characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5214706 of study SRP098349.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Anaerolineae bacterium

text: Microbial Dark Matter project phase II - Metagenome sequencing of Hot spring microbial communities

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerolineae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.105_CONCOCT_v1.1_MAG


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.107_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Nitrospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.113_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured actinobacterium

characteristic: organism

text: uncultured actinobacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.116_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured actinobacterium

characteristic: project name

characteristic: sample derived from

text: uncultured actinobacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.117_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Spirochaeta sp.

characteristic: organism

text: uncultured Spirochaeta sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.118_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Candidatus Peregrinibacteria bacterium

characteristic: project name

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.121_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Ignavibacterium sp.

characteristic: organism

text: uncultured Ignavibacterium sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.122_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Pyrinomonas sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Pyrinomonas sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.126_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Armatimonadetes bacterium

characteristic: organism

text: uncultured Armatimonadetes bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.128_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.133_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Ignavibacteria bacterium

characteristic: organism

text: uncultured Ignavibacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.14_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5214706 of study SRP098349.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Anaerolineales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerolineales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.22_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured actinobacterium

characteristic: organism

text: Microbial Dark Matter project phase II - Metagenome sequencing of Hot spring microbial communities

text: uncultured actinobacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.23_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.3_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Caldilinea sp.

characteristic: organism

text: uncultured Caldilinea sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.31_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Chloroflexi bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Chloroflexi bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.33_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Thermogutta sp.

characteristic: organism

text: uncultured Thermogutta sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.34_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Syntrophaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Syntrophaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.36_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.38_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Chloroflexi bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Chloroflexi bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.4_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Ardenticatenia bacterium

characteristic: organism

text: uncultured Ardenticatenia bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.41_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured archaeon

characteristic: project name

characteristic: sample derived from

text: uncultured archaeon

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.42_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Ignavibacteriales bacterium

characteristic: organism

text: uncultured Ignavibacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.46_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Anoxybacillus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Anoxybacillus sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.47_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5214706 of study SRP098349.

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.48_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Anaerolineae bacterium

text: Microbial Dark Matter project phase II - Metagenome sequencing of Hot spring microbial communities

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerolineae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.5_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.50_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.54_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Ignavibacteriales bacterium

characteristic: organism

text: uncultured Ignavibacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.56_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Chroococcidiopsis sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Chroococcidiopsis sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.57_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured proteobacterium

characteristic: organism

text: uncultured proteobacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.58_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Chloroflexus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Chloroflexus sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.59_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Nitrospiraceae bacterium

characteristic: organism

text: uncultured Nitrospiraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.68_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Nitrospiraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrospiraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.69_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Bacteroidetes bacterium

characteristic: organism

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.72_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Nitrospirales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Nitrospirales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.76_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Bryobacterales bacterium

characteristic: organism

text: uncultured Bryobacterales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.85_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured proteobacterium

characteristic: project name

characteristic: sample derived from

text: uncultured proteobacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.86_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5214706 of study SRP098349.

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Anaerolineae bacterium

characteristic: organism

text: uncultured Anaerolineae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.9_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Anaerolinea sp.

text: Microbial Dark Matter project phase II - Metagenome sequencing of Hot spring microbial communities

characteristic: project name

characteristic: sample derived from

text: uncultured Anaerolinea sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.92_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.94_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: South Africa

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: Candidatus Bathyarchaeota archaeon

characteristic: project name

characteristic: sample derived from

text: Candidatus Bathyarchaeota archaeon

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5214706_bin.95_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: South Africa

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: Thermanaerovibrio acidaminovorans

characteristic: organism

text: Thermanaerovibrio acidaminovorans

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5214706_bin.99_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5468193 of study SRP104831.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Rhodobacterales bacterium

text: Sequencing of microbial communities from the Columbia River estuary to analyze effect of nutrient fluxes

characteristic: project name

characteristic: sample derived from

text: uncultured Rhodobacterales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468193_bin.125_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Rhodobiaceae bacterium

characteristic: organism

text: uncultured Rhodobiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468193_bin.6_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5468194 of study SRP104832.

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Polaribacter sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Polaribacter sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468194_bin.134_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Bacteroidetes bacterium

characteristic: organism

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468194_bin.142_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Bacteroidetes bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Bacteroidetes bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468194_bin.151_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Verrucomicrobia bacterium

characteristic: organism

text: uncultured Verrucomicrobia bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468194_bin.155_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Cellvibrionales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Cellvibrionales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468194_bin.16_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Chitinophagaceae bacterium

characteristic: organism

text: uncultured Chitinophagaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468194_bin.165_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Microbacteriaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Microbacteriaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468194_bin.169_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Acidimicrobium sp.

characteristic: organism

text: uncultured Acidimicrobium sp.

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468194_bin.225_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Rhodobacteraceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Rhodobacteraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468194_bin.239_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Sphingobacteriales bacterium

characteristic: organism

text: uncultured Sphingobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468194_bin.241_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Environmental

characteristic: environment (biome)

text: Aquatic

characteristic: environment (feature)

text: Aquatic

characteristic: environment (material)

text: USA

text: metagenome-assembled genome

characteristic: investigation type

text: aquatic metagenome

text: aquatic metagenome

characteristic: metagenomic source

text: uncultured Cellvibrionales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Cellvibrionales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR5468194_bin.243_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

text: CheckM

text: Environmental

text: Aquatic

text: Aquatic

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: aquatic metagenome

text: aquatic metagenome

text: uncultured Chromatiales bacterium

characteristic: organism

text: Sequencing of microbial communities from the Columbia River estuary to analyze effect of nutrient fluxes

text: uncultured Chromatiales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR5468194_bin.36_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF PERPIGNAN/CNRS

text: public

tag: Namespace:UNIVERSITY OF PERPIGNAN/CNRS

text: thale cress

characteristic: common name

text: 135 Mb

characteristic: estimated size

text: France

text: Seeds were first germinated at 20 °C and after 4 to 7 days seedlings were either transferred to 27 °C under short day or at 37°C under long day condition. Heat treatments were done by transferring plants in pre-heated MLR-352 Plant Growth Chambers (PHCbi Sanyo)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: plant developmental stage

text: in vitro culture MS 1/2 0.5% plant agar

characteristic: plant growth medium

text: leaves

characteristic: plant structure

characteristic: ploidy

text: Arabidopsis thaliana


E-MTAB-11613:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NEWCASTLE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11613:Sample 1

tag: Namespace:NEWCASTLE UNIVERSITY

characteristic: Submitter Id

text: 12PCW, 14PCW, 9PCW

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Samples were collected by the Human Developmental Biology Resource from the clinic and transported to the lab immediately before dissection. Livers were digested for30 mins using collagenase type 4 to create a single cell suspension. Nucleic acids were extracted following the manufacturers guidelines for the 10x Genomics Chromium Single Cell 3' Reagent Kits User Guide (v3.1 Chemistry) (CG000204_ChromiumNextGEMSingleCell3'v3.1_Rev D.pdf).CITE-Seq libraries were amplified following the TotalSeq™-A Antibodies and Cell Hashing with 10x Single Cell 3' Reagent Kit v3 or v3.1 (Single Index) Protocol (https://www.biolegend.com/en-us/protocols/totalseq-a-antibodies-and-cell-hashing-with-10x-single-cell-3-reagent-kit-v3-3-1-protocol). Nucleic acid libraries were constructed following the manufacturers guidelines for the 10x Genomics Chromium Single Cell 3' Reagent Kits User Guide (v3.1 Chemistry) (CG000204_ChromiumNextGEMSingleCell3'v3.1_Rev D.pdf).CITE-Seq libraries were constructed following the TotalSeq™-A Antibodies and Cell Hashing with 10x Single Cell 3' Reagent Kit v3 or v3.1 (Single Index) Protocol (https://www.biolegend.com/en-us/protocols/totalseq-a-antibodies-and-cell-hashing-with-10x-single-cell-3-reagent-kit-v3-3-1-protocol).

characteristic: description

text: late embryonic stage

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: immunophenotype

text: F94, F96, F109

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male, female, male

characteristic: sex

text: Sample 1


E-MTAB-11613:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NEWCASTLE UNIVERSITY

text: public

text: E-MTAB-11613:Sample 2

text: 12PCW, 14PCW, 9PCW

text: ArrayExpress

text: human

characteristic: common name

text: late embryonic stage

text: normal

text: unsorted

text: F94, F96, F109

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male, female, male

text: Sample 2

characteristic: title


E-MTAB-11613:Sample 3

characteristic: External Id

text: NEWCASTLE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11613:Sample 3

text: 17PCW, 17PCW, 16PCW

text: ArrayExpress

text: human

text: late embryonic stage

text: normal

text: F90, F103, F107

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female, female, male

text: Sample 3


E-MTAB-11613:Sample 4

text: NEWCASTLE UNIVERSITY

text: public

text: E-MTAB-11613:Sample 4

characteristic: Submitter Id

text: 17PCW, 17PCW, 16PCW

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: late embryonic stage

characteristic: developmental stage

text: normal

characteristic: disease

text: F90, F103, F107

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female, female, male

text: Sample 4


E-MTAB-11613:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NEWCASTLE UNIVERSITY

text: public

text: E-MTAB-11613:Sample 5

text: 17PCW, 17PCW, 16PCW

text: ArrayExpress

text: human

text: late embryonic stage

text: normal

text: unsorted

characteristic: immunophenotype

text: F90, F103, F107

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female, female, male

characteristic: sex

text: Sample 5


E-MTAB-11613:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NEWCASTLE UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-11613:Sample 6

text: 17PCW, 17PCW, 16PCW

text: ArrayExpress

text: human

characteristic: common name

text: late embryonic stage

text: normal

text: unsorted

text: F90, F103, F107

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female, female, male

text: Sample 6

characteristic: title


text: EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1, EukCC2

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685130 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: uncultured Leotiomyceta

text: Reductions in genome size and complexity are a hallmark of obligate symbioses. The mitochondrial genome displays clear examples of these reductions, with the ancestral alpha-proteobacterial genome size and gene number having been reduced by orders of magnitude in most descendent modern mitochondrial genomes. Here, we examine patterns of mitochondrial evolution specifically looking at intron size, number, and position across 58 species from 21 genera of lichenized Ascomycete fungi, representing a broad range of fungal diversity and niches. Our results show that the cox1 gene always contained the highest number of introns out of all the mitochondrial protein-coding genes, that high intron sequence similarity can be maintained between different genera, and that lichens have undergone at least two instances of complete, genome-wide intron loss consistent with evidence for genome streamlining via loss of parasitic, noncoding DNA, in Phlyctis boliviensis and Graphis lineola. Notably, however, lichenized fungi have not only undergone intron loss but in some instances have expanded considerably in size due to intron proliferation (e.g., Alectoria fallacina and Parmotrema neotropicum), even between closely related sister species (e.g., Cladonia). These results shed light on the highly dynamic mitochondrial evolution that is occurring in lichens and suggest that these obligate symbiotic organisms are in some cases undergoing recent, broad-scale genome streamlining via loss of protein-coding genes as well as noncoding, parasitic DNA elements.

characteristic: project name

characteristic: sample derived from

text: uncultured Leotiomyceta

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685130_bin.1_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1, EukCC2

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685136 of study SRP305791.

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: uncultured Leotiomyceta

characteristic: organism

text: uncultured Leotiomyceta

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685136_bin.1_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685140 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: uncultured Leotiomyceta

characteristic: project name

characteristic: sample derived from

text: uncultured Leotiomyceta

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685140_bin.9_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1, EukCC2

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685148 of study SRP305791.

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: Trebouxia sp. A1-2

characteristic: organism

text: Trebouxia sp. A1-2

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685148_bin.1_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

text: CONCOCT v1.1, EukCC2

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685149 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: Coccomyxa subellipsoidea

characteristic: project name

characteristic: sample derived from

text: Coccomyxa subellipsoidea

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685149_bin.1_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1, EukCC2

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: uncultured Leotiomyceta

characteristic: organism

text: uncultured Leotiomyceta

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685149_bin.3_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

text: CONCOCT v1.1, EukCC2

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685150 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: uncultured Leotiomyceta

characteristic: project name

characteristic: sample derived from

text: uncultured Leotiomyceta

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685150_bin.2_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685154 of study SRP305791.

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: uncultured Leotiomyceta

characteristic: organism

text: uncultured Leotiomyceta

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685154_bin.12_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

text: CONCOCT v1.1, EukCC2

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685157 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: uncultured Lecanoromycetes

characteristic: project name

characteristic: sample derived from

text: uncultured Lecanoromycetes

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685157_bin.1_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1, EukCC2

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685158 of study SRP305791.

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: uncultured Leotiomyceta

characteristic: organism

text: Reductions in genome size and complexity are a hallmark of obligate symbioses. The mitochondrial genome displays clear examples of these reductions, with the ancestral alpha-proteobacterial genome size and gene number having been reduced by orders of magnitude in most descendent modern mitochondrial genomes. Here, we examine patterns of mitochondrial evolution specifically looking at intron size, number, and position across 58 species from 21 genera of lichenized Ascomycete fungi, representing a broad range of fungal diversity and niches. Our results show that the cox1 gene always contained the highest number of introns out of all the mitochondrial protein-coding genes, that high intron sequence similarity can be maintained between different genera, and that lichens have undergone at least two instances of complete, genome-wide intron loss consistent with evidence for genome streamlining via loss of parasitic, noncoding DNA, in Phlyctis boliviensis and Graphis lineola. Notably, however, lichenized fungi have not only undergone intron loss but in some instances have expanded considerably in size due to intron proliferation (e.g., Alectoria fallacina and Parmotrema neotropicum), even between closely related sister species (e.g., Cladonia). These results shed light on the highly dynamic mitochondrial evolution that is occurring in lichens and suggest that these obligate symbiotic organisms are in some cases undergoing recent, broad-scale genome streamlining via loss of protein-coding genes as well as noncoding, parasitic DNA elements.

text: uncultured Leotiomyceta

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685158_bin.1_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685159 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: Coccomyxa subellipsoidea

characteristic: project name

characteristic: sample derived from

text: Coccomyxa subellipsoidea

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685159_bin.84_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685160 of study SRP305791.

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: uncultured Leotiomyceta

characteristic: organism

text: uncultured Leotiomyceta

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685160_bin.30_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685177 of study SRP305791.

text: Algae

characteristic: environment (biome)

text: Green algae

characteristic: environment (feature)

text: Ectosymbionts

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: lichen metagenome

text: lichen metagenome

characteristic: metagenomic source

text: uncultured Leotiomyceta

characteristic: project name

characteristic: sample derived from

text: uncultured Leotiomyceta

text: NextSeq 550

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13685177_bin.4_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1, EukCC2

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13685180 of study SRP305791.

characteristic: description

text: Algae

text: Green algae

text: Ectosymbionts

text: USA

text: not provided

text: not provided

text: metagenome-assembled genome

text: lichen metagenome

text: lichen metagenome

text: uncultured Leotiomyceta

characteristic: organism

text: uncultured Leotiomyceta

text: NextSeq 550

text: multi-marker approach

text: Metagenome-assembled genome: SRR13685180_bin.1_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: metaSPAdes v3.14.1

text: Default

text: CONCOCT v1.1, EukCC2

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757804 of study ERP118359.

text: Engineered

characteristic: environment (biome)

text: Food production

characteristic: environment (feature)

text: Food production

characteristic: environment (material)

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: food production metagenome

text: food production metagenome

characteristic: metagenomic source

text: Kluyveromyces marxianus

text: Cotter Lab FF study

characteristic: project name

characteristic: sample derived from

text: Kluyveromyces marxianus

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR4757804_bin.1_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.14.1

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757809 of study ERP118359.

characteristic: description

text: Engineered

text: Food production

text: Food production

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: food production metagenome

text: food production metagenome

text: Wickerhamiella sorbophila

characteristic: organism

text: Cotter Lab FF study

text: Wickerhamiella sorbophila

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR4757809_bin.16_CONCOCT_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: metaSPAdes v3.14.1

text: Default

text: CONCOCT v1.1

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: Engineered

characteristic: environment (biome)

text: Food production

characteristic: environment (feature)

text: Food production

characteristic: environment (material)

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: food production metagenome

text: food production metagenome

characteristic: metagenomic source

text: Kazachstania saulgeensis

text: Cotter Lab FF study

characteristic: project name

characteristic: sample derived from

text: Kazachstania saulgeensis

text: NextSeq 500

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: ERR4757809_bin.21_CONCOCT_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.14.1

characteristic: assembly software

text: Default

characteristic: binning parameters

text: CONCOCT v1.1

characteristic: binning software

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR4757816 of study ERP118359.

characteristic: description

text: Engineered

text: Food production

text: Food production

text: not provided

text: not provided

text: not provided

text: metagenome-assembled genome

text: food production metagenome

text: food production metagenome

text: Brettanomyces bruxellensis

characteristic: organism

text: Cotter Lab FF study

text: Brettanomyces bruxellensis

text: NextSeq 500

text: multi-marker approach

text: Metagenome-assembled genome: ERR4757816_bin.32_CONCOCT_v1.1_MAG

characteristic: title