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text: dopaminergic neuron

text: human

text: Protocols: The differentiation protocol of midbrain organoids was adapted. Briefly, we patterned the cells using the Kriks et al. 2011 protocol http://dx.doi.org/10.1038/nature10648 and we matured the neurons using the Jo et al. protocol . Dissociated single cells were washed with PBS three times, and counted and checkedfor viability on a Countess 3FL. 10,000 live single cells per sample were loaded onto the Chromium controller (10X Genomics) for single cell partitioning and barcoding. midbrain organoid dopaminergic differentiation Co-culture at Day 0 of iPSC between 2 different cell lines Chromium Next GEM Single Cell 3' Kit v3.1 Chromium Next GEM Single Cell 3' Kit v3.1

characteristic: description

text: adult

text: Parkinson's disease

text: SNCA-3x overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: floor plate of midbrain

text: induced pluripotent stem cell

text: skin

text: Homo sapiens


text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: dopaminergic neuron

text: human

text: adult

text: Parkinson's disease

text: corrected SNCA expression

text: monoculture

text: Homo sapiens

text: Homo sapiens

text: floor plate of midbrain

text: induced pluripotent stem cell

text: skin

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: dopaminergic neuron

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: Parkinson's disease

characteristic: disease

text: corrected SNCA expression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: floor plate of midbrain

text: induced pluripotent stem cell

text: skin

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

text: ArrayExpress

text: dopaminergic neuron

text: human

text: adult

text: Parkinson's disease

text: corrected SNCA expression

text: monoculture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: floor plate of midbrain

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: skin

characteristic: progenitor organism part

text: Homo sapiens


text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: dopaminergic neuron

text: human

characteristic: description

text: adult

text: Parkinson's disease

text: corrected SNCA expression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: floor plate of midbrain

text: induced pluripotent stem cell

text: skin

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: iBB-IST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Marine

characteristic: broad-scale environmental context

characteristic: collection date

text: Genome sequence of Alkalihalobacillus sp. strain CinArs1

text: sponge

characteristic: environmental medium

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cinachyrella sp.

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: South China Sea

characteristic: local environmental context

text: Alkalihalobacillus sp. CinArs1

text: Genome sequences of bacterial isolates from marine sponges from Taiwan

characteristic: project name

text: Alkalihalobacillus sp. CinArs1

text: Illumina NextSeq 550

characteristic: sequencing method

text: Genome sequence of Alkalihalobacillus sp. CinArs1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Marine

text: Genome sequence of Exiguobacterium sp. strain CinTr1

characteristic: description

text: sponge

text: Taiwan

text: Cinachyrella sp.

text: host-associated

text: South China Sea

text: Exiguobacterium sp. CinTr1

characteristic: organism

text: Exiguobacterium sp. CinTr1

text: Illumina NextSeq 550

text: Genome sequence of Exiguobacterium sp. CinTr1


text: iBB-IST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Marine

characteristic: broad-scale environmental context

characteristic: collection date

text: Genome sequence of Flammeovirga sp. strain SubArs3

text: sponge

characteristic: environmental medium

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Suberites sp.

characteristic: host common name

characteristic: host taxid

text: host-associated

text: South China Sea

text: Flammeovirga sp. SubArs3

text: Flammeovirga sp. SubArs3

text: Illumina NextSeq 550

text: Genome sequence of Flammeovirga sp. SubArs3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

text: public

text: Marine

text: Genome sequence of Flavobacteriaceae bacterium strain RHTr2

text: sponge

text: Taiwan

text: Rhabdastrella globostellata

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: South China Sea

characteristic: local environmental context

text: Flavobacteriaceae bacterium RhTr2

characteristic: project name

text: Flavobacteriaceae bacterium RhTr2

text: Illumina NextSeq 550

characteristic: sequencing method

text: Genome sequence of Flavobacteriaceae bacterium RHTr2

characteristic: title


text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Marine

characteristic: broad-scale environmental context

characteristic: collection date

text: Genome sequence of Acinetobacter sp. strain CinCl2

characteristic: description

text: sponge

text: Taiwan

text: Cinachyrella sp.

text: host-associated

text: South China Sea

text: Acinetobacter sp. CinCl2

characteristic: organism

text: Acinetobacter sp. CinCl2

text: Illumina NextSeq 550

text: Genome sequence of Acinetobacter sp. CinCl2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

text: public

text: Marine

text: Genome sequence of Grimontia sp. strain SpTr1

text: sponge

characteristic: environmental medium

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Spongia sp.

characteristic: host common name

characteristic: host taxid

text: host-associated

text: South China Sea

text: Grimontia sp. SpTr1

text: Grimontia sp. SpTr1

text: Illumina NextSeq 550

text: Genome sequence of Grimontia sp. SpTr1


text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Marine

text: Genome sequence of Thalassomonas sp. strain RHCl1

text: sponge

text: Taiwan

text: Rhabdastrella globostellata

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: South China Sea

characteristic: local environmental context

text: Thalassomonas sp. RHCl1

characteristic: project name

text: Thalassomonas sp. RHCl1

text: Illumina NextSeq 550

characteristic: sequencing method

text: Genome sequence of Thalassomonas sp. RHCl1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Marine

characteristic: broad-scale environmental context

characteristic: collection date

text: Genome sequence of Oceanospirillales bacterium strain XeTr1

characteristic: description

text: sponge

text: Taiwan

text: Xestospongia testudinaria

text: host-associated

text: South China Sea

text: Oceanospirillales bacterium XeTr1

characteristic: organism

text: Oceanospirillales bacterium XeTr1

text: Illumina NextSeq 550

text: Genome sequence of Oceanospirillales bacterium XeTr1


text: University of Gothenburg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Gothenburg

text: human

characteristic: common name

text: Cellular DNA from untreated Hela cells after exposure to 1000 J UVC radiation. Rep1

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from untreated Hela cells after exposure to 1000 J UVC radiation. Rep2

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from untreated Hela cells after exposure to 1000 J UVC radiation. Rep3

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from serum starved Hela cells after exposure to 1000 J UVC radiation. Rep1

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from serum starved Hela cells after exposure to 1000 J UVC radiation. Rep2

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from serum starved Hela cells after exposure to 1000 J UVC radiation. Rep3

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from serum stimulated Hela cells after exposure to 1000 J UVC radiation. Rep1

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from serum stimulated Hela cells after exposure to 1000 J UVC radiation. Rep2

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Cellular DNA from serum stimulated Hela cells after exposure to 1000 J UVC radiation. Rep3

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep1

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep2

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep3

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep4

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep5

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC� radiation. Rep6

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep7

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep8

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: Naked DNA from Hela cells exposed to 1000 J UVC radiation. Rep9

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: DNA from Hela cells not exposed UVC radiation. Rep1

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: DNA from Hela cells not exposed UVC radiation. Rep2

text: Homo sapiens

text: Homo sapiens


text: University of Gothenburg

text: public

text: human

text: DNA from Hela cells not exposed UVC radiation. Rep3

text: Homo sapiens

text: Homo sapiens


DNA viral sequences

text: University of Warwick

text: public

text: DNA viral sequences

tag: Namespace:University of Warwick

text: grassland soil (ENVO:00000106)

text: 0.2 - 1.15

unit: m

characteristic: depth

text: Soil was sampled and DNA extracted previously by Sharrar et al. (DOI: 10.1128/mBio.00416-20)

characteristic: elevation

text: grassland soil (ENVO:00000106)

characteristic: environmental medium

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: soil environment (ENVO:01001044)

characteristic: local environmental context

text: soil metagenome

text: Characterisation of viral communities throughout a grassland soil depth profile

characteristic: project name

text: soil metagenome

text: DNA viral sequences


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Bologna

text: public

characteristic: SRA accession

tag: Namespace:University of Bologna

characteristic: Submitter Id

text: human

text: RNA sequencing (Truseq RNA exome, Illumina)

text: Homo sapiens

text: Homo sapiens

text: brain (frontal cortex)

text: CJD MM1

characteristic: title


text: University of Bologna

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain (frontal cortex)

text: CJD VV2


text: public

tag: Namespace:Helmholtz Centre for Environmental Research - UFZ

text: hydrogenophilic-halophiles

characteristic: broad-scale environmental context

characteristic: collection date

text: hypersaline-medium

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: hydrogenophilic-halophiles

text: uncultured prokaryote

text: Sulfate reduction and homoacetogenesis at various hypersaline conditions: implications for H2-UGS

text: uncultured prokaryote


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Helmholtz Centre for Environmental Research - UFZ

text: public

text: hydrogenophilic-halophiles

text: hypersaline-medium

text: Germany

characteristic: geographic location (longitude)

text: hydrogenophilic-halophiles

characteristic: local environmental context

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:739-8846

tag: Namespace:UNIVERSITY OF PERPIGNAN/CNRS

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: 135 Mb

characteristic: estimated size

text: France

text: Plants were grown in growth chamber in soil under long day conditions. T=22ºC RH=55%, 120µmol.m-2.s-1

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: plant developmental stage

text: Plants were grown in soil under long day conditions. T=22ºC RH=55%, 120µmol.m-2.s-1

characteristic: plant growth medium

text: leaves

characteristic: plant structure

characteristic: ploidy

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF PERPIGNAN/CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:739-8847

characteristic: collection date

text: thale cress

text: 135 Mb

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Arabidopsis thaliana

characteristic: organism

text: leaves

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:739-8848

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: 135 Mb

text: France

characteristic: geographic location (longitude)

text: Arabidopsis thaliana

text: leaves

text: Arabidopsis thaliana


text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:740-8849

text: thale cress

text: 135 Mb

characteristic: estimated size

text: France

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: plant developmental stage

characteristic: plant growth medium

text: leaves

characteristic: plant structure

characteristic: ploidy

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF PERPIGNAN/CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:740-8850

characteristic: collection date

text: thale cress

text: 135 Mb

text: France

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: leaves

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:773-8851

characteristic: Submitter Id

text: thale cress

text: 135 Mb

text: France

characteristic: geographic location (latitude)

text: Arabidopsis thaliana

characteristic: organism

text: leaves

text: Arabidopsis thaliana


text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:773-8852

text: thale cress

characteristic: common name

text: 135 Mb

characteristic: estimated size

text: France

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: plant developmental stage

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF PERPIGNAN/CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:773-8853

text: thale cress

text: 135 Mb

text: France

text: Arabidopsis thaliana

text: leaves

characteristic: ploidy

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:774-8854

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: 135 Mb

text: France

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: leaves

text: Arabidopsis thaliana


text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:774-8855

text: thale cress

characteristic: common name

text: 135 Mb

characteristic: estimated size

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

characteristic: plant developmental stage

text: leaves

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF PERPIGNAN/CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:774-8856

text: thale cress

text: 135 Mb

text: France

text: Arabidopsis thaliana

characteristic: plant growth medium

text: leaves

characteristic: plant structure

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:774-8857

characteristic: Submitter Id

text: thale cress

text: 135 Mb

text: France

text: Arabidopsis thaliana

text: leaves

characteristic: ploidy

text: Arabidopsis thaliana

characteristic: title


text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:774-8858

characteristic: collection date

text: thale cress

characteristic: common name

text: 135 Mb

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

text: leaves

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF PERPIGNAN/CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-24-11-2022-16:01:14:774-8859

text: thale cress

text: 135 Mb

text: France

text: Arabidopsis thaliana

characteristic: organism

characteristic: plant developmental stage

text: leaves

text: Arabidopsis thaliana