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text: Georgia State University

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text: NicolasLoiseauOK42FB1NAHFDNANABothRunsOKOK

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text: Georgia State University

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text: NicolasLoiseauOK45FB1NAHFDNANABothRunsOKOK

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text: NicolasLoiseauOK47FB1NAHFDNANABothRunsOKOK

text: house mouse

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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characteristic: title


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text: Georgia State University

text: public

characteristic: SRA accession

text: NicolasLoiseauOK48FB1NAHFDNANABothRunsOKOK

text: house mouse

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text: feces

text: France

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characteristic: investigation type

text: Mus musculus

characteristic: organism

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text: Mus musculus

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text: public

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tag: Namespace:Institute of Molecular Genetics of the Czech Academy of Sciences

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mix of epithelial cell of small intestine and small intestinal lamina propria CD45+ cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Mice were treated by peroral colonization with 50 microliters of cecal content from SFB monoassociated animals at 21 and 22 days of age or left untreated. Mice were euthanized by cervical dislocation, their small intestine was dissected. Epithelial cells were isolated from small intestines by serial incubation in HBSS + 3% FBS + 2mM EDTA followed by digestion in TrypLE Express enzyme. Intraepithelial cells were isolated in the same manner, but due to their lower frequency in the epithelial fraction they were enriched using 40%/80% percol gradient centrifugation. Lamina propria cells were isolated by the same protocol, but the epithelial fraction was discarded and remaining tissue was used further. This tissue was then minced, digested in collagenase D and DNAse I and immune cells were enriched using 40%/80% percol gradient centrifugation. Single cell suspension of intestinal epithelial cells, lamina propria cells or intraepithelial cells was sorted by flow cytometry as live, single cells. On the top of that, epithelial cells were sorted as CD45- EpCAM+, lamina propria cells and intraepithelial cells were sorted as CD45+. First-strand cDNA was extracted from cell suspension during library preparation routine using Chromium next gem single-cell 3′ reagent kit (version 3.1). Single-cell RNA-seq libraries were prepared using Chromium controller instrument and Chromium Next Gem single-cell 3’ reagent kit version 3.1 (both 10X Genomics, Pleasanton, CA, USA) according to the manufacturer’s protocol targeting 4000 cells per sample.

characteristic: description

text: juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: A

characteristic: individual

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Genetics of the Czech Academy of Sciences

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: juvenile

text: wild type genotype

text: B

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

characteristic: title


characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: house mouse

characteristic: common name

text: juvenile

text: wild type genotype

text: C

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: female


text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: D

characteristic: individual

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

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characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: mix of epithelial cell of small intestine and small intestinal intraepithelial CD45+ cell

text: house mouse

text: juvenile

text: wild type genotype

text: E

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

characteristic: title


characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: small intestinal lamina propria CD45+ cell

characteristic: cell type

text: house mouse

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text: juvenile

text: wild type genotype

text: E

text: Mus musculus

text: Mus musculus

text: small intestine

text: Mus musculus

text: female


text: public

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text: house mouse

characteristic: description

text: juvenile

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: F

characteristic: individual

text: Mus musculus

text: Mus musculus

text: small intestine

characteristic: organism part

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

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characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: juvenile

text: wild type genotype

text: F

text: Mus musculus

characteristic: organism

text: Mus musculus

text: small intestine

text: Mus musculus

text: female

characteristic: title


text: MNHN

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: scientific name


text: MNHN

text: public

text: human

text: female

characteristic: description

text: Homo sapiens

text: Homo sapiens


E-MTAB-11976:Sample 18

text: public

text: E-MTAB-11976:Sample 18

tag: Namespace:Division of Stem Cells and Cancer, German Cancer Research Center (DKFZ) and DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM gGmbH), 69120 Heidelberg, Germany

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: AML samples were collected from diagnostic peripheral blood (PB) aspirations at the University hospital in Heidelberg in accordance with the Declaration of Helsinki after obtaining written consent from each patient. The project was approved by the Ethics Committee of the Medical Faculty of Heidelberg (S-169/217). PB mononuclear cells (MNCs) were isolated by density gradient centrifugation using Ficoll Paque Plus (GE Healthcare, cat # GE17-1440-03), and stored in liquid nitrogen until further use. Primary AML cells were stained with a total of ten fluorescent cell surface antibodies (see supplementary table X). Cells were sorted into four populations according to CD11b, CD64 and GPR56 expression within the lineage-negative gate. Cells from each population and from lineage-neagtive bulk were sorted directly into RNA extraction buffer (Thermo Fisher, cat # KIT0214), snap-frozen and stored at -80 °C until RNA extraction. RNA extraction and purification of FACS-sorted cells was done using PicoPure RNA Isolation Kit according to manufacturer’s instructions (Thermo Fisher, cat # KIT0214). Whole transcriptome amplification was performed using a modified smart-seq2 protocol (Picelli et al 2014), with 5μl of a modified RT buffer containing 1× SMART First Strand Buffer (Takara Bio Clontech, cat # 639538), 1 mM dithiothreitol (Takara Bio Clontech), 1 μM template switching oligo (IDT), 10 U μl−1 SMARTScribe (Takara Bio Clontech, cat # 639538) and 1 U μl−1 RNasin Plus RNase Inhibitor (Promega, cat # N2615). Tagmentation of cDNA was done using Nextera XT DNA Library Preparation Kit (Illumina, cat # FC-121-1030).

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: monocyte-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemic stem cell

characteristic: sampling site

text: Homo sapiens

text: Sample 18


E-MTAB-11976:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Stem Cells and Cancer, German Cancer Research Center (DKFZ) and DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM gGmbH), 69120 Heidelberg, Germany

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-11976:Sample 22

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 22


E-MTAB-11976:Sample 23

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11976:Sample 23

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 23

characteristic: title


E-MTAB-11976:Sample 26

text: public

text: E-MTAB-11976:Sample 26

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: monocyte-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 26


E-MTAB-11976:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11976:Sample 27

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemic stem cell

characteristic: sampling site

text: Homo sapiens

text: Sample 27


E-MTAB-11976:Sample 29

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-11976:Sample 29

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 29


E-MTAB-11976:Sample 19

text: public

characteristic: INSDC status

text: E-MTAB-11976:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 19

characteristic: title


E-MTAB-11976:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11976:Sample 20

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: primative-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 20


E-MTAB-11976:Sample 21

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11976:Sample 21

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemic stem cell

characteristic: sampling site

text: Homo sapiens

text: Sample 21


E-MTAB-11976:Sample 24

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 24


E-MTAB-11976:Sample 25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11976:Sample 25

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 25

characteristic: title


E-MTAB-11976:Sample 28

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11976:Sample 28

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: primative-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 28


E-MTAB-11976:Sample 30

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11976:Sample 30

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemic stem cell

characteristic: sampling site

text: Homo sapiens

text: Sample 30


E-MTAB-11976:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 31


E-MTAB-11976:Sample 32

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11976:Sample 32

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 32

characteristic: title


E-MTAB-11976:Sample 33

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11976:Sample 33

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: primative-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: leukemic stem cell

text: Homo sapiens

text: Sample 33


E-MTAB-11976:Sample 34

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11976:Sample 34

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: leukemic stem cell

characteristic: sampling site

text: Homo sapiens

text: Sample 34


E-MTAB-11976:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 1


E-MTAB-11976:Sample 10

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11976:Sample 10

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-11976:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11976:Sample 12

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: monocyte-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 12


E-MTAB-11976:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-11976:Sample 5

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: mature blast cell

characteristic: sampling site

text: Homo sapiens

text: Sample 5


E-MTAB-11976:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 6


E-MTAB-11976:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11976:Sample 9

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: monocyte-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 9

characteristic: title


E-MTAB-11976:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11976:Sample 11

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: primative-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 11


E-MTAB-11976:Sample 13

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-11976:Sample 13

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: mature blast cell

characteristic: sampling site

text: Homo sapiens

text: Sample 13


E-MTAB-11976:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 14


E-MTAB-11976:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-11976:Sample 15

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 15

characteristic: title


E-MTAB-11976:Sample 16

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11976:Sample 16

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: primative-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 16


E-MTAB-11976:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-11976:Sample 17

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: mature blast cell

characteristic: sampling site

text: Homo sapiens

text: Sample 17


E-MTAB-11976:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 2


E-MTAB-11976:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-11976:Sample 3

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-11976:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-11976:Sample 4

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

text: primative-like acute myeloid leukemia

characteristic: disease staging

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 4


E-MTAB-11976:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-11976:Sample 7

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: mature blast cell

characteristic: sampling site

text: Homo sapiens

text: Sample 7


E-MTAB-11976:Sample 8

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11976:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: acute myeloid leukemia

text: primative-like acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: mature blast cell

text: Homo sapiens

text: Sample 8


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PhD student

text: public

tag: Namespace:PhD student

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bread wheat

characteristic: common name

text: Cadenza

characteristic: cultivar

text: Protocols: In this study, the basal node is called the 0.5 cm long section from the base of the main shoot, which includes the shoot apical meristem, lateral buds and leaf meristems. After removing all the roots from the shoot, the outgrown primary tillers were also carefully removed, and 0.5 cm of the main shoot base was dissected. Samples were quickly frozen in liquid nitrogen and stored at -80 oC until processing. Tissue samples from 6 plants were pooled per biological replicated. Plants were grown hydroponically in a controlled environment chamber using a custom hydroponic system. Individual plants were grown held by foam buds on top of 1 L black pots containing the nutrient solution. The nutrient solution was aerated throughout the experiment by an aeration pump tubing system. The growing conditions were 20/10 oC day and night temperature, respectively, and 14 h day length. Lighting was provided by fluorescent bulbs at an intensity of 550 µmol m-2 sec-1. The humidity was stable at 65% during the day and 75% during the night. Total RNA was extracted from approximately 100 mg of ground frozen tissue using TRIzol reagent (Invitrogen) following the manufacturer's protocol. To ensure no DNA carryover, DNase treatment was performed using RQ1 RNase-Free DNase (Promega). After DNase treatment RNA was further purified by phenol/chloroform/isoamyl-alcohol purification. Extracted total RNA from basal node samples was further purified with Plant RNeasy kit (Qiagen) following the provided RNA clean-up protocol. Quality control, poly-A selection for rRNA removal, library preparation, multiplexing were performed by Azenta/Genewiz UK according to their standard workflow. Briefly, RNA library preparation was prepared using NEBNext Ultra II Library Prep Kit for Illumina following the manufacturer's protocol (NEB). Firstly, oligo-dt beads were used for mRNA enrichment, and the mRNAs were fragmented for 15 min at 94 oC. First and second strand cDNA were subsequently synthesized. Indexed adapters were ligated to cDNA fragments after adenylation of the 3' end of the cDNA fragments. Limited cycle PCR was used for library amplification. Sequencing libraries were validated using NGS Kit on the Agilent 5300 Fragment Analyzer (Agilent Technologies) and quantified by using Qubit 4.0 Fluorometer (Invitrogen) or equivalent.

characteristic: description

text: 2 formation of axillary shoot stage

text: none - nitrogen 10 millimolar; phosphorous 1 millimolar

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: Triticum aestivum

text: Triticum aestivum

text: stem node

text: basal node

text: Triticum aestivum

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PhD student

characteristic: INSDC last update

text: public

text: ArrayExpress

text: bread wheat

text: Cadenza

text: 2 formation of axillary shoot stage

characteristic: developmental stage

text: low nitrogen - nitrogen 0.1 millimolar; phosphorous 1 millimolar

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: stem node

characteristic: organism part

text: basal node

characteristic: sampling site

text: Triticum aestivum


text: PhD student

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: bread wheat

text: Cadenza

text: 2 formation of axillary shoot stage

text: low phosphorous - nitrogen 10 millimolar; phosphorous 0.01 millimolar

text: wild type genotype

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: stem node

text: basal node

text: Triticum aestivum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Royal Zoological Society of Scotland

text: public

tag: Namespace:Royal Zoological Society of Scotland

text: Al Ain Zoo

characteristic: collected by

text: Sample from captive addax

text: UAE

characteristic: geographic location (region and locality)

text: Addax nasomaculatus

text: Addax nasomaculatus

characteristic: scientific name

text: Female

characteristic: sex

text: blood EDTA

characteristic: tissue type


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Zoological Society of Scotland

characteristic: INSDC last update

text: public

text: EAZA

text: Sample from captive addax

characteristic: description

text: Europe

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Female

text: Blood

characteristic: title


text: Royal Zoological Society of Scotland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EAZA

text: Sample from captive addax

text: Europe

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Male

text: Blood


text: Royal Zoological Society of Scotland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Al Ain Zoo

text: Sample from captive addax

text: UAE

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Female

text: Blood


text: Royal Zoological Society of Scotland

text: public

characteristic: Submitter Id

text: Al Ain Zoo

text: Sample from captive addax

text: UAE

text: Addax nasomaculatus

characteristic: organism

text: Addax nasomaculatus

text: Male

text: Blood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Royal Zoological Society of Scotland

text: public

text: Marwel Wildlife and Direction G�n�rale des For�ts, Tunisia

text: Sample from semi-wild addax

text: Tunisia

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Male

text: Tissue


text: Royal Zoological Society of Scotland

text: public

characteristic: collected by

text: Sample from semi-wild addax

text: Tunisia

characteristic: geographic location (region and locality)

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Female

text: Tissue


text: Royal Zoological Society of Scotland

text: public

text: Environment Agency - Abu Dhabi

text: Sample from captive addax

text: UAE

text: Addax nasomaculatus

text: Addax nasomaculatus

characteristic: scientific name

text: Female

characteristic: sex

text: Blood


characteristic: ENA-LAST-UPDATE

text: Royal Zoological Society of Scotland

text: public

text: Environment Agency - Abu Dhabi

text: Sample from captive addax

text: UAE

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Male

text: Blood

characteristic: tissue type


characteristic: External Id

text: Royal Zoological Society of Scotland

characteristic: INSDC last update

text: public

text: Environment Agency - Abu Dhabi

text: Sample from captive addax

text: UAE

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Blood


text: Royal Zoological Society of Scotland

text: public

text: EAZA

text: Sample from captive addax

characteristic: description

text: Europe

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Female

text: Blood/Serum

characteristic: title


text: Royal Zoological Society of Scotland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EAZA

text: Sample from captive addax

text: Europe

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Male

text: Blood/Serum


text: Royal Zoological Society of Scotland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EAZA

text: Sample from captive addax

text: Europe

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Female

text: Blood/tissue


text: Royal Zoological Society of Scotland

text: public

characteristic: Submitter Id

text: EAZA

text: Sample from captive addax

text: Europe

text: Addax nasomaculatus

characteristic: organism

text: Addax nasomaculatus

text: Male

text: Blood/tissue


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Royal Zoological Society of Scotland

text: public

text: AZA

text: Sample from captive addax

text: USA

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Female


text: Royal Zoological Society of Scotland

text: public

text: AZA

characteristic: collected by

text: Sample from captive addax

text: USA

characteristic: geographic location (region and locality)

text: Addax nasomaculatus

text: Addax nasomaculatus

text: Male


text: Infravec

text: public

text: African malaria mosquito

characteristic: common name

text: Study of gut microbiota composition in mosquitoes fed on blood and blood free diets over 3 generations. The aim is to determine if a blood free chemically defined diet has any impact on the genomic architecture and the microbiome of Anopheles females in comparison with standard bloodmeal.

characteristic: infravec request number

text: Anopheles coluzzii

text: Anopheles coluzzii

characteristic: study accession

text: Towards blood-free Anopheles rearing and control.


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Infravec

text: public

text: Asian tiger mosquito

text: Determination of the pyrethroid resistance status of Ae. Albopictus in Itlay, and the effects on host microbiota.

text: Aedes albopictus

text: Aedes albopictus

text: Role of the mosquito microbiota in insecticide resistance. A seminal study of invasive Aedes populations in Italy


text: Infravec

characteristic: INSDC last update

text: public

text: African malaria mosquito

text: Study of introgression and gene-flow between the two major malaria vectorspecies, Anopheles gambiae and An. coluzzii from one coastal and one inland site in Ivory Coast, with the aim to evaluate species composition and presence of An.gambiae/An.coluzzii hybrids in thesetwo different ecological contexts.

characteristic: description

text: Anopheles gambiae str. PEST

text: Anopheles gambiae str. PEST

text: Investigation on levels of admixture between malaria vectors in Ivory Coast


text: Infravec

characteristic: INSDC center name

text: public

text: Rhipicephalus bursa

text: Assessment of the bacterial community in Rhipicephalus bursa (main vector of Babesia ovis) , including information on relative abundance regarding uninfected R.bursa and B. ovis-R. bursa salivary glands and midguts.

text: Rhipicephalus bursa

text: Rhipicephalus bursa

text: Metagenomics to characterize pathogen effect on R. bursa tissue specific microbiome

characteristic: title


text: University of Brescia

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:University of Brescia

characteristic: collection date

text: E.coli liquor

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: isolate

text: human liquor

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-102251659426996:FMHippo_0801_H1-1

tag: Namespace:Sun Yat-sun University Zhongshan Ophathlamic Center

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: crab-eating macaque

text: Protocols: Total 8 monkeys (4-15 years old, 8 males and 2 females, Macaca fascicularis) were used in the current project. All procedures complied with the NIH Guide for the Care and Use of Laboratory Animals approved by Sun Yat-sen University. Following 2 weeks of adaptive housing in the institutional animal facility, animals were anesthetized with a lethal dose of sodium pentobarbital. Animals were transcardially perfused with 2 liters of artificial cerebrospinal fluid (ACSF, in mM: 125 NaCl, 25 NaHCO3, 1 NaH2PO4, 2 KCl, 25 D-Glucose, 2 CaCl2, 1 MgCl2, 5 sodium l-ascorbate, 3 sodium pyruvate, 0.01 taurine, 2 thiourea, 1 kynurenic acid, 0.1 DL-AP5, and 1x10-3 tetrodotoxin). The flow of perfusion fluid was adjusted so that the perfusion finished within approximately 40 minutes. The brain was removed from the skull immediately and a block of tissue containing the hippocampus was cut off. The position of hippocampus referred to the atlas of the rhesus monkey brain (Saleem and Logothetis, 2012). The tissue block was kept in the ACSF and sectioned on a vibratome (VT1200S, Leica) in 300 um thick slices. The adherent tissues around the hippocampus of each slice were removed on ice and only the regions of interest were kept for dissociation. 10X single cell isolation protocol v2 10X Genomics Chromium platform v2

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Macaca fascicularis

characteristic: organism

text: Macaca fascicularis

text: brain

characteristic: organism part

text: hippocampus

characteristic: sampling site

text: Macaca fascicularis

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Angers

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Angers

text: Sediment

characteristic: description

text: Yes

text: France

characteristic: geographic location (country and/or sea)

text: 47,5701, -2,9422

text: uncultured eukaryote

text: s14F1 s15r

characteristic: pcr primers

text: uncultured eukaryote

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Angers

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sediment

text: Yes

text: France

text: 47,57, -2,9411

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,5706, -2,9398

text: uncultured eukaryote

characteristic: organism

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,5845, -2,9618

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,5848, -2,9612

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,5833, -2,9552

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6162, -2,9534

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6163, -2,9525

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6348, -2,9645

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6351, -2,9641

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6462, -2,9719

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6561, -2,9791

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6678, -2,9711

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6678, -2,971

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,5835, -3,0248

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6251, -3,0323

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6101, -3,0246

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,6006, -3,0293

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,8827, -4,1155

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,9074, -4,1439

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,9319, -4,1137

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,9724, -4,1003

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,7716, -3,529

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,8046, -3,5268

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 47,7904, -3,5312

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,2922, -4,2617

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,2755, -4,2828

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,2461, -4,2006

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,3958, -4,3825

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,4066, -4,3452

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,4246, -4,305

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: University of Angers

text: public

text: Sediment

text: Yes

text: France

text: 48,4448, -4,2723

text: uncultured eukaryote

text: s14F1 s15r

text: uncultured eukaryote


text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

tag: Namespace:Clinical Bioinformatics Area

text: Servicio de Microbiologia, Hospital La Axarquía, Vélez-Málaga, Spain

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status

text: AND13408, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli

text: not provided

characteristic: description

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

text: AND13409, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: VICTOR CHANG CARDIAC RESEARCH INSTITUTE

text: public

characteristic: SRA accession

tag: Namespace:VICTOR CHANG CARDIAC RESEARCH INSTITUTE

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Liver specimens were obtained from QSi5 and 129T2/SvEms mice. Genomic DNA was extracted using the phenol-chloroform extraction method. 200ng of DNA was mechanically fragmented using LE220 Covaris (Covaris, Woburn, USA) to approximately 450 base pair inserts followed by library preparation using the Seqlab TruSeq Nano DNA HT kit (20000903, Illumina, San Diego, USA). Library preparation was performed according to manufacturer’s instructions which included end repair, library size selection, 3’ end polyadenylation, adaptor ligation, purification of ligated fragments, enrichment of ligated fragments by PCR and a final purification of amplified DNA library. Library fragment sizes were reviewed using the LabChip GX (Perkin Elmer, Waltham, USA) to evaluate library size and adapter dimer presence before the library concentration was determined via quantitative real time PCR using the KAPA library quantification kits (KK4824, Roche, Basel, Switzerland) on the QuantStudio7 or ViiA7 (Thermo Fisher Scientific, Waltham, USA). All libraries were normalised before sequencing.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: not available

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Gardens, Kew

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Royal Botanic Gardens, Kew

text: Gorgonidium intermedium

text: Gorgonidium intermedium

text: NCY003860 (NCY); NCY003860

text: Gorgonidium intermedium


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanic Gardens, Kew

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Johns, R.J.

characteristic: collectorNo

text: unidentified

text: unidentified

text: Johns, R.J. 7107 (K); K000787557

text: Colobogynium variegatum

characteristic: title


text: Royal Botanic Gardens, Kew

text: public

characteristic: Submitter Id

text: Kazuya Nakamoto

text: unidentified

text: unidentified

text: AR-3922 (UNIMAS)

text: Hera sp. - AR-3922 (UNIMAS)


text: Royal Botanic Gardens, Kew

text: public

text: Croat, T.B.

text: unidentified

text: unidentified

text: Croat, T.B. 68753 (MO); MO-1006506

text: Chlorospatha croatiana


text: Royal Botanic Gardens, Kew

text: public

text: Bogner

text: unidentified

text: unidentified

text: Bogner 1995 (MO); MO-1204678

text: Bognera recondita


text: Royal Botanic Gardens, Kew

text: public

text: Carvalho et al.

text: MO

text: unidentified

text: unidentified

text: Carvalho et al. s.n. (MO)

text: Zomicarpa steigeriana


text: Royal Botanic Gardens, Kew

text: public

text: Redden et al.

text: MO

text: unidentified

text: unidentified

text: Redden et al. 6566 (MO)

text: Jasarum steyermarkii


text: Royal Botanic Gardens, Kew

text: public

text: Boyce

text: Nephthytis bintuluensis

text: Nephthytis bintuluensis

text: Boyce 727 (K); K001275476

text: Nephthytis bintuluensis


E-MTAB-12044:Sample 1

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 1

tag: Namespace:Wageningen University and Research

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

text: Protocols: Upon inoculation with M. incognita, the locations of the root-tips in the infected and uninfected plants were marked on the plates. At the moment of collection (1, 2, 3, 4, 7, and 10 days post inoculation) this allowed for harvesting similar tissue in the mock-infected plants when compared to the infected plants. Approximately 50-90 galls per genotype per timepoint were dissected and kept in liquid nitrogen / -80°C storage until the moment RNA was isolated. Tomato, Solanum lycopersicum (accessions RF004, RF005, RF008, RF022, RF023, RF029, RF032, RF036, RF041, and RF096) seeds were incubated for three days in tap water at 4°C in the dark. Seeds were sterilized by washing with 70% (v/v) ethanol and subsequently with bleach 2.5% (v/v). Then, seeds were washed in sterile tap water and transferred to plates with MS20 medium and kept at 24°C in 16h light/8h dark. Seedlings were transferred to a fresh MS20 plate, one plant per plate. Infection was done with 10-days old seedlings. After addition of 120 J2s, plates were kept in the dark for two days to allow infection. Thereafter plates were again kept in a 16h light/8h dark regime. RNA was using a Maxwell® 16 AS2000 instrument with a Maxwell® 16 LEV Plant RNA Kit (both Promega Corporation, Madison, WI, USA) following the manufacturer’s instructions. RNA samples were stored at -80 ℃ until further use. After the total RNA extraction and DNase I treatment, magnetic beads with Oligo (dT) are used to isolate mRNA. Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. The suitable fragments are size-selected for the PCR amplification as templates.

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 1


E-MTAB-12044:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12044:Sample 10

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 10


E-MTAB-12044:Sample 100

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 100

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 100

characteristic: title


E-MTAB-12044:Sample 101

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 101

text: ArrayExpress

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 101


E-MTAB-12044:Sample 102

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-12044:Sample 102

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 102


E-MTAB-12044:Sample 103

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 103

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 103


E-MTAB-12044:Sample 104

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 104

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 104

characteristic: title


E-MTAB-12044:Sample 105

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 105

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 105


E-MTAB-12044:Sample 106

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 106

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 106


E-MTAB-12044:Sample 107

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 107

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 107


E-MTAB-12044:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 11

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 11

characteristic: title


E-MTAB-12044:Sample 12

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 12


E-MTAB-12044:Sample 13

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 13

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 13


E-MTAB-12044:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 14

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 14


E-MTAB-12044:Sample 15

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 15

characteristic: title


E-MTAB-12044:Sample 16

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 16

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 16


E-MTAB-12044:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 17

text: ArrayExpress

text: tomato

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 17


E-MTAB-12044:Sample 18

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 18


E-MTAB-12044:Sample 19

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 19

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 19

characteristic: title


E-MTAB-12044:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 2

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 2


E-MTAB-12044:Sample 20

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 20


E-MTAB-12044:Sample 21

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 21

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 21


E-MTAB-12044:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 22

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 22

characteristic: title


E-MTAB-12044:Sample 23

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 23

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 23


E-MTAB-12044:Sample 24

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 24

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 24


E-MTAB-12044:Sample 25

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 25

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 25


E-MTAB-12044:Sample 26

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 26

characteristic: title


E-MTAB-12044:Sample 27

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 27

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 27


E-MTAB-12044:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 28

text: ArrayExpress

text: tomato

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 28


E-MTAB-12044:Sample 29

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 29

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 29


E-MTAB-12044:Sample 3

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 3

characteristic: title


E-MTAB-12044:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-12044:Sample 30

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 30


E-MTAB-12044:Sample 31

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: tomato

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 31


E-MTAB-12044:Sample 32

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 32

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 32


E-MTAB-12044:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-12044:Sample 33

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 33

characteristic: title


E-MTAB-12044:Sample 34

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-12044:Sample 34

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 34


E-MTAB-12044:Sample 35

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 35

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 35


E-MTAB-12044:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-12044:Sample 36

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 36


E-MTAB-12044:Sample 37

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 37

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 37

characteristic: title


E-MTAB-12044:Sample 38

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 38

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 38


E-MTAB-12044:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

characteristic: INSDC center name

text: public

text: E-MTAB-12044:Sample 39

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 39


E-MTAB-12044:Sample 4

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 4

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 4


E-MTAB-12044:Sample 40

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 40

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 40

characteristic: title


E-MTAB-12044:Sample 41

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 41

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 41


E-MTAB-12044:Sample 42

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 42

text: ArrayExpress

text: tomato

characteristic: cultivar

text: plant structure development stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 42


E-MTAB-12044:Sample 43

text: Wageningen University and Research

text: public

characteristic: SRA accession

text: E-MTAB-12044:Sample 43

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: tomato

characteristic: description

text: plant structure development stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: root

characteristic: organism part

text: Solanum lycopersicum

text: Sample 43


E-MTAB-12044:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wageningen University and Research

text: public

text: E-MTAB-12044:Sample 44

text: ArrayExpress

characteristic: broker name

text: tomato

characteristic: common name

text: plant structure development stage

text: wild type genotype

text: long day length regimen

text: mixed pool of 50 to 90 galls

text: Meloidogyne incognita

characteristic: infect

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 44

characteristic: title


E-MTAB-12044:Sample 45

characteristic: ENA-FIRST-PUBLIC

text: Wageningen University and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-12044:Sample 45

text: ArrayExpress

text: tomato

text: plant structure development stage

text: wild type genotype

text: long day length regimen

characteristic: growth condition

text: mixed pool of 50 to 90 galls

characteristic: individual

text: Solanum lycopersicum

text: Solanum lycopersicum

text: root

text: Solanum lycopersicum

text: Sample 45