E-MTAB-12044:Sample 46

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 46

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 46


E-MTAB-12044:Sample 47

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 47

tag: Namespace:Wageningen University and Research

unit: day

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: Protocols: Upon inoculation with M. incognita, the locations of the root-tips in the infected and uninfected plants were marked on the plates. At the moment of collection (1, 2, 3, 4, 7, and 10 days post inoculation) this allowed for harvesting similar tissue in the mock-infected plants when compared to the infected plants. Approximately 50-90 galls per genotype per timepoint were dissected and kept in liquid nitrogen / -80°C storage until the moment RNA was isolated. Tomato, Solanum lycopersicum (accessions RF004, RF005, RF008, RF022, RF023, RF029, RF032, RF036, RF041, and RF096) seeds were incubated for three days in tap water at 4°C in the dark. Seeds were sterilized by washing with 70% (v/v) ethanol and subsequently with bleach 2.5% (v/v). Then, seeds were washed in sterile tap water and transferred to plates with MS20 medium and kept at 24°C in 16h light/8h dark. Seedlings were transferred to a fresh MS20 plate, one plant per plate. Infection was done with 10-days old seedlings. After addition of 120 J2s, plates were kept in the dark for two days to allow infection. Thereafter plates were again kept in a 16h light/8h dark regime. RNA was using a Maxwell® 16 AS2000 instrument with a Maxwell® 16 LEV Plant RNA Kit (both Promega Corporation, Madison, WI, USA) following the manufacturer’s instructions. RNA samples were stored at -80 ℃ until further use. After the total RNA extraction and DNase I treatment, magnetic beads with Oligo (dT) are used to isolate mRNA. Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. The suitable fragments are size-selected for the PCR amplification as templates.

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 47

characteristic: title


E-MTAB-12044:Sample 48

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 48

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 48


E-MTAB-12044:Sample 49

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 49

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 49


E-MTAB-12044:Sample 5

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 5

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 5


E-MTAB-12044:Sample 50

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 50

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 50

characteristic: title


E-MTAB-12044:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-12044:Sample 51

text: ArrayExpress

text: tomato

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 51


E-MTAB-12044:Sample 52

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 52

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 52


E-MTAB-12044:Sample 53

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 53

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 53


E-MTAB-12044:Sample 54

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 54

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 54

characteristic: title


E-MTAB-12044:Sample 55

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 55

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 55


E-MTAB-12044:Sample 56

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 56

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 56


E-MTAB-12044:Sample 57

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 57

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 57


E-MTAB-12044:Sample 58

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 58

text: ArrayExpress

characteristic: broker name

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 58

characteristic: title


E-MTAB-12044:Sample 59

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 59

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 59


E-MTAB-12044:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 6

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 6


E-MTAB-12044:Sample 60

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 60

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 60


E-MTAB-12044:Sample 61

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 61

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 61

characteristic: title


E-MTAB-12044:Sample 62

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 62

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 62


E-MTAB-12044:Sample 63

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 63

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 63


E-MTAB-12044:Sample 64

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 64

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 64


E-MTAB-12044:Sample 65

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 65

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 65

characteristic: title


E-MTAB-12044:Sample 66

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 66

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 66


E-MTAB-12044:Sample 67

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 67

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 67


E-MTAB-12044:Sample 68

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 68

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 68


E-MTAB-12044:Sample 69

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 69

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 69

characteristic: title


E-MTAB-12044:Sample 7

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 7


E-MTAB-12044:Sample 70

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 70

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 70


E-MTAB-12044:Sample 71

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 71

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 71


E-MTAB-12044:Sample 72

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 72

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 72

characteristic: title


E-MTAB-12044:Sample 73

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 73

text: ArrayExpress

text: tomato

characteristic: common name

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 73


E-MTAB-12044:Sample 74

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 74

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 74


E-MTAB-12044:Sample 75

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 75

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 75


E-MTAB-12044:Sample 76

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 76

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 76

characteristic: title


E-MTAB-12044:Sample 77

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 77

text: ArrayExpress

text: tomato

characteristic: common name

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 77


E-MTAB-12044:Sample 78

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 78

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 78


E-MTAB-12044:Sample 79

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 79

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 79


E-MTAB-12044:Sample 8

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 8

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 8

characteristic: title


E-MTAB-12044:Sample 80

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 80

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 80


E-MTAB-12044:Sample 81

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 81

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 81


E-MTAB-12044:Sample 82

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 82

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 82


E-MTAB-12044:Sample 83

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 83

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 83

characteristic: title


E-MTAB-12044:Sample 84

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 84

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 84


E-MTAB-12044:Sample 85

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 85

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 85


E-MTAB-12044:Sample 86

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 86

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 86


E-MTAB-12044:Sample 87

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 87

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 87

characteristic: title


E-MTAB-12044:Sample 88

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 88

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 88


E-MTAB-12044:Sample 89

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 89

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 89


E-MTAB-12044:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 9

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 9


E-MTAB-12044:Sample 90

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 90

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 90

characteristic: title


E-MTAB-12044:Sample 91

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 91

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 91


E-MTAB-12044:Sample 92

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 92

text: ArrayExpress

characteristic: broker name

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 92


E-MTAB-12044:Sample 93

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12044:Sample 93

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 93


E-MTAB-12044:Sample 94

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 94

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 94

characteristic: title


E-MTAB-12044:Sample 95

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 95

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 95


E-MTAB-12044:Sample 96

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12044:Sample 96

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 96


E-MTAB-12044:Sample 97

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 97

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 97


E-MTAB-12044:Sample 98

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 98

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 98

characteristic: title


E-MTAB-12044:Sample 99

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12044:Sample 99

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 99


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:The University of Texas MD Anderson Cancer Center Department of Lymphoma & Myeloma

characteristic: Submitter Id

text: ArrayExpress

text: T cell

text: human

text: Protocols: Tumor and T cells from splenic lymphocytes from ten HCLc patients were purified using FACS. Splenocytes were stained with CD3-PE (clone: UCHT1, Biolegend), 20 μg/ml CD11c-FITC (clone: Bu15, Biolegend), 5 μg/ml CD103-PE/Cy7 (clone: Ber-ACT8, Biolegend), and 2.5 μg/ml CD19-APC (clone: HIB19, Biolegend). Tumor cells were isolated based on the co-expression of CD19, CD11c and CD103; and T cells based on CD3 expression. Data was analyzed using FACS Diva (BD) and FlowJo (TreeStar). Genomic DNA from purified cell populations were extracted using QIAamp DNA mini kit (Qiagen, Manchester, UK), according to the manufacturer’s instructions. DNA from tumor and T cells were used for library preparation using NEBNext UltraTM DNA Library Prep kit (New England Biolabs, Hitchin, UK), according to manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: hairy cell leukemia

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: spleen

text: normal tissue adjacent to neoplasm

characteristic: sampling site

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The University of Texas MD Anderson Cancer Center Department of Lymphoma & Myeloma

text: public

text: ArrayExpress

characteristic: broker name

text: T cell

text: human

characteristic: common name

text: adult

text: hairy cell leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: spleen

text: normal tissue adjacent to neoplasm

text: Homo sapiens


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: T cell

text: human

text: adult

text: hairy cell leukemia

text: Homo sapiens

text: Homo sapiens

text: spleen

characteristic: organism part

text: neoplasm

text: Homo sapiens

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of Biosciences, University of Milan and INGM (Istituto Nazionale di Genetica Molecolare), Milan, Italy

characteristic: Submitter Id

text: ArrayExpress

text: striatum neuron

text: human

text: Protocols: At day 15 and day 25 of differentiation, cells were dissociated using Accutase for 5 minutes and filtered through a 20μm cell strainer (Sysmex) to remove cell clumps. Single cell suspensions were counted and adjusted to 1.000-1.200 cells/µl in PBS containing 0.04% Bovine Serum Albumin. 5.000 cells per sample and for each time point were collected for generating Single Cell 3’ Gene Expression libraries. Human ES H9 cell line (WiCell) was cultured on CultrexTM (120-180 μg/mL, Trevigen) -coated dishes in complete mTeSRTM1 medium (STEMCELL TM Technologies) and maintained for a maximum of three months. Medium was changed daily, and cells were dissociated twice a week with PBS (Euroclone) plus 0.5 mM EDTA for passaging or Accutase (Millipore) for 2D striatal differentiation. For neural induction, H9 hESCs cells were plated at a density of 1,1x104 cells/cm2 on CultrexTM- coated plates (120-180 μg/mL) in complete mTeSRTM1 medium supplemented with 10uM ROCK inhibitor (Y-27632, provided by CHDI FOUNDATION). After two days of expansion, cells were exposed to Dual-SMAD inhibition using 10uM SB431542 (provided by CHDI FOUNDATION) and 500nM LDN193189 (provided by CHDI FOUNDATION) in DMEM-F12 (Life Technologies) plus N-2 Supplement (Life Technologies) and B-27 Supplement without Retinoic Acid (Life Technologies) for 12 days. Starting on Day 5, 200 ng/mL Recombinant human SHH C-25 II (R&D SYSTEM) and 100 ng/mL DKK-1 (PrepoTech) were added to the culture and maintained until Day 25. On Day 21 the entire cell population was detached upon Accutase single cell dissociation and replated at a cell density of 2.2x104 cells/cm2 either on Poly-D-Lysin (33 μg/mL, Sigma-Aldrich) and Laminin (3μg/mL, Life Technologies) or Biolaminin 521 (5 μg/mL, Voden) coated plates for continued culture. The cells were maintained, in DMEM-F12 plus N-2 Supplement, B-27 Supplement with retinoic acid (Life Technologies), and 20 ng/mL BDNF (PrepoTech,), until the end of differentiation. GEM generation, reverse transcription, cDNA amplification, and library construction steps were performed according to manufacturer’s instructions using the Chromium Single Cell 3′ v2/v3 platform (10X Genomics) GEM generation, reverse transcription, cDNA amplification, and library construction steps were performed according to manufacturer’s instructions using the Chromium Single Cell 3′ v2/v3 platform (10X Genomics)

characteristic: description

text: embryo stage

text: normal

text: striatal differentiation

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Biosciences, University of Milan and INGM (Istituto Nazionale di Genetica Molecolare), Milan, Italy

text: public

text: ArrayExpress

text: striatum neuron

text: human

text: embryo stage

characteristic: developmental stage

text: normal

characteristic: disease

text: striatal differentiation

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: embryonic stem cell

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TROMSO

text: public

tag: Namespace:UNIVERSITY OF TROMSO

text: Outbreak

text: Norway

characteristic: geographic location (country and/or sea)

text: Salkfjellvik

characteristic: geographic location (region and locality)

text: Salmo salar

characteristic: host scientific name

text: Outbreak

text: Aliivibrio wodanis

characteristic: organism

text: Aliivibrio wodanis


characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Outbreak

text: Norway

text: Straumen

text: Salmo salar

text: Outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Experiment with outbreak

text: Norway

text: Solbergstrand

text: Salmo salar

text: Experiment with outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF TROMSO

text: public

text: Skin ulcer

characteristic: description

text: Norway

text: Husfjorden

text: Salmo salar

text: Skin ulcer

text: Aliivibrio wodanis

text: Aliivibrio wodanis


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

text: public

text: Ulcer

text: Norway

text: Husfjorden

text: Salmo salar

text: Ulcer

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Outbreak

text: Norway

text: Halsanaustan

text: Salmo salar

text: Outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Outbreak

text: Norway

text: Bogen

text: Salmo salar

text: Outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Host

text: Norway

text: VESO Vikan

text: Gadus morhua

text: Host

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Outbreak

text: Norway

text: Buksevika

text: Salmo salar

text: Outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Host

text: Norway

text: Knivskjeneset

text: Oncorhynchus mykiss

text: Host

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Outbreak

text: Norway

text: Husfjorden

text: Salmo salar

text: Outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Vaccination experiments

text: Norway

text: Svanøybukt

text: Salmo salar

text: Vaccination experiments

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: UNIVERSITY OF TROMSO

text: public

text: Outbreak

text: Norway

text: Svanøybukt

text: Salmo salar

text: Outbreak

text: Aliivibrio wodanis

text: Aliivibrio wodanis


text: tbd

characteristic: Citation

unit: m

characteristic: Depth

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

text: tbd

characteristic: Further Details

text: Institut de Ciencies del Mar ICM-CSIC

text: public

characteristic: Last Update Date

unit: DD

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: [IO] Indian Ocean (MRGID:1904)

characteristic: Marine Region

unit: µmol/kg

characteristic: Oxygen Sensor

characteristic: Protocol Label

unit: practical salinity unit

characteristic: Salinity Sensor

characteristic: Sample Collection Device

text: This version can be used to provide data discovery services

characteristic: Sample Status

characteristic: Sampling Campaign

text: R/V Hesperides

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

tag: Namespace:Institut de Ciencies del Mar ICM-CSIC

unit: ºC

characteristic: Temperature

text: Trades Biome

characteristic: broad-scale environmental context

text: This sample (MH065A049113DA0882) was collected at station MH_049 during campaign MH_20110213Z00, using a profile-rosette-ctd-water-sampler-(Niskin). The sampling event occurred at position latitudeN=-33.9073629 and longitudeE=37.0424031, on date/time=2011-02-17T01:58Z, at a depth of 1200 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a discrete depth within the [BATHY] bathypelagic zone, coinciding with a [SMinZ] salinity minimum layer. The sample material was size-fractionated (0.22-3um), packaged in a 2-mL cryotube, with no addition of chemical, flash frozen in liquid nitrogen and stored in a freezer at -80 degrees Celsius, labelled MP0882, and sent to the Institut de Ciencies del Mar (CSIC), Barcelona, Spain. This sample may be used for metabarcoding (DNA/RNA amplicons), metagenomics and metatranscriptomics analyses of plankton, mainly prokaryotes.

text: particulate matter (ENVO:01000060), including planktonic material (ENVO:01000063)

characteristic: environmental medium

text: water

characteristic: environmental package

characteristic: local environmental context

text: marine metagenome

text: Malaspina Expedition 2010

characteristic: project name

text: marine metagenome

text: MH_20110217T0158Z_049_EVENT_profile-rosette-ctd-water-sampler-(Niskin)_bathypelagic_(1200m)_SEQ-(10L-or-15min-on-47mm)_W0.22-3_MH065A049113DA0882_MP0882


text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: Institut de Ciencies del Mar ICM-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: [IO] Indian Ocean (MRGID:1904)

characteristic: Marine Region

characteristic: SRA accession

text: R/V Hesperides

characteristic: Submitter Id

text: Trades Biome

text: This sample (MH065A049121DA0886) was collected at station MH_049 during campaign MH_20110213Z00, using a profile-rosette-ctd-water-sampler-(Niskin). The sampling event occurred at position latitudeN=-33.9073629 and longitudeE=37.0424031, on date/time=2011-02-17T01:58Z, at a depth of 450 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a discrete depth within the [MESO] mesopelagic zone, coinciding with a [DSL] deep scattering layer. The sample material was size-fractionated (0.22-3um), packaged in a 2-mL cryotube, with no addition of chemical, flash frozen in liquid nitrogen and stored in a freezer at -80 degrees Celsius, labelled MP0886, and sent to the Institut de Ciencies del Mar (CSIC), Barcelona, Spain. This sample may be used for metabarcoding (DNA/RNA amplicons), metagenomics and metatranscriptomics analyses of plankton, mainly prokaryotes.

characteristic: description

text: water

text: marine metagenome

characteristic: organism

text: Malaspina Expedition 2010

text: marine metagenome

text: MH_20110217T0158Z_049_EVENT_profile-rosette-ctd-water-sampler-(Niskin)_mesopelagic_(450m)_SEQ-(10L-or-15min-on-47mm)_W0.22-3_MH065A049121DA0886_MP0886

characteristic: title


text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

text: Institut de Ciencies del Mar ICM-CSIC

text: public

text: [SPO] South Pacific Ocean (MRGID:1910)

characteristic: Oxygen Sensor

characteristic: Protocol Label

characteristic: Salinity Sensor

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: R/V Hesperides

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Temperature

text: Westerlies Biome

characteristic: broad-scale environmental context

text: This sample (MH127A083102DA1519) was collected at station MH_083 during campaign MH_20110416Z00, using a profile-rosette-ctd-water-sampler-(Niskin). The sampling event occurred at position latitudeN=-23.3772387 and longitudeE=-178.2109567, on date/time=2011-04-20T15:33Z, at a depth of 2500 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a discrete depth within the [BATHY] bathypelagic zone, coinciding with a [DEEP] deepest water sampled. The sample material was size-fractionated (0.22-3um), packaged in a 2-mL cryotube, with no addition of chemical, flash frozen in liquid nitrogen and stored in a freezer at -80 degrees Celsius, labelled MP1519, and sent to the Institut de Ciencies del Mar (CSIC), Barcelona, Spain. This sample may be used for metabarcoding (DNA/RNA amplicons), metagenomics and metatranscriptomics analyses of plankton, mainly prokaryotes.

characteristic: environmental medium

text: water

characteristic: environmental package

characteristic: local environmental context

text: marine metagenome

text: Malaspina Expedition 2010

characteristic: project name

text: marine metagenome

text: MH_20110420T1533Z_083_EVENT_profile-rosette-ctd-water-sampler-(Niskin)_bathypelagic_(2500m)_SEQ-(10L-or-15min-on-47mm)_W0.22-3_MH127A083102DA1519_MP1519


text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

characteristic: Further Details

text: Institut de Ciencies del Mar ICM-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Last Update Date

characteristic: Latitude End

characteristic: Latitude Start

characteristic: Longitude End

characteristic: Longitude Start

text: [SPO] South Pacific Ocean (MRGID:1910)

characteristic: Marine Region

characteristic: SRA accession

text: R/V Hesperides

characteristic: Submitter Id

text: Westerlies Biome

text: This sample (MH127A083121DA1527) was collected at station MH_083 during campaign MH_20110416Z00, using a profile-rosette-ctd-water-sampler-(Niskin). The sampling event occurred at position latitudeN=-23.3772387 and longitudeE=-178.2109567, on date/time=2011-04-20T15:33Z, at a depth of 200 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a discrete depth within the [MESO] mesopelagic zone, coinciding with a [OMinZ] oxygen Minimum zone. The sample material was size-fractionated (0.22-3um), packaged in a 2-mL cryotube, with no addition of chemical, flash frozen in liquid nitrogen and stored in a freezer at -80 degrees Celsius, labelled MP1527, and sent to the Institut de Ciencies del Mar (CSIC), Barcelona, Spain. This sample may be used for metabarcoding (DNA/RNA amplicons), metagenomics and metatranscriptomics analyses of plankton, mainly prokaryotes.

characteristic: description

text: water

text: marine metagenome

characteristic: organism

text: Malaspina Expedition 2010

text: marine metagenome

text: MH_20110420T1533Z_083_EVENT_profile-rosette-ctd-water-sampler-(Niskin)_mesopelagic_(200m)_SEQ-(10L-or-15min-on-47mm)_W0.22-3_MH127A083121DA1527_MP1527

characteristic: title


text: tbd

characteristic: Citation

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: Event Date/Time Start

characteristic: Event Label

characteristic: External Id

text: tbd

text: Institut de Ciencies del Mar ICM-CSIC

text: public

text: [NAO] North Atlantic Ocean (MRGID:1912)

characteristic: Oxygen Sensor

characteristic: Protocol Label

characteristic: Salinity Sensor

characteristic: Sample Collection Device

characteristic: Sample Status

characteristic: Sampling Campaign

text: R/V Hesperides

characteristic: Sampling Platform

characteristic: Sampling Station

characteristic: Size Fraction Lower Threshold

characteristic: Size Fraction Upper Threshold

characteristic: Temperature

text: Trades Biome

characteristic: broad-scale environmental context

text: This sample (MH197A135111DA2654) was collected at station MH_135 during campaign MH_20110620Z00, using a profile-rosette-ctd-water-sampler-(Niskin). The sampling event occurred at position latitudeN=20.8041111 and longitudeE=-50.1432562, on date/time=2011-06-29T06:17Z, at a depth of 1500 m. The sample material was collected in the marine biome (ENVO:00000447) targeting a discrete depth within the [BATHY] bathypelagic zone, coinciding with a [SMaxZ] salinity maximum layer. The sample material was size-fractionated (0.22-3um), packaged in a 2-mL cryotube, with no addition of chemical, flash frozen in liquid nitrogen and stored in a freezer at -80 degrees Celsius, labelled MP2654, and sent to the Institut de Ciencies del Mar (CSIC), Barcelona, Spain. This sample may be used for metabarcoding (DNA/RNA amplicons), metagenomics and metatranscriptomics analyses of plankton, mainly prokaryotes.

characteristic: environmental medium

text: water

characteristic: environmental package

characteristic: local environmental context

text: marine metagenome

text: Malaspina Expedition 2010

characteristic: project name

text: marine metagenome

text: MH_20110629T0617Z_135_EVENT_profile-rosette-ctd-water-sampler-(Niskin)_bathypelagic_(1500m)_SEQ-(10L-or-15min-on-47mm)_W0.22-3_MH197A135111DA2654_MP2654


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Evolutionary Anthropology

characteristic: Submitter Id

text: dental plaque collected on gauze

characteristic: description

text: Cameroon

characteristic: geographic location (country and/or sea)

text: Haut-Nyong, Messok/Lomie

characteristic: geographic location (region and locality)

text: human oral metagenome

characteristic: organism

text: human oral metagenome

characteristic: title


Rabacal-1 (22005) DNA

text: public

text: Rabacal-1 (22005) DNA

tag: Namespace:Max Planck Institute for Biology Tuebingen

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession Rabacal-1 (ecotype ID 22005)

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeds were germinated on soil and stratified in darkness at 4C for six days, after which they were transferred to long day conditions (16 h light) at 23C and 65% relative humidity under 110-140 umol m-2 s-1 light provided by Philips GreenPower TLED modules (Philips Lighting GmbH, Hamburg, Germany). To reduce starch accumulation, plants were placed into darkness for 24 h before harvesting.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: Rabacal-1 (22005) DNA


ANGE-B-10 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Biology Tuebingen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ANGE-B-10 DNA

characteristic: Submitter Id

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession ANGE-B-10

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: ANGE-B-10 DNA


ANGE-B-2 DNA

text: public

text: ANGE-B-2 DNA

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession ANGE-B-2

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: ANGE-B-2 DNA

characteristic: title


AUZE-A-5 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: AUZE-A-5 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession AUZE-A-5

text: France

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: AUZE-A-5 DNA


BANI-C-1 DNA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BANI-C-1 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession BANI-C-1

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: BANI-C-1 DNA


BANI-C-12 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BANI-C-12 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession BANI-C-12

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: BANI-C-12 DNA

characteristic: title


BARA-C-3 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BARA-C-3 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession BARA-C-3

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: BARA-C-3 DNA


BARA-C-5 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BARA-C-5 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession BARA-C-5

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: BARA-C-5 DNA


BARC-A-12 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BARC-A-12 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession BARC-A-12

characteristic: description

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: BARC-A-12 DNA

characteristic: title


BARC-A-17 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BARC-A-17 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession BARC-A-17

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: BARC-A-17 DNA


BELC-C-10 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BELC-C-10 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession BELC-C-10

characteristic: description

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: BELC-C-10 DNA


BELC-C-12 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BELC-C-12 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession BELC-C-12

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: BELC-C-12 DNA

characteristic: title


BROU-A-10 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BROU-A-10 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession BROU-A-10

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: BROU-A-10 DNA


CAMA-C-2 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CAMA-C-2 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession CAMA-C-2

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: CAMA-C-2 DNA


CAMA-C-9 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CAMA-C-9 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession CAMA-C-9

characteristic: description

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: CAMA-C-9 DNA

characteristic: title


FERR-A-12 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: FERR-A-12 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession FERR-A-12

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: FERR-A-12 DNA


FERR-A-8 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: FERR-A-8 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession FERR-A-8

characteristic: description

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeds were germinated on soil and stratified in darkness at 4C for six days, after which they were transferred to long day conditions (16 h light) at 23C and 65% relative humidity under 110-140 umol m-2 s-1 light provided by Philips GreenPower TLED modules (Philips Lighting GmbH, Hamburg, Germany). To reduce starch accumulation, plants were placed into darkness for 24 h before harvesting.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: FERR-A-8 DNA


GAIL-B-11 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Biology Tuebingen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GAIL-B-11 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession GAIL-B-11

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: GAIL-B-11 DNA

characteristic: title


LACR-C-14 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LACR-C-14 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession LACR-C-14

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: LACR-C-14 DNA


MERE-A-13 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MERE-A-13 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession MERE-A-13

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: MERE-A-13 DNA


MONTM-B-16 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MONTM-B-16 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession MONTM-B-16

characteristic: description

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: MONTM-B-16 DNA

characteristic: title


MONTM-B-7 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MONTM-B-7 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession MONTM-B-7

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: MONTM-B-7 DNA


PREI-A-14 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PREI-A-14 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession PREI-A-14

characteristic: description

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: PREI-A-14 DNA


SALE-A-10 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SALE-A-10 DNA

text: thale cress

text: Rosettes from multiple 21-days-old individuals of accession SALE-A-10

text: France

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: SALE-A-10 DNA

characteristic: title


SALE-A-17 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SALE-A-17 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosettes from multiple 21-days-old individuals of accession SALE-A-17

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: SALE-A-17 DNA


Cvi-0 (6911) DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Cvi-0 (6911) DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession Cvi-0 (ecotype ID 6911)

text: Cape Verde

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Cvi-0 (6911) DNA


Ler-0 (7213) DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ler-0 (7213) DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession Ler-0 (ecotype ID 7213)

characteristic: description

text: Poland

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: Ler-0 (7213) DNA

characteristic: title


Tanz-1 (10024) DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tanz-1 (10024) DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession Tanz-1 (ecotype ID 10024)

text: Tanzania

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: Tanz-1 (10024) DNA


IP-Alo-0 (9506) DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Alo-0 (9506) DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Alo-0 (ecotype ID 9506)

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Alo-0 (9506) DNA


IP-Cas-0 (9831) DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Cas-0 (9831) DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Cas-0 (ecotype ID 9831)

text: Spain

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Cas-0 (9831) DNA

characteristic: title


IP-Cat-0 (9832) DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Cat-0 (9832) DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Cat-0 (ecotype ID 9832)

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: IP-Cat-0 (9832) DNA


IP-Evs-0 (9845) DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Evs-0 (9845) DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Evs-0 (ecotype ID 9845)

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Evs-0 (9845) DNA


IP-Hom-4 (9546) DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Hom-4 (9546) DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Hom-4 (ecotype ID 9546)

characteristic: description

text: Spain

text: growth chamber

text: Seeds were germinated on soil and stratified in darkness at 4C for six days, after which they were transferred to long day conditions (16 h light) at 23C and 65% relative humidity under 110-140 umol m-2 s-1 light provided by Philips GreenPower TLED modules (Philips Lighting GmbH, Hamburg, Germany). To reduce starch accumulation, plants were placed into darkness for 24 h before harvesting.

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Hom-4 (9546) DNA

characteristic: title


IP-Hum-2 (9549) DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max Planck Institute for Biology Tuebingen

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Hum-2 (9549) DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Hum-2 (ecotype ID 9549)

text: Spain

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: IP-Hum-2 (9549) DNA


IP-Alo-19 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Alo-19 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Alo-19

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Alo-19 DNA


IP-Cas-6 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Cas-6 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Cas-6

text: Spain

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Cas-6 DNA

characteristic: title


IP-Evs-12 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Evs-12 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Evs-12

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: IP-Evs-12 DNA


IP-Hom-0 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Hom-0 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Hom-0

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Hom-0 DNA


IP-Hum-4 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Hum-4 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Hum-4

characteristic: description

text: Spain

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Hum-4 DNA

characteristic: title


IP-Lor-16 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Lor-16 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Lor-16

text: Spain

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: IP-Lor-16 DNA


IP-Mdc-14 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Mdc-14 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Mdc-14

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Mdc-14 DNA


IP-Med-0 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Med-0 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Med-0

text: Spain

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Med-0 DNA

characteristic: title


IP-Med-3 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Med-3 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Med-3

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: IP-Med-3 DNA


IP-Met-6 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Met-6 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Met-6

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Met-6 DNA


IP-Mos-5 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-Mos-5 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-Mos-5

characteristic: description

text: Spain

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Mos-5 DNA

characteristic: title


IP-Mos-9 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Mos-9 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Mos-9

text: Spain

characteristic: geographic location (country and/or sea)

text: growth chamber

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: IP-Mos-9 DNA


IP-San-9 DNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IP-San-9 DNA

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Rosette of a single 26-days-old individual of accession IP-San-9

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

text: vegetative

text: soil

text: Rosettes

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-San-9 DNA


IP-Sln-22 DNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IP-Sln-22 DNA

text: thale cress

text: Rosette of a single 26-days-old individual of accession IP-Sln-22

text: Spain

text: growth chamber

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Rosettes

characteristic: plant structure

text: diploid

text: healthy

text: Arabidopsis thaliana

text: ecotype

text: IP-Sln-22 DNA

characteristic: title


text: Technion, Israel

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Technion, Israel

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: neural cell

text: house mouse

characteristic: common name

text: Protocols: Transcardial aCSF perfusion, brain extraction and sectioning, microdissection of full amygdala, single-cell dissociation, scRNA-seq; as described in Zeisel et al. 2018 7-11 week old male C57Bl/6JOlaHsd mice were habituated to a behavioral arena for 20min, followed by 6 cycles of (foot shock-tone shock (US-CS) pairing: 35sec tone (CS), 750ms 0.7mV foot shock (US), 24sec rest. For learning and consolidation, mice were sampled 2h, 8h and 24h after tone-cued fear condition (CFC). For recall, 24h after CFC, 4 mice were exposed to 6 cycles of the tone cue alone (35sec CS, 25sec rest). The 3 mice exhibiting strongest freezing behavior compared to non-FC controls undergoing the same session were sacrificed 2h later. Naïve, home cage (HC) littermates served as controls in each experimental batch. 10Xgenomics 3' V3 10Xgenomics 3' V3

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: amygdala

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Technion, Israel

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neural cell

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: amygdala

text: Mus musculus

text: female


E-MTAB-12090:Cdk12 Control 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12090:Cdk12 Control 1

tag: Namespace:School of Medicine, Cardiff University, UK

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: fruit fly

text: Protocols: Whole Drosophila heads (N=6-7 heads pooled per sample) from 7-day old females, of the desired genotypes, were dissected and snap frozen for later use. RNA extraction was performed according to the RNAqueous-Micro kit (AM1931). Quality control of RNA was performed using Qubit and tapestation. Next, samples were normalised and library prep was performed using an Illumina TruSeq stranded mRNA kit. This kit involved poly-A enrichment and TruSeq3 adapter ligation.

text: adult

text: Sp/CyO;FRT2A, FRT82B/TM3

text: mixed pool of 6 to 7 heads

characteristic: individual

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: female

text: Cdk12 Control 1

characteristic: title


E-MTAB-12090:Cdk12 Control 2

text: School of Medicine, Cardiff University, UK

text: public

text: E-MTAB-12090:Cdk12 Control 2

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Sp/CyO;FRT2A, FRT82B/TM3

characteristic: genotype

text: mixed pool of 6 to 7 heads

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

characteristic: organism part

text: Drosophila melanogaster

text: female

text: Cdk12 Control 2