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tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

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text: Rebekka Pohl, Monika Bucher, Andreas Lindauer, Andreas Grutsch, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

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text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Maurice Redondo, Olivier Kobel, Christoph Noppen, Sebastian Kurscheid, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

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characteristic: ENA-CHECKLIST

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text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

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text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620132

characteristic: description

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unit: DD

characteristic: geographic location (latitude)

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text: Metagenome-assembled genome: chick09__bin1

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text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620142

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text: USA

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (region and locality)

text: metagenome-assembled genome

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text: Metagenome-assembled genome: chick19__bin17


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text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620152

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text: Candidatus Alistipes merdipullorum

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text: Metagenome-assembled genome: chick29__bin16

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text: USA

characteristic: geographic location (country and/or sea)

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characteristic: geographic location (region and locality)

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text: Candidatus Barnesiella excrementavium

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text: Metagenome-assembled genome: chick41__bin14


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text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124

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text: USA

characteristic: geographic location (latitude)

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text: uncultured Parabacteroides sp.

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text: uncultured Parabacteroides sp.

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text: Metagenome-assembled genome: chick01__bin1

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characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620158

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Bacilli bacterium

text: DSM US

text: uncultured Bacilli bacterium

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text: multi-marker approach

text: Metagenome-assembled genome: chick35__bin6


characteristic: ENA-CHECKLIST

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text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620146

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text: caecal content

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characteristic: geographic location (latitude)

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text: metagenome-assembled genome

characteristic: investigation type

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text: Candidatus Alistipes intestinipullorum

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text: Candidatus Alistipes intestinipullorum

text: Illumina HiSeq 2000

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text: multi-marker approach

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text: Metagenome-assembled genome: chick23__bin4

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: INRA-META

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text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

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text: default parameters

characteristic: binning parameters

characteristic: binning software

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characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620153

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Fimimonas gallinarum

text: DSM US

text: Candidatus Fimimonas gallinarum

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick30__bin1


characteristic: ENA-CHECKLIST

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text: INRA-META

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text: SPAdes 3.15.4

text: default parameters

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characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

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text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620132

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Christensenellaceae bacterium

characteristic: organism

text: DSM US

characteristic: project name

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text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick09__bin3

characteristic: title


characteristic: ENA-CHECKLIST

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text: INRA-META

characteristic: INSDC center name

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text: public

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text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

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text: host-associated habitat

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text: checkm2 v0.1.3

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Alistipes cottocaccae

text: DSM US

text: Candidatus Alistipes cottocaccae

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick09__bin4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620161

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Tidjanibacter sp.

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Tidjanibacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick38__bin11

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620167

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Helicobacter pullorum

text: DSM US

text: Helicobacter pullorum

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick44__bin6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick23__bin13

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620144

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Barnesiella intestinihominis

text: DSM US

text: Barnesiella intestinihominis

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick21__bin6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620166

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Alistipes merdavium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Alistipes merdavium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick43__bin9

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620170

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Lactobacillus gallinarum

text: DSM US

text: Lactobacillus gallinarum

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick47__bin3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Alistipes stercorigallinarum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Alistipes stercorigallinarum

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick47__bin11

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620159

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Enterousia intestinigallinarum

text: DSM US

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick36__bin13


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620145

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Parabacteroides merdae

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Parabacteroides merdae

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick22__bin10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620151

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Acidaminococcaceae bacterium

text: DSM US

text: Acidaminococcaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick28__bin10


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620137

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Caccalectryoclostridium excrementigallinarum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick14__bin1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Parasutterella excrementihominis

text: DSM US

text: Parasutterella excrementihominis

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: dsm_us_coassembly__bin29


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620158

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Scatovivens faecipullorum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Scatovivens faecipullorum

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick35__bin15

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620166

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Phocaeicola dorei

text: DSM US

text: Phocaeicola dorei

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick43__bin2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Galligastranaerophilus intestinigallinarum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick28__bin15

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620167

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Bacilli bacterium

text: DSM US

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick44__bin11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620131

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Coprovivens excrementavium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Coprovivens excrementavium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick08__bin8

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620152

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: DSM US

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick29__bin5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620126

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Mediterraneibacter excrementipullorum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick03__bin13

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

text: DSM US

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: dsm_us_coassembly__bin103


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620128

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick05__bin1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620164

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Rikenella microfusus

text: DSM US

text: Rikenella microfusus

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick41__bin16


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620134

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Alistipes onderdonkii

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Alistipes onderdonkii

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick11__bin1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Alistipes excrementavium

text: DSM US

text: Candidatus Alistipes excrementavium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick41__bin11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Lactobacillus crispatus

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Lactobacillus crispatus

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick05__bin7

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620158

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Bacilli bacterium

text: DSM US

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick35__bin7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620130

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Parabacteroides distasonis

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Parabacteroides distasonis

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick07__bin16

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620145

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Faeciplasma pullistercoris

text: DSM US

text: Candidatus Faeciplasma pullistercoris

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick22__bin6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Rikenellaceae bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Rikenellaceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: dsm_us_coassembly__bin124

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620160

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Gallimonas intestinigallinarum

text: DSM US

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick37__bin16


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620142

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick19__bin11

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620126

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Bacteroidales bacterium

text: DSM US

text: uncultured Bacteroidales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick03__bin9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Alistipes avicola

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Alistipes avicola

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick07__bin13

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620161

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Bacteroides clarus

text: DSM US

text: Bacteroides clarus

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick38__bin12


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Coproplasma stercoripullorum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Coproplasma stercoripullorum

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick01__bin4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620162

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Campylobacter coli

text: DSM US

text: Campylobacter coli

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick39__bin11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620159

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick36__bin18

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Avidehalobacter gallistercoris

text: DSM US

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: dsm_us_coassembly__bin100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Coprobacter sp.

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Coprobacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick36__bin5

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620168

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Stercoripulliclostridium merdigallinarum

text: DSM US

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick45__bin4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620151

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Alistipes dispar

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Alistipes dispar

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick28__bin13

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620129

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Faecalibacterium gallistercoris

text: DSM US

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick06__bin4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620131

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick08__bin2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Candidatus Fimenecus excrementavium

text: DSM US

text: Candidatus Fimenecus excrementavium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick08__bin3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620127

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Faecousia faecipullorum

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Candidatus Faecousia faecipullorum

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick04__bin1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620134

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Parabacteroides johnsonii

text: DSM US

text: Parabacteroides johnsonii

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick11__bin13


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620145

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick22__bin16

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Bacilli bacterium

text: DSM US

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick04__bin4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick04__bin8

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620161

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Merdimonas faecis

text: DSM US

text: Merdimonas faecis

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick38__bin4


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620144

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Bacteroides uniformis

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: Bacteroides uniformis

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick21__bin10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: Butyricimonas faecihominis

text: DSM US

text: Butyricimonas faecihominis

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: chick21__bin2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick21__bin4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA-META

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: SPAdes 3.15.4

characteristic: assembly software

text: default parameters

characteristic: binning parameters

characteristic: binning software

text: host-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: checkm2 v0.1.3

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620124,ERS13620125,ERS13620126,ERS13620127,ERS13620128,ERS13620129,ERS13620130,ERS13620131,ERS13620132,ERS13620133,ERS13620134,ERS13620135,ERS13620137,ERS13620138,ERS13620139,ERS13620140,ERS13620142,ERS13620143,ERS13620144,ERS13620145,ERS13620146,ERS13620147,ERS13620149,ERS13620150,ERS13620151,ERS13620152,ERS13620153,ERS13620155,ERS13620158,ERS13620159,ERS13620160,ERS13620161,ERS13620162,ERS13620164,ERS13620166,ERS13620167,ERS13620168,ERS13620169,ERS13620170,ERS13620171

text: caecal content

text: USA

characteristic: geographic location (country and/or sea)

text: Middle West

characteristic: geographic location (region and locality)

text: metagenome-assembled genome

text: chicken caecal content

text: host-associated habitat

text: chicken gut metagenome

text: uncultured Clostridia bacterium

text: DSM US

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: dsm_us_coassembly__bin89


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRA-META

text: public

text: SPAdes 3.15.4

text: default parameters

text: SemiBin v1.4.0, MetaDecoder v1.0.16, metaWRAP v1.3

text: host-associated habitat

characteristic: completeness score

text: checkm2 v0.1.3

characteristic: completeness software

characteristic: contamination score

text: This sample represents a metagenomic bin from the metagenomic sample(s) ERS13620158

characteristic: description

text: caecal content

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Middle West

text: metagenome-assembled genome

characteristic: investigation type

text: chicken caecal content

text: host-associated habitat

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: organism

text: DSM US

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: chick35__bin5

characteristic: title