characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.14.1

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Limosilactobacillus reuteri

characteristic: organism

text: Limosilactobacillus reuteri

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus reuteri

text: multi-marker approach

text: Binned metagenome: ERR4647693_bin.1_MetaWRAP_v1.1_bin

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

text: not provided

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4647691,ERR4647692,ERR4647693,ERR4647694,ERR4647695,ERR4647696,ERR4647697,ERR4647698,ERR4647699,ERR4647712,ERR4647713,ERR4647716 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Cellulomonadaceae bacterium

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum and ileum samples. Samples selected for this batch were randomised among trials (feed), age, and breed to overcome batch effect. The caecum samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]), and the ileum samples contributed to the chicken ileum MAG catalogue (project: PRJEB55375 [ERP140264]).

characteristic: project name

text: SAMEA7368185,SAMEA7368180,SAMEA7368178,SAMEA7368184,SAMEA7368182,SAMEA7368179,SAMEA7368183,SAMEA7368186,SAMEA7368188,SAMEA7368177,SAMEA7368181,SAMEA7368187

characteristic: sample derived from

text: uncultured Cellulomonadaceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Cellulomonadaceae;g__Pseudactinotalea;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647all_bin.25_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4647692,ERR4647693,ERR4647713 of study ERP122587.

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Eubacteriales bacterium

characteristic: organism

text: uncultured Eubacteriales bacterium

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

text: multi-marker approach

text: Binned metagenome: ERR4647lq_bin.4_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647716 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Lactobacillus johnsonii

characteristic: project name

characteristic: sample derived from

text: Lactobacillus johnsonii

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647716_bin.13_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

text: CheckM

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

characteristic: organism

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__;c__;o__;f__;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus faecipullorum

text: multi-marker approach

text: Binned metagenome: ERR4647all_bin.26_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647713 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Lactobacillus sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillus sp.

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647713_bin.7_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MEGAHIT v1.2.9

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647692 of study ERP122587.

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli

text: multi-marker approach

text: Binned metagenome: ERR4647692_bin.1_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Escherichia coli

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum and ileum samples. Samples selected for this batch were randomised among trials (feed), age, and breed to overcome batch effect. The caecum samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]), and the ileum samples contributed to the chicken ileum MAG catalogue (project: PRJEB55375 [ERP140264]).

characteristic: project name

characteristic: sample derived from

text: Escherichia coli

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647716_bin.24_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4647691,ERR4647692,ERR4647693,ERR4647694,ERR4647695,ERR4647696,ERR4647697,ERR4647698,ERR4647699,ERR4647712,ERR4647713,ERR4647716 of study ERP122587.

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Candidatus Lactobacillus pullistercoris

characteristic: organism

text: SAMEA7368185,SAMEA7368180,SAMEA7368178,SAMEA7368184,SAMEA7368182,SAMEA7368179,SAMEA7368183,SAMEA7368186,SAMEA7368188,SAMEA7368177,SAMEA7368181,SAMEA7368187

text: Candidatus Lactobacillus pullistercoris

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Candidatus Lactobacillus pullistercoris

text: multi-marker approach

text: Binned metagenome: ERR4647all_bin.12_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647693 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Eubacteriales bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Eubacteriales bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647693_bin.5_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.14.1

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Limosilactobacillus vaginalis

characteristic: organism

text: Limosilactobacillus vaginalis

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus vaginalis

text: multi-marker approach

text: Binned metagenome: ERR4647713_bin.1_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647699 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Ligilactobacillus aviarius

characteristic: project name

characteristic: sample derived from

text: Ligilactobacillus aviarius

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus aviarius

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647699_bin.9_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.14.1

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: uncultured Candidatus Arthromitus sp.

characteristic: organism

text: uncultured Candidatus Arthromitus sp.

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Arthromitus;s__

text: multi-marker approach

text: Binned metagenome: ERR4647699_bin.11_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647716 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Ligilactobacillus salivarius

text: Metagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum and ileum samples. Samples selected for this batch were randomised among trials (feed), age, and breed to overcome batch effect. The caecum samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]), and the ileum samples contributed to the chicken ileum MAG catalogue (project: PRJEB55375 [ERP140264]).

characteristic: project name

characteristic: sample derived from

text: Ligilactobacillus salivarius

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus;s__Ligilactobacillus salivarius

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647716_bin.8_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: not provided

text: CheckM

text: This sample represents a binned metagenome assembled from the metagenomic runs ERR4647691,ERR4647692,ERR4647693,ERR4647694,ERR4647695,ERR4647696,ERR4647697,ERR4647698,ERR4647699,ERR4647712,ERR4647713,ERR4647716 of study ERP122587.

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Mammaliicoccus lentus

characteristic: organism

text: SAMEA7368185,SAMEA7368180,SAMEA7368178,SAMEA7368184,SAMEA7368182,SAMEA7368179,SAMEA7368183,SAMEA7368186,SAMEA7368188,SAMEA7368177,SAMEA7368181,SAMEA7368187

text: Mammaliicoccus lentus

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Mammaliicoccus;s__Mammaliicoccus lentus

text: multi-marker approach

text: Binned metagenome: ERR4647all_bin.30_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a binned metagenome assembled from the metagenomic run ERR4647713 of study ERP122587.

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: uncultured Lactobacillaceae bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured Lactobacillaceae bacterium

characteristic: sequencing method

text: The taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__;s__

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647713_bin.8_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COPENHAGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metaSPAdes v3.14.1

characteristic: assembly software

characteristic: binning parameters

text: MetaWRAP v1.1

characteristic: binning software

text: Chicken digestive system

characteristic: broad-scale environmental context

text: EMG broker account, EMBL-EBI

characteristic: broker name

text: CheckM

text: Ileum

text: Spain

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: chicken gut metagenome

text: Digestive tube

text: chicken gut metagenome

text: Ligilactobacillus salivarius

characteristic: organism

text: Ligilactobacillus salivarius

text: multi-marker approach

text: Binned metagenome: ERR4647713_bin.3_MetaWRAP_v1.1_bin

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COPENHAGEN

text: public

text: metaSPAdes v3.14.1

text: MetaWRAP v1.1

text: Chicken digestive system

text: EMG broker account, EMBL-EBI

characteristic: collection date

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: Ileum

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome-assembled genome

characteristic: investigation type

text: chicken gut metagenome

text: Digestive tube

characteristic: local environmental context

text: chicken gut metagenome

characteristic: metagenomic source

text: Mammaliicoccus lentus

characteristic: project name

characteristic: sample derived from

text: Mammaliicoccus lentus

characteristic: sequencing method

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker

text: Binned metagenome: ERR4647713_bin.2_MetaWRAP_v1.1_bin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUT PASTEUR

characteristic: Submitter Id

text: Paenibacillus sp. JJ-100

characteristic: organism

text: Paenibacillus sp. JJ-100

text: whole genome sequencing of Paenibacillus sp. JJ-100 = CIP112173

characteristic: title


text: Joe

text: public

text: Sardinian pika

characteristic: common name

text: Partial mandibular apparatus with teeth

characteristic: description

text: Prolagus sardus

text: Prolagus sardus

text: Mandible PR6


characteristic: GISAID Accession ID

text: public

tag: Namespace:Hopital du Valais, Institut Central des Hopitaux, Sion, Switzerland

text: SIB

characteristic: broker name

text: Valais Hospital, Central Institute; Sion, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Alexis Dumoulin, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BL

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BL-ICH-2221233290/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10795:RA01_DM_NS.AddRG.Reorder.Sort.bam

tag: Namespace:Department of rheumatology, Tokyo medical and dental university

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: Protocols: Cells were lysed with RLT buffer RASFs were obtained from 5 individual patients and were maintained in the DMEM with 10%FBS and 1% penicillin and streptomycin. Synovial tissues were obtained from patients with RA when they underwent joint replacement surgery or synovectomy. All the patients fulfilled the criteria of the American College of Rheumatology and consent forms were completed by the patients before surgery. RASFs were isolated and cultured as described elsewhere. The experiments used proliferating RASFs (from passage 3 or 4). RASFs were plated to 10cm dish and incubated overnight. Next day, RASFs were treated with 2uM of palbociclib or DMSO. After 24 hours, RASFs were treated with 0.2ng/ml of TNF+IL-1b respectively for 24 hours. RASFs were lysed with RLT buffer RNeasy Plus Mini Kit (QIAGEN) according to the manufacture's protocol 1)mRNA enrichment and purification: Oligo dT Selection to enrich the mRNA (For total RNA extracted from human whole blood, globin mRNA are depleted ); 2)RNA fragmentation and cDNA synthesis (second-strand cDNA synthesis with dUTP instead of dTTP); 3)End repair, add A and adaptor ligation; 4)PCR; 5)Circularization and make DNB; 6) Sequencing on DNBSEQ platform

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: synovial joint

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Department of rheumatology, Tokyo medical and dental university

text: public

text: E-MTAB-10795:RA01_DM_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

characteristic: description

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10795:RA01_PD_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10795:RA01_PD_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA02_DM_NS.AddRG.Reorder.Sort.bam

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA02_DM_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: synovial joint

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-10795:RA02_PD_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

characteristic: description

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10795:RA02_PD_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10795:RA03_DM_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA03_DM_TI.AddRG.Reorder.Sort.bam

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA03_PD_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: synovial joint

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-10795:RA03_PD_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

characteristic: description

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10795:RA04_DM_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10795:RA04_DM_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA04_PD_NS.AddRG.Reorder.Sort.bam

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA04_PD_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: synovial joint

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-10795:RA05_DM_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: human

characteristic: common name

text: Protocols: Cells were lysed with RLT buffer RASFs were obtained from 5 individual patients and were maintained in the DMEM with 10%FBS and 1% penicillin and streptomycin. Synovial tissues were obtained from patients with RA when they underwent joint replacement surgery or synovectomy. All the patients fulfilled the criteria of the American College of Rheumatology and consent forms were completed by the patients before surgery. RASFs were isolated and cultured as described elsewhere. The experiments used proliferating RASFs (from passage 3 or 4). RASFs were plated to 10cm dish and incubated overnight. Next day, RASFs were treated with 2uM of palbociclib or DMSO. After 24 hours, RASFs were treated with 0.2ng/ml of TNF+IL-1b respectively for 24 hours. RASFs were lysed with RLT buffer RNeasy Plus Mini Kit (QIAGEN) according to the manufacture's protocol 1)mRNA enrichment and purification: Oligo dT Selection to enrich the mRNA (For total RNA extracted from human whole blood, globin mRNA are depleted ); 2)RNA fragmentation and cDNA synthesis (second-strand cDNA synthesis with dUTP instead of dTTP); 3)End repair, add A and adaptor ligation; 4)PCR; 5)Circularization and make DNB; 6) Sequencing on DNBSEQ platform

characteristic: description

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of rheumatology, Tokyo medical and dental university

characteristic: INSDC center name

text: public

text: E-MTAB-10795:RA05_DM_TI.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10795:RA05_PD_NS.AddRG.Reorder.Sort.bam

text: ArrayExpress

text: fibroblast

text: human

text: adult

text: rheumatoid arthritis

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: public

text: E-MTAB-10795:RA05_PD_TI.AddRG.Reorder.Sort.bam

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: adult

characteristic: developmental stage

text: rheumatoid arthritis

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: synovial joint

text: Homo sapiens


text: Sanger Institute

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

tag: Namespace:Tree of Life Programme

text: SALLY ADAMS

text: UNIVERSITY OF WARWICK

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Coventry

characteristic: geographic location (region and locality)

text: rotting stems

characteristic: habitat

text: MARIE ANNE FELIX

text: CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE

text: adult

characteristic: lifestage

text: Auanema freiburgensis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ToL

characteristic: project name

text: Auanema freiburgensis

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: Germany

text: not collected

text: not collected

text: Freiburg

text: horse dung

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: adult

text: Auanema freiburgensis

text: WHOLE ORGANISM

text: ToL

text: Auanema freiburgensis

text: NOT COLLECTED

text: N


text: Sanger Institute

characteristic: GAL

text: Tree of Life Programme

text: public

text: SALLY ADAMS

text: UNIVERSITY OF WARWICK

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Coventry

characteristic: geographic location (region and locality)

text: rotting stems

characteristic: habitat

text: MARIE ANNE FELIX

text: adult

characteristic: lifestage

text: Auanema freiburgensis

text: WHOLE ORGANISM

characteristic: sample same as

text: Auanema freiburgensis

text: NOT COLLECTED

text: N


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Sanger Institute

text: Tree of Life Programme

text: public

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: Germany

text: not collected

text: not collected

text: Freiburg

text: horse dung

text: WALTER SUDHAUS

text: FREIE UNIVERSITAET BERLIN

text: adult

text: Auanema freiburgensis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

characteristic: project name

text: Auanema freiburgensis

text: NOT COLLECTED

text: N

characteristic: symbiont

characteristic: title

characteristic: tolid


text: University of Eastern Finland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:768-5153

tag: Namespace:University of Eastern Finland

characteristic: Submitter Id

text: human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: oral sample

characteristic: description

text: subgingival sample

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: oral metagenome

characteristic: local environmental context

text: human oral metagenome

text: FINORAL

text: human oral metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:768-5155

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: oral metagenome

text: human oral metagenome

characteristic: organism

text: FINORAL

text: human oral metagenome


text: University of Eastern Finland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:769-5157

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

text: oral metagenome

text: human oral metagenome

text: FINORAL

characteristic: project name

text: human oral metagenome

characteristic: title


text: University of Eastern Finland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:769-5159

characteristic: Submitter Id

text: human-associated habitat

characteristic: broad-scale environmental context

characteristic: collection date

text: oral sample

text: subgingival sample

text: Finland

text: oral metagenome

text: human oral metagenome

text: FINORAL

text: human oral metagenome


characteristic: ENA-CHECKLIST

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:769-5161

text: human-associated habitat

text: oral sample

characteristic: description

text: subgingival sample

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: oral metagenome

characteristic: local environmental context

text: human oral metagenome

text: FINORAL

text: human oral metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:770-5163

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: oral metagenome

text: human oral metagenome

text: FINORAL

text: human oral metagenome


text: University of Eastern Finland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:770-5169

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

text: oral metagenome

text: human oral metagenome

characteristic: organism

text: FINORAL

characteristic: project name

text: human oral metagenome


text: University of Eastern Finland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:770-5171

characteristic: Submitter Id

text: human-associated habitat

characteristic: broad-scale environmental context

text: oral sample

text: subgingival sample

text: Finland

text: oral metagenome

text: human oral metagenome

text: FINORAL

text: human oral metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:771-5173

text: human-associated habitat

characteristic: collection date

text: oral sample

characteristic: description

text: subgingival sample

characteristic: environmental medium

text: Finland

characteristic: geographic location (country and/or sea)

text: oral metagenome

text: human oral metagenome

text: FINORAL

text: human oral metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:771-5175

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

characteristic: geographic location (latitude)

text: oral metagenome

characteristic: local environmental context

text: human oral metagenome

text: FINORAL

text: human oral metagenome


text: University of Eastern Finland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:771-5177

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

characteristic: geographic location (longitude)

text: oral metagenome

text: human oral metagenome

characteristic: organism

text: FINORAL

text: human oral metagenome


text: University of Eastern Finland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:771-5179

characteristic: Submitter Id

text: human-associated habitat

characteristic: broad-scale environmental context

text: oral sample

text: subgingival sample

text: Finland

text: oral metagenome

text: human oral metagenome

text: FINORAL

characteristic: project name

text: human oral metagenome


characteristic: ENA-CHECKLIST

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:771-5181

text: human-associated habitat

characteristic: collection date

text: oral sample

characteristic: description

text: subgingival sample

characteristic: environmental medium

text: Finland

text: oral metagenome

text: human oral metagenome

text: FINORAL

text: human oral metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Eastern Finland

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:771-5183

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: oral metagenome

text: human oral metagenome

text: FINORAL

text: human oral metagenome


text: University of Eastern Finland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:772-5185

text: human-associated habitat

text: oral sample

text: subgingival sample

text: Finland

characteristic: geographic location (longitude)

text: oral metagenome

characteristic: local environmental context

text: human oral metagenome

text: FINORAL

text: human oral metagenome


text: University of Eastern Finland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-01-2023-11:33:13:772-5187

characteristic: Submitter Id

text: human-associated habitat

characteristic: broad-scale environmental context

text: oral sample

text: subgingival sample

text: Finland

text: oral metagenome

text: human oral metagenome

characteristic: organism

text: FINORAL

text: human oral metagenome


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Dianalabs, Geneva, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

characteristic: collector name

text: Switzerland

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-DIA-161604440501/2022

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: active surveillance not initiated by an outbreak


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Dianalabs, Geneva, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-DIA-161604315101/2022

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: Medisupport

text: public

text: SIB

characteristic: broker name

text: Dianalabs, Geneva, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

text: GE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

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