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text: Rosalind Franklin Laboratory

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text: not provided

characteristic: collector name

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: Northern Ireland

text: Human

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: not provided

characteristic: collector name

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: organism

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cryptobiotix

text: public

characteristic: SRA accession

text: Human gut

text: human

characteristic: common name

text: Fermentation sample

text: Homo sapiens

text: Homo sapiens

characteristic: title


SLBT

text: UNIVERSITY OF BOLOGNA

characteristic: INSDC center name

text: public

text: SLBT

tag: Namespace:UNIVERSITY OF BOLOGNA

characteristic: Submitter Id

text: human

text: Dental calculus from SLB individual

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: dental calculus

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex

text: SLBT


text: University of Tartu, Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik, Diana Pilvar

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: active surveillance not initiated by an outbreak

text: PCR tiled amplicon WGS of SARS-Cov-2, monitoring random samples from active surveillance


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

text: Estonia

text: Western Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism

characteristic: sample capture status

characteristic: title


text: University of Tartu, Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

text: Estonia

text: Southern Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate


text: University of Tartu, Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

text: Western Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female


text: University of Tartu, Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

text: Estonia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

text: Central Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

text: Central Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

text: Estonia

text: North-Eastern Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collector name

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

text: Estonia

text: Southern Estonia

characteristic: geographic location (region and locality)

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Western Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Northern Estonia

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

text: Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: description

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: female


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

characteristic: collector name

text: Estonia

text: Western Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: description

text: Estonia

text: North-Eastern Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Southern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: collector name

characteristic: description

text: Estonia

text: Southern Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate


characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: collecting institution

text: Estonia

text: Central Estonia

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.6.1 @ Galaxy

characteristic: Submitter Id

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: North-Eastern Estonia

characteristic: geographic location (region and locality)

characteristic: host age

text: human

text: not provided

text: Homo sapiens

text: male


characteristic: External Id

text: FZB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WGS of M. tuberculosis complex strains

characteristic: description

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ENA-CHECKLIST

text: James Hutton Institute

text: public

tag: Namespace:James Hutton Institute

text: potato

characteristic: common name

text: Illumina RenSeq of cultivar TIGER

text: Solanum tuberosum

characteristic: organism

text: Solanum tuberosum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: James Hutton Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: potato

text: Illumina RenSeq of cultivar Novano

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of cultivar Karelia

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of breeding line 16 MC 173 A2

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of breeding line 16 MC 234 A19

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of breeding line 16 MC 174 A108

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of breeding line 16 MC 233 A1

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of breeding line 16 MC 219 A24

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of cultivar Alicante

text: Solanum tuberosum

text: Solanum tuberosum


text: James Hutton Institute

text: public

text: potato

text: Illumina RenSeq of cultivar Vales Everest

text: Solanum tuberosum

text: Solanum tuberosum


text: public

tag: Namespace:Institute of Applied Biosciences, Centre for research and Technology Hellas

text: vaginal

text: human metagenome

text: human metagenome


text: Institute of Applied Biosciences, Centre for research and Technology Hellas

text: public

text: vaginal

text: human metagenome

text: human metagenome


text: public

text: cervical

text: human metagenome

text: human metagenome


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:564-6291

tag: Namespace:Lorraine University

text: human

text: SKOV3 cells untreated

text: Homo sapiens

text: Homo sapiens

text: SKOV3 NT-1


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:564-6292

text: human

text: SKOV3 cells cisPt-treated 24h

text: Homo sapiens

text: Homo sapiens

text: SKOV3 cis24h-1


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:564-6293

text: human

text: SKOV3 cells untreated

text: Homo sapiens

text: Homo sapiens

text: SKOV3 NT-2


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:564-6294

text: human

text: SKOV3 cells cisPt-treated 24h

text: Homo sapiens

text: Homo sapiens

text: SKOV3 cis24h-2


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:565-6295

text: human

text: SKOV3 cells untreated

text: Homo sapiens

text: Homo sapiens

text: SKOV3 NT-1


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:565-6296

text: human

text: SKOV3 cells untreated

text: Homo sapiens

text: Homo sapiens

text: SKOV3 NT-2


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:565-6297

text: human

text: SKOV3 cells untreated

text: Homo sapiens

text: Homo sapiens

text: SKOV3 NT-3


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:565-6298

text: human

text: SKOV3 cells cisPt-treated 24h

text: Homo sapiens

text: Homo sapiens

text: SKOV3 cis24h-1


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:565-6299

text: human

text: SKOV3 cells cisPt-treated 24h

text: Homo sapiens

text: Homo sapiens

text: SKOV3 cis24h-2


text: Lorraine University

text: public

text: ena-SAMPLE-TAB-06-02-2023-20:27:29:565-6300

text: human

text: SKOV3 cells cisPt-treated 24h

text: Homo sapiens

text: Homo sapiens

text: SKOV3 cis24h-3


characteristic: GISAID Accession ID

text: public

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Lea Stauber, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_01/2023

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_07/2023

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_14/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_22/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_16/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_24/2023


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_23/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_03/2023

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_02/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_06/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_09/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_25/2023


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Lea Stauber, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_20/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_04/2023

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_15/2023

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_13/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_11/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_10/2023


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_19/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_18/2023

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_05/2023


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-230130_os_21/2023

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_17/2023

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Stefan Neuenschwander, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Lea Stauber, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-230130_os_08/2023


characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:INSTITUT PASTEUR

text: Norwegian salmon fillet

characteristic: description

text: France

text: CLIP CLIP 2019/00002

characteristic: isolate

text: Food

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes CLIP 2019/00002


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE

characteristic: Submitter Id

text: Acinetobacter baumanii isolate

text: United Kingdom

text: diseased

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: Culture

text: Hospital patient

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE

characteristic: INSDC center name

text: public

text: Acinetobacter baumanii isolate

text: United Kingdom

text: diseased

text: Homo sapien

text: Culture

text: Hospital patient

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


text: IBE(CSIC-UNIVERSITAT POMPEU FABRA)

text: public

text: western gorilla

characteristic: common name

text: Gorilla gorilla

text: Gorilla gorilla


characteristic: ENA-LAST-UPDATE

text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

tag: Namespace:Yeast Genomics Lab@Nova, UNL, Portugal

text: baker's yeast

text: Spoilage yeast isolated from bottled New England IPA beer

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

characteristic: INSDC first public

text: public

text: baker's yeast

text: Spoilage yeast isolated from bottled brut IPA beer

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

characteristic: INSDC last update

text: public

text: baker's yeast

text: Spoilage yeast isolated from bottled coconut pumpkin stout beer

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: baker's yeast

text: Spoilage yeast isolated from bottled blonde ale beer

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: baker's yeast

text: Spoilage yeast isolated from bottled IPA beer

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: baker's yeast

text: Isolated form traditional beverage (Khadi)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: baker's yeast

text: Isolated from amarula fruits (Sclerocarya birrea)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: baker's yeast

text: Commercial strain (Ale)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 2 - Diastaticus


text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: baker's yeast

text: Commercial strain (Ale)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Beer 1


Challenge Red

text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: Challenge Red

text: baker's yeast

text: Commercial strain

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Wine


ZP 1216

text: Yeast Genomics Lab@Nova, UNL, Portugal

text: public

text: ZP 1216

text: baker's yeast

text: Isolated from soil from fig tree

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Mediterranean Oaks


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: not provided

characteristic: common name

text: Portugal

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

text: hCoV-19/Ireland/D-NVRL-S23IRL00003512/2023

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: DEPT OF MICROBIOLOGY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:DEPT OF MICROBIOLOGY

characteristic: Submitter Id

characteristic: collection date

text: Klebsiella pneumoniae A1746/22-Greece

text: Greece

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

text: not provided

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not provided

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: collection date

text: not provided

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: Scotland

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: not provided

text: United Kingdom

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

characteristic: collection date

text: not provided

text: United Kingdom

text: England

text: Human

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: not provided

characteristic: collector name

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Laboratory Plymouth

text: not provided

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: host common name

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

text: Zuid-Holland

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

characteristic: isolate

text: Lysis

characteristic: isolation source host-associated

characteristic: organism

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: Lysis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat/Nasal

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: Throat/Nasal

characteristic: isolation source host-associated

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Utrecht

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

text: Throat/Nasal

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Utrecht

text: Human

text: not collected

text: Homo sapiens

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: Throat

characteristic: isolation source host-associated

characteristic: organism


characteristic: ENA-LAST-UPDATE

text: Dutch COVID-19 response team

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Drenthe

text: Human

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

text: Throat/Nasal

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collection date

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Zeeland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat/Nasal

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF OXFORD

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF OXFORD

characteristic: Submitter Id

text: University of Oxford

characteristic: collecting institution

text: Modernising Medical Microbiology

characteristic: collector name

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

text: not collected

text: Homo sapien

text: not collected

text: not collected

text: RT-PCR

characteristic: influenza test method

text: P

characteristic: influenza test result

text: Influenza A virus

characteristic: organism

text: Influenza A virus

text: Influenza genome sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: DEPT OF MICROBIOLOGY

characteristic: INSDC center name

text: public

characteristic: collection date

text: Klebsiella pneumoniae A3939/20-Greece

characteristic: description

text: Greece

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

text: not provided

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not provided

characteristic: serovar

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: DEPT OF MICROBIOLOGY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella pneumoniae A4908/20-Greece

text: Greece

text: diseased

text: homo sapiens

text: blood

text: not provided

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DEPT OF MICROBIOLOGY

text: public

text: Klebsiella pneumoniae C4112/18-Greece

text: Greece

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapiens

text: rectal swab

text: not provided

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not provided


characteristic: External Id

text: DEPT OF MICROBIOLOGY

characteristic: INSDC center name

text: public

characteristic: collection date

text: Klebsiella pneumoniae Z852/19-Greece

characteristic: description

text: Greece

text: diseased

text: homo sapiens

text: rectal swab

text: not provided

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not provided


text: Portugal

characteristic: Country

text: yes

text: public

text: clinical

characteristic: Source

text: Homo sapiens

characteristic: host scientific name

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-LAST-UPDATE

text: University of Gothenburg

text: public

tag: Namespace:University of Gothenburg

text: human

characteristic: common name

text: Naked DNA from A375 cells exposed to 1000 J UVC radiation. Whole Genome

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: University of Copenhagen

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Copenhagen

text: gut metagenome

text: gut metagenome


characteristic: ENA-CHECKLIST

text: IHU - Mediterranee Infection

text: public

characteristic: SRA accession

tag: Namespace:IHU - Mediterranee Infection

characteristic: Submitter Id

text: Ligilactobacillus massiliensis was isolated from stool in a healthy patient as part of a culturomics study aimaing at cultivating all bacteria in human feces.

text: stool

text: Ligilactobacillus sp. Marseille-Q7487

text: Ligilactobacillus sp. Marseille-Q7487

characteristic: strain

text: Ligilactobacillus massiliensis genome


tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IHU - Mediterranee Infection

text: public

text: Lancefieldella massiliensis was isolated from stool in a Nash patient as part of a culturomics study aimaing at cultivating all bacteria in human feces.

text: stool

text: Lancefieldella sp. Marseille-Q7238

characteristic: organism

text: Lancefieldella sp. Marseille-Q7238

text: Lancefieldella massiliensis genome


characteristic: INSDC center name

text: public

tag: Namespace:Key Laboratory of Environmental and Applied Microbiology, CAS

text: human

characteristic: broad-scale environmental context

characteristic: collection date

text: oral

characteristic: environmental medium

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: oral

characteristic: local environmental context

text: gut metagenome

text: mucosa

characteristic: project name

text: gut metagenome

text: mucosa


characteristic: ENA-LAST-UPDATE

text: Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: oral

text: China

text: oral

text: gut metagenome

text: mucosa

text: gut metagenome

text: mucosa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

tag: Namespace:Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Ibadan

characteristic: Submitter Id

text: Cameroon

text: Yaounde

characteristic: geographic location (region and locality)

text: Escherichia coli

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Bacterial genome


characteristic: External Id

text: Global Health Research Unit for the Genomic Surveillance of Antimicrobial Resistance, Ibadan

characteristic: INSDC center name

text: public

text: Cameroon

text: Yaounde

text: Acinetobacter oleivorans

text: Acinetobacter oleivorans

characteristic: organism

text: Acinetobacter oleivorans

text: Bacterial genome


text: public

text: Cameroon

characteristic: geographic location (country and/or sea)

text: Yaounde

text: Enterobacter asburiae

text: Enterobacter asburiae

text: Enterobacter asburiae

text: Bacterial genome


text: public

text: Cameroon

text: Yaounde

text: Enterobacter hormaechei

text: Enterobacter hormaechei

text: Enterobacter hormaechei

text: Bacterial genome


text: public

text: Cameroon

text: Yaounde

text: Enterobacter kobei

text: Enterobacter kobei

text: Enterobacter kobei

text: Bacterial genome


text: public

text: Cameroon

text: Yaounde

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Bacterial genome


text: public

text: Cameroon

text: Yaounde

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Bacterial genome


text: public

text: Cameroon

text: Yaounde

text: Klebsiella variicola

text: Klebsiella variicola

text: Klebsiella variicola

text: Bacterial genome


text: public

text: Cameroon

text: Yaounde

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Bacterial genome


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Pascal Schläpfer, Rainer Gosert, Klaudia Nägele, Svenia Schmid, Karoline Leuzinger, Hans H Hirsch

characteristic: collector name

text: Switzerland

text: BL

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-UHB-USB_2023_01_30_40c42e63/2023

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Basel

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-USB_2023_01_30_6d309523/2023

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: title