characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: house mouse

characteristic: common name

text: Protocols: Mouse ES cells were cultured on 0.2% gelatin-coated plates in ES medium (DMEM, supplemented with 15% FBS, LIF, 2-Mercaptoethanol, 2 mM L-Glutamine and 1x non-essential amino acids) at 37°C and 5% CO2. Medium was changed daily and cells were split every second day. ES cell permeabilization was performed on ice for 10 min and followed by 1 wash with the permeabilization buffer and centrifugations at 1000x g at 4°C. Cells were resuspended in storage buffer in appropriate aliquots, snap-frozen and stored at -80°C until further usage. For the experiment, 10MIO cells were used per sample with a spike-in of 0.5MIO permeabilized Drosophila KC cells. The nuclear run-on reaction was performed as a 2 biotin run-on. For this, the 2x Nuclear-run on master mix was mixed with biotin-11-UTP, biotin-11-CTP, ATP, GTP, H2O, RNase inhibitor and Sarkosyl. The reaction mix was pre-heated at 37°C and the appropriate number of cells added to each reaction vial, mixed thoroughly and incubated at 37°C for 5 min. To stop the reaction, 700 μl of the RNA Lysis Buffer from the ZYMO Quick-RNA Miniprep kit were added and vortexed. RNA extraction was performed according to the kits manual. Final RNA was eluted 2x with 50 μl H2O and pooled to a final volume of 100 μl. Precision Run-On sequencing (PRO-seq) was performed as described in (Mahat et al., 2016, doi:10.1038/nprot.2016.086) with some minor changes. Mouse embryonic stem (ES) cells were harvested using ice-cold Trypsin-EDTA, washed 2x with cold PBS and centrifugations at 200x g at 4°C. Permeabilization was performed on ice for 10 min and followed by 1 wash with the permeabilization buffer and centrifugations at 1000x g at 4°C. Cells were resuspended in storage buffer in appropriate aliquots, snap-frozen and stored at -80°C until further usage. For the experiment, 10MIO cells were used per sample with a spike-in of 0.5MIO permeabilized Drosophila KC cells (5%). The nuclear run-on reaction was performed as a 2 biotin run-on. For this, the 2x Nuclear-run on master mix was mixed with biotin-11-UTP, biotin-11-CTP, ATP, GTP, H2O, RNase inhibitor and Sarkosyl. The reaction mix was pre-heated at 37°C and the appropriate number of cells added to each reaction vial, mixed thoroughly and incubated at 37°C for 5 min. To stop the reaction, 700 μl of the RNA Lysis Buffer from the ZYMO Quick-RNA Miniprep kit were added and vortexed. RNA extraction was performed according to the kits manual. Final RNA was eluted 2x with 50 μl H2O and pooled to a final volume of 100 μl. For the base hydrolysis, the RNA was denatured for 40s at 65°C and snap-cooled on ice. Ice-cold 1N NaOH was added and incubated on ice for 10 min. RNA was precipitated, washed, air-dried and resuspended in 50 μl H2O plus 1 μl RNase Inhibitor. Biotin RNA enrichment was performed by adding 50 μl of pre-washed streptavidin beads and incubation on a rotator set to 8 rpm at RT for 20 min. Beads were washed 2x with ice-cold high-salt buffer, 2x ice-cold binding buffer and 1x low-salt buffer before the RNA was cleaned up using Trizol and cholorform. For the 3’ RNA adaptor ligation, the RNA pellet was dissolved in 4 μl of VRA3 3’ RNA adaptor dilution, heat-denatured at 65°C for 20s and placed on ice. 6 μl of the RNA ligation mix using T4 RNA ligase was added and incubated at 20°C for 4 hours and kept at 4°C overnight. The next day, a second biotin RNA enrichment was performed and the final RNA pellet dissolved in 5 μl H2O. RNA was heat-denatured at 65°C for 20s and snap-cooled on ice. For the 5’ cap repair reaction, the RNA was mixed with the enzyme mix containing RppH and ThermoPol Reaction Buffer and incubated at 37°C for 1 hour. For the following hydroxyl repair, 90 μl of the PNK mix were added and incubated at 37°C for 1 hour. The RNA was cleaned-up using Trizol and chloroform. For the 5’ RNA adaptor ligation, the RNA pellet was dissolved in 4 μl of VRA3 3’RNA adaptor dilution, heat-denatured at 65°C for 20s and placed on ice. 6 μl of the RNA ligation mix using T4 RNA ligase was added and incubated at 20°C for 4 hours and kept at 4°C overnight. The next day, a third biotin RNA enrichment was performed and the final RNA pellet dissolved in 10 μl H2O. The RNA was reverse transcribed using the Superscript IV transcriptase and the RP1 reverse-transcription primer. The correct number of PCR cycles was determined by test PCR and Bioanalyzer analysis. In the end, the final PCR was performed using 14 cycles and the final library was cleaned-up using magnetic SPRI beads at a ratio of 1.8x and further size selected with a SPRI beads ratio of 1.3x. The final library was run on a NextSeq 2000 P3 with 50 bp single-end.

characteristic: description

text: gene knock out

characteristic: genetic modification

text: dnmt1-/-; dnmt3a-/-; dnmt3b-/-

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

text: EMBL

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: gene knock out

text: tet1-/-; tet2-/-; tet3-/-

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


characteristic: External Id

text: University of Eastern Finland

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-13-01-2023-13:18:56:909-138677

tag: Namespace:University of Eastern Finland

text: human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: oral sample

text: subgingival sample

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: oral metagenome

characteristic: local environmental context

text: human oral metagenome

text: FINORAL

characteristic: project name

text: human oral metagenome


text: UTRECHT UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UTRECHT UNIVERSITY

characteristic: Submitter Id

text: BGISP-100 sequencing of VP140167

characteristic: description

text: China

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP140167


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP140170

text: China

text: Vibrio parahaemolyticus

characteristic: organism

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP140170

characteristic: title


characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

text: public

text: BGISP-100 sequencing of VP160144

text: China

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP160144


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP160476

text: China

characteristic: geographic location (country and/or sea)

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP160476


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP160611

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP160611


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP160699

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP160699


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP160717

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP160717


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP160776

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP160776


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161275

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161275


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161544

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161544


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161671

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161671


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161810

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161810


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161811

text: China

text: shell fish

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161811


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161917

text: China

text: pork

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161917


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP161965

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP161965


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP162132

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP162132


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP170237

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP170237


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP180207

text: China

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP180207


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP180407

text: China

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP180407


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP180409

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP180409


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP180961

text: China

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP180961


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP840079

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP840079


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP840090

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP840090


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP870051

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP870051


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP910015

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP910015


text: UTRECHT UNIVERSITY

text: public

text: BGISP-100 sequencing of VP960010

text: China

text: human

text: Vibrio parahaemolyticus

text: Vibrio parahaemolyticus

text: BGISP-100 sequencing of VP960010


text: public

text: FAIR Data Station

characteristic: Metadata submission software

tag: Namespace:National Institute of Public Health and Environment (RIVM)

characteristic: biosafety level

text: Wild Bank vole

characteristic: engorgement

text: organ

characteristic: environment (biome)

text: spleen

characteristic: environment (feature)

text: tissue

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: spleen

characteristic: host body site

characteristic: host taxid

text: 52.3874327 6.4348925

characteristic: latitude longitude

text: Hellendoornse berg, plot 9, the Netherlands

characteristic: location

characteristic: neoehrlichia qpcr cp value

text: spleen sample from Myodes glareolus 18-2837

characteristic: observation_unit description

characteristic: observation_unit identifier

text: Neoehrlichia 06

characteristic: observation_unit name

text: Neoehrlichia mikurensis

characteristic: packageIdentifier

text: Host associated

characteristic: packageName

text: spleen sample from Myodes glareolus

characteristic: sample description

characteristic: sample identifier

text: Neoehrlichia 06

characteristic: sample name

text: Neoehrlichia mikurensis

text: Neoehrlichia mikurensis

text: Neoehrlichia 06


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: National Institute of Public Health and Environment (RIVM)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: FAIR Data Station

characteristic: Metadata submission software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: biosafety level

text: Wild Bank vole

characteristic: engorgement

text: organ

characteristic: environment (biome)

text: spleen

characteristic: environment (feature)

text: tissue

text: Netherlands

characteristic: geographic location (country and/or sea)

text: spleen

text: 52.310893 6.411192

text: Forested area close to Holten, the Netherlands

text: Hellendoornse berg, plot 9

text: spleen sample from Myodes glareolus 18-2804

text: Neoehrlichia 07

text: Neoehrlichia mikurensis

characteristic: organism

text: Host associated

text: spleen sample from Myodes glareolus

text: Neoehrlichia 07

text: Neoehrlichia mikurensis

text: Neoehrlichia mikurensis

text: Neoehrlichia 07

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

text: public

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230103_os_60/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_48/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_05/2022

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230103_os_58/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_40/2022

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_20/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230103_os_78/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_13/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_26/2022

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230103_os_72/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_69/2022

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_61/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230103_os_80/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_41/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC last update

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_24/2022

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230103_os_23/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_15/2022

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_28/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

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text: public

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text: Switzerland

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text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_31/2022

characteristic: organism

text: active surveillance not initiated by an outbreak


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text: hCoV-19/Switzerland/BE-IFIK-230103_os_52/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: public

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Switzerland

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text: hCoV-19/Switzerland/BE-IFIK-230103_os_51/2022

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text: public

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text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

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text: BE

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230103_os_49/2022

characteristic: organism


characteristic: ENA-CHECKLIST

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text: public

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text: hCoV-19/Switzerland/BE-IFIK-230103_os_50/2022

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: public

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characteristic: GISAID Accession ID

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: Switzerland

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text: hCoV-19/Switzerland/BE-IFIK-230103_os_76/2022

characteristic: organism


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text: public

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characteristic: ENA-CHECKLIST

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text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: Wales

text: Human

text: not provided

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text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

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characteristic: INSDC first public

text: public

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text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2

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characteristic: ENA-CHECKLIST

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characteristic: INSDC last update

text: public

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text: Lighthouse Lab in Glasgow

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text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

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text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Wales

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text: not provided

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text: Human

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text: not provided

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text: not provided

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text: not provided

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text: SC

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text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism


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text: SC

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text: public

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text: Lighthouse Lab in Glasgow

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text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

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text: not provided

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text: Rosalind Franklin Laboratory

text: not provided

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Scotland

text: Human

text: not provided

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text: Human

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text: not provided

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text: not provided

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text: not provided

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text: SC

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text: Rosalind Franklin Laboratory

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text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

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text: active surveillance in response to outbreak


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text: United Kingdom

text: England

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text: Human

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text: not provided

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text: not provided

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text: SC

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text: not provided

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text: United Kingdom

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text: not provided

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