecis MAJ27


text: public

text: Bacteroides kribbi

text: Bacteroides kribbi


text: public

text: Parabacteroides sp. D26

text: Parabacteroides sp. D26


text: public

text: Flavonifractor plautii

text: Flavonifractor plautii


text: public

text: Bacteroides finegoldii

text: Bacteroides finegoldii


text: public

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Enterococcus faecalis

text: Enterococcus faecalis


text: public

text: [Ruminococcus] gnavus CC55_001C

text: [Ruminococcus] gnavus CC55_001C


text: public

text: Clostridium butyricum E4 str. BoNT E BL5262


text: public

text: Bifidobacterium longum

text: Bifidobacterium longum


text: public

text: Coprobacillus sp. 8_2_54BFAA

text: Coprobacillus sp. 8_2_54BFAA


text: public

text: Peptostreptococcus anaerobius

text: Peptostreptococcus anaerobius


text: public

text: Bacteroides cellulosilyticus CL02T12C19

text: Bacteroides cellulosilyticus CL02T12C19


text: public

text: butyrate-producing bacterium A2-207

text: butyrate-producing bacterium A2-207


text: public

text: Eubacterium sp. UNK.MGS-26

text: Eubacterium sp. UNK.MGS-26


text: public

text: Fusobacterium mortiferum ATCC 9817

text: Fusobacterium mortiferum ATCC 9817


text: public

text: Eubacterium ramulus

text: Eubacterium ramulus


text: public

text: Prevotella copri

text: Prevotella copri


text: public

text: Fournierella massiliensis

text: Fournierella massiliensis


text: public

text: Phocaeicola vulgatus ATCC 8482

text: Phocaeicola vulgatus ATCC 8482


text: public

text: Raoultella planticola

text: Raoultella planticola


text: public

text: Clostridia bacterium UC5.1-1D4

text: Clostridia bacterium UC5.1-1D4


text: public

text: Agathobaculum sp. Marseille-P7918

text: Agathobaculum sp. Marseille-P7918


text: public

text: Escherichia coli

text: Escherichia coli


text: public

text: Bacteroides stercoris ATCC 43183

text: Bacteroides stercoris ATCC 43183


text: public

text: Parabacteroides merdae CL03T12C32

text: Parabacteroides merdae CL03T12C32


text: public

text: Bacteroides fragilis

text: Bacteroides fragilis


text: public

text: Holdemanella biformis DSM 3989

text: Holdemanella biformis DSM 3989


text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: public

text: Bacteroides eggerthii DSM 20697

text: Bacteroides eggerthii DSM 20697


text: public

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron


text: public

text: Bacteroides cellulosilyticus

text: Bacteroides cellulosilyticus


text: public

text: Bacteroides sp. AR20

text: Bacteroides sp. AR20


text: public

text: Streptococcus lutetiensis

text: Streptococcus lutetiensis


text: public

text: Clostridium perfringens

text: Clostridium perfringens


text: public

text: Enterococcus hirae

text: Enterococcus hirae


text: public

text: Bacteroides uniformis

text: Bacteroides uniformis


text: public

text: Bacteroides koreensis

text: Bacteroides koreensis


text: public

text: Parabacteroides distasonis

text: Parabacteroides distasonis


text: public

text: Phocaeicola dorei CL02T00C15

text: Phocaeicola dorei CL02T00C15


text: public

text: Collinsella aerofaciens

text: Collinsella aerofaciens


E-MTAB-12167:Sample 1

text: LabMedMolGe

text: public

text: E-MTAB-12167:Sample 1

text: ArrayExpress

characteristic: broker name

text: Protocols: As described above, C. albicans cultures were grown with or without 10 mM NAM in Petri dishes of 90 mm diameter and incubated at 25°C. Three independent biological replicates were performed for either CTRL or CaNAM cells. After 28 h of incubation, a total of 109 yeast cells were harvested (8,000g, 10 min at 4°C) and washed with diethylpyrocarbonate (DEPC)-treated water. RNA isolation was performed as described by Vennapusa et al., 2020 with some modifications. Briefly, yeast cells were resuspended in 600 mL of RNA extraction buffer (100 mM Tris- HCl (pH: 8), 25 mM EDTA, PVP 2.5%, NaCl 2.5 M, 2.5 % β-Mercaptoethanol, 2% SDS) and disrupted mechanically with BeadBug microtube homogenizer (Benchmark Scientific, Sigma-Aldrich, Milan, Italy) by using acid-washed glass beads. Total RNA was isolated using an equal volume of Acid-Phenol/Chloroform, pH 4.5 with IAA, 125:24:1 (Sigma-Aldrich, Milan, Italy). Following centrifugation, the RNA was precipitated from the aqueous phase with 100% ethanol, washed twice with 75% ethanol, and dissolved in DEPC-water. RNA quantification was carried out with the instrument Nanodrop 200 Thermo Fisher Scientific (Monza, Italy), and its integrity was checked by electrophoresis on 1.5% agarose gel. For RNA sequencing, RNA quality was assessed with TapeStation (Agilent, Cernusco sul Naviglio, Italy), and only RNA with RIN > 8 was used for library production.

text: wild type genotype

characteristic: genotype

text: Candida albicans

text: Candida albicans

text: whole organism

characteristic: organism part

text: Candida albicans

text: Sample 1


E-MTAB-12167:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: LabMedMolGe

text: public

text: E-MTAB-12167:Sample 2

text: ArrayExpress

text: wild type genotype

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans

text: Sample 2


E-MTAB-12167:Sample 3

text: LabMedMolGe

text: public

characteristic: SRA accession

text: E-MTAB-12167:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans

text: Sample 3


E-MTAB-12167:Sample 4

text: LabMedMolGe

text: public

text: E-MTAB-12167:Sample 4

text: ArrayExpress

text: wild type genotype

text: Candida albicans

characteristic: organism

text: Candida albicans

text: whole organism

text: Candida albicans

text: Sample 4


E-MTAB-12167:Sample 5

text: LabMedMolGe

text: public

text: E-MTAB-12167:Sample 5

text: ArrayExpress

text: wild type genotype

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans

text: Sample 5

characteristic: title


E-MTAB-12167:Sample 6

characteristic: ENA-LAST-UPDATE

text: LabMedMolGe

text: public

text: E-MTAB-12167:Sample 6

text: ArrayExpress

text: wild type genotype

text: Candida albicans

text: Candida albicans

text: whole organism

text: Candida albicans

text: Sample 6


E-MTAB-12164:Ms IgG

characteristic: External Id

text: St. John's Medical College Hospital

text: public

text: E-MTAB-12164:Ms IgG

tag: Namespace:St. John's Medical College Hospital

text: ArrayExpress

text: SiHa

text: human

text: Protocols: Sample used was SiHa cells. The cells were grown in a CO2 incubator in DMEM supplemented with 10%FBS. ChIP was performed using the Simple ChIP Enzymatic Chromatin IP Kit (CST 9003S) as per the manufacturer’s protocol. Briefly, proteins were crosslinked to the DNA by adding PFA to the media at a final concentration of 4% (w/v). Excess PFA was quenched using glycine. The media was removed and the cells were washed twice with cold 1XPBS and collected in 2ml of ice cold 1XPBS by scraping. The DNA from these cells was fragmented using both micrococcal nuclease and sonication. The cross-linked chromatin samples were treated with RNase A and DNA was purified using the column method. The DNA was then quantified and equal amounts of DNA was incubated with magnetic beads and the desired antibody overnight at 4°C. The beads were then washed thrice with high salt buffer and the DNA bound to the beads was collected using elution buffer and the cross-links reversed using sodium chloride and proteinase K. The pulled-down DNA was again purified using the column method and quantified using the DNA Qubit High sensitivity assay kit (Life technologies, Invitrogen). Libraries were prepared using NEB Next Ultra II DNA Library preparation kit. In brief, ChIP DNA was subjected to various enzymatic steps for repairing the ends and attaching the dA-tail, followed by ligation of adapter sequences. These adapter ligated fragments were then size selected using SPRI beads. Next, the size selected fragments were indexed during limited cycle PCR to generate final libraries for paired-end sequencing.

text: adult

characteristic: developmental stage

text: squamous cell carcinoma

characteristic: disease

text: RhoC overexpression

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: Homo sapiens

text: Ms IgG


E-MTAB-12164:Rb IgG

text: St. John's Medical College Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12164:Rb IgG

text: ArrayExpress

text: SiHa

text: human

text: adult

text: squamous cell carcinoma

text: RhoC overexpression

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: Homo sapiens

text: Rb IgG