text: public

text: infant gut microbiota in lumen of 1-M colon model at 56h after adaptation period of 2FL-amox/clav treatment 3

text: human gut metagenome

text: human gut metagenome


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

characteristic: Submitter Id

text: infant gut microbiota in lumen of 1-M colon model at 72h after adaptation period of 2FL-amox/clav treatment 3

characteristic: description

text: human gut metagenome

characteristic: organism

text: human gut metagenome

characteristic: title


text: WAGENINGEN UNIVERSITY, LABORATORY OF MICROBIOLOGY

text: public

text: DNA buffer control

text: human gut metagenome

text: human gut metagenome


text: public

text: mock communities of gut bacteria (composition 3)

text: human gut metagenome

text: human gut metagenome


text: public

text: mock communities of gut bacteria (composition 4)

text: human gut metagenome

text: human gut metagenome


text: public

text: no template PCR control

text: metagenome

text: metagenome


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

tag: Namespace:Dutch COVID-19 response team

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: Lysis

characteristic: isolation source host-associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: Lysis

characteristic: organism


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Holland

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Lysis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

text: Zeeland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: Lysis

characteristic: isolation source host-associated

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: restricted access

text: Lysis

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

text: Netherlands

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: Throat/Nasal

characteristic: title


characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Zuid-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

characteristic: sample capture status


Cpunc-AMG

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPICE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cpunc-AMG

text: dissected anterior main gland

text: Corixa punctata

characteristic: organism

text: Corixa punctata

text: anterior main gland


Cpunc-PMG

text: MPICE

text: public

text: Cpunc-PMG

characteristic: Submitter Id

text: dissected posterior main gland

text: Corixa punctata

text: Corixa punctata

text: posterior main gland

characteristic: title


Cpunc-GUT

text: MPICE

text: public

text: Cpunc-GUT

text: dissected gut w/o body

characteristic: description

text: Corixa punctata

text: Corixa punctata

text: gut


Cpunc-RB

text: MPICE

text: public

text: Cpunc-RB

text: rest body w/o gut and glands

text: Corixa punctata

text: Corixa punctata

text: rest body


Icimi-AG

text: MPICE

text: public

text: Icimi-AG

text: dissected accessory gland

text: Ilyocoris cimicoides cimicoides

text: Ilyocoris cimicoides cimicoides

text: accessory gland


Icimi-AMG

text: MPICE

text: public

text: Icimi-AMG

text: dissected anterior main gland

text: Ilyocoris cimicoides cimicoides

text: Ilyocoris cimicoides cimicoides

text: anterior main gland


Icimi-PMG

text: MPICE

text: public

text: Icimi-PMG

text: dissected posterior main gland

text: Ilyocoris cimicoides cimicoides

text: Ilyocoris cimicoides cimicoides

text: posterior main gland


Icimi-GUT

text: MPICE

text: public

text: Icimi-GUT

text: dissected gut w/o body

text: Ilyocoris cimicoides cimicoides

text: Ilyocoris cimicoides cimicoides

text: gut


Icimi-RB

text: MPICE

text: public

text: Icimi-RB

text: rest body w/o gut and glands

text: Ilyocoris cimicoides cimicoides

text: Ilyocoris cimicoides cimicoides

text: rest body


Ncine-AG

text: MPICE

text: public

text: Ncine-AG

text: dissected accessory gland

text: Nepa cinerea

text: Nepa cinerea

text: accessory gland


Ncine-AMG

text: MPICE

text: public

text: Ncine-AMG

text: dissected anterior main gland

text: Nepa cinerea

text: Nepa cinerea

text: anterior main gland


Ncine-PMG

text: MPICE

text: public

text: Ncine-PMG

text: dissected posterior main gland

text: Nepa cinerea

text: Nepa cinerea

text: posterior main gland


Ncine-GUT

text: MPICE

text: public

text: Ncine-GUT

text: dissected gut w/o body

text: Nepa cinerea

text: Nepa cinerea

text: gut


Ncine-RB

text: MPICE

text: public

text: Ncine-RB

text: rest body w/o gut and glands

text: Nepa cinerea

text: Nepa cinerea

text: rest body


Nglau-AMG

text: MPICE

text: public

text: Nglau-AMG

text: dissected anterior main gland

text: Notonecta glauca

text: Notonecta glauca

text: anterior main gland


Nglau-PMG

text: MPICE

text: public

text: Nglau-PMG

text: dissected posterior main gland

text: Notonecta glauca

text: Notonecta glauca

text: posterior main gland


Nglau-GUT

text: MPICE

text: public

text: Nglau-GUT

text: dissected gut w/o body

text: Notonecta glauca

text: Notonecta glauca

text: gut


Nglau-RB

text: MPICE

text: public

text: Nglau-RB

text: rest body w/o gut and glands

text: Notonecta glauca

text: Notonecta glauca

text: rest body


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: IRMA TANDINGAN DE LEY I JACOB SHURCKMAN

text: UC Riverside

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Virginia | Virginia Beach | 4291 Holland Rd | Fear Not Tarantulas Pet Shop

characteristic: geographic location (region and locality)

text: Dying Grammostola pulchra from Pet shop, gently pushed inside plated NGM to dislodge nematodes, nematodes isolated to pure culture and growing on associatted bacteria

characteristic: habitat

text: JACOB SHURCKMAN I IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

characteristic: lifestage

text: Tarantobelus jeffdanielsi

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Tarantobelus jeffdanielsi

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IRMA TANDINGAN DE LEY I JACOB SHURCKMAN

text: UC Riverside

text: USA

text: California | Monterey | Griggs Nursery

text: Deroceras reticulatum collected from under a Grigg's nursery pot; fed with organic carrots in the lab until death, transfered to 1% agar and emerging nematodes were isolated to pure culture on NGM seeded with associated bacteria

text: IRMA TANDINGAN DE LEY I JACOB SHURCKMAN

text: UC Riverside

text: adult

text: Phasmarhabditis papillosa

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Phasmarhabditis papillosa

text: NOT COLLECTED

text: NOT COLLECTED

text: N


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: IRMA TANDINGAN DE LEY I RORY MC DONNELL

text: UC Riverside

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: California | Humboldt county | Eureka | Greenlot nursery

characteristic: geographic location (region and locality)

text: Deroceras reticulatum collected from under a Greenlot nursery pot, fed with organic carrots in the lab until death, transfered to 1% agar and emerging nematodes were isolated to pure culture on NGM seeded with associated bacteria

characteristic: habitat

text: IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

characteristic: lifestage

text: Phasmarhabditis hermaphrodita

text: WHOLE ORGANISM

text: ToL

text: Phasmarhabditis hermaphrodita

text: HERMAPHRODITE MONOECIOUS

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: IRMA TANDINGAN DE LEY I RORY MC DONNELL

text: UC Riverside

text: USA

text: California | San Diego county | Armstrong nursery and garden center

text: Deroceras reticulatum collected from under an Armstrong nursery pot, fed with organic carrots in the lab until death, transfered to 1% agar and emerging nematodes were isolated to pure culture on NGM seeded with associated bacteria

text: IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

text: Phasmarhabditis papillosa

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Phasmarhabditis papillosa

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IRMA TANDINGAN DE LEY I RORY MC DONNELL

text: UC Riverside

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Deroceras laeve collected from under a Greenlot nursery pot, fed with organic carrots in the lab until death, transfered to 1% agar and emerging nematodes were isolated to pure culture on NGM seeded with associated bacteria

text: IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

text: Phasmarhabditis californica

characteristic: organism

text: WHOLE ORGANISM

text: ToL

text: Phasmarhabditis californica

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Brandenburg | 14532 Kleinmachnow

characteristic: geographic location (region and locality)

text: Ruderal area, dry ground

characteristic: habitat

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: adult

characteristic: lifestage

text: Pellioditis pellio

text: WHOLE ORGANISM

text: ToL

text: Pellioditis pellio

text: FEMALE

text: NOT COLLECTED

text: N

characteristic: title


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRMA TANDINGAN DE LEY I JACOB SHURCKMAN

text: UC Riverside

text: USA

text: JACOB SHURCKMAN I IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

text: Tarantobelus jeffdanielsi

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

characteristic: sample same as

text: Tarantobelus jeffdanielsi

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IRMA TANDINGAN DE LEY I JACOB SHURCKMAN

text: UC Riverside

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: California | Monterey | Griggs Nursery

text: IRMA TANDINGAN DE LEY I JACOB SHURCKMAN

text: UC Riverside

text: adult

text: Phasmarhabditis papillosa

characteristic: organism

text: WHOLE ORGANISM

text: Phasmarhabditis papillosa

text: NOT COLLECTED

text: NOT COLLECTED

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRMA TANDINGAN DE LEY I RORY MC DONNELL

text: UC Riverside

text: USA

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

characteristic: habitat

text: IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

characteristic: lifestage

text: Phasmarhabditis hermaphrodita

text: WHOLE ORGANISM

characteristic: organism part

text: Phasmarhabditis hermaphrodita

text: HERMAPHRODITE MONOECIOUS

text: NOT COLLECTED

text: N

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IRMA TANDINGAN DE LEY I RORY MC DONNELL

text: UC Riverside

text: USA

text: IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

text: Phasmarhabditis papillosa

text: WHOLE ORGANISM

characteristic: project name

characteristic: sample same as

text: Phasmarhabditis papillosa

text: NOT COLLECTED

characteristic: sex

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: tolid


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRMA TANDINGAN DE LEY I RORY MC DONNELL

text: UC Riverside

characteristic: collecting institution

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: IRMA TANDINGAN DE LEY

text: University of California-Riverside

text: adult

text: Phasmarhabditis californica

characteristic: organism

text: WHOLE ORGANISM

text: Phasmarhabditis californica

text: NOT COLLECTED

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: Germany

text: Brandenburg | 14532 Kleinmachnow

characteristic: geographic location (region and locality)

text: Ruderal area, dry ground

characteristic: habitat

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: adult

characteristic: lifestage

text: Pellioditis pellio

text: WHOLE ORGANISM

characteristic: organism part

text: Pellioditis pellio

text: FEMALE

text: NOT COLLECTED

text: N

characteristic: title


text: NIPH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ELIXIR-Norway

characteristic: broker name

text: S. pyogenes

characteristic: common name

text: GAS routine sample

characteristic: description

text: Norway

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood

text: Streptococcus pyogenes

text: Streptococcus pyogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIPH

text: public

characteristic: SRA accession

text: ELIXIR-Norway

text: S. pyogenes

text: GAS routine sample

text: Norway

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: Phlegm

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


text: Mario Negri Institute

characteristic: INSDC center name

text: public

tag: Namespace:Mario Negri Institute

characteristic: Submitter Id

text: human

text: aHUS

text: Homo sapiens

text: Homo sapiens

text: CFH-CFHRs long read seq

characteristic: title


E-MTAB-12515:Sample 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12515:Sample 1

tag: Namespace:University College London UK Dementia Research Institute

text: 12 to 16

unit: week

characteristic: age

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Protocols: Ribosome Immunoprecipitation (IP): Samples were extracted from mice, flash-frozen in liquid nitrogen and stored at −80 °C until use. Samples were homogenized on ice in ice-cold homogenization buffer (50 mM Tris, pH 7.4, 100 mM KCl, 12 mM MgCl2, 1% NP-40, 1 mM DTT, 1:100 protease inhibitor (Sigma), 200 units/ml RNasin (Promega) and 0.1 mg/ml cycloheximide (Sigma) in RNase free DDW) 10% w/v with a Dounce homogenizer (Sigma) until the suspension was homogeneous. To remove cell debris, 1 ml of the homogenate was transferred to an Eppendorf tube and was centrifuged at 10,000g and 4°C for 10 min. Supernatants were transferred to a fresh Eppendorf tube on ice, then 10μl was removed for 'input' analysis and 10μg of anti-HA.7 antibody (H9658, Sigma) or 10µg of mouse monoclonal IgG1 antibody (Merck, Cat# PP100) was added to the supernatant, followed by 4 h of incubation with slow rotation in a cold room at 4 °C. Meanwhile, Dynabeads Protein G (Thermo Fisher Scientific), 100 μl per sample, were equilibrated to homogenization buffer by washing three times. At the end of 4 h of incubation with antibody, beads were added to each sample, followed by incubation overnight in a cold room at 4 °C. After up to 12 h, samples were washed three times with high-salt buffer (50 mM Tris, pH 7.4, 300 mM KCl, 12 mM MgCl2, 1% NP-40, 1 mM DTT, 1:200 protease inhibitor, 100 units/ml RNasin and 0.1 mg/ml cycloheximide in RNase free DDW), 5 min per wash in a cold room on a rotator. At the end of the washes, beads were magnetized and excess buffer was removed, 100µl Lysis Buffer was added to the beads and RNA was extracted with Dynabeads mRNA Direct. mRNA was captured with Dynabeads oligo(dT) (Life Technologies) according to the manufacturer’s guidelines. We used a derivation of MARS-seq 58. Library concentration was measured with a Qubit fluorometer (Life Technologies) and mean molecule size was determined with a 2200 TapeStation instrument. Library concentration was measured with a Qubit fluorometer (Life Technologies) and mean molecule size was determined with a 2200 TapeStation instrument.

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-12515:Sample 2

characteristic: ENA-CHECKLIST

text: University College London UK Dementia Research Institute

text: public

text: E-MTAB-12515:Sample 2

text: 12 to 16

text: ArrayExpress

characteristic: broker name

text: perivascular macrophage

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 2


E-MTAB-12515:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-12515:Sample 3

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 3


E-MTAB-12515:Sample 4

characteristic: INSDC center name

text: public

text: E-MTAB-12515:Sample 4

characteristic: Submitter Id

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 4


E-MTAB-12515:Sample 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12515:Sample 5

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 5

characteristic: title


E-MTAB-12515:Sample 6

text: public

characteristic: INSDC status

text: E-MTAB-12515:Sample 6

text: 12 to 16

characteristic: age

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

characteristic: organism part

text: Mus musculus

text: male

text: Sample 6


E-MTAB-12515:Sample 7

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12515:Sample 7

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 7


E-MTAB-12515:Sample 8

text: public

text: E-MTAB-12515:Sample 8

text: 12 to 16

text: ArrayExpress

characteristic: broker name

text: perivascular macrophage

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 8


E-MTAB-12515:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-12515:Sample 9

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 9


E-MTAB-12515:Sample 10

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12515:Sample 10

characteristic: Submitter Id

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 10


E-MTAB-12515:Sample 11

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12515:Sample 11

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 11


E-MTAB-12515:Sample 12

text: public

characteristic: INSDC status

text: E-MTAB-12515:Sample 12

text: 12 to 16

characteristic: age

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 12

characteristic: title


E-MTAB-12515:Sample 13

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12515:Sample 13

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: Sample 13


E-MTAB-12515:Sample 14

text: public

text: E-MTAB-12515:Sample 14

text: 12 to 16

text: ArrayExpress

characteristic: broker name

text: perivascular macrophage

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

characteristic: strain

text: Sample 14


E-MTAB-12515:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12515:Sample 15

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 15


E-MTAB-12515:Sample 16

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-12515:Sample 16

text: 12 to 16

text: ArrayExpress

text: perivascular macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 16


E-MTAB-12515:Sample 17

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12515:Sample 17

characteristic: Submitter Id

text: 12 to 16

text: ArrayExpress

text: microglial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 17


E-MTAB-12515:Sample 18

text: public

characteristic: INSDC status

text: E-MTAB-12515:Sample 18

text: 12 to 16

characteristic: age

text: ArrayExpress

text: microglial cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: male

text: Sample 18


E-MTAB-12515:Sample 19

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12515:Sample 19

text: 12 to 16

text: ArrayExpress

text: microglial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

characteristic: organism part

text: Mus musculus

text: male

text: Sample 19

characteristic: title


E-MTAB-12515:Sample 20

text: public

text: E-MTAB-12515:Sample 20

text: 12 to 16

text: ArrayExpress

characteristic: broker name

text: microglial cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

characteristic: sex

text: Sample 20


E-MTAB-12515:Sample 21

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12515:Sample 21

text: 12 to 16

text: ArrayExpress

text: microglial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

characteristic: strain

text: Sample 21


E-MTAB-12515:Sample 22

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-12515:Sample 22

text: 12 to 16

text: ArrayExpress

text: microglial cell

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 22


E-MTAB-12515:Sample 23

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-12515:Sample 23

text: 12 to 16

text: ArrayExpress

text: microglial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 23


E-MTAB-12515:Sample 24

text: public

characteristic: INSDC status

text: E-MTAB-12515:Sample 24

characteristic: Submitter Id

text: 12 to 16

characteristic: age

text: ArrayExpress

text: microglial cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: cerebral hemisphere

text: Mus musculus

text: female

text: Sample 24


E-MTAB-12492:Sample 11

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-12492:Sample 11

tag: Namespace:UCL GOS Institute of Child Health, University College London

text: ArrayExpress

text: human

text: Protocols: Human embryonic and fetal tissue samples used for bulk-RNA seq were obtained with ethical approval and informed consent from the Human Developmental Biology Resource (http://www.hdbr.org).The age of embryos up to 8wpc was calculated based on Carnegie staging, whereas in older fetuses the age was estimated from foot length and knee-heel length in relation to standard growth data. Samples were karyotyped by G-banding or quantitative PCR (chromosomes 13, 16, 18, 21, 22 and X and Y) to determine the sex of the embryo/fetus and to exclude any major chromosomal rearrangements or aneuploidies. Total RNA was extracted from human fetal adrenal samples and controls using the AllPrep DNA/RNA Mini Kit (Qiagen) cDNA libraries were prepared using the KAPA mRNA HyperPrep Kit (Roche)

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: karyotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 11


E-MTAB-12492:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCL GOS Institute of Child Health, University College London

text: public

text: E-MTAB-12492:Sample 17

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

characteristic: sex

text: Sample 17

characteristic: title


E-MTAB-12492:Sample 20

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 20

text: ArrayExpress

text: human

characteristic: description

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 20


E-MTAB-12492:Sample 21

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 21

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 21


E-MTAB-12492:Sample 23

text: public

text: E-MTAB-12492:Sample 23

text: ArrayExpress

text: human

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: karyotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 23


E-MTAB-12492:Sample 25

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 25

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

characteristic: sex

text: Sample 25


E-MTAB-12492:Sample 29

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 29

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 29

characteristic: title


E-MTAB-12492:Sample 3

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-12492:Sample 30

text: public

text: E-MTAB-12492:Sample 30

characteristic: age

text: ArrayExpress

text: human

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: karyotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 30


E-MTAB-12492:Sample 34

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 34

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 34


E-MTAB-12492:Sample 39

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 39

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

characteristic: sex

text: Sample 39


E-MTAB-12492:Sample 40

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 40

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 40

characteristic: title


E-MTAB-12492:Sample 44

text: public

text: E-MTAB-12492:Sample 44

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 44


E-MTAB-12492:Sample 45

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 45

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

text: Sample 45


E-MTAB-12492:Sample 46

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 46

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 46


E-MTAB-12492:Sample 8

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: female

characteristic: sex

text: Sample 8


E-MTAB-12492:Sample 33

text: public

text: E-MTAB-12492:Sample 33

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female

text: Sample 33

characteristic: title


E-MTAB-12492:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 10

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: heart

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-12492:Sample 18

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 18

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: female

text: Sample 18


E-MTAB-12492:Sample 43

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 43

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 43


E-MTAB-12492:Sample 12

text: public

text: E-MTAB-12492:Sample 12

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: muscle

text: Homo sapiens

text: female

characteristic: sex

text: Sample 12


E-MTAB-12492:Sample 36

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 36

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: female

text: Sample 36

characteristic: title


E-MTAB-12492:Sample 19

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 19

text: ArrayExpress

text: human

text: embryo

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: female

text: Sample 19


E-MTAB-12492:Sample 15

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 15


E-MTAB-12492:Sample 16

text: public

text: E-MTAB-12492:Sample 16

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 16


E-MTAB-12492:Sample 22

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 22

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

characteristic: sex

text: Sample 22


E-MTAB-12492:Sample 24

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 24

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 24

characteristic: title


E-MTAB-12492:Sample 26

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 26


E-MTAB-12492:Sample 27

text: public

text: E-MTAB-12492:Sample 27

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 27


E-MTAB-12492:Sample 28

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 28

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 28


E-MTAB-12492:Sample 31

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 31

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

characteristic: sex

text: Sample 31


E-MTAB-12492:Sample 32

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 32

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 32

characteristic: title


E-MTAB-12492:Sample 35

text: public

text: E-MTAB-12492:Sample 35

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 35


E-MTAB-12492:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 4

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 4


E-MTAB-12492:Sample 41

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 41

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 41


E-MTAB-12492:Sample 42

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 42

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

characteristic: sex

text: Sample 42


E-MTAB-12492:Sample 5

text: public

text: E-MTAB-12492:Sample 5

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 5

characteristic: title


E-MTAB-12492:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 6

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 6


E-MTAB-12492:Sample 7

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 7

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adrenal gland

text: Homo sapiens

text: male

text: Sample 7


E-MTAB-12492:Sample 2

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 2


E-MTAB-12492:Sample 1

text: public

text: E-MTAB-12492:Sample 1

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1


E-MTAB-12492:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 38

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

text: Sample 38

characteristic: title


E-MTAB-12492:Sample 9

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12492:Sample 9

text: ArrayExpress

text: human

text: embryo

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: male

text: Sample 9


E-MTAB-12492:Sample 13

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12492:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryo

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: muscle

text: Homo sapiens

text: male

text: Sample 13


E-MTAB-12492:Sample 14

text: public

text: E-MTAB-12492:Sample 14

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: muscle

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 14


E-MTAB-12492:Sample 37

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-12492:Sample 37

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: male

characteristic: sex

text: Sample 37


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Omics Core Facility NGS Unit Medical School OWL & CeBiTec Bielefeld University

text: ArrayExpress

text: Protocols: The cells were harvested in the exponential growth phase and frozen in liquid nitrogen. Total RNA was isolated from 3 biological replicates of C. glutamicum cells by a Quick-RNA Miniprep Plus kit (Zymo Research). The samples were treated with DNase (Roche Diagnostics) and RNA was purified with an RNA Clean&Concentrator-5 kit (Zymo Research). Ribosomal rRNA was removed with a Ribo-Zero rRNA Removal Kit for bacteria (Illumina). The purity of RNA was then tested with an Agilent RNA Pico 6000 kit and an Agilent 2100 Bioanalyzer (Agilent Technologies). TruSeq Stranded mRNA Sample Preparation guide (Illumina) was then used to construct the cDNA library.

text: deletion mutant cseE

characteristic: genotype

text: exponential phase

characteristic: growth condition

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

characteristic: replicate

text: Corynebacterium glutamicum

characteristic: title


characteristic: ENA-CHECKLIST

text: Omics Core Facility NGS Unit Medical School OWL & CeBiTec Bielefeld University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: deletion mutant cseE

text: exponential phase

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: deletion mutant SigE

text: exponential phase

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum


characteristic: External Id

text: public

text: ArrayExpress

text: wild type genotype

text: exponential phase

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum


E-MTAB-12458:Deletion mutant cseE

characteristic: INSDC center name

text: public

text: E-MTAB-12458:Deletion mutant cseE

text: ArrayExpress

text: Protocols: The cells were harvested in the exponential growth phase and frozen in liquid nitrogen. Total RNA was isolated from 3 biological replicates of C. glutamicum cells by a Quick-RNA Miniprep Plus kit (Zymo Research). The samples were treated with DNase (Roche Diagnostics) and RNA was purified with an RNA Clean&Concentrator-5 kit (Zymo Research). cDNA library enriched for primary 5′-transcripts according to Peifer-Sancar et al. (2013): I) Depletion of stable RNAs using the Ribo-Zero rRNA removal kit II) RNA fragmentation by metal hydrolysis III) Digestion of non native 5'-Mono/Di-phosphate ends by Terminator 5′-phosphate-dependent exonuclease IV)Conversion of 5′-triphosphates of primary transcript ends to monophosphates to enable adapter ligation V)Full RNA adapter ligation VI)cDNA synthesis by the usage of a loop adapter which hybridizes via a 3′-NNNNNNN-tail to the 3′-end of the RNA fragment VI)Amplification and Indexing by Adapter-specific primer

text: exponential phase

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: deletion mutant cseE

characteristic: strain

text: Deletion mutant cseE


E-MTAB-12458:Deletion mutant SigE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12458:Deletion mutant SigE

text: ArrayExpress

text: exponential phase

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: deletion mutant SigE

text: Deletion mutant SigE


text: public

text: ArrayExpress

text: exponential phase

characteristic: growth condition

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: wild type genotype

text: Wildtype


text: public

tag: Namespace:Institute for Systems medicine with focus on organ interaction

text: mouse gut microbiome

characteristic: broad-scale environmental context

characteristic: collection date

text: house mouse

characteristic: common name

text: 16S rRNA gene amplicon sequencing of V3-V4 region of mouse cecal content; colonization: SPF; sex: male

text: cecal content

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: mouse cecum

characteristic: local environmental context

text: Mus musculus

text: A physiologically-based model of bile acid metabolism in mice

characteristic: project name

text: Mus musculus

text: 16S rRNA gene amplicon sequencing of V3-V4 region on Illumina MiSeq (PE300)

characteristic: sequencing method

text: 16S rRNA gene amplicon sequencing of mouse cecal content


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Systems medicine with focus on organ interaction

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: mouse gut microbiome

text: house mouse

characteristic: description

text: cecal content

text: Germany

text: host-associated

text: mouse cecum

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: mouse gut microbiome

characteristic: broad-scale environmental context

characteristic: collection date

text: house mouse

characteristic: common name

text: 16S rRNA gene amplicon sequencing of V3-V4 region of mouse cecal content; colonization: SPF; sex: female

text: cecal content

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mouse cecum

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

tag: Namespace:Dr. Risch

text: SIB

characteristic: broker name

text: Labormedizinisches Zentrum Dr. Risch, Liebefeld, Switzerland

characteristic: collecting institution

text: Nadia Wohlwend, Faina Wehrli, Dominique Fabien Hilti, Sinem Kas, Martin Risch, Thomas Bodmer, Lorenz Risch

characteristic: collector name

text: Switzerland

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/AG-Risch-1229R15606/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Dr. Risch Ostschweiz AG, Lagerstrasse 30, 9470 Buchs

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1229R15605/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dr. Risch

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: SG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-Risch-1230R15603/2022


text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: AG

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/AG-Risch-1228R15609/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1228R15608/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1229R15611/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-Risch-1229R15607/2022

characteristic: isolate

characteristic: sample capture status


characteristic: GISAID Accession ID

text: Dr. Risch

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-Risch-1229R15610/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dr. Risch

text: public

characteristic: INSDC status

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characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-Risch-1229R15604/2022


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:ETH ZURICH D-BSSE

text: SIB

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Maurice Redondo, Olivier Kobel, Christoph Noppen, Sebastian Kurscheid, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: BS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-ETHZ-38007490/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

tag: Namespace:Institute of Medical Virology, Zürich, Switzerland

characteristic: Submitter Id

text: SIB

text: Stadtspital Triemli, Zürich, Switzerland

characteristic: collection date

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Riccarda Capaul, Guido Bloemberg, Michael Huber, Alexandra Trkola, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba68615/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba68439/2022

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: ETH ZURICH D-BSSE

text: public

text: SIB

text: Switzerland

text: BL

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-ETHZ-38007451/2022

characteristic: isolate

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text: active surveillance not initiated by an outbreak


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

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text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

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text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-ETHZ-38007398/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

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text: Switzerland

text: BL

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-ETHZ-38007391/2022


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: SIB

text: EOC Bellinzona; Via Mirasole 22/A, 6500 Bellinzona

text: Spina Valeria Romina, Gloria Gaudio, Gladys Martinetti Lucchini, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

characteristic: host sex

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text: hCoV-19/Switzerland/TI-EOC-38007571/2022

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

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text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: public

characteristic: SRA accession

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text: Switzerland

characteristic: geographic location (country and/or sea)

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text: Human

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-38007587/2022

characteristic: organism

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characteristic: collecting institution

text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Maurice Redondo, Olivier Kobel, Christoph Noppen, Sebastian Kurscheid, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-38007433/2022


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Riccarda Capaul, Guido Bloemberg, Michael Huber, Alexandra Trkola, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

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text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6867e/2022

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characteristic: Submitter Id

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text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-ETHZ-38007381/2022

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: ETH ZURICH D-BSSE

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

text: Labor team w AG; Blumeneggstrasse 55, 9403 Goldach

characteristic: collecting institution

text: Rebekka Pohl, Monika Bucher, Andreas Lindauer, Andreas Grutsch, Christian Beisel, Tobias Schär, Ina Nissen, Natascha Santacroce, Rebecca Denes, Mirjam Feldkamp, Elodie Burcklen, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Ivan Topolsky, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Pelin Burcak Icer, Matteo Carrara, Shuqing Yu, Franziska Singer, Niko Beerenwinkel, Tanja Stadler

characteristic: collector name

text: Switzerland

text: AR

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AR-ETHZ-38007653/2022

text: Severe acute respiratory syndrome coronavirus 2


characteristic: GISAID Accession ID

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

text: SIB

text: Stadtspital Waid, Zürich, Switzerland

text: Switzerland

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characteristic: host health state

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characteristic: isolate

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characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: ETH ZURICH D-BSSE

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characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-ETHZ-38007511/2022

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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characteristic: broker name

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