characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Asticcacaulis sp.

text: uncultured Asticcacaulis sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144884_bin.8_CONCOCT_v1.1_MAG

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144885 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: USA

unit: DD

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Methylophilus sp.

characteristic: organism

text: Dinitrogen fixation by Nostoc azollae residing in specialized leaf pockets supports prolific growth of the floating fern Azolla filiculoides. To evaluate contributions by further microorganisms, the A. filiculoides microbiome and nitrogen metabolism in bacteria persistently associated with Azolla ferns were characterized. A metagenomic approach was taken complemented by nitrogen isotope determinations of fern biomass and detection of N2O released. Ribosomal RNA genes in sequenced DNA of natural ferns, their enriched leaf pockets and water filtrate from the surrounding ditch established that bacteria of A. filiculoides differed entirely from surrounding water and revealed species of the order Rhizobiales. Analyses of seven cultivated Azolla species confirmed persistent association with Rhizobiales. Two distinct near full-length Rhizobiales genomes were identified from leaf-pocket enriched samples from ditch grown A. filiculoides. Annotation revealed genes for denitrification but not N2-fixation. 15N2 incorporation was active in ferns with N. azollae but not in ferns without. N2O was not detectably released from surface sterilized ferns with the Rhizobiales. N2-fixing N. azollae, we conclude, dominated the microbiome of Azolla ferns. The persistent but less abundant heterotrophic Rhizobiales bacteria possibly contributed to lowering O2 levels in leaf pockets but did not release detectable amounts of the strong greenhouse gas N2O.

characteristic: project name

characteristic: sample derived from

text: uncultured Methylophilus sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144885_bin.38_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144886 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Ecuador

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Bradyrhizobium sp.

text: uncultured Bradyrhizobium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144886_bin.2_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144887 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Ecuador

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Asticcacaulis sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Asticcacaulis sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144887_bin.25_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144888 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Ecuador

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Rhizobium sp.

text: uncultured Rhizobium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144888_bin.22_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144891 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Sudan

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Trichormus sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Trichormus sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144891_bin.1_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144895 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Brazil

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Caulobacter sp.

text: uncultured Caulobacter sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144895_bin.21_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144896 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Brazil

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Chitinophaga sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Chitinophaga sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144896_bin.29_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144898 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Uruguay

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Methylobacillus sp.

text: uncultured Methylobacillus sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144898_bin.23_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144899 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Uruguay

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: Trichormus azollae

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Trichormus azollae

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144899_bin.1_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Uruguay

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Bradyrhizobium sp.

text: Dinitrogen fixation by Nostoc azollae residing in specialized leaf pockets supports prolific growth of the floating fern Azolla filiculoides. To evaluate contributions by further microorganisms, the A. filiculoides microbiome and nitrogen metabolism in bacteria persistently associated with Azolla ferns were characterized. A metagenomic approach was taken complemented by nitrogen isotope determinations of fern biomass and detection of N2O released. Ribosomal RNA genes in sequenced DNA of natural ferns, their enriched leaf pockets and water filtrate from the surrounding ditch established that bacteria of A. filiculoides differed entirely from surrounding water and revealed species of the order Rhizobiales. Analyses of seven cultivated Azolla species confirmed persistent association with Rhizobiales. Two distinct near full-length Rhizobiales genomes were identified from leaf-pocket enriched samples from ditch grown A. filiculoides. Annotation revealed genes for denitrification but not N2-fixation. 15N2 incorporation was active in ferns with N. azollae but not in ferns without. N2O was not detectably released from surface sterilized ferns with the Rhizobiales. N2-fixing N. azollae, we conclude, dominated the microbiome of Azolla ferns. The persistent but less abundant heterotrophic Rhizobiales bacteria possibly contributed to lowering O2 levels in leaf pockets but did not release detectable amounts of the strong greenhouse gas N2O.

text: uncultured Bradyrhizobium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144899_bin.10_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Uruguay

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144899_bin.24_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: domestic pig

characteristic: common name

text: DNA

characteristic: description

text: adult

text: home-made protocol

text: Feve K.

characteristic: host scientific name

text: GenPhySE

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Male

characteristic: sex

text: LargeWhite

characteristic: strain

text: blood

characteristic: title


text: INRAE

text: public

text: domestic pig

text: DNA

text: adult

text: home-made protocol

text: Feve K.

text: GenPhySE

text: Sus scrofa domesticus

characteristic: organism

text: Sus scrofa domesticus

text: Male

text: LargeWhite

text: LWD

text: blood


characteristic: ENA-CHECKLIST

text: INRAE

text: public

text: domestic pig

text: DNA

text: adult

text: home-made protocol

text: Feve K.

text: GenPhySE

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: Male

text: LargeWhite

text: LWS

text: blood


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

tag: Namespace:UNIVERSITY OF PERPIGNAN/CNRS

characteristic: collection date

text: thale cress

text: 135 Mb

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Seeds were first germinated at 20 °C, and after 4 to 7 days, seedlings were either transferred to 27 °C under short day (for hypocotyl length assay) or at 37°C under long day condition (for plant survival assay). Heat treatments were done by transferring plants in pre-heated MLR-352 Plant Growth Chambers (PHCbi, Sanyo).

characteristic: isolation and growth condition

characteristic: number of replicons

text: Arabidopsis thaliana

characteristic: plant developmental stage

text: in vitro culture MS 1/2, 0.5% plant agar

characteristic: plant growth medium

text: leaves

characteristic: plant structure

characteristic: ploidy

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094164 of study ERP024470.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: Thalassobaculum salexigens

text: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.

characteristic: project name

characteristic: sample derived from

text: Thalassobaculum salexigens

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094164_bin.42_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: Marinoscillum furvescens

characteristic: organism

text: Marinoscillum furvescens

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094164_bin.5_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: Phaeobacter italicus

characteristic: project name

characteristic: sample derived from

text: Phaeobacter italicus

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094164_bin.52_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094164_bin.56_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Ectothiorhodospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094164_bin.60_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: Devosia lucknowensis

characteristic: organism

text: Devosia lucknowensis

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094164_bin.7_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Rhodobacteraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Rhodobacteraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094164_bin.71_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Cryomorphaceae bacterium

characteristic: organism

text: uncultured Cryomorphaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094164_bin.83_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Parasphingopyxis sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Parasphingopyxis sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094164_bin.85_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094165 of study ERP024470.

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Bacteroidetes bacterium

characteristic: organism

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094165_bin.0_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094166 of study ERP024470.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Owenweeksia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Owenweeksia sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094166_bin.13_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Cytophagales bacterium

characteristic: organism

text: uncultured Cytophagales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094166_bin.133_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Rubritalea sp.

text: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.

characteristic: project name

characteristic: sample derived from

text: uncultured Rubritalea sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094166_bin.135_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Verrucomicrobiales bacterium

characteristic: organism

text: uncultured Verrucomicrobiales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094166_bin.15_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Oligoflexia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Oligoflexia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094166_bin.32_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Loktanella sp.

characteristic: organism

text: uncultured Loktanella sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094166_bin.67_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Bacteroidetes bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094166_bin.73_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094167 of study ERP024470.

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Maritalea sp.

characteristic: organism

text: uncultured Maritalea sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094167_bin.106_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Nitrospirae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrospirae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094167_bin.119_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Oceanospirillaceae bacterium

characteristic: organism

text: uncultured Oceanospirillaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094167_bin.125_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Kiloniella sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Kiloniella sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094167_bin.33_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Chlorobi bacterium

characteristic: organism

text: uncultured Chlorobi bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094167_bin.41_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: Pseudophaeobacter arcticus

characteristic: project name

characteristic: sample derived from

text: Pseudophaeobacter arcticus

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094167_bin.47_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Flavobacteriales bacterium

characteristic: organism

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094167_bin.5_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Pseudoalteromonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudoalteromonas sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094167_bin.51_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Paraglaciecola sp.

characteristic: organism

text: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.

text: uncultured Paraglaciecola sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094167_bin.68_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Lacinutrix sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lacinutrix sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094167_bin.69_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Flavobacteriales bacterium

characteristic: organism

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094167_bin.72_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094168 of study ERP024470.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Cryomorphaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Cryomorphaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094168_bin.125_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Cellvibrionales bacterium

characteristic: organism

text: uncultured Cellvibrionales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094168_bin.147_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Glaciecola sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Glaciecola sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094168_bin.148_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Rickettsiales bacterium

characteristic: organism

text: uncultured Rickettsiales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094168_bin.50_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094169 of study ERP024470.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Amphritea sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Amphritea sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094169_bin.10_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094169_bin.119_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Oceanobacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Oceanobacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094169_bin.132_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Verrucomicrobia bacterium

characteristic: organism

text: uncultured Verrucomicrobia bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094169_bin.138_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Sulfitobacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sulfitobacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094169_bin.142_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Epsilonproteobacteria bacterium

characteristic: organism

text: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094169_bin.49_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Spirochaetia bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Spirochaetia bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094169_bin.57_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Sphingomonadales bacterium

characteristic: organism

text: uncultured Sphingomonadales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094169_bin.63_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Aequorivita sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Aequorivita sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094169_bin.76_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Desulfobacterium sp.

characteristic: organism

text: uncultured Desulfobacterium sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094169_bin.96_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured archaeon

characteristic: project name

characteristic: sample derived from

text: uncultured archaeon

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094169_bin.99_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094170 of study ERP024470.

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Leptolyngbya sp.

characteristic: organism

text: uncultured Leptolyngbya sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094170_bin.12_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Roseicyclus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Roseicyclus sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094170_bin.21_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Parvularculaceae bacterium

characteristic: organism

text: uncultured Parvularculaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094170_bin.26_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094170_bin.27_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Cytophagaceae bacterium

characteristic: organism

text: uncultured Cytophagaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094170_bin.42_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Solirubrobacterales bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094170_bin.5_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: Sinimarinibacterium flocculans

characteristic: organism

text: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.

text: Sinimarinibacterium flocculans

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094170_bin.52_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Sinobacteraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Sinobacteraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094170_bin.90_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Labrenzia sp.

characteristic: organism

text: uncultured Labrenzia sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094170_bin.95_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094171 of study ERP024470.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Cytophagaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Cytophagaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.105_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Saprospirales bacterium

characteristic: organism

text: uncultured Saprospirales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.112_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Opitutaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.127_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Flavobacteriaceae bacterium

characteristic: organism

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.138_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Pseudomonadales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonadales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.143_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Oceanospirillales bacterium

characteristic: organism

text: uncultured Oceanospirillales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.15_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Rhodobacteraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Rhodobacteraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.20_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Cyclobacteriaceae bacterium

characteristic: organism

text: uncultured Cyclobacteriaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.30_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Sulfitobacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Sulfitobacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.31_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Algoriphagus sp.

characteristic: organism

text: uncultured Algoriphagus sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.34_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.37_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Flavobacteriaceae bacterium

characteristic: organism

text: In this study, the antibiotic resistance genes (ARGs) profiles and the microbial community structure of the two typical aquacultures farms were studied by metagenomics approach. Based on the blast results upon structured ARDB, 50 ARGs subtypes belonging to 21 ARGs types were identiﬁed in the two farms.

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.4_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Lentibacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lentibacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.5_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2094171 of study ERP024470.

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Flavobacteriales bacterium

characteristic: organism

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.53_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: China

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Caulobacteraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Caulobacteraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2094171_bin.56_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Bacteroidetes bacterium

characteristic: organism

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2094171_bin.62_CONCOCT_v1.1_MAG

characteristic: title