E-MTAB-12593:Sample 6_Normal

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

characteristic: INSDC first public

text: public

text: E-MTAB-12593:Sample 6_Normal

text: ArrayExpress

text: human

text: prostate cancer

text: individual 6

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 6_Normal

characteristic: title


E-MTAB-12593:Sample 7_Cancer

status: PUBLIC

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text: E-MTAB-12593:Sample 7_Cancer

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: The work described in this report is a study using targeted sequencing-based RNA expression analysis on formalin-fixed, paraffin-embedded (FFPE) tissue sections of human prostate. The radical prostatectomy specimens from the 15 male patients included in this study were labelled, weighed and formalin fixed. This included 15 samples from each of three different regions of interest - normal prostate tissue, cancerous tissue, and the microenvironment. An excision of 10mm2 was taken for normal prostate and cancerous regions, and an excision of 5mm2 was taken for microenvironment due to the smaller area available for this region across slides. The radical prostatectomy specimens from the 15 male patients included in this study were labelled, weighed and formalin fixed. Subsequently, the radical prostatectomy specimens were sliced in patient-specific moulds to assist in correlating and adjusting magnetic resonance images with histology. Before an excision of 10mm2 was taken for normal prostate and cancerous regions, and an excision of 5mm2 was taken for microenvironment due to the smaller area available for this region across slides. After the buffers have been prepared, proceed to sample excision. Begin by scraping away paraffin adjacent to the tissue area of interest with a single-edge disposable razor blade. Excess paraffin can form a thick layer on top of the liquid in subsequent steps, inhibiting digestion and mixing. Prepare a new 96-well PCR plate, then proceed with one sample at a time. Add 1.8 μL of 1X Lysis Buffer per mm2 of sample tissue to the well. Attach a fresh sterile tip to a single-channel hand pipet or prepare a sterile plastic toothpick. Use a fresh tip/toothpick for every sample. Excise the target area by scraping it off the glass slide with a disposable razor. Use a fresh razor for each sample. Transfer the excised tissue into the plate well. Use the pipet tip or toothpick to push the sample off the blade, into the well, and down to the bottom of the well. Static electricity may cause the tissue to fly off the transfer tool. This can be prevented by pre-wetting the transfer tool in lysis buffer by dipping it into the well. If using a pipette tip, dispense any liquid that may have entered the tip by capillary action into the well. Overlay sample with molecular biology grade mineral oil. Use 10 μL plus 1 μL per mm2 of tissue in the sample. For example, add 20 μL to a 10 mm2 tissue input. When all samples have been processed, visually inspect the plate to ensure there is tissue at the bottom of each assay well. Spin the plate at 1000 rcf for 2 minutes. Incubate the plate at 95°C for 5 minutes to melt the tissue, then cool it to 4°C for 5 minutes. Add 0.2 μL Protease Mix per mm2 of tissue to the aqueous layer at the bottom of each sample well. For example, add 2 μL for a 10 mm2 input. Mix the aqueous layer by trituration, taking care not to aspirate the tissue sample. Spin the plate at 1000 rcf for 2 minutes to bring the aqueous phase to the bottom of the well. This will also separate the oil/paraffin layer from the lysate. Incubate the plate at 37°C for 30 minutes for tissue lysis. After tissue lysis, visually inspect the wells. You may see tissue fragments in the aqueous layer. To homogenize the lysate, triturate until the lysate becomes uniform. Take care to avoid bubbles. Spin the plate at 1000 rcf for 2 minutes to separate layers. FFPE lysates can be used immediately or stored at -80°C for up to one year. The TempO-Seq assay utilizes a detector oligo (DO) pool specific to the RNA targets to be monitored. BioSpyder offers fixed content and custom DO pools to measure focused sets of transcripts, up to whole transcriptomes. In addition to FFPE tissues, the assay can utilize purified RNA, and cell lysates. Both positive and negative control samples can be included. The TempO-Seq assay does not require extraction or purification of RNA from FFPE samples. Instead, tissue is scraped from a slide into lysis buffer, melted, and lysed. This tissue lysate is directly added into the assay. RNA within the lysate is annealed to a matched pair of detector oligos, with each pair of DOs targeting a single transcript. The DO pool targets up to tens of thousands of RNA sequences, depending on the content of the assay. The DOs hybridize to sequences of the targeted RNA molecule such that their respective 3’ and 5’ ends are immediately adjacent. After DO annealing, excess oligos and mis-hybridized or weakly hybridized DOs are removed by nuclease digestion, and the annealed oligos are ligated to form amplifiable templates. The ligated DOs are amplified with one pair of primers (making each PCR reaction single-plex regardless of the number of genes measured). A different combination of sample index/tag sequences can be assigned to each sample. The PCR products are pooled together into a sequencing library, which is then purified and run on an Illumina sequencer to count the number of ligated detector oligo sequences per sample (ThermoFisher-compatible kit under development) . Because TempO-Seq includes an end-point PCR reaction, individual quantitation of the amplified products before library pooling is not needed. Very low concentration and negative control samples are expected to show low reads in the sequencing data. The resulting sequencing read counts from the pooled library can be analyzed to determine the abundance of each gene from each sample. Many types of further analysis are then possible; for example, changes in expression due to treatments or differential expression between samples can be determined. In TempO-Seq, each Detector Oligo consists of a sequence complementary to an mRNA target plus a universal (i.e. same for every targeted gene) primer binding site. They anneal in immediate juxtaposition to each other on the targeted RNA template such that they can be ligated together. Ligated detector oligos are PCR-amplified using a primer set (single-plex PCR reaction, with a single primer pair for each sample) that introduces both the adaptors required for sequencing and a sample-specific barcode. The barcode sequences flank the target sequence and are inserted appropriately into the standard Illumina adaptors to permit standard dual-index sequencing of the barcodes and deconvolution of sample-specific reads from the sequencing data using the standard Illumina software. All the PCR-amplified and barcoded samples are pooled into a single library for sequencing. Sequencing reads are demultiplexed using the standard sequencing instrument software for each sample using the barcodes to give a FASTQ file for each.

characteristic: description

text: prostate cancer

characteristic: disease

text: individual 7

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 7_Cancer


E-MTAB-12593:Sample 7_ME

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text: DUNDEE

characteristic: INSDC first public

text: public

text: E-MTAB-12593:Sample 7_ME

text: ArrayExpress

text: human

text: prostate cancer

text: individual 7

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 7_ME

characteristic: title


E-MTAB-12593:Sample 7_Normal

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text: DUNDEE

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text: E-MTAB-12593:Sample 7_Normal

text: ArrayExpress

text: human

text: prostate cancer

text: individual 7

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 7_Normal


E-MTAB-12593:Sample 8_Cancer

text: DUNDEE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12593:Sample 8_Cancer

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: prostate cancer

text: individual 8

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 8_Cancer


E-MTAB-12593:Sample 8_ME

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 8_ME

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: prostate cancer

characteristic: disease

text: individual 8

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 8_ME


E-MTAB-12593:Sample 8_Normal

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text: E-MTAB-12593:Sample 8_Normal

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characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: normal tissue

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 8_Normal


E-MTAB-12593:Sample 9_Cancer

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text: DUNDEE

characteristic: INSDC first public

text: public

text: E-MTAB-12593:Sample 9_Cancer

text: ArrayExpress

text: human

text: prostate cancer

text: individual 9

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 9_Cancer

characteristic: title


E-MTAB-12593:Sample 9_ME

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text: DUNDEE

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text: E-MTAB-12593:Sample 9_ME

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text: human

text: prostate cancer

text: individual 9

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 9_ME


E-MTAB-12593:Sample 9_Normal

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characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12593:Sample 9_Normal

characteristic: Submitter Id

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text: human

text: prostate cancer

text: individual 9

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 9_Normal


E-MTAB-12593:Sample 11_Cancer

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 11_Cancer

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: prostate cancer

characteristic: disease

text: individual 11

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 11_Cancer


E-MTAB-12593:Sample 11_ME

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 11_ME

text: ArrayExpress

text: human

text: prostate cancer

text: individual 11

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: microenvironment

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 11_ME


E-MTAB-12593:Sample 11_Normal

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characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

characteristic: INSDC first public

text: public

text: E-MTAB-12593:Sample 11_Normal

text: ArrayExpress

text: human

text: prostate cancer

text: individual 11

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 11_Normal

characteristic: title


E-MTAB-12593:Sample 10_Cancer

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characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

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text: E-MTAB-12593:Sample 10_Cancer

text: ArrayExpress

text: human

text: prostate cancer

text: individual 10

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 10_Cancer


E-MTAB-12593:Sample 10_ME

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characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12593:Sample 10_ME

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text: human

text: prostate cancer

text: individual 10

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 10_ME


E-MTAB-12593:Sample 10_Normal

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 10_Normal

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: prostate cancer

characteristic: disease

text: individual 10

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 10_Normal


E-MTAB-12593:Sample 12_Cancer

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 12_Cancer

text: ArrayExpress

text: human

text: prostate cancer

text: individual 12

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 12_Cancer


E-MTAB-12593:Sample 12_ME

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characteristic: INSDC first public

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text: E-MTAB-12593:Sample 12_ME

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text: human

text: prostate cancer

text: individual 12

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 12_ME

characteristic: title


E-MTAB-12593:Sample 12_Normal

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characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12593:Sample 12_Normal

text: ArrayExpress

text: human

text: prostate cancer

text: individual 12

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 12_Normal


E-MTAB-12593:Sample 13_Cancer

text: DUNDEE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12593:Sample 13_Cancer

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: prostate cancer

text: individual 13

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 13_Cancer


E-MTAB-12593:Sample 13_ME

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 13_ME

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: prostate cancer

characteristic: disease

text: individual 13

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 13_ME


E-MTAB-12593:Sample 13_Normal

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 13_Normal

text: ArrayExpress

text: human

text: prostate cancer

text: individual 13

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: normal tissue

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 13_Normal


E-MTAB-12593:Sample 14_Cancer

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

characteristic: INSDC first public

text: public

text: E-MTAB-12593:Sample 14_Cancer

text: ArrayExpress

text: human

text: prostate cancer

text: individual 14

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 14_Cancer

characteristic: title


E-MTAB-12593:Sample 14_ME

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DUNDEE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-12593:Sample 14_ME

text: ArrayExpress

text: human

text: prostate cancer

text: individual 14

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: microenvironment

text: Homo sapiens

text: male

text: Sample 14_ME


E-MTAB-12593:Sample 14_Normal

text: DUNDEE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12593:Sample 14_Normal

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: prostate cancer

text: individual 14

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 14_Normal


E-MTAB-12593:Sample 15_Cancer

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 15_Cancer

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: prostate cancer

characteristic: disease

text: individual 15

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: neoplasm

text: Homo sapiens

text: male

text: Sample 15_Cancer


E-MTAB-12593:Sample 15_ME

text: DUNDEE

text: public

text: E-MTAB-12593:Sample 15_ME

text: ArrayExpress

text: human

text: prostate cancer

text: individual 15

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate gland

characteristic: organism part

text: microenvironment

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 15_ME


E-MTAB-12593:Sample 15_Normal

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characteristic: ENA-FIRST-PUBLIC

text: DUNDEE

characteristic: INSDC first public

text: public

text: E-MTAB-12593:Sample 15_Normal

text: ArrayExpress

text: human

text: prostate cancer

text: individual 15

text: Homo sapiens

text: Homo sapiens

text: prostate gland

text: normal tissue

text: Homo sapiens

text: male

text: Sample 15_Normal

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VRIJE UNIVERSITEIT BRUSSEL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 100 weeks, Core

text: Cheese factory

characteristic: geographic location (region and locality)

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 26 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 31 weeks, Core

characteristic: description

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

characteristic: organism

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 45 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 75 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A1, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 100 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 26 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 31 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 45 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 75 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A2, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 100 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 26 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 31 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 45 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 75 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A3, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A4, 100 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A4, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A4, 45 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A4, 75 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A4, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A5, 100 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A5, 45 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese A5, 75 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese B5, 36 weeks, Rind

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese B6, 36 weeks, Rind

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C1, 75 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C4, 36 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C4, 75 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C5, 36 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C5, 75 weeks, Core

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C5, 36 weeks, Rind

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text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C6, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C6, 45 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C6, 75 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C6, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C7, 100 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C7, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C7, 45 weeks, Core

text: Cheese factory

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text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C7, 75 weeks, Core

text: Cheese factory

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C7, 36 weeks, Rind

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C8, 100 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C8, 36 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C8, 45 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C8, 75 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of cheese C8, 36 weeks, Rind

text: Cheese factory

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of starter culture mixture C

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Aa

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ab

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ac

text: Cheese factory

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ad

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ae

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Af

text: Cheese factory

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ag

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ah

text: Cheese factory

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ba

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Bb

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Bc

text: Cheese factory

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Bd

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Be

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Bf

text: Cheese factory

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text: public

text: Vrije Universiteit Brussel

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text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Bh

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text: Vrije Universiteit Brussel

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Cb

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Cc

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text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Cd

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text: public

text: Vrije Universiteit Brussel

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text: Vrije Universiteit Brussel

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text: public

text: Vrije Universiteit Brussel

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: Full-length, high-throughput 16S rRNA gene sequencing of Leuconostoc_isolate_Ch

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

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text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A2, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A2, 36 weeks, Rind

text: Cheese factory

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text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A3, 36 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A3, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A4, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A4, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A5, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A5, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A6, 36 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A6, 36 weeks, Rind

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A7, 36 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A7, 36 weeks, Rind

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A8, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese A8, 36 weeks, Rind

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B1, 36 weeks, Core

text: Cheese factory

text: Gouda cheese

text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B1, 36 weeks, Rind

text: Cheese factory

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text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B2, 36 weeks, Core

text: Cheese factory

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text: metagenome

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B2, 36 weeks, Rind

text: Cheese factory

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text: metagenome

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B3, 36 weeks, Core

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B3, 36 weeks, Rind

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B4, 36 weeks, Core

text: Cheese factory

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text: metagenome

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B4, 36 weeks, Rind

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B5, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B5, 36 weeks, Rind

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text: metagenome

text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

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text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B6, 36 weeks, Rind

text: Cheese factory

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B7, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese B7, 36 weeks, Rind

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C1, 36 weeks, Core

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C1, 36 weeks, Rind

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C2, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C2, 36 weeks, Rind

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C3, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C3, 36 weeks, Rind

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C4, 36 weeks, Core

text: Cheese factory

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C4, 36 weeks, Rind

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C5, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C5, 36 weeks, Rind

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C6, 36 weeks, Core

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text: metagenome


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C6, 36 weeks, Rind

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C7, 36 weeks, Core

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text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C7, 36 weeks, Rind

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text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C8, 36 weeks, Core

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text: public

text: Vrije Universiteit Brussel

text: High-throughput ITS sequencing of cheese C8, 36 weeks, Rind

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tag: Namespace:WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

text: Human fecal bacterial isolate annotated genome sequence

text: Bifidobacterium longum

text: Bifidobacterium longum


text: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES

text: public

text: NZ_Bifidobacterium_longum_infantis_40721_2C3_SN

text: Bifidobacterium longum

text: Bifidobacterium longum


text: public

text: NZ_Bifidobacterium_longum_infantis_Malawi_264A_V2.1.4_MC2

text: Bifidobacterium longum

text: Bifidobacterium longum


text: public

text: NZ_Bifidobacterium_longum_infantis_Malawi_264A_V2.1.8_MC1

text: Bifidobacterium longum

text: Bifidobacterium longum


text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: TITLE

text: Mycobacterium tuberculosis

characteristic: common name

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: public

tag: Namespace:Finnish National Institute for Health and Welfare

text: tap water

text: Legionella pneumophila serogroup 1

text: Legionella pneumophila serogroup 1

text: Lp 1


text: Finnish National Institute for Health and Welfare

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text: tap water

text: Legionella pneumophila serogroup 1

text: Legionella pneumophila serogroup 1

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text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

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characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


text: SC

text: public

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: not provided

text: United Kingdom

text: Wales

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Rosalind Franklin Laboratory

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Rosalind Franklin Laboratory

text: not provided

text: United Kingdom

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tree of Life Programme

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: elevation

text: Armenia

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Vayots Dzor | Gnisgik vill.

characteristic: geographic location (region and locality)

text: tragacantnik

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus surakovi

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Polyommatus surakovi

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

text: Armenia

characteristic: geographic location (country and/or sea)

text: Vayots Dzor | Gnisgik vill.

text: tragacantnik

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus iphigenia

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Polyommatus iphigenia

text: MALE

text: N


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

characteristic: collection date

characteristic: elevation

text: Armenia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ararat reg. | Lanjar vill.

characteristic: geographic location (region and locality)

text: tragacantnik

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus admetus

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Polyommatus admetus

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Alexander Dantchenko

text: NOT COLLECTED

text: Armenia

text: Vayots Dzor | Gnisgik vill.

text: tragacantnik

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus damon

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Polyommatus damon

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

characteristic: collection date

characteristic: elevation

text: Armenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Vayots Dzor | Gnisgik vill.

text: tragacantnik

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus pseudactis

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Polyommatus pseudactis

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Alexander Dantchenko

text: NOT COLLECTED

text: Armenia

characteristic: geographic location (longitude)

text: Ararat reg. | Lanjar vill.

characteristic: geographic location (region and locality)

text: tragacantnik

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus eriwanensis

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Polyommatus eriwanensis

text: MALE

text: N


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collecting institution

text: Russia

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Lysandra coridon

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Lysandra coridon

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collection date

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Lysandra coridon

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Lysandra coridon

text: FEMALE

text: N


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

text: Russia

characteristic: geographic location (longitude)

text: Moscow reg. | Lishnyagi vill.

characteristic: geographic location (region and locality)

text: chalc slope

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Lysandra coridon

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Lysandra coridon

text: FEMALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: Russia

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus damocles

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Polyommatus damocles

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collecting institution

characteristic: collection date

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus damocles

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Polyommatus damocles

text: FEMALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: Russia

characteristic: geographic location (longitude)

text: Bashkortastan

characteristic: geographic location (region and locality)

text: steppe

characteristic: habitat

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus damone

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

text: Polyommatus damone

text: MALE

text: N


text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collecting institution

text: Russia

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus daphnis

text: WHOLE ORGANISM

text: ToL

characteristic: project name

text: Polyommatus daphnis

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collection date

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus daphnis

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Polyommatus daphnis

text: FEMALE

text: N


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

text: Armenia

characteristic: geographic location (longitude)

text: Vayots Dzor | Gnisgik vill.

characteristic: geographic location (region and locality)

text: tragacantnik

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus iphigenia

text: WHOLE ORGANISM

characteristic: organism part

characteristic: sample same as

text: Polyommatus iphigenia

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collection date

text: Armenia

text: Vayots Dzor | Gnisgik vill.

text: tragacantnik

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus surakovi

text: WHOLE ORGANISM

characteristic: project name

text: Polyommatus surakovi

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

characteristic: elevation

text: Armenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ararat reg. | Lanjar vill.

characteristic: geographic location (region and locality)

text: tragacantnik

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus admetus

characteristic: organism

text: WHOLE ORGANISM

text: Polyommatus admetus

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collection date

text: Armenia

text: Vayots Dzor | Gnisgik vill.

text: tragacantnik

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus damon

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Polyommatus damon

text: MALE

text: N


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

characteristic: elevation

text: Armenia

characteristic: geographic location (country and/or sea)

text: Vayots Dzor | Gnisgik vill.

text: tragacantnik

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus pseudactis

text: WHOLE ORGANISM

text: Polyommatus pseudactis

text: MALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collection date

text: Armenia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ararat reg. | Lanjar vill.

characteristic: geographic location (region and locality)

text: tragacantnik

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Polyommatus eriwanensis

characteristic: organism

text: WHOLE ORGANISM

text: Polyommatus eriwanensis

text: MALE

text: N


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collecting institution

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Lysandra coridon

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Lysandra coridon

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collection date

text: Russia

characteristic: geographic location (latitude)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Lysandra coridon

text: WHOLE ORGANISM

text: Lysandra coridon

text: FEMALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Alexander Dantchenko

text: NOT COLLECTED

characteristic: collecting institution

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: Moscow reg. | Lishnyagi vill.

characteristic: geographic location (region and locality)

text: chalc slope

characteristic: habitat

text: Alexander Dantchenko

text: NOT COLLECTED

text: adult

text: Lysandra coridon

characteristic: organism

text: WHOLE ORGANISM

text: Lysandra coridon

text: FEMALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collection date

text: Russia

characteristic: geographic location (latitude)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus damocles

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Polyommatus damocles

text: MALE

text: N


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collecting institution

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus damocles

text: WHOLE ORGANISM

text: Polyommatus damocles

text: FEMALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collection date

text: Russia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Bashkortastan

characteristic: geographic location (region and locality)

text: steppe

characteristic: habitat

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus damone

characteristic: organism

text: WHOLE ORGANISM

text: Polyommatus damone

text: MALE

text: N


text: Sanger Institute

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collecting institution

characteristic: elevation

text: Russia

characteristic: geographic location (country and/or sea)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

characteristic: lifestage

text: Polyommatus daphnis

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Polyommatus daphnis

text: MALE

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Vladimir Lukhtanov

text: NOT COLLECTED

characteristic: collection date

text: Russia

characteristic: geographic location (latitude)

text: Saratov reg. | Piche-Pandra Mt.

text: steppe

text: Vladimir Lukhtanov

text: NOT COLLECTED

text: adult

text: Polyommatus daphnis

text: WHOLE ORGANISM

text: Polyommatus daphnis

text: FEMALE

characteristic: sex

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid