characteristic: External Id

text: NVRL

text: public

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wicklow

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

text: hCoV-19/Ireland/WW-NVRL-S22IRL00471091/2022

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

unit: DD

text: Europe / Ireland / Wicklow

unit: year

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: hCoV-19/Ireland/WW-NVRL-S22IRL00469751/2022

characteristic: virus identifier


characteristic: External Id

text: NVRL

text: public

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00470626/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NVRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Wexford

text: human

text: not provided

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: sample capture status

text: hCoV-19/Ireland/WX-NVRL-S22IRL00470627/2022


characteristic: External Id

text: NVRL

text: public

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Wexford

characteristic: geographic location (region and locality)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host disease outcome

text: not provided

text: Homo sapiens

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: isolation source host-associated

characteristic: organism

text: hCoV-19/Ireland/WX-NVRL-S22IRL00470630/2022

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: not provided

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Danish Campylobacter surveillance strain

characteristic: title


characteristic: External Id

text: SSI

text: public

characteristic: Submitter Id

text: Denmark

text: not collected

text: Homo sapiens

text: not provided

text: Campylobacter coli

text: Campylobacter coli


text: ELKH BRC

text: public

tag: Namespace:ELKH BRC

text: sequences of antibiotic resistance gene from the metagenomes of the human gut and soil samples and from the genomes of different pathogenic bacterial strains

characteristic: description

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: SEAWINES

text: plant sample from greenhouse treated with Rugulopteryx extract 1

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant detritus (non-saline)

text: cropland biome

text: plant-associated habitat

text: leaf

text: plant-associated

text: Spain:Araba:Arkaute

text: Vitis vinifera

text: wine grape

text: metagenome

characteristic: latitude

characteristic: longitude

text: plant metagenome

text: SEAWINES

text: leaves

text: plant metagenome

text: Holistic understanding of the response of grapevines to seaweed extracts foliar application

text: Rugulopteryx extract 1

characteristic: treatment


characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SEAWINES

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant detritus (non-saline)

text: cropland biome

text: plant-associated habitat

text: leaf

text: plant-associated

text: Spain:Araba:Arkaute

text: Vitis vinifera

text: wine grape

text: metagenome

text: plant metagenome

text: SEAWINES

text: leaves

text: plant metagenome

text: Ulva extract 1


text: UCSDMI

text: public

characteristic: SRA accession

text: SEAWINES

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant detritus (non-saline)

text: cropland biome

text: plant-associated habitat

text: leaf

text: plant-associated

text: Spain:Araba:Arkaute

text: Vitis vinifera

characteristic: host scientific name

text: wine grape

text: metagenome

text: plant metagenome

text: SEAWINES

text: leaves

text: plant metagenome


text: UCSDMI

text: public

text: SEAWINES

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant detritus (non-saline)

text: cropland biome

text: plant-associated habitat

text: leaf

text: plant-associated

text: Spain:Araba:Arkaute

text: Vitis vinifera

text: wine grape

text: metagenome

text: plant metagenome

text: SEAWINES

text: leaves

text: plant metagenome

characteristic: title

text: Rugulopteryx extract 2


characteristic: External Id

text: UCSDMI

text: public

text: SEAWINES

text: Host-associated

text: Host-associated (non-saline)

text: Plant (non-saline)

text: Plant detritus (non-saline)

text: cropland biome

text: plant-associated habitat

text: leaf

text: plant-associated

text: Spain:Araba:Arkaute

text: Vitis vinifera

text: wine grape

text: metagenome

text: plant metagenome

text: SEAWINES

text: leaves

text: plant metagenome

text: Ulva extract 2


text: UCSDMI

text: public

characteristic: Submitter Id

text: SEAWINES

text: Rugulopteryx extract 1

text: Host-associated

text: Host-associated (saline)

text: Plant (saline)

text: Plant detritus (saline)

text: cropland biome

text: plant-associated habitat

text: algal material

text: plant-associated

text: Spain:Araba:Arkaute

text: Rugulopteryx okamurae

text: brown algae

text: metagenome

text: algae metagenome

text: SEAWINES

text: algal material

text: algae metagenome


text: UCSDMI

text: public

text: SEAWINES

text: Rugulopteryx extract 2

characteristic: description

text: Host-associated

text: Host-associated (saline)

text: Plant (saline)

text: Plant detritus (saline)

text: cropland biome

text: plant-associated habitat

text: algal material

text: plant-associated

text: Spain:Cadiz

text: Rugulopteryx okamurae

text: brown algae

text: metagenome

text: algae metagenome

text: SEAWINES

text: algal material

text: algae metagenome


text: UCSDMI

text: public

text: SEAWINES

text: Ulva ohnoi extract 1

text: Host-associated

text: Host-associated (saline)

text: Plant (saline)

text: Plant detritus (saline)

text: cropland biome

text: plant-associated habitat

text: algal material

text: plant-associated

text: Spain:Huelva

text: Ulva ohnoi

text: green algae

text: metagenome

text: algae metagenome

characteristic: organism

text: SEAWINES

text: algal material

text: algae metagenome


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: SEAWINES

text: Ulva ohnoi extract 2

text: Host-associated

text: Host-associated (saline)

text: Plant (saline)

text: Plant detritus (saline)

text: cropland biome

text: plant-associated habitat

text: algal material

text: plant-associated

text: Spain:Huelva

text: Ulva ohnoi

text: green algae

text: metagenome

text: algae metagenome

text: SEAWINES

text: algal material

text: algae metagenome


characteristic: ENA-FIRST-PUBLIC

text: public

text: Mouse embryonic stem cells

text: house mouse

characteristic: common name

text: stranded whole transcriptome RNA sequencing followed by Illumina single-end sequencing on mouse Embryonic Stem Cells

text: Mus musculus

text: Mus musculus


text: UniKlinik Aachen

text: public

tag: Namespace:UniKlinik Aachen

text: house mouse

text: Bulk-RNASeq of PBMC cocultured with WT or Cxcl4KO platelets

text: Mus musculus

text: Mus musculus


text: UniKlinik Aachen

text: public

text: house mouse

text: snRNAseq of kidneys after IRI or Sham Surgery in WT and Cxcl4KO mice

text: Mus musculus

text: Mus musculus


text: Chongqing University Cancer Hospital

text: public

tag: Namespace:Chongqing University Cancer Hospital

text: Yes

characteristic: Was the PDX model humanised?

text: human

text: primary cancer

text: tumor

characteristic: engrafted tumor collection site

characteristic: engrafted tumor sample passage

characteristic: engraftment host strain name

text: Homo sapiens

text: not provided

characteristic: patient age at collection of tumor

text: Female

characteristic: patient sex

characteristic: patient tumor diagnosis at time of collection

text: Primary Neoplasm

characteristic: patient tumor type

text: tissue fragment

characteristic: sample material

text: Patient tumor

characteristic: sample origin

text: Homo sapiens

characteristic: sample taxon name

characteristic: sample unique ID

text: Homo sapiens

text: breast cancer


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHAS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: PHAS

characteristic: broker name

text: Public Health Agency of Sweden

characteristic: collection date

text: Clinical isolate from patient with invasive disease

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: clinical isolate

characteristic: isolate

text: Clinical sample

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

text: public

text: gnotobiotic

characteristic: broad-scale environmental context

text: Seed

text: sterile cotton and water

characteristic: environmental medium

text: 12 strains

characteristic: experimental factor

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host genotype

text: metagenome

characteristic: investigation type

text: sterile tube

characteristic: local environmental context

text: plant metagenome

characteristic: organism

text: Transmission of synthetic seed bacterial communities to radish seedlings: impact on microbiota assembly and seedling phenotype

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: gyrB gene

characteristic: target gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gnotobiotic

characteristic: collection date

text: Inoculum

characteristic: description

text: sterile cotton and water

text: 12 strains

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

text: public

text: gnotobiotic

characteristic: broad-scale environmental context

text: Seed

text: sterile cotton and water

characteristic: environmental medium

text: 6 strains

characteristic: experimental factor

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host genotype

text: metagenome

characteristic: investigation type

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: gnotobiotic

text: Inoculum

text: sterile cotton and water

text: 6 strains

text: France

text: metagenome

text: sterile tube

characteristic: local environmental context

text: plant metagenome

characteristic: organism

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: gyrB gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gnotobiotic

characteristic: broad-scale environmental context

characteristic: collection date

text: Seed

characteristic: description

text: sterile cotton and water

characteristic: environmental medium

text: 8 strains

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: gnotobiotic

text: Inoculum

text: sterile cotton and water

text: 8 strains

characteristic: experimental factor

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host genotype

text: metagenome

characteristic: investigation type

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: gnotobiotic

text: Seed

text: sterile cotton and water

text: Control

text: France

text: metagenome

text: sterile tube

characteristic: local environmental context

text: plant metagenome

characteristic: organism

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: gyrB gene

characteristic: target gene

text: M


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: gnotobiotic

characteristic: broad-scale environmental context

characteristic: collection date

text: Seedling

characteristic: description

text: sterile cotton and water

characteristic: environmental medium

text: 12 strains

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: gnotobiotic

text: Seedling

text: sterile cotton and water

text: 6 strains

characteristic: experimental factor

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host genotype

text: metagenome

characteristic: investigation type

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: gnotobiotic

text: Seedling

text: sterile cotton and water

text: 8 strains

text: France

text: metagenome

text: sterile tube

characteristic: local environmental context

text: plant metagenome

characteristic: organism

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: gyrB gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: gnotobiotic

characteristic: broad-scale environmental context

characteristic: collection date

text: Seedling

characteristic: description

text: sterile cotton and water

characteristic: environmental medium

text: Control

text: France

characteristic: geographic location (country and/or sea)

text: metagenome

text: sterile tube

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

text: PT


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: gnotobiotic

text: Negative Control

text: sterile cotton and water

text: Negative Control

characteristic: experimental factor

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host genotype

text: metagenome

characteristic: investigation type

text: sterile tube

text: water

characteristic: negative control type

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

text: T

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gnotobiotic

text: Negative Control

text: sterile cotton and water

text: Negative Control

text: France

text: metagenome

text: sterile tube

characteristic: local environmental context

text: DNA extraction

text: plant metagenome

characteristic: organism

characteristic: project name

text: plant metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: gyrB gene

characteristic: target gene

text: TnegExtp


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRD

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: gnotobiotic

characteristic: broad-scale environmental context

characteristic: collection date

text: Negative Control

characteristic: description

text: sterile cotton and water

characteristic: environmental medium

text: Negative Control

characteristic: experimental factor

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: sterile tube

text: PCR

text: plant metagenome

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

text: TnegPCRp


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IRD

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gnotobiotic

text: Positive Control

text: sterile cotton and water

text: Positive Control

text: France

characteristic: geographic location (longitude)

characteristic: host genotype

text: metagenome

characteristic: investigation type

text: sterile tube

text: plant metagenome

text: mock community

characteristic: positive control type

text: plant metagenome

text: Illumina MiSeq

text: gyrB gene

text: TposPCRp

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY MEDICAL CENTER UTRECHT

text: Hybrid assemblies for which not all contigs had a circular status reported by Unicycler

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis


characteristic: GISAID Accession ID

text: public

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_16/2022

characteristic: isolate

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_12/2022

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC first public

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_73/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_52/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_44/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_33/2022

characteristic: organism


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characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_01/2022

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_10/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_15/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_02/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_61/2022

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collection date

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_45/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Infectious Diseases, Bern, Switzerland

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_63/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_39/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_42/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_06/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_50/2022

text: active surveillance not initiated by an outbreak

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_65/2022

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_53/2022

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_54/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_69/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_19/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_27/2022

characteristic: title


characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_31/2022

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_28/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_49/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-221219_os_66/2022

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-221219_os_35/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Teagasc Food Research Centre

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Teagasc Food Research Centre

characteristic: Submitter Id

text: Marine Institute, Ireland

text: human

characteristic: common name

text: FM22 prepared with SuperScript II and Kapa HiFi

characteristic: description

text: No

text: Ireland

text: faecal

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Teagasc Food Research Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: European Union Reference Laboratory (EURL) for Foodborne Viruses, National Food Agency, Hamnesplanaden 5, 753 19 Uppsala, Sweden.

text: Naturally contaminated oyster prepared with SuperScript II and Kapa HiFi, GII PCR products

text: Yes

text: Sweden

characteristic: geographic location (country and/or sea)

text: digestive tissue

text: oyster metagenome

characteristic: organism

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa HiFi, GI PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and AmpliTaq Gold, GII PCR products

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript IV and Kapa Robust, GII PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Marine Institute, Ireland

text: Technical replicate C in spiked oyster prepared with LunaScript and Kapa Robust, GI PCR product

text: Yes

text: Ireland

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: Teagasc Food Research Centre

text: public

text: Naturally contaminated oyster prepared with SuperScript II and Kapa Robust, GI PCR product

text: Yes

text: Sweden

text: digestive tissue

text: oyster metagenome

text: oyster metagenome


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4303154,ERR4303139,ERR4303140 of study ERP122587.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303154_39_40_bin.44_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4303199,ERR4303169,ERR4303195 of study ERP122587.

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Firmicutes bacterium

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Firmicutes bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4303199_69_95_bin.71_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Anaerotruncus colihominis

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: Anaerotruncus colihominis

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus colihominis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303199_69_95_bin.47_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4304450,ERR4303136,ERR4303150 of study ERP122587.

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Blautia sp.

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Blautia sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Blautia;s__

text: multi-marker approach

text: Binned metagenome: ERR4304450_3136_3150_bin.31_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Intestinimonas sp.

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Intestinimonas sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__Intestinimonas;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303199_69_95_bin.7_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Gallispira edinburgensis

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: Candidatus Gallispira edinburgensis

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__Candidatus Gallispira;s__Candidatus Gallispira edinburgensis

text: multi-marker approach

text: Binned metagenome: ERR4303199_69_95_bin.49_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Limosilactobacillus oris

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: Limosilactobacillus oris

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus oris

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303154_39_40_bin.50_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4303138,ERR4303156 of study ERP122587.

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Verrucomicrobia bacterium

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Verrucomicrobia bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__;o__;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4303138_56_bin.76_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Bacilli bacterium

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Bacilli bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4304450_3136_3150_bin.84_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Lachnospiraceae bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4304450_3136_3150_bin.32_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4304450,ERR4303136,ERR4303150 of study ERP122587.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Candidatus Coproplasma stercoripullorum

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: Candidatus Coproplasma stercoripullorum

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Coproplasma;s__Candidatus Coproplasma stercoripullorum

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4304450_3136_3150_bin.37_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Lachnospiraceae bacterium

text: multi-marker approach

text: Binned metagenome: ERR4304450_3136_3150_bin.6_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Phascolarctobacterium sp.

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Phascolarctobacterium sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303138_56_bin.42_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Clostridium sp.

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Clostridium sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__

text: multi-marker approach

text: Binned metagenome: ERR4304450_3136_3150_bin.87_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4303199,ERR4303169,ERR4303195 of study ERP122587.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Clostridia bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303199_69_95_bin.62_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4303138,ERR4303156 of study ERP122587.

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Sutterella sp.

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Sutterella sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Sutterella;s__

text: multi-marker approach

text: Binned metagenome: ERR4303138_56_bin.20_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4303154,ERR4303139,ERR4303140 of study ERP122587.

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Blautia sp.

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Blautia sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Blautia;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303154_39_40_bin.5_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4304450,ERR4303136,ERR4303150 of study ERP122587.

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: [Clostridium] spiroforme

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: [Clostridium] spiroforme

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelatoclostridium;s__[Clostridium] spiroforme

text: multi-marker approach

text: Binned metagenome: ERR4304450_3136_3150_bin.15_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Caecum

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Massilimicrobiota sp.

text: HoloFood Chicken -- MAG Catalogue data

characteristic: project name

characteristic: sample derived from

text: uncultured Massilimicrobiota sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Massilimicrobiota;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4303199_69_95_bin.75_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

text: not provided

text: CheckM

characteristic: description

text: Caecum

text: Spain

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Lachnoclostridium sp.

characteristic: organism

text: HoloFood Chicken -- MAG Catalogue data

text: uncultured Lachnoclostridium sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Lachnoclostridium;s__

text: multi-marker approach

text: Binned metagenome: ERR4303199_69_95_bin.42_MetaWRAP_v1.1_bin

characteristic: title