characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4405430 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Parasutterella excrementihominis

text: Chronic viruses such as Human Immunodeficiency Virus or Hepatitis C Virus currently afflict hundreds of millions of people worldwide. Some chronic viruses are able to colonize mucosal surfaces such as the gastrointestinal tract (GI), which act as barrier tissues that allow selective interaction of the host’s mucosal immune system with environmental factors such as microbiota, food antigens or pathogens. Gut mucosal alterations are associated with highly inflammatory conditions and diseases including obesity and autism. Although numerous correlative studies associate specific GI tract microbial species with immune parameters and health of HIV-infected individuals, mechanistic studies establishing a causal relationship between certain components of the microbiota, the anti-viral immune response, host resistance and tolerance to the infection are lacking. Here we propose to combine high- throughput microbiological techniques with immunological approaches in order to gain functional understanding on the impact of the intestinal microbiota in gut health and overall anti-viral immunity in a well-established mouse model of chronic viral infection. By doing so, we will contribute to the basic understanding on how hosts can adapt to life-long coexistence with persistent pathogens and the implications for host health

characteristic: sample derived from

text: Parasutterella excrementihominis

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Parasutterella;s__Parasutterella excrementihominis

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4405430_bin.7_metawrap_v1.3_MAG


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4405431 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Anaerotruncus colihominis

characteristic: organism

characteristic: project name

text: Anaerotruncus colihominis

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus colihominis

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4405431_bin.3_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4405433 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina HiSeq 4000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4405433_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4405436 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4405436_bin.2_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467319 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Parabacteroides goldsteinii

characteristic: sample derived from

text: Parabacteroides goldsteinii

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides goldsteinii

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467319_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467322 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

text: Chronic viruses such as Human Immunodeficiency Virus or Hepatitis C Virus currently afflict hundreds of millions of people worldwide. Some chronic viruses are able to colonize mucosal surfaces such as the gastrointestinal tract (GI), which act as barrier tissues that allow selective interaction of the host’s mucosal immune system with environmental factors such as microbiota, food antigens or pathogens. Gut mucosal alterations are associated with highly inflammatory conditions and diseases including obesity and autism. Although numerous correlative studies associate specific GI tract microbial species with immune parameters and health of HIV-infected individuals, mechanistic studies establishing a causal relationship between certain components of the microbiota, the anti-viral immune response, host resistance and tolerance to the infection are lacking. Here we propose to combine high- throughput microbiological techniques with immunological approaches in order to gain functional understanding on the impact of the intestinal microbiota in gut health and overall anti-viral immunity in a well-established mouse model of chronic viral infection. By doing so, we will contribute to the basic understanding on how hosts can adapt to life-long coexistence with persistent pathogens and the implications for host health

characteristic: project name

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467322_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467323 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467323_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467325 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Enterococcus faecalis

characteristic: organism

characteristic: project name

text: Enterococcus faecalis

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecalis

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467325_bin.5_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467327 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Mollicutes bacterium

characteristic: sample derived from

text: uncultured Mollicutes bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Tenericutes;c__Mollicutes;o__;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467327_bin.3_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Firmicutes bacterium

characteristic: organism

characteristic: project name

text: uncultured Firmicutes bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467327_bin.4_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467327_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Oscillospiraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467327_bin.7_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467332 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Chronic viruses such as Human Immunodeficiency Virus or Hepatitis C Virus currently afflict hundreds of millions of people worldwide. Some chronic viruses are able to colonize mucosal surfaces such as the gastrointestinal tract (GI), which act as barrier tissues that allow selective interaction of the host’s mucosal immune system with environmental factors such as microbiota, food antigens or pathogens. Gut mucosal alterations are associated with highly inflammatory conditions and diseases including obesity and autism. Although numerous correlative studies associate specific GI tract microbial species with immune parameters and health of HIV-infected individuals, mechanistic studies establishing a causal relationship between certain components of the microbiota, the anti-viral immune response, host resistance and tolerance to the infection are lacking. Here we propose to combine high- throughput microbiological techniques with immunological approaches in order to gain functional understanding on the impact of the intestinal microbiota in gut health and overall anti-viral immunity in a well-established mouse model of chronic viral infection. By doing so, we will contribute to the basic understanding on how hosts can adapt to life-long coexistence with persistent pathogens and the implications for host health

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467332_bin.5_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467334 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Muribaculaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467334_bin.4_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467335 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467335_bin.6_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467336 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Alistipes sp.

characteristic: organism

characteristic: project name

text: uncultured Alistipes sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467336_bin.1_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467340 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467340_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Clostridia bacterium

characteristic: organism

characteristic: project name

text: uncultured Clostridia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467340_bin.6_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

text: Chronic viruses such as Human Immunodeficiency Virus or Hepatitis C Virus currently afflict hundreds of millions of people worldwide. Some chronic viruses are able to colonize mucosal surfaces such as the gastrointestinal tract (GI), which act as barrier tissues that allow selective interaction of the host’s mucosal immune system with environmental factors such as microbiota, food antigens or pathogens. Gut mucosal alterations are associated with highly inflammatory conditions and diseases including obesity and autism. Although numerous correlative studies associate specific GI tract microbial species with immune parameters and health of HIV-infected individuals, mechanistic studies establishing a causal relationship between certain components of the microbiota, the anti-viral immune response, host resistance and tolerance to the infection are lacking. Here we propose to combine high- throughput microbiological techniques with immunological approaches in order to gain functional understanding on the impact of the intestinal microbiota in gut health and overall anti-viral immunity in a well-established mouse model of chronic viral infection. By doing so, we will contribute to the basic understanding on how hosts can adapt to life-long coexistence with persistent pathogens and the implications for host health

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467340_bin.8_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467344 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Eubacterium sp.

characteristic: organism

characteristic: project name

text: uncultured Eubacterium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467344_bin.4_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467346 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Porphyromonadaceae bacterium

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467346_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467349 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Bacteroidales bacterium

characteristic: organism

characteristic: project name

text: uncultured Bacteroidales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467349_bin.7_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467350 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Oscillospiraceae bacterium

characteristic: sample derived from

text: uncultured Oscillospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467350_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: Akkermansia muciniphila

characteristic: organism

characteristic: project name

text: Akkermansia muciniphila

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia;s__Akkermansia muciniphila

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467350_bin.7_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Bacteroidales bacterium

text: Chronic viruses such as Human Immunodeficiency Virus or Hepatitis C Virus currently afflict hundreds of millions of people worldwide. Some chronic viruses are able to colonize mucosal surfaces such as the gastrointestinal tract (GI), which act as barrier tissues that allow selective interaction of the host’s mucosal immune system with environmental factors such as microbiota, food antigens or pathogens. Gut mucosal alterations are associated with highly inflammatory conditions and diseases including obesity and autism. Although numerous correlative studies associate specific GI tract microbial species with immune parameters and health of HIV-infected individuals, mechanistic studies establishing a causal relationship between certain components of the microbiota, the anti-viral immune response, host resistance and tolerance to the infection are lacking. Here we propose to combine high- throughput microbiological techniques with immunological approaches in order to gain functional understanding on the impact of the intestinal microbiota in gut health and overall anti-viral immunity in a well-established mouse model of chronic viral infection. By doing so, we will contribute to the basic understanding on how hosts can adapt to life-long coexistence with persistent pathogens and the implications for host health

characteristic: sample derived from

text: uncultured Bacteroidales bacterium

text: Illumina NovaSeq 6000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467350_bin.8_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467353 of study ERP123227.

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Muribaculaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Muribaculaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467353_bin.5_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR4467355 of study ERP123227.

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467355_bin.10_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Christensenellaceae bacterium

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Christensenellaceae;g__;s__

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467355_bin.13_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: uncultured Lachnospiraceae bacterium

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467355_bin.2_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.15.3

characteristic: assembly software

characteristic: binning parameters

text: metawrap v1.3

characteristic: binning software

text: mouse digestive system

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

text: CheckM

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: mouse gut metagenome

text: digestive tube

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Lachnospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-Assembled Genome: ERR4467355_bin.3_metawrap_v1.3_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

text: public

text: metaSPAdes v3.15.3

text: metawrap v1.3

text: mouse digestive system

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: feces

characteristic: environmental medium

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: mouse gut metagenome

text: digestive tube

characteristic: local environmental context

text: mouse gut metagenome

characteristic: metagenomic source

text: Bacteroides thetaiotaomicron

characteristic: sample derived from

text: Bacteroides thetaiotaomicron

text: Illumina NovaSeq 6000

text: The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides thetaiotaomicron

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-Assembled Genome: ERR4467355_bin.4_metawrap_v1.3_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UIT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UiT

text: Atlantic cod

text: Metagenomic sample

text: Norway

characteristic: geographic location (country and/or sea)

text: Open Ocean outside of Tromso� city fjord

characteristic: geographic location (region and locality)

text: Intestinal tract of Gadus morhua was obtained from a fish factory outside of Troms�

text: 69.85162, 18.821799

text: Gadus morhua

characteristic: organism

text: Gadus morhua

text: Mucus from the inner gastrointestinal tract

characteristic: title


text: UIT

text: public

text: UiT

text: Atlantic cod

characteristic: common name

text: Metagenomic sample

characteristic: description

text: Norway

text: 69.85162, 18.821800

text: Gadus morhua

text: Gadus morhua


text: UIT

text: public

text: UiT

text: Atlantic cod

text: Metagenomic sample

text: Norway

text: 69.85162, 18.821801

text: Gadus morhua

text: Gadus morhua


text: UIT

text: public

text: UiT

text: Atlantic cod

text: Metagenomic sample

text: Norway

text: 69.85162, 18.821802

text: Gadus morhua

text: Gadus morhua


text: UIT

text: public

text: UiT

text: Atlantic cod

text: Metagenomic sample

text: Norway

text: 69.85162, 18.821803

text: Gadus morhua

text: Gadus morhua


text: UIT

text: public

text: UiT

text: Atlantic cod

text: Metagenomic sample

text: Norway

text: 69.85162, 18.821804

text: Gadus morhua

text: Gadus morhua


text: INRAE

text: public

text: Mesophilic agricultural anaerobic digestion

characteristic: broad-scale environmental context

characteristic: collection date

text: Fattening steers manure

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Digestate liquid

characteristic: local environmental context

text: metagenome

text: DIVA

characteristic: project name

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Cattle solid and liquid manure, Pig liquid manure, waste from agro-food industry

text: France

text: Digestate liquid

text: metagenome

text: DIVA

text: metagenome


text: INRAE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Thermophilic biowaste anaerobic digestion

text: Biowaste mixed with green waste

text: France

characteristic: geographic location (country and/or sea)

text: Digestate liquid

text: metagenome

characteristic: organism

text: DIVA

text: metagenome

characteristic: title


text: INRAE

text: public

text: Mesophilic agricultural and agrifood waste anaerobic digestion

characteristic: broad-scale environmental context

characteristic: collection date

characteristic: description

text: Pig liquid manure, waste from agro-food industry

characteristic: environmental medium

text: France

characteristic: geographic location (latitude)

text: Digestate liquid

text: metagenome

text: DIVA

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRAE

text: public

text: Thermophilic organic fraction of municipal solid waste anaerobic digestion

text: Mechanically sorted organic fraction of municipal solid waste

text: France

characteristic: geographic location (longitude)

text: Digestate dry

characteristic: local environmental context

text: metagenome

text: DIVA

characteristic: project name

text: metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHU Conception (AP-HM)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:CHU Conception (AP-HM)

text: human

characteristic: common name

text: DNA

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Slovakia

characteristic: geographic location (country and/or sea)

unit: year

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: not provided

characteristic: common name

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: eSwab

text: eSwab

characteristic: description

text: not collected

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: anthropogenic environmental material

text: misc environment

text: Germany:Stadt Gottingen

text: years

text: cm

text: kg

text: University medical center Goettingen

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: metagenome

text: UMG

text: FALSE

characteristic: pseudonym

text: control swab

text: metagenome

text: control


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: TRUE

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: Germany:Stadt Gottingen

text: years

text: cm

text: kg

text: University medical center Goettingen

text: Decimal degrees

text: adult

text: Decimal degrees

text: metagenome

text: UMG

text: FALSE

text: control blank

text: metagenome

text: control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: not collected

text: TRUE

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: sterile water

text: misc environment

text: Germany:Stadt Gottingen

text: years

text: cm

text: kg

text: University medical center Goettingen

text: Decimal degrees

text: adult

text: Decimal degrees

text: metagenome

text: UMG

text: FALSE

text: control blank

text: metagenome

text: control


text: UCSDMI

text: public

text: eSwab

text: eSwab

text: not collected

text: TRUE

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: anthropogenic environmental material

text: misc environment

text: Germany:Stadt Gottingen

text: years

text: cm

text: kg

text: University medical center Goettingen

text: Decimal degrees

text: adult

text: Decimal degrees

text: metagenome

characteristic: organism

text: UMG

text: FALSE

text: control swab

text: metagenome

characteristic: title

text: control


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: no

characteristic: antidiabetics

text: no

text: no

text: yes

text: no

text: Never chronic alcohol consumption

text: yes

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: yes

text: Cyst

text: no

text: mcn

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: yes

text: yes

characteristic: fistula

text: not collected

text: no

text: yes

text: Germany:Stadt Gottingen

text: yes

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: yes

characteristic: laxatives

text: adult

text: no

text: no

text: Left resection

text: Decimal degrees

text: no

characteristic: metformin

text: no

text: no

text: yes

text: No

text: yes

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Left resection


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: More than 1 week no antibiotics

text: no

text: yes

text: no

text: no

text: yes

text: no

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: Cyst

characteristic: description

text: yes

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: yes

text: no

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: yes

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: yes

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: yes

characteristic: antidiabetics

text: no

text: no

text: no

text: no

text: not collected

text: Chronic alcohol consumption

text: no

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: yes

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: yes

characteristic: fistula

text: Intervention

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: yes

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Left resection

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Left resection


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: More than 1 month no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: Former chronic alcohol consumption

text: no

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: Cyst

text: no

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: Intervention

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

characteristic: metformin

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: yes

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: Former chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: Cyst

characteristic: description

text: no

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: no

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: yes

characteristic: antidiabetics

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: yes

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: no

characteristic: fistula

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: >20 cigarettes/day

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: More than 1 week no antibiotics

text: no

text: yes

text: no

text: no

text: yes

text: no

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: Cyst

text: yes

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: yes

text: yes

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: no

text: Left resection

text: Decimal degrees

text: yes

characteristic: metformin

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: yes

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Left resection


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: More than 6 months no antibiotics

text: no

text: yes

text: no

text: no

text: no

text: yes

text: Never chronic alcohol consumption

text: yes

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: Cyst

characteristic: description

text: yes

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: Drainage prolonged

text: no

text: yes

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Left resection

characteristic: longitude

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Left resection


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: More than 1 month no antibiotics

text: no

characteristic: antidepressant

text: no

characteristic: antidiabetics

text: no

text: no

text: no

text: no

text: not collected

text: Chronic alcohol consumption

text: yes

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: no

characteristic: fistula

text: not collected

text: no

text: yes

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: yes

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: 11-20 cigarettes/day

text: yes

text: yes

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Within last week antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: yes

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: 1-10 cigarettes/day

text: yes

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: male

text: Ceftriaxon

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Traverso


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Within last week antibiotics

text: no

text: yes

text: no

text: no

text: yes

text: yes

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

characteristic: description

text: yes

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: yes

text: no

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: yes

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: yes

text: no

text: no

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: yes

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: yes

text: rectal swab

text: human gut metagenome

text: male

text: yes

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: yes

characteristic: antidiabetics

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: yes

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: yes

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: yes

characteristic: fistula

text: Antibiotic

text: no

text: yes

text: Germany:Stadt Gottingen

text: yes

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: yes

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: yes

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: yes

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Traverso


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: yes

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: 1-10 cigarettes/day

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

characteristic: description

text: no

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: no

text: no

text: no

text: no

text: 1-10 cigarettes/day

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Traverso


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: no

characteristic: antidiabetics

text: no

text: no

text: no

text: no

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: Cyst

text: no

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: yes

characteristic: fistula

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: yes

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

characteristic: metformin

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: yes

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: yes

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: Drainage prolonged

text: no

text: yes

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: no

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Traverso


characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Currently antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

characteristic: description

text: no

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: yes

text: yes

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: female

text: Ceftriaxon, Metronidazol

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: BL

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: yes

characteristic: antidiabetics

text: no

text: no

text: no

text: yes

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: yes

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: no

characteristic: fistula

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: yes

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: No

text: yes

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: yes

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Currently antibiotics

text: no

text: yes

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: yes

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: yes

text: Antibiotic

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: yes

text: Pancreatic head resection

text: Decimal degrees

text: yes

text: no

text: no

text: no

text: 11-20 cigarettes/day

text: yes

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: yes

text: no

text: no

text: UMG

text: FALSE

text: yes

text: no

text: rectal swab

text: human gut metagenome

text: female

text: AB

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: Grade B

text: Traverso


text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

characteristic: description

text: no

text: omnivour

characteristic: diet

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: no

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

characteristic: latitude

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

characteristic: longitude

text: Decimal degrees

text: no

text: no

text: no

text: no

text: No

text: no

text: no

text: human gut metagenome

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC first public

text: public

text: More than 6 months no antibiotics

text: no

characteristic: antidepressant

text: no

characteristic: antidiabetics

text: no

text: no

text: no

text: yes

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

characteristic: diagnosis

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

characteristic: ethnicity

text: no

text: no

characteristic: fistula

text: not collected

text: no

text: no

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

text: no

text: no

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: 1-10 cigarettes/day

text: no

text: no

text: human gut metagenome

text: yes

text: no

text: no

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: female

text: not collected

text: yes

text: yes

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: More than 6 months no antibiotics

text: no

text: no

text: no

text: no

text: no

text: no

text: not collected

text: Never chronic alcohol consumption

text: no

text: no

text: not relevant

text: no

text: eSwab

text: rectal

text: no

text: no

text: no

text: omnivour

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated

text: intestine environment

text: human-gut

text: Caucasian

text: no

text: no

text: not collected

text: no

text: yes

text: Germany:Stadt Gottingen

text: no

text: no

text: no

text: no

text: Homo sapiens

characteristic: host scientific name

text: years

text: UBERON:gastrointestinal system

text: UBERON:feces

text: UBERON:rectum

text: human

text: cm

text: kg

text: no

characteristic: immunosuppressant

text: no

text: no

characteristic: insuline

text: University medical center Goettingen

text: no

text: Decimal degrees

text: no

characteristic: laxatives

text: adult

text: no

text: no

text: Pancreatic head resection

text: Decimal degrees

text: no

text: no

text: no

text: no

text: >20 cigarettes/day

text: no

text: no

text: human gut metagenome

text: no

text: no

text: yes

text: no

text: no

text: no

text: no

text: no

text: UMG

text: FALSE

text: no

text: no

text: rectal swab

text: human gut metagenome

text: male

text: not collected

text: no

text: no

text: < 1 week after enrollment

text: not provided

text: TRUE

text: no fistula

text: Traverso