characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1647179 of study SRP049645.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Staphylococcus saccharolyticus

text: Viruses can impact microbiome structure and function through predation and genetic exchange, but little is known of cutaneous viral communities and their interactions with their hosts. To query virus-host interactions of the skin, we performed parallel metagenomic sequencing and an integrated analysis of DNA isolated from virus-like particles (VLPs) and total microbial communities. To assess spatial, interpersonal, and temporal variance, samples were collected from eight anatomical skin sites of 16 healthy individuals over two months. Skin viral communities were dominated by tailed bacteriophages--viruses replicating on human cells were comparatively rare. Similar to the skin whole metagenome, viral community composition and diversity was strongly associated with the microenvironment of the site sampled, and temporal variation within an individual was small compared to differences between individuals. Virome communities were enriched for genes indicative of a temperate phage replication style, indicating that many infections would be non-lethal to the host and provide an opportunity for gene transfer. CRISPR spacers identified in the bacterial DNA sequences provided a record of phage predation. Among these, some spacers targeted phage found at different body sites, suggesting that CRISPR spacer acquisition may provide a mechanism to explain spatial partitioning of skin phage communities. Our findings provide new insight into the skin virome, its interactions with the whole metagenome, and establish a foundation for understanding these dynamics in skin health and disease.

text: Staphylococcus saccharolyticus

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR1647179_bin.9_CONCOCT_v1.1_MAG

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950703 of study SRP056821.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: not provided

text: not provided

unit: DD

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Corynebacterium lipophiloflavum

characteristic: organism

text: Human Skin Microbiome

characteristic: project name

characteristic: sample derived from

text: Corynebacterium lipophiloflavum

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1950703_bin.31_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950710 of study SRP056821.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Enterobacteriaceae bacterium

text: Human Skin Microbiome

text: uncultured Enterobacteriaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR1950710_bin.18_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950735 of study SRP056821.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Corynebacterium sp.

characteristic: organism

text: Human Skin Microbiome

characteristic: project name

characteristic: sample derived from

text: uncultured Corynebacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1950735_bin.55_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950741 of study SRP056821.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Corynebacterium sp.

text: Human Skin Microbiome

text: uncultured Corynebacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR1950741_bin.19_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950750 of study SRP056821.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Corynebacterium sp.

characteristic: organism

text: Human Skin Microbiome

characteristic: project name

characteristic: sample derived from

text: uncultured Corynebacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1950750_bin.37_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1950779 of study SRP056821.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Propionibacteriaceae bacterium

text: Human Skin Microbiome

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR1950779_bin.10_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Janibacter sp.

characteristic: organism

text: Human Skin Microbiome

characteristic: project name

characteristic: sample derived from

text: uncultured Janibacter sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1950779_bin.11_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Sphingopyxis sp.

text: Human Skin Microbiome

text: uncultured Sphingopyxis sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR1950779_bin.20_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Tetrasphaera sp.

characteristic: organism

text: Human Skin Microbiome

characteristic: project name

characteristic: sample derived from

text: uncultured Tetrasphaera sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1950779_bin.24_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Arsenicicoccus sp.

text: Human Skin Microbiome

text: uncultured Arsenicicoccus sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR1950779_bin.25_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Cruoricaptor sp.

characteristic: organism

text: Human Skin Microbiome

characteristic: project name

characteristic: sample derived from

text: uncultured Cruoricaptor sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR1950779_bin.5_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2005651 of study SRP057859.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Corynebacterium sp.

text: Skin shotgun metagenomes from psoriasis patients

text: uncultured Corynebacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR2005651_bin.20_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Italy

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Corynebacterium kroppenstedtii

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Corynebacterium kroppenstedtii

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR2005651_bin.5_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Anaerococcus octavius

text: Anaerococcus octavius

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR2005651_bin.8_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2005698 of study SRP057859.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Italy

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Anaerococcus sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerococcus sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR2005698_bin.10_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Peptoniphilus sp.

text: uncultured Peptoniphilus sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR2005698_bin.2_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3183846 of study SRP002480.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Alloiococcus otitis

characteristic: organism

text: 16S rRNA gene sequences amplified from subjects with eczema and age-matched healthy controls. <p> Microbes living in and on humans are ten times more numerous than human cells. Culture-based methods have been the primary techniques used to study microbes inhabiting humans; however, many species are not successfully grown in culture. The NIH Roadmap for Medical Research Human Microbiome Project (HMP) aims to investigate the microbes in the gastrointestinal tract, oral cavity, skin, vagina, and nares. The goal of the HMP is to comprehensively characterize the human microbiota and analyze its role in human health and disease. <p> The skin serves not only as a barrier against invading pathogens and moisture loss, but also as a host to microbial communities. The skin of an adult is an approximately 2 square meter surface with a myriad of microenvironments. Atopic dermatitis (AD), more commonly known as eczema, is a common skin disorder that is exacerbated by Staphylococcus aureus colonization. This study aims to investigate the skin microbiota of AD patients at specific timepoints (quiescence, disease flares, and post-treatment) to examine how disease state correlates with changes in the skin microflora. <p> The 16S small subunit ribosomal (rRNA) gene is present in every bacterial cell, serving as a universal marker. The gene is sufficiently conserved to allow accurate alignment but adequately varied to enable phylogenetic analyses. Sequencing via 16S rRNA-based phylotyping has been used to survey the bacterial microbes on the skin. Initially, we will examine the bacterial diversity associated with AD using a 16S rRNA survey and later broadening to include fungi, viruses, archaea and mites. In addition, bacteria will be cultured on a wide variety of media and isolates representing both abundant and novel species will be selected for whole genome sequencing. <p> To characterize fungal diversity, we utilize two phylogenetic markers within the rDNA region: 18S rRNA and the Intervening Internal Transcribed Spacer (ITS) region. Full microbial diversity will be explored with shotgun metagenomic sequencing.

characteristic: project name

characteristic: sample derived from

text: Alloiococcus otitis

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3183846_bin.53_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3184092 of study SRP002480.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Corynebacterium otitidis

text: Corynebacterium otitidis

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3184092_bin.37_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3184093 of study SRP002480.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Acidipropionibacterium timonense

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Acidipropionibacterium timonense

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3184093_bin.7_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3184099 of study SRP002480.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Pseudomonas helleri

text: Pseudomonas helleri

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3184099_bin.34_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3184099_bin.4_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Enterobacterales bacterium

text: uncultured Enterobacterales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3184099_bin.6_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3184876 of study SRP002480.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Deinococcus sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Deinococcus sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3184876_bin.21_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3186853 of study SRP002480.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Flavobacterium sp.

text: uncultured Flavobacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3186853_bin.36_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Pseudomonas sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudomonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3186853_bin.6_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3186855 of study SRP002480.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Brevundimonas sp.

text: uncultured Brevundimonas sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3186855_bin.20_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3186858 of study SRP002480.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Brevundimonas sp.

characteristic: organism

text: 16S rRNA gene sequences amplified from subjects with eczema and age-matched healthy controls. <p> Microbes living in and on humans are ten times more numerous than human cells. Culture-based methods have been the primary techniques used to study microbes inhabiting humans; however, many species are not successfully grown in culture. The NIH Roadmap for Medical Research Human Microbiome Project (HMP) aims to investigate the microbes in the gastrointestinal tract, oral cavity, skin, vagina, and nares. The goal of the HMP is to comprehensively characterize the human microbiota and analyze its role in human health and disease. <p> The skin serves not only as a barrier against invading pathogens and moisture loss, but also as a host to microbial communities. The skin of an adult is an approximately 2 square meter surface with a myriad of microenvironments. Atopic dermatitis (AD), more commonly known as eczema, is a common skin disorder that is exacerbated by Staphylococcus aureus colonization. This study aims to investigate the skin microbiota of AD patients at specific timepoints (quiescence, disease flares, and post-treatment) to examine how disease state correlates with changes in the skin microflora. <p> The 16S small subunit ribosomal (rRNA) gene is present in every bacterial cell, serving as a universal marker. The gene is sufficiently conserved to allow accurate alignment but adequately varied to enable phylogenetic analyses. Sequencing via 16S rRNA-based phylotyping has been used to survey the bacterial microbes on the skin. Initially, we will examine the bacterial diversity associated with AD using a 16S rRNA survey and later broadening to include fungi, viruses, archaea and mites. In addition, bacteria will be cultured on a wide variety of media and isolates representing both abundant and novel species will be selected for whole genome sequencing. <p> To characterize fungal diversity, we utilize two phylogenetic markers within the rDNA region: 18S rRNA and the Intervening Internal Transcribed Spacer (ITS) region. Full microbial diversity will be explored with shotgun metagenomic sequencing.

characteristic: project name

characteristic: sample derived from

text: uncultured Brevundimonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3186858_bin.18_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3187092 of study SRP002480.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Brevundimonas sp.

text: uncultured Brevundimonas sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3187092_bin.31_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Microbacterium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Microbacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3187092_bin.43_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3187753 of study SRP002480.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Francisella sp.

text: uncultured Francisella sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3187753_bin.4_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145059 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Paraburkholderia fungorum

characteristic: organism

text: A metagenomic study on the skin microbiome after contact with MTR trains

characteristic: project name

characteristic: sample derived from

text: Paraburkholderia fungorum

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145059_bin.9_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145064 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Dermacoccus nishinomiyaensis

text: Dermacoccus nishinomiyaensis

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145064_bin.34_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145067 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Streptococcus mitis

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Streptococcus mitis

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145067_bin.31_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145072 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Nocardiaceae bacterium

text: uncultured Nocardiaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145072_bin.24_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145073 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Sphingomonas sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Sphingomonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145073_bin.43_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145077 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Micrococcus luteus

text: Micrococcus luteus

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145077_bin.44_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145078 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Rothia kristinae

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Rothia kristinae

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145078_bin.31_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Staphylococcus warneri

text: Staphylococcus warneri

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145078_bin.32_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145079 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Streptococcus sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Streptococcus sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145079_bin.29_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145080 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Chitinophagaceae bacterium

text: A metagenomic study on the skin microbiome after contact with MTR trains

text: uncultured Chitinophagaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145080_bin.36_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145081 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Janibacter hoylei

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Janibacter hoylei

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145081_bin.7_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145083 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Propionibacteriaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145083_bin.44_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145086 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145086_bin.28_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145088 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Polycyclovorans sp.

text: uncultured Polycyclovorans sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145088_bin.25_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: Candidatus Phaeomarinobacter ectocarpi

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: Candidatus Phaeomarinobacter ectocarpi

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145088_bin.29_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145091 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Rhodoplanes sp.

text: uncultured Rhodoplanes sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145091_bin.7_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145093 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Cutibacterium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Cutibacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145093_bin.10_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Bradyrhizobium sp.

text: A metagenomic study on the skin microbiome after contact with MTR trains

text: uncultured Bradyrhizobium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145093_bin.62_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145096 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Francisella sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Francisella sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145096_bin.0_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145099 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Chryseobacterium sp.

text: uncultured Chryseobacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145099_bin.13_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Xanthomonadaceae bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Xanthomonadaceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145099_bin.22_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: Lysobacter tolerans

text: Lysobacter tolerans

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145099_bin.27_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Moraxellaceae bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Moraxellaceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145099_bin.29_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Chloracidobacterium sp.

text: uncultured Chloracidobacterium sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145099_bin.35_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Chryseobacterium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Chryseobacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145099_bin.46_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145101 of study SRP119528.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: Hong Kong

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Empedobacter sp.

text: uncultured Empedobacter sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR6145101_bin.32_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6145102 of study SRP119528.

text: Host-associated

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Skin

characteristic: environment (material)

text: Hong Kong

text: metagenome-assembled genome

characteristic: investigation type

text: human skin metagenome

text: human skin metagenome

characteristic: metagenomic source

text: uncultured Halomonas sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Halomonas sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR6145102_bin.28_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.13.0

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6216767 of study SRP121403.

characteristic: description

text: Host-associated

text: Human

text: Skin

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: human skin metagenome

text: human skin metagenome

text: uncultured Cellulosimicrobium sp.

text: The study aimed at exploring the scalp microbiome in Indian individuals with dandruff and non-dandruff scalp. Since, coconut oil is used in many parts of the country, the effect of coconut oil was also assessed on the microbiome in a time-course of 16 weeks.

text: uncultured Cellulosimicrobium sp.

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: SRR6216767_bin.13_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2114804 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: Flavobacterium alvei

characteristic: organism

text: Dinitrogen fixation by Nostoc azollae residing in specialized leaf pockets supports prolific growth of the floating fern Azolla filiculoides. To evaluate contributions by further microorganisms, the A. filiculoides microbiome and nitrogen metabolism in bacteria persistently associated with Azolla ferns were characterized. A metagenomic approach was taken complemented by nitrogen isotope determinations of fern biomass and detection of N2O released. Ribosomal RNA genes in sequenced DNA of natural ferns, their enriched leaf pockets and water filtrate from the surrounding ditch established that bacteria of A. filiculoides differed entirely from surrounding water and revealed species of the order Rhizobiales. Analyses of seven cultivated Azolla species confirmed persistent association with Rhizobiales. Two distinct near full-length Rhizobiales genomes were identified from leaf-pocket enriched samples from ditch grown A. filiculoides. Annotation revealed genes for denitrification but not N2-fixation. 15N2 incorporation was active in ferns with N. azollae but not in ferns without. N2O was not detectably released from surface sterilized ferns with the Rhizobiales. N2-fixing N. azollae, we conclude, dominated the microbiome of Azolla ferns. The persistent but less abundant heterotrophic Rhizobiales bacteria possibly contributed to lowering O2 levels in leaf pockets but did not release detectable amounts of the strong greenhouse gas N2O.

characteristic: project name

characteristic: sample derived from

text: Flavobacterium alvei

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2114804_bin.63_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2114805 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Methylomonas sp.

text: uncultured Methylomonas sp.

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2114805_bin.24_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Methylotenera sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Methylotenera sp.

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2114805_bin.45_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Arcobacter sp.

text: uncultured Arcobacter sp.

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2114805_bin.57_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Aurantimicrobium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Aurantimicrobium sp.

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2114805_bin.82_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2114806 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Rhodoferax sp.

text: uncultured Rhodoferax sp.

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2114806_bin.16_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Methylotenera sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Methylotenera sp.

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2114806_bin.23_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Candidatus Gracilibacteria bacterium

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2114806_bin.75_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2114811 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Ramlibacter sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Ramlibacter sp.

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2114811_bin.2_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured cyanobacterium

text: uncultured cyanobacterium

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR2114811_bin.3_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Dongia sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Dongia sp.

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2114811_bin.4_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144881 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Ralstonia sp.

text: Dinitrogen fixation by Nostoc azollae residing in specialized leaf pockets supports prolific growth of the floating fern Azolla filiculoides. To evaluate contributions by further microorganisms, the A. filiculoides microbiome and nitrogen metabolism in bacteria persistently associated with Azolla ferns were characterized. A metagenomic approach was taken complemented by nitrogen isotope determinations of fern biomass and detection of N2O released. Ribosomal RNA genes in sequenced DNA of natural ferns, their enriched leaf pockets and water filtrate from the surrounding ditch established that bacteria of A. filiculoides differed entirely from surrounding water and revealed species of the order Rhizobiales. Analyses of seven cultivated Azolla species confirmed persistent association with Rhizobiales. Two distinct near full-length Rhizobiales genomes were identified from leaf-pocket enriched samples from ditch grown A. filiculoides. Annotation revealed genes for denitrification but not N2-fixation. 15N2 incorporation was active in ferns with N. azollae but not in ferns without. N2O was not detectably released from surface sterilized ferns with the Rhizobiales. N2-fixing N. azollae, we conclude, dominated the microbiome of Azolla ferns. The persistent but less abundant heterotrophic Rhizobiales bacteria possibly contributed to lowering O2 levels in leaf pockets but did not release detectable amounts of the strong greenhouse gas N2O.

text: uncultured Ralstonia sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144881_bin.15_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144882 of study ERP021566.

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: Netherlands

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Rhizobium sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Rhizobium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144882_bin.0_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2144884 of study ERP021566.

characteristic: description

text: Host-associated

text: Plants

text: Plants

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: plant metagenome

text: plant metagenome

text: uncultured Sphingomonas sp.

text: uncultured Sphingomonas sp.

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: ERR2144884_bin.11_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Host-associated

characteristic: environment (biome)

text: Plants

characteristic: environment (feature)

text: Plants

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: plant metagenome

text: plant metagenome

characteristic: metagenomic source

text: uncultured Herbaspirillum sp.

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Herbaspirillum sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR2144884_bin.2_CONCOCT_v1.1_MAG